[Mrtrix-discussion] nipype issue

[J-Donald Tournier]

I have a feeling nipype would expect the 0.2.x version of MRtrix. I'd be
very surprised (and most impressed) if they'd already updated everything to
work with MRtrix3...

Cheers,
Donald.


On 18 December 2014 at 16:45, Roine Timo <timo.roine at uantwerpen.be> wrote:
>
>  Hello,
>
>  These two functions have been replaced with the tensor2metric function,
> which provides functionality for both fa and ev (vector) computation.
>
>  Cheers,
> Timo
>
>   *Lähettäjä:* mrtrix-discussion-bounces at public.nitrc.org [
> mrtrix-discussion-bounces at public.nitrc.org] käyttäjän anvi vora [
> anvikvora at gmail.com] puolesta
> *Lähetetty:* 18. joulukuuta 2014 17:39
> *Vastaanottaja:* Erik Ziegler
> *Kopio:* nipy-devel; mrtrix mailinglist
> *Aihe:* Re: [Mrtrix-discussion] nipype issue
>
>   Thank you all for help on this, I appreciate.
>
>  So the error seems to be because I am missing tensor2fa and
> tensor2vector, among other things, which were not in my binary folder.
> Then I checked CMD folder, which ./build script calls, and these were
> missing from there are well.  When I checked the latest commit for Mrtrix
> on Github (I had downloaded from Github), these were not in CMD folder
> there either.  I then saw them in the /mrtrix3/userdoc/commands folder as
> html files.
>
>  Sorry to ask, but how do I get these commands in CMD folder or as
> binaries?
>
>  Thanks again
>
> On Wed, Dec 17, 2014 at 5:15 PM, Erik Ziegler <erik.ziegler at ulg.ac.be>
> wrote:
>>
>> I'd say that Donald is right, it looks like you forgot to run
>> sudo ./build install after ./build and that's why you don't have the
>> binaries in your path.
>>
>>  On Wed, Dec 17, 2014 at 9:02 PM, A.S. KANAAN <amadeus.kanaan at gmail.com>
>> wrote:
>>
>>>   you have  multiple mrtrix related crashes.. hard to say without
>>> looking at the crash file.
>>>
>>>  check the crash file by typing
>>> $nipype_display_crash 'crash_file.......'
>>>
>>>  a guess is that the mrtrix environ has not been initialized.
>>>
>>> but mabye the nipype guys have some other thoughts.
>>>
>>>
>>>
>>>
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>

-- 
*Dr J-Donald Tournier (PhD)*

*Senior Lecturer, **Biomedical Engineering*

*Division of Imaging Sciences & Biomedical EngineeringKing's College London*


*A: Department of Perinatal Imaging & Health, 1st Floor South Wing, St
Thomas' Hospital, London. SE1 7EH*
*T: +44 (0)20 7188 7118 ext 53613*
*W: http://www.kcl.ac.uk/medicine/research/divisions/imaging/departments/biomedengineering
<http://www.kcl.ac.uk/medicine/research/divisions/imaging/departments/biomedengineering>*
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