Hi,

I downloaded CMTK-3.3.2-Linux-x86_64.tar.gz

When I tried to use cmtk I got glibc related issues:

/lib64/libm.so.6: version `GLIBC_2.29'

/lib64/libc.so.6: version `GLIBC_2.33'

/lib64/libc.so.6: version `GLIBC_2.34'

So I built glibc 2.34.

When running cmtk I am getting a segmentation fault core dumped problem.

LD_PRELOAD="/projects/kefo9343/glibc-2.34/glibc-build/lib/libm.so.6 /projects/kefo9343/glibc-2.34/glibc-build/lib/libc.so.6 /projects/kefo9343/glibc-2.34/glibc-build/lib/li
bdl.so.2" cmtk avg_adm 
Segmentation fault (core dumped)

Do you have any suggestion?

All the best

Well, rather than build glibc, I would suggest you just build CMTK from scratch instead. Just get the "Source" archive from the Downloads section here, unpack, configure using cmake, and build. Let me know if you run into any trouble.

Originally posted by Torsten Rohlfing:

Well, rather than build glibc, I would suggest you just build CMTK from scratch instead. Just get the "Source" archive from the Downloads section here, unpack, configure using cmake, and build. Let me know if you run into any trouble.

see this thread for some details of how to compile https://www.nitrc.org/forum/forum.php?th... The instructions need to be followed carefully see e.g. the bottom of this thread: https://www.nitrc.org/forum/forum.php?th...

Best,

Greg.

Yeah building it from scratch with the procedure below seems to have solved the problem.

Thank you so much!

1. Untar the compressed tarball file:
tar -xzvf CMTK-3.3.2-Source.tar.gz

2. Rename the package core
mv CMTK-3.3.2-Source.tar.gz core

3. Create build directory and cd:
mkdir build;cd build

4. Load cmake v 3.25.0, gcc v10.3.0 and fftw v3.3.10:
module load cmake gcc/10.3.0 fftw/3.3.10

5. Configure with cmake:
cmake -C ../core/config/gcc-x86_64-sse.cmake -DCMAKE_BUILD_TYPE=Release -DBUILD_TESTING=OFF -
DBUILD_CONTRIB=ON -DBUILD_CONTRIB_MUNGER=ON -
DFFTW_DIR=/curc/sw/install/fftw/3.3.10/gcc/10.3.0 -
DFFTW_INCLUDE_PATH=/curc/sw/install/fftw/3.3.10/gcc/10.3.0/include -
DFFTWD_THREADS_LIB=/curc/sw/install/fftw/3.3.10/gcc/10.3.0/lib/libfftw3_threads.so.3 -
DFFTWD_OMP_LIB=/curc/sw/install/fftw/3.3.10/gcc/10.3.0/lib/libfftw3_omp.so.3 -
DCMAKE_INSTALL_PREFIX=/scratch/alpine/kefo9343/nitrc/build ../core/

6. Run make:
make –j 4

7. Install
make install

8. Make package that is compatible with all the specific system versions

cpack -G RPM

9. Go to the bin directory and add the path
cd bin; PATH=${PATH}:$(pwd)

10. Add the PATH to your ~/.bashrc as well