[Brains-users] brain mask - problems with automatic definition

[Eugene Zeien]

The segmented image looks reasonable?

And, when you use
    Workup -> Run Neural -> MR5 -> Brain...
the segmented image's filename ends up in the first field?

Any chance you could send a screenshot of the segmented image?
Or was that the segmented image under the mask in the previous pictures?

gene

On Tue, 2007-02-13 at 19:51 +0100, Christoph Christmann wrote:
> The result is based on a segmentation of a T1 and a T2 weighted 
> image. The problem occurs with every data set. Until now we correct 
> the brain mask manually, however as you can imagine this is rather boring...
> 
> Christoph
> 
> At Tuesday 13.02.2007 19:44, Gene Zeien wrote:
> >Looks like the results I get when I feed the Neural Net a T1 image
> >rather than a segmented image.
> >
> >Anyone else seen this type of problem?
> >
> >http://www.psychiatry.uiowa.edu/pipermail/brains-
> >users/attachments/20070213/c7f972c9/brain_mask_axi-0001.jpg
> >
> >On Tue, 2007-02-13 at 18:37 +0100, Christoph Christmann wrote:
> > > sorry, here are the pictures
> > >
> > >
> > > >http://www.psychiatry.uiowa.edu/mailman/listinfo/brains-users
> > >
> > > --
> > > Christoph Christmann                  christoph.christmann at zi-mannheim.de
> > > Psychologist, MEE                     Fon/Fax +49 621 1703 63 18/05
> > > Central Institute of Mental Health    http://www.zi-mannheim.de
> > > Department of Clinical                D-68159 Mannheim J5
> > > and Cognitive Psychology
> > > _______________________________________________ Brains-users 
> > mailing list Brains-users at www.psychiatry.uiowa.edu 
> > http://www.psychiatry.uiowa.edu/mailman/listinfo/brains-users
> >--
> >Gene Zeien <gene at psychiatry.uiowa.edu>
> >
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