help > Error using svd SVD did not converge.
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Aug 4, 2024  07:08 AM | Yuan Cao - Jena University Hospital
Error using svd SVD did not converge.

Hi expert,


I got the following error at the first level of denoising when I got to 51 objects. 


Error:


Step 5/6: preprocessing voxel-to-voxel covariance
ERROR DESCRIPTION:
 
Error using svd
SVD did not converge.
Error in conn_process (line 1917)
 [Q1,D]=svd(Cy); % Q1*D*Q1 = Ctt (time-by-time covariance matrix; note:unit variance timeseries)
Error in conn_process (line 69)
 case {'preprocessing_gui','denoising_gui'}, conn_disp(['CONN: RUNNING DENOISING STEP']); conn_process([1.5,2,6:9],varargin{:});
Error in conn (line 7024)
 else conn_process('denoising_gui'); ispending=false;
Error in conn_menumanager (line 124)
 feval(CONN_MM.MENU{n0}.callback{n1}{1},CONN_MM.MENU{n0}.callback{n1}{2:end}); 
CONN22.a
SPM12 + DAiSS DEM FieldMap MEEGtools
Matlab v.2018a
project: CONN22.a
storage: 2148.7Gb available
 
spm @ /media/**/**/toolbox/spm12
conn @ /media/**/**/toolbox/conn22a/conn


 


Thanks,


Yuan

Aug 6, 2024  10:08 PM | Alfonso Nieto-Castanon - Boston University
RE: Error using svd SVD did not converge.

Hi Yuan


I am not sure about this one, could you check whether there is anything unusual about subject #51 data before denoising? (e.g. it may have zero or negative degrees of freedom, it may have no or very few voxels in gray matter, etc.)


Best


Alfonso


Originally posted by Yuan Cao:



Hi expert,


I got the following error at the first level of denoising when I got to 51 objects. 


Error:


Step 5/6: preprocessing voxel-to-voxel covariance
ERROR DESCRIPTION:
 
Error using svd
SVD did not converge.
Error in conn_process (line 1917)
 [Q1,D]=svd(Cy); % Q1*D*Q1 = Ctt (time-by-time covariance matrix; note:unit variance timeseries)
Error in conn_process (line 69)
 case {'preprocessing_gui','denoising_gui'}, conn_disp(['CONN: RUNNING DENOISING STEP']); conn_process([1.5,2,6:9],varargin{:});
Error in conn (line 7024)
 else conn_process('denoising_gui'); ispending=false;
Error in conn_menumanager (line 124)
 feval(CONN_MM.MENU{n0}.callback{n1}{1},CONN_MM.MENU{n0}.callback{n1}{2:end}); 
CONN22.a
SPM12 + DAiSS DEM FieldMap MEEGtools
Matlab v.2018a
project: CONN22.a
storage: 2148.7Gb available
 
spm @ /media/**/**/toolbox/spm12
conn @ /media/**/**/toolbox/conn22a/conn


 


Thanks,


Yuan



 

Aug 7, 2024  10:08 AM | Yuan Cao - Jena University Hospital
RE: Error using svd SVD did not converge.
Hi Alfonso,

Thank you for your reply. FYI, I've solved this problem by changing Matlab 2018a to 2022b.

 

Yuan