Browse Forums

help

497 Subscribers

help > fmriprep import error

Showing 1-6 of 6 posts

fmriprep import error

Hi
I am trying to import an fmriprep dataset into CONN. While this has worked without any issues in the past, I am not getting this error below. Any help is appreciated! Thanks very much

ERROR DESCRIPTION:

Operands to the || and && operators must be convertible to logical scalar values.
Error in uigetputfile_helper/getFilterFileAndPath (line 293)
elseif ((~contains(file, '*')) && (~contains(ext, '*')) && ...
Error in uigetputfile_helper/parseArguments (line 157)
[dialog_filter, dialog_filename, dialog_pathname] = getFilterFileAndPath(dialog_filter);
Error in uigetputfile_helper (line 27)
[dialog_filter, dialog_title, dialog_filename, dialog_pathname, dialog_multiselect] = parseArguments();
Error in uiputfile (line 114)
[filename, pathname, filterindex] = uigetputfile_helper(1, varargin{:});
Error in conn (line 5295)
[filename,pathname]=uiputfile('conn_*.mat',strmsg,filename); saveas=true;
Error in conn (line 5553)
if conn('gui_setup_save','Enter new CONN project filename:'),
Error in conn_menumanager (line 124)
feval(CONN_MM.MENU{n0}.callback{n1}{1},CONN_MM.MENU{n0}.callback{n1}{2:end});
CONN22.a
SPM12 + DEM FieldMap MEEGtools art rfxplot
Matlab v.2019b
project: CONN22.a
spm @ C:\Softwares\spm12\spm12
conn @ C:\Softwares\spm12\spm12\toolbox\conn22a\conn

RE: fmriprep import error

Hi,

Not sure about this one, if you could please:

1) type in Matlab:
dbstop in conn.m at 5295

2) then re-run the procedure, and when Matlab stops and shows a sign "K>>" in the Matlab command window then type:
save temporalfile.mat
dbcont

and 3) send me the resulting temporalfile.mat file to help me debug this.

Best
Alfonso
Originally posted by pkumar:

RE: fmriprep import error

Thanks for your email.

Here is the temporalfile.mat

Attachment: temporalfile.mat

RE: fmriprep import error

Hi Alfonso

Do you have any updates on the below please?

Thanks

Poornima

Originally posted by pkumar:

Thanks for your email. Here is the temporalfile.mat

RE: fmriprep import error

Hi Poornima,

Sorry I don't see anything problematic in the temporalfile.mat file and the call to Matlab's uiputfile function with the same input arguments seems to work perfectly fine when I test it. Could you please type in your Matlab command-line the following:

[a,b]=uiputfile('conn_*.mat','Enter a new CONN project filename:','conn_project01.mat');

and seeing whether that works fine and/or produces the same error message?

Thanks

Alfonso

Originally posted by pkumar:

Hi Alfonso

Do you have any updates on the below please?

Thanks

Poornima

Originally posted by pkumar:

Thanks for your email. Here is the temporalfile.mat

RE: fmriprep import error

Hi everyone,

I got the same error as Poormina, and trying the command that Alfonso asked for gave me the same error.

We apparently solved it (thank you Isabelle Faillenot) by properly removing previous versions of CONN and SPM from the PATH.

Here is the script we call to launch the CONN Toolbox now:

rmpath(genpath('/soft/conn17'));
rmpath(genpath('/soft/conn18'));
rmpath(genpath('/soft/conn20'));
rmpath(genpath('/soft/spm8'));
rmpath(genpath('/soft/conn21'));
rmpath(genpath('/soft/conn22a'));

addpath('/soft/');
addpath('/soft/spm12');
addpath('/soft/conn22v2407/conn');
rmpath(genpath('/soft/spm12/toolbox/conn'));

disp ('telechargement CONN22 : août 24 ');
disp (' ');
disp ('script pour le CRNL par Isabelle Faillenot');

conn

Hopefully it would be useful to anyone getting the same error.

Regards,

Louis