[Camino-users] Connectivity Matrix Using FreeSurfer Parcellation

[maedeh khalilian]

Dear Dr.Philip Cook
Yeah, you are right. I could compute the eigen system after all. I'm rather
new to Camino, so I'm not familiar with the commom errors or the
information.
Thank u very much.
The next challenge I am faced with is calculating the connectivity matrix.
Actually I have a parcellation which is the output of FreeSurfer, it is in
my anatomical(T1 ) image's space, I mean both are (256*256*320).But the
dimensions of my DWI is different.
Do my DWI , my white matter (seed points) and my target file( parcellation)
have to be in the same space???
If yes, how should I do that?
For example in DSI Studio the normalization gets done automatically.
But now i dinno what to do.
I would be grateful if you could help me.
Thanks in advance.
Best regards,
Maedeh,
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