Hi CONN expertes,

I am currently trying to do my preprocessing using the conn_batch (there are some technical reasons, which don't want to explain here, but I cannot run the preprocessing via the GUI). So I've set up my CONN file via the GUI (import of the data etc.) and have written a MATLAB script, which should then be exectued by conn_batch, but I get some error messages at the moment. That's why I would like to get some feedback on my script here, so that it will work soon:

%prepare batch structure
clear BATCH;

%load project
BATCH.filename ='path/to/my/CONN/mat/file';

%insert command to use distributed processing
%printf " OPTS\n error = "STDERR"\n output = "STDOUT"\n executable = "SCRIPT"\n\n queue\n" > SCRIPT.sub && chmod a+x SCRIPT && condor_submit SCRIPT.sub

%defining of preprocessing steps
BATCH.Setup.preprocessing.steps = 'default_mni'; %use CONNs default pipeline
BATCH.Setup.preprocessing.sliceorder = 'interleaved (bottom-up)'; %select right slice order
BATCH.Setup.preprocessing.fwhm = 5; 
BATCH.parallel.profile = 'HTCondor computer cluster';
BATCH.parallel.N = 8; %how many parallel jobs
%BATCH.Setup.done = 1;
%BATCH.Setup.overwrite = 'Yes';%run batch script
conn_batch(BATCH)

When I run the script without the two lines about parallel jobs (BATCH.parallel.profile and BATCH.parallel.N), my script works perfectly fine. Do I need to re-write these two lines or do I need to un-comment the line starting "printf .." etc?

Thanks for your help!

Best,

Max