CONN : functional connectivity toolbox
CONN includes a rich set of connectivity analyses (seed-based correlations, ROI-to-ROI graph analyses, ICA, masked ICA, fc-MVPA, generalized PPI, ALFF, ICC, GCOR, LCOR, etc.) in a simple-to-use and powerful software package
CONN is available for resting state data (rsfMRI) as well as task-related designs. It covers the entire pipeline from raw fMRI data to hypothesis testing.
Highlights:
Comprehensive quality assurance methods/measures/displays (scrubbing/ART, CompCor/ICA/GSR denoising, GCOR/FD QC covariates)
Connectome-wide analyses (ICA, fc-MVPA)
Dynamic connectivity analyses (dyn-ICA)
FWE-control of connectivity matrices (NBS)
Non-parametric cluster-level statistics (permutation tests)
ANOVA, regression, longitudinal, and mixed designs
Parallelization options (SGE/Grid Engine, PBS/Torque, LSF, Slurm)
Mac/Windows/Linux/HPC
SPM8/SPM12
https://www.conn-toolbox.org
Execution Options
Specifications
Associations
Recent Activity - Forums
conn_withinbetweenROItest posted by Olivier Brown on May 2
HCP preprocessing batch posted by Zack Shan on May 1
demeaning of BOLD signal in ConnToolbox posted by alicee on Apr 30
RE: Job does not continue past "Step 5/7: Importing ROI data" posted by max345 on Apr 30
Sliding window length posted by jasminstein on Apr 30
Extracting First Level Values with Behavioral Analysis posted by Jennifer Siegel on Apr 30
RE: Issue Deleting/Adding ROIs posted by Katie Gibbs on Apr 29
Conn Toolbox Roi-file resolution posted by oihana on Apr 29
Recent Activity - News
Online CONN 2023 workshop starting soon posted by Alfonso Nieto-Castanon on Nov 9, 2023
CONN new release posted by Alfonso Nieto-Castanon on Mar 15, 2023
CONN new release posted by Alfonso Nieto-Castanon on Feb 18, 2020
New CONN release and tutorials posted by Alfonso Nieto-Castanon on Jun 27, 2017
CONN New Year News posted by Alfonso Nieto-Castanon on Jan 12, 2017
CONN new release (15f) posted by Alfonso Nieto-Castanon on Sep 25, 2015
Announcing Cincinnati CONN course (MGH/HST) posted by Alfonso Nieto-Castanon on Jun 9, 2015
CONN v.13n Released posted by Alfonso Nieto-Castanon on Jul 8, 2013
conn toolbox version 13 released posted by Alfonso Nieto-Castanon on Oct 31, 2011
Recent Activity - Files
conn22a.zip posted by Alfonso Nieto-Castanon on Mar 10, 2023
conn: older releases: conn v.21.a (last 2021 release) release
conn21a.zip posted by Alfonso Nieto-Castanon on Dec 31, 2021
conn: older releases: conn v.20.b (last 2020 release) release
conn20b.zip posted by Alfonso Nieto-Castanon on Dec 1, 2020
conn: older releases: conn v.19.c (last 2019 release) release
conn19c.zip posted by Alfonso Nieto-Castanon on Mar 14, 2020