Notes:

Release Name: NeuroDOT v1.2 (v1.2)

Notes:

The most up to date version of NeuroDOT can be found on our GitHub https://github.com/WUSTL-ORL/NeuroDOT (also listed under ‘Downloads: NeuroDOT NITRC Release’). NeuroDOT –Matlab is currently optimized to run on version 2020b of Matlab. Additional specifications for optimal performance are in the README.

Changes:

Changes since NeuroDOT v1.1:


1. Compatibility with SNIRF format:



  • Updated info.paradigm.synchpt creation in snirf2ndot

  • Added ndot2snirf to convert from NeuroDOT format to SNIRF format

  • Verified compatibility with LUMO


2. Added NIRS format compatibility:



  • nirs2ndot to convert data from .nirs files to be used in NeuroDOT

  • ndot2nirs to convert NeuroDOT data to .nirs format


3. Added NIFTI format compatibility:



  • Added nifti_4dfp to convert between .nii and .4dfp format

  • Updated LoadVolumetricData and SaveVolumetricData to be compatible with .nii files

  • Fixed compatibility with ‘nii.gz’ extension


4. Added new functions:



  • Visualizations: AdjustFoci, Draw_ROIs_on_Cortex, Nuisance_Regress, PlotCapMeasSpaceData_Pairs, Two_D_Image_hist, GrayPlot_TimeTrace_Rsd_by_WL

  • Light Modeling: OptProp, PSF_Metrics_200630, threshold5R_new, calc_NN, Generate_pad_from_grid 

  • Spatial Transforms: resample_A_to_atlas

  • Reconstruction: MBLL


5. Updated NeuroDOT Tutorial PowerPoints and Scripts:



  • AlignMe tutorials

  • Script for Generating a Pad File

  • Full Data Processing Overview

  • Visualization Overview


6. Updates to AlignMe:



  • Updated method for scaling from atlas to participant measurements

  • Updated transform to match pre-multiply convention