[Mrtrix-discussion] nipype issue

[Chris Filo Gorgolewski]

It's on the TODO list! But we are very welcome people contributing code:
http://nipy.org/nipype/devel/gitwash/index.html

Best,
Chris

On Thu Dec 18 2014 at 8:53:07 AM J-Donald Tournier <jdtournier at gmail.com>
wrote:

> I have a feeling nipype would expect the 0.2.x version of MRtrix. I'd be
> very surprised (and most impressed) if they'd already updated everything to
> work with MRtrix3...
>
> Cheers,
> Donald.
>
>
> On 18 December 2014 at 16:45, Roine Timo <timo.roine at uantwerpen.be> wrote:
>>
>>  Hello,
>>
>>  These two functions have been replaced with the tensor2metric function,
>> which provides functionality for both fa and ev (vector) computation.
>>
>>  Cheers,
>> Timo
>>
>>   *Lähettäjä:* mrtrix-discussion-bounces at public.nitrc.org [
>> mrtrix-discussion-bounces at public.nitrc.org] käyttäjän anvi vora [
>> anvikvora at gmail.com] puolesta
>> *Lähetetty:* 18. joulukuuta 2014 17:39
>> *Vastaanottaja:* Erik Ziegler
>> *Kopio:* nipy-devel; mrtrix mailinglist
>> *Aihe:* Re: [Mrtrix-discussion] nipype issue
>>
>>   Thank you all for help on this, I appreciate.
>>
>>  So the error seems to be because I am missing tensor2fa and
>> tensor2vector, among other things, which were not in my binary folder.
>> Then I checked CMD folder, which ./build script calls, and these were
>> missing from there are well.  When I checked the latest commit for Mrtrix
>> on Github (I had downloaded from Github), these were not in CMD folder
>> there either.  I then saw them in the /mrtrix3/userdoc/commands folder
>> as html files.
>>
>>  Sorry to ask, but how do I get these commands in CMD folder or as
>> binaries?
>>
>>  Thanks again
>>
>> On Wed, Dec 17, 2014 at 5:15 PM, Erik Ziegler <erik.ziegler at ulg.ac.be>
>> wrote:
>>>
>>> I'd say that Donald is right, it looks like you forgot to run
>>> sudo ./build install after ./build and that's why you don't have the
>>> binaries in your path.
>>>
>>>  On Wed, Dec 17, 2014 at 9:02 PM, A.S. KANAAN <amadeus.kanaan at gmail.com>
>>> wrote:
>>>
>>>>   you have  multiple mrtrix related crashes.. hard to say without
>>>> looking at the crash file.
>>>>
>>>>  check the crash file by typing
>>>> $nipype_display_crash 'crash_file.......'
>>>>
>>>>  a guess is that the mrtrix environ has not been initialized.
>>>>
>>>> but mabye the nipype guys have some other thoughts.
>>>>
>>>>
>>>>
>>>>
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>>
>
> --
> *Dr J-Donald Tournier (PhD)*
>
> *Senior Lecturer, **Biomedical Engineering*
>
> *Division of Imaging Sciences & Biomedical EngineeringKing's College
> London*
>
>
> *A: Department of Perinatal Imaging & Health, 1st Floor South Wing, St
> Thomas' Hospital, London. SE1 7EH*
> *T: +44 (0)20 7188 7118 ext 53613*
> *W: http://www.kcl.ac.uk/medicine/research/divisions/imaging/departments/biomedengineering
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