[Mrtrix-discussion] MRTrix Track visualization

[Jean-Christophe Houde]

Dear Ralf,

2 other options are also quite handy:

- You can use the Fibernavigator 
<https://github.com/scilus/fibernavigator> to display them directly. You 
only need to load the supporting anatomy before, to correctly get the 
transformation matrix.
- You can use the Tractconverter 
<https://github.com/MarcCote/tractconverter> to convert them to some 
formats that are supported by other applications.

Best regards,

-- 
Jean-Christophe Houde, M. Sc.
Research assistant
Sherbrooke Connectivity Imaging Lab <http://scil.dinf.usherbrooke.ca/>
Sherbrooke University

Le 14-04-25 06:25, Ivan Alvarez a écrit :
> Dear Ralf,
>
> There are a few ways to do this - MRview has a "2.5D" display, which 
> lets you rotate the viewpoint by pressing ctrl+middle mouse button - 
> it's explained in a recent thread on the mailing list.
>
> As for proper 3D renders, you can try converting your streamlines to a 
> format readable by a third party package. People have successfully 
> managed to display streamlines in ParaView <http://www.paraview.org/> 
> via Camino <http://cmic.cs.ucl.ac.uk/camino/index.php?n=Tutorials.DTI> 
> and in TrackVis <http://trackvis.org/> via Nipype 
> <http://nipy.sourceforge.net/nipype/interfaces/generated/nipype.interfaces.mrtrix.convert.html>. 
>
> -- 
> Kind regards,
> Ivan Alvarez
>
> PhD Candidate
> Imaging and Biophysics Unit
> UCL Institute of Child Health
> 30 Guilford Street, London, WC1N 1EH
> On 25/04/2014 11:16, Luetzkendorf, Ralf wrote:
>> Hi MRTrix Fans,
>>
>> I was wondering if there is a way to visualize the results in 3D. There was a discussion in the forum from 2012.
>> Is thee any new way or a favorit way to visualize?
>>
>> Thenaks for the help,
>>
>> Ralf Luetzkendorf
>> _______________________________________________
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>> Mrtrix-discussion at www.nitrc.org
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>>
>
>
>
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