Automatic Extra-Axial Cerebrospinal Fluid (Auto EACSF)

Automatic Extra-Axial Cerebrospinal Fluid (Auto EACSF) is an open-source, interactive tool for automatic computation of brain extra-axial cerebrospinal fluid (EA-CSF) in magnetic resonance image (MRI) scans of infants. Auto EACSF aims to automatically calculate the volume of EA-CSF. Auto EACSF is a user-friendly application that generates a Qt application to calculate the volume of EA-CSF. The application is run through a GUI, but also provides an advanced use mode that allows execution of different steps by themselves via Python and XML scripts.

Execution Options

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Specifications

Category:

Segmentation

License:

Apache License 2.0

Development Status:

4 - Beta

Diagnosis:

Child Development Disorders, Pervasive

Domain:

Computational Neuroscience, MR

Intended Audience:

End Users

Natural Language:

English

Operating System:

Linux

Programming Language:

C++, Python

Recent Activity - Documents

Atlases documentation

Adult atlas ICBM 152 2009 posted by Juan Prieto on Jul 6, 2020

Atlases documentation

One year reference space and tissue segmentation atlas posted by Martin Styner on Sep 27, 2019

Technical Publications documentation

A Novel Framework for the Local Extraction of Extra-Axial Cerebrospinal Fluid from MR Brain Images. posted by Martin Styner on Jul 17, 2019

Technical Publications documentation

Increased Extra-axial Cerebrospinal Fluid in High-Risk Infants Who Later Develop Autism. posted by Martin Styner on Jul 17, 2019

Technical Publications documentation

Early brain enlargement and elevated extra-axial fluid in infants who develop autism spectrum disorder. posted by Martin Styner on Jul 17, 2019

Main Folder documentation

Tutorial (PPTX) v1.0 posted by Martin Styner on Jul 10, 2019

Atlases documentation

Tissue segmentation and ventricle masking atlases posted by Arthur Le Maout on Apr 18, 2019

Skullstripping atlases documentation

Skull stripping atlases part 2 (LargeCSF01 T1 T2, LargeCSF02 T1 T2, NIHPD T2) posted by Arthur Le Maout on Apr 18, 2019

Skullstripping atlases documentation

Skull stripping atlases part 1 (Colin27 T1, IBIS T1, ICBM T1 T2) posted by Arthur Le Maout on Apr 18, 2019

Main Folder documentation

Tutorial for Auto EACSF posted by Arthur Le Maout on Apr 17, 2019

Recent Activity - Forums

help forum

RE: Error: ipGetArgument: argument value of option "-majorityVoting" is missing! posted by Juan Prieto on May 9, 2022

help forum

RE: Error: ipGetArgument: argument value of option "-majorityVoting" is missing! posted by Ayan Mandal on May 9, 2022

help forum

RE: Error: ipGetArgument: argument value of option "-majorityVoting" is missing! posted by Juan Prieto on May 9, 2022

help forum

Error: ipGetArgument: argument value of option "-majorityVoting" is missing! posted by Ayan Mandal on May 9, 2022

help forum

RE: Registration posted by Chieh-En Tseng on Feb 1, 2021

help forum

RE: Registration posted by Martin Styner on Feb 1, 2021

help forum

Registration posted by Chieh-En Tseng on Feb 1, 2021

help forum

RE: Tissue Segmentation Input/Tissue Segmentation Atlas directory posted by Chieh-En Tseng on Dec 29, 2020

help forum

RE: Tissue Segmentation Input/Tissue Segmentation Atlas directory posted by Juan Prieto on Dec 29, 2020

help forum

RE: Tissue Segmentation Input/Tissue Segmentation Atlas directory posted by Chieh-En Tseng on Dec 29, 2020

Recent Activity - News

Tool & Resource news

MACOS version released posted by Juan Prieto on Apr 22, 2022

Tool & Resource news

v1.7.7 posted by Juan Prieto on Jun 23, 2020

Tool & Resource news

Releaset 1.7.6 posted by Juan Prieto on Jun 22, 2020

Tool & Resource news

Version 1.7.5 released posted by Juan Prieto on Jun 19, 2020

Tool & Resource news

Release 1.7.5 posted by Juan Prieto on Jun 16, 2020

Tool & Resource news

new examples in download posted by Martin Styner on Oct 1, 2019

Tool & Resource news

Version 1.4.1., now also for RHL/CentOS 6 posted by Martin Styner on Aug 13, 2019

Tool & Resource news

new version 1.4.1 posted by Martin Styner on Jul 8, 2019

Recent Activity - Files

Examples: Skull stripping release

brainmaskingMultiatlas_part1.zip posted by Juan Prieto on Apr 14, 2022

Examples: Skull stripping release

brainmaskingMultiatlas_part2.zip posted by Juan Prieto on Apr 14, 2022

auto_eacsf: 1.7.7 release

Auto_EACSF-1.7.7-Darwin.dmg posted by Juan Prieto on Apr 13, 2022

auto_eacsf: 1.7.7 release

Auto_EACSF-1.7.7-Linux.tar.gz posted by Juan Prieto on Jul 6, 2020

tools: 1.7.7 release

Auto_EACSF-1.7.7-Linux.tar.gz posted by Juan Prieto on Jun 23, 2020

auto_eacsf: 1.7.6 release

Auto_EACSF-1.7.6-Linux.tar.gz posted by Juan Prieto on Jun 22, 2020

auto_eacsf: 1.7.5 release

Auto_EACSF-1.7.5-Linux.tar.gz posted by Juan Prieto on Jun 16, 2020

auto_eacsf: 1.7.4 release

Auto_EACSF-1.7.4-Linux.tar.gz posted by Juan Prieto on Jun 11, 2020

auto_eacsf: 1.7.3 release

Auto_EACSF-1.7.3-Linux.tar.gz posted by Juan Prieto on Jun 3, 2020

auto_eacsf: RHEL 1.7.2 release

Auto_EACSF-1.7.2-Linux.tar.gz posted by Juan Prieto on Jun 2, 2020

Statistics more information

Home Page

Funding: National Institutes of Health (R01-HD055741, R01-HD05571-S1, R01-HD059854, T32-HD040127, U54HD086984), Autism Speaks, and the Simons Foundation (#140209).

Documents: 10

PubMed Mentions: 0

Forums: 132 messages in 1 forum

News Items: 8

Total Downloads: 3468

Registered: Oct 2, 2018

Organization: NIRAL, UNC Chapel Hill

Technical Publications: 3