Mindboggle: open source software for analyzing the shapes of brain structures from human MRI data

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Mindboggle (http://mindboggle.info and https://osf.io/ydyxu/) is open source software for analyzing the shapes of brain structures from human MRI data. The primary reference documenting and evaluating Mindboggle was published in PLoS Computational Biology:

Klein A, Ghosh SS, Bao FS, Giard J, Hame Y, Stavsky E, Lee N, Rossa B, Reuter M, Neto EC, Keshavan A. (2017) Mindboggling morphometry of human brains. PLoS Computational Biology 13(3): e1005350. doi:10.1371/journal.pcbi.1005350

Specifications

Category:
Algorithm or Reusable Library, Volumetric Analysis, Shape Analysis, Surface Analysis, Visualization
License:
Apache License 2.0
Development Status:
4 - Beta
Diagnosis:
Brain Concussion, Alzheimer Disease, Epilepsy, Migraine Disorders, Multiple Sclerosis, Parkinson Disease, Cocaine-Related Disorders
Domain:
Clinical Neuroinformatics, Computational Neuroscience, MR
Environment:
Console (Text Based)
Intended Audience:
Developers, End Users
Natural Language:
English
Operating System:
OS Independent
Pipelines and Workflows Supported:
NiPyPe
Programming Language:
C++, Python
Supported Data Format:
MGH/MGZ, NIfTI-1

Associations

is from the makers of:
Mindboggle-101 manually labeled brains
is installed on:
brainlife.io

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RRID: SCR_002438

Funding:

NIMH R01 MH084029-03

PubMed Mentions: 113

Registered: Jun 25, 2007

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