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dcm2nii

dcm2nii is a popular tool for converting images from the complicated formats used by scanner manufacturers (DICOM, PAR/REC) to the simple NIfTI format used by many scientific tools. dcm2nii works for all modalities (CT, MRI, PET, SPECT) and sequence types. Note: dcm2nii has traditionally been included with MRIcron downloads. This project describes the next generation version which we refer to as dcm2niix. Future releases will supersede the (legacy) dcm2nii distributed with MRIcron.

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Diagnosis:

Amyotrophic Lateral Sclerosis, Aphasia, Attention Deficit Disorder with Hyperactivity, Autistic Disorder, Brain Concussion, Brain Injuries, Alzheimer Disease, Depression, Dyslexia, Epilepsy, Multiple Sclerosis, Parkinson Disease, Schizophrenia, Stroke, Cocaine-Related Disorders, Tourette Syndrome

Domain:

CT, MR, PET/SPECT

Natural Language:

Operating System:

MacOS, Windows, OS Independent, Linux

Programming Language:

Supported Data Format:

Associations

is part of:

is installed on:

works well with:

Recent Activity - Documents

PubMed Mentions documentation

Altered Brain Structure in Hemifacial Spasm Patients: A Multimodal Brain Structure Study. posted by NITRC Moderator on Nov 16

PubMed Mentions documentation

Differentiation between high-grade gliomas and solitary brain metastases based on multidiffusion MRI model quantitative analysis. posted by NITRC Moderator on Nov 16

PubMed Mentions documentation

Increased Parenchymal Free Water May Be Decreased by Revascularization Surgery in Patients with Moyamoya Disease. posted by NITRC Moderator on Oct 12

PubMed Mentions documentation

Brain structure and activity predicting cognitive maturation in adolescence. posted by NITRC Moderator on Oct 12

PubMed Mentions documentation

Relationship of Glymphatic Function with Cognitive Impairment, Sleep Disorders, Anxiety and Depression in Patients with Parkinson's Disease. posted by NITRC Moderator on Oct 12

PubMed Mentions documentation

Investigation of total cerebellar and flocculonodular lobe volume in Parkinson's disease and healthy individuals: a brain segmentation study. posted by NITRC Moderator on Sep 14

PubMed Mentions documentation

Variability in white matter structure relates to hallucination proneness. posted by NITRC Moderator on Sep 14

PubMed Mentions documentation

Relationship Between Resting State Functional Connectivity and Reading-Related Behavioural Measures in 69 Adults. posted by NITRC Moderator on Jul 20

PubMed Mentions documentation

Changes in cortical grey matter volume with Cognitive Orientation to daily Occupational Performance intervention in children with developmental coordination disorder. posted by NITRC Moderator on Jun 15

PubMed Mentions documentation

Re-awakening the brain: Forcing transitions in disorders of consciousness by external in silico perturbation. posted by NITRC Moderator on Jun 15

Recent Activity - Trackers

Inconsistent qform and sform offsets with 3d crop posted by Christopher Kovach on Nov 7

Support tracker

Can I generate json files without accompanying nii files? posted by Chris Rorden on Apr 6, 2020

Support tracker

Can I generate json files without accompanying nii files? posted by James Waltz on Apr 6, 2020

dcm2niix and DICOM from Siemens Prisma VE11b posted by Chris Rorden on Jun 29, 2016

dcm2niix and DICOM from Siemens Prisma VE11b posted by Jonathan Brooks on Jun 28, 2016

Elimination of isotropic volume Philips data posted by Chris Rorden on Jul 15, 2015

Elimination of isotropic volume Philips data posted by Martijn Froeling on Jul 15, 2015

occasionally wrong bvec for DTI data Philips posted by Martijn Froeling on Jul 15, 2015

Recent Activity - Forums

questions forum

RE: dcm2niix-derived SliceTiming as input for fsl's slicetimer posted by Panos Fotiadis on Dec 4

questions forum

RE: dcm2niix-derived SliceTiming as input for fsl's slicetimer posted by Chris Rorden on Dec 4

questions forum

dcm2niix-derived SliceTiming as input for fsl's slicetimer posted by Panos Fotiadis on Dec 4

questions forum

RE: Help converting inconsistent slice distances posted by Chris Rorden on Nov 30

questions forum

RE: Help converting inconsistent slice distances posted by Katie Vandeloo on Nov 27

questions forum

RE: Unable to equalize slice distances: slice order not consistently ascending. posted by Chris Rorden on Nov 13

questions forum

Unable to equalize slice distances: slice order not consistently ascending. posted by cathy lei on Nov 13

questions forum

RE: æ¥éï¼OpenJPEG j2k_to_image failed to decode posted by Chris Rorden on Nov 9

questions forum

æ¥éï¼OpenJPEG j2k_to_image failed to decode posted by long zhang on Nov 8

questions forum

RE: inconsistent B0map conversion on Philips DICOMS posted by Chris Rorden on Oct 28

Recent Activity - Files

dcm2nii: dcm2nii (source code, please download MRIcroGL for compiled version) release

GitHub posted by Chris Rorden on Sep 21, 2016

Statistics more information

RRID: SCR_014099

Funding: NIH R01DC009571, NIH U01DC011739

Documents: 2

PubMed Mentions: 167

Forums: 866 messages in 1 forum

News Items: 0

Task Manager: 0 open / 0 total

Tracker: 0 open / 0 total

Total Downloads: 12781

Registered: Sep 24, 2014

Organization: University of South Carolina

Center: McCausland Center for Brain Imaging

Assessments more information

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