PubMed Mentions

The links below are to publications on PubMed referring to Computational Morphometry Toolkit (CMTK). This list is gathered weekly from PubMed automatically.

Publication/References
A mutual information approach to automate identification of neuronal clusters in Drosophila brain images. Description: Masse, Nicolas Y, et al. A mutual information approach to automate identification of neuronal clusters in Drosophila brain images. ''Front Neuroinform''. 2012; '''6''': 21
A bidirectional circuit switch reroutes pheromone signals in male and female brains. Description: Kohl, Johannes, et al. A bidirectional circuit switch reroutes pheromone signals in male and female brains. ''Cell''. 2013 Dec 19; '''155''' (7):1610-23
Central neural circuitry mediating courtship song perception in male Drosophila. Description: Zhou, Chuan, et al. Central neural circuitry mediating courtship song perception in male Drosophila. ''Elife''. 2015 Sep 21; '''4''':
High-precision registration between zebrafish brain atlases using symmetric diffeomorphic normalization. Description: Marquart, Gregory D, et al. High-precision registration between zebrafish brain atlases using symmetric diffeomorphic normalization. ''Gigascience''. 2017 Aug 1; '''6''' (8):1-15
Whole-Brain Calcium Imaging Reveals an Intrinsic Functional Network in Drosophila. Description: Mann, Kevin, et al. Whole-Brain Calcium Imaging Reveals an Intrinsic Functional Network in Drosophila. ''Curr Biol''. 2017 Aug 7; '''27''' (15):2389-2396.e4
A profile of auditory-responsive neurons in the larval zebrafish brain. Description: Vanwalleghem, Gilles, et al. A profile of auditory-responsive neurons in the larval zebrafish brain. ''J Comp Neurol''. 2017 Oct 1; '''525''' (14):3031-3043
Luminance Changes Drive Directional Startle through a Thalamic Pathway. Description: Heap, Lucy A L, et al. Luminance Changes Drive Directional Startle through a Thalamic Pathway. ''Neuron''. 2018 Jul 25; '''99''' (2):293-301.e4
Threshold-Based Ordering of Sequential Actions during Drosophila Courtship. Description: McKellar, Claire E, et al. Threshold-Based Ordering of Sequential Actions during Drosophila Courtship. ''Curr Biol''. 2019 Feb 4; '''29''' (3):426-434.e6
Neural Evolution of Context-Dependent Fly Song. Description: Ding, Yun, et al. Neural Evolution of Context-Dependent Fly Song. ''Curr Biol''. 2019 Apr 1; '''29''' (7):1089-1099.e7
Layered roles of fruitless isoforms in specification and function of male aggression-promoting neurons in Drosophila. Description: Wohl, Margot, et al. Layered roles of fruitless isoforms in specification and function of male aggression-promoting neurons in Drosophila. ''Elife''. 2020 Apr 21; '''9''':
Sex-determining genes distinctly regulate courtship capability and target preference via sexually dimorphic neurons. Description: Ishii, Kenichi, et al. Sex-determining genes distinctly regulate courtship capability and target preference via sexually dimorphic neurons. ''Elife''. 2020 Apr 21; '''9''':
Controlling motor neurons of every muscle for fly proboscis reaching. Description: McKellar, Claire E, et al. Controlling motor neurons of every muscle for fly proboscis reaching. ''Elife''. 2020 Jun 25; '''9''':
Erasable labeling of neuronal activity using a reversible calcium marker. Description: Sha, Fern, et al. Erasable labeling of neuronal activity using a reversible calcium marker. ''Elife''. 2020 Sep 15; '''9''':
Classification and genetic targeting of cell types in the primary taste and premotor center of the adult Drosophila brain. Description: Sterne, Gabriella R, et al. Classification and genetic targeting of cell types in the primary taste and premotor center of the adult Drosophila brain. ''Elife''. 2021 Sep 2; '''10''':
Drosophila gustatory projections are segregated by taste modality and connectivity. Description: Engert, Stefanie, et al. Drosophila gustatory projections are segregated by taste modality and connectivity. ''Elife''. 2022 May 25; '''11''':
Excitatory nucleo-olivary pathway shapes cerebellar outputs for motor control. Description: Wang, Xiaolu, et al. Excitatory nucleo-olivary pathway shapes cerebellar outputs for motor control. ''Nat Neurosci''. 2023 Aug; '''26''' (8):1394-1406
Mitochondrial proteins encoded by the 22q11.2 neurodevelopmental locus regulate neural stem and progenitor cell proliferation. Description: Campbell, Philip D, et al. Mitochondrial proteins encoded by the 22q11.2 neurodevelopmental locus regulate neural stem and progenitor cell proliferation. ''Mol Psychiatry''. 2023 Sep; '''28''' (9):3769-3781
A modular circuit architecture coordinates the diversification of courtship strategies in Drosophila. Description: Coleman, Rory T, et al. A modular circuit architecture coordinates the diversification of courtship strategies in Drosophila. ''bioRxiv''. 2023 Sep 17;
Dimensionality reduction reveals separate translation and rotation populations in the zebrafish hindbrain. Description: Feierstein, Claudia E, et al. Dimensionality reduction reveals separate translation and rotation populations in the zebrafish hindbrain. ''Curr Biol''. 2023 Sep 25; '''33''' (18):3911-3925.e6
The preoptic area and dorsal habenula jointly support homeostatic navigation in larval zebrafish. Description: Palieri, Virginia, et al. The preoptic area and dorsal habenula jointly support homeostatic navigation in larval zebrafish. ''Curr Biol''. 2024 Feb 5; '''34''' (3):489-504.e7
Male cuticular pheromones stimulate removal of the mating plug and promote re-mating through pC1 neurons in Drosophila females. Description: Yun, Minsik, et al. Male cuticular pheromones stimulate removal of the mating plug and promote re-mating through pC1 neurons in Drosophila females. ''Elife''. 2024 Sep 10; '''13''':