[Mrtrix-discussion] MRTrix Track visualization

[Ivan Alvarez]

Jean, Fibernavigator looks great! Will have to check it out, thanks for 
the heads up : )

Kind regards,
Ivan Alvarez

PhD Candidate
Imaging and Biophysics Unit
UCL Institute of Child Health
30 Guilford Street, London, WC1N 1EH

On 25/04/14 14:43, Jean-Christophe Houde wrote:
> Dear Ralf,
>
> 2 other options are also quite handy:
>
> - You can use the Fibernavigator 
> <https://github.com/scilus/fibernavigator> to display them directly. 
> You only need to load the supporting anatomy before, to correctly get 
> the transformation matrix.
> - You can use the Tractconverter 
> <https://github.com/MarcCote/tractconverter> to convert them to some 
> formats that are supported by other applications.
>
> Best regards,
>
> -- 
> Jean-Christophe Houde, M. Sc.
> Research assistant
> Sherbrooke Connectivity Imaging Lab <http://scil.dinf.usherbrooke.ca/>
> Sherbrooke University
>
> Le 14-04-25 06:25, Ivan Alvarez a écrit :
>> Dear Ralf,
>>
>> There are a few ways to do this - MRview has a "2.5D" display, which 
>> lets you rotate the viewpoint by pressing ctrl+middle mouse button - 
>> it's explained in a recent thread on the mailing list.
>>
>> As for proper 3D renders, you can try converting your streamlines to 
>> a format readable by a third party package. People have successfully 
>> managed to display streamlines in ParaView <http://www.paraview.org/> 
>> via Camino 
>> <http://cmic.cs.ucl.ac.uk/camino/index.php?n=Tutorials.DTI> and in 
>> TrackVis <http://trackvis.org/> via Nipype 
>> <http://nipy.sourceforge.net/nipype/interfaces/generated/nipype.interfaces.mrtrix.convert.html>. 
>>
>> -- 
>> Kind regards,
>> Ivan Alvarez
>>
>> PhD Candidate
>> Imaging and Biophysics Unit
>> UCL Institute of Child Health
>> 30 Guilford Street, London, WC1N 1EH
>> On 25/04/2014 11:16, Luetzkendorf, Ralf wrote:
>>> Hi MRTrix Fans,
>>>
>>> I was wondering if there is a way to visualize the results in 3D. There was a discussion in the forum from 2012.
>>> Is thee any new way or a favorit way to visualize?
>>>
>>> Thenaks for the help,
>>>
>>> Ralf Luetzkendorf
>>> _______________________________________________
>>> Mrtrix-discussion mailing list
>>> Mrtrix-discussion at www.nitrc.org
>>> http://www.nitrc.org/mailman/listinfo/mrtrix-discussion
>>>
>>
>>
>>
>> _______________________________________________
>> Mrtrix-discussion mailing list
>> Mrtrix-discussion at www.nitrc.org
>> http://www.nitrc.org/mailman/listinfo/mrtrix-discussion
>
>
>
> _______________________________________________
> Mrtrix-discussion mailing list
> Mrtrix-discussion at www.nitrc.org
> http://www.nitrc.org/mailman/listinfo/mrtrix-discussion

-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://www.nitrc.org/pipermail/mrtrix-discussion/attachments/20140425/29f5a610/attachment.html>