Mid-Space-Independent and Intermediate Deformable Image Registration

This open-source toolbox contains Matlab codes (and some binaries) for 2D and 3D deformable image registration, using the mid-space-independent (MSI) approach introduced by Aganj et al (NeuroImage 2017) and the intermediate deformable image registration (IDIR) introduced by Aganj & Fischl (ISBI 2023). Short tutorials are included in EXAMPLE_MSI.m and EXAMPLE_IDIR.m. If available, a GPU can be used for speed-up.

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Specifications

Category:

Tutorial, Intersubject, Intramodal, Intrasubject, Nonlinear Warp

License:

Free For Non-Commercial Use Only

Programming Language:

MATLAB

Other Keywords:

Deformable image registration

Associations

is from the makers of:

Quantification of Structural Brain Connectivity via a Conductance Model
Segmentation-based Multimodal Rigid Image Registration
Tissue Thickness Estimation via Minimum Line Integrals
Wavelet-based Image Fusion
Diffusion MRI Orientation Distribution Function in Constant Solid Angle (CSA-ODF) and Hough-Transform Tractography
Image Segmentation Based on the Local Center of Mass Computation
Expected Label Value (ELV) Computation for Multi-Atlas Image Soft-Segmentation
Locus Coeruleus Manual Labels for 20 HCP Subjects

Recent Activity - Documents

Application Publications documentation

Localization of the locus coeruleus using ELV and U-Net. posted by Iman Aganj on May 8

Main Folder documentation

Article describing the IDIR method posted by Iman Aganj on Mar 28, 2023

Main Folder documentation

Article describing the MSI method posted by Iman Aganj on Feb 6, 2023

Main Folder documentation

MICCAI paper posted by Iman Aganj on Oct 17, 2020

Recent Activity - Forums

open-discussion forum

Welcome to Open-Discussion posted by Iman Aganj on Mar 1, 2017

Recent Activity - Files

msi-register: Linux 64-bit binary release

MSI_CLI_bin_linux64.zip posted by Iman Aganj on Apr 17, 2017

msi-register: Windows 64-bit binary release

MSI_CLI_bin_win64.zip posted by Iman Aganj on Apr 17, 2017

msi-register: Matlab codes release

https://www.mathworks.com/matlabcentral/mlc-downloads/downloads/13d72ba6-4688-4ff3-b0cf-40535fb0175e/d75ab715-beb1-4964-b9b2-bbe5f3f6b8a3/packages/zip posted by Iman Aganj on Feb 1, 2017

Statistics more information

Home Page

Funding: National Institutes of Health (NIH), specifically the NIDDK (K01DK101631) and the NIA (RF1AG068261), as well as the BrightFocus Foundation (A2016172S).

Computational resources for the experiments were provided through NIH Shared Instrumentation Grants (S10RR023401, S10RR019307, S10RR023043, S10RR028832), Microsoft Azure for Research awards, and an NVIDIA Corporation GPU Grant.

Documents: 4

PubMed Mentions: 0

Forums: 1 messages in 1 forum

Tracker: 0 open / 0 total

Total Downloads: 960

Registered: Jan 15, 2017

Organization: Harvard Medical School / Massachusetts General Hospital

Center: Athinoula A. Martinos Center for Biomedical Imaging

Application Publications: 1