Hi, 

I have downloaded CMTK-3.3.2-Source.tar.gz and I am trying to build it from source. Our HPC cluster is Red Hat Enterprise Linux 8.7 (Ootpa). 

My cmake version is 3.25.6, my gcc version is 11.2.0.7, my fftw version is 3.3.10.8. I used the following cmake command: 

cmake -C ../core/config/gcc-x86_64-sse.cmake -DCMAKE_INSTALL_PREFIX=/projects/kfotso@xsede.org/nitrc/nitrc_install -DDCMTK_config_INCLUDE_DIR=/projects/kfotso@xsede.org/nitrc/dcmtk-install/include/dcmtk/config/ -DDCMTK_ofstd_INCLUDE_DIR=/projects/kfotso@xsede.org/nitrc/dcmtk-install/include/dcmtk/ofstd -DDCMTK_dcmdata_INCLUDE_DIR=/projects/kfotso@xsede.org/nitrc/dcmtk-install/include/dcmtk/dcmdata -DDCMTK_dcmimgle_INCLUDE_DIR=/projects/kfotso@xsede.org/nitrc/dcmtk-install/include/dcmtk/dcmimgle -DDCMTK_ofstd_LIBRARY=/projects/kfotso@xsede.org/nitrc/dcmtk-install/lib -DDCMTK_dcmdata_LIBRARY=/projects/kfotso@xsede.org/nitrc/dcmtk-install/lib -DDCMTK_dcmimgle_LIBRARY=/projects/kfotso@xsede.org/nitrc/dcmtk-install/lib -DDCMTK_DCMDICTPATH=/projects/kfotso@xsede.org/nitrc/dcmtk-install/share/dcmtk/dicom.dic -DMXML_INCLUDE_DIR=/projects/kfotso@xsede.org/nitrc/mxml_install/include -DMXML_LIBRARY=/projects/kfotso@xsede.org/nitrc/mxml_install/lib -DFFTW_DIR=/curc/sw/install/fftw/3.3.10/gcc/11.2.0 -DFFTW_INCLUDE_PATH=/curc/sw/install/fftw/3.3.10/gcc/11.2.0/include -DFFTWD_THREADS_LIB=/curc/sw/install/fftw/3.3.10/gcc/11.2.0/lib/libfftw3_threads.so.3 -DFFTWD_OMP_LIB=/curc/sw/install/fftw/3.3.10/gcc/11.2.0/lib/libfftw3_omp.so.3 ../core

When running make, I got the following error:

/curc/sw/install/gcc/11.2.0/include/c++/11.2.0/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
/projects/kfotso@xsede.org/nitrc/core/libs/IO/cmtkImageFileDICOM.cxx:169:29: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
  169 |     this->m_Document = std::auto_ptr<DiDocument>(new DiDocument(this->m_Dataset.get(), this->m_Dataset->getOriginalXfer(), CIF_AcrNemaCompatibility));
      |                             ^~~~~~~~
In file included from /curc/sw/install/gcc/11.2.0/include/c++/11.2.0/bits/locale_conv.h:41,
                 from /curc/sw/install/gcc/11.2.0/include/c++/11.2.0/locale:43,
                 from /curc/sw/install/gcc/11.2.0/include/c++/11.2.0/iomanip:43,
                 from /projects/kfotso@xsede.org/nitrc/dcmtk-install/include/dcmtk/ofstd/ofstream.h:33,
                 from /projects/kfotso@xsede.org/nitrc/dcmtk-install/include/dcmtk/ofstd/oftypes.h:90,
                 from /projects/kfotso@xsede.org/nitrc/dcmtk-install/include/dcmtk/ofstd/ofvector.h:46,
                 from /projects/kfotso@xsede.org/nitrc/dcmtk-install/include/dcmtk/oflog/loglevel.h:35,
                 from /projects/kfotso@xsede.org/nitrc/dcmtk-install/include/dcmtk/oflog/logger.h:34,
                 from /projects/kfotso@xsede.org/nitrc/dcmtk-install/include/dcmtk/oflog/oflog.h:28,
                 from /projects/kfotso@xsede.org/nitrc/dcmtk-install/include/dcmtk/dcmdata/dctypes.h:27,
                 from /projects/kfotso@xsede.org/nitrc/dcmtk-install/include/dcmtk/dcmdata/dctk.h:28,
                 from /projects/kfotso@xsede.org/nitrc/core/libs/IO/cmtkImageFileDICOM.h:43,
                 from /projects/kfotso@xsede.org/nitrc/core/libs/IO/cmtkImageFileDICOM.cxx:33:
/curc/sw/install/gcc/11.2.0/include/c++/11.2.0/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
/projects/kfotso@xsede.org/nitrc/core/libs/IO/cmtkImageFileDICOM.cxx: In member function ‘void cmtk::ImageFileDICOM::DoFOV()’:
/projects/kfotso@xsede.org/nitrc/core/libs/IO/cmtkImageFileDICOM.cxx:252:55: error: invalid conversion from ‘DcmObject*’ to ‘DcmItem*’ [-fpermissive]
  252 |       if (this->m_Document->getValue(tagKey, pTmpInt, pObj) > 0) {
      |                                                       ^~~~
      |                                                       |
      |                                                       DcmObject*
In file included from /projects/kfotso@xsede.org/nitrc/core/libs/IO/cmtkImageFileDICOM.h:44,
                 from /projects/kfotso@xsede.org/nitrc/core/libs/IO/cmtkImageFileDICOM.cxx:33:
/projects/kfotso@xsede.org/nitrc/dcmtk-install/include/dcmtk/dcmimgle/didocu.h:295:37: note:   initializing argument 3 of ‘long unsigned int DiDocument::getValue(const DcmTagKey&, const Uint16*&, DcmItem*) cons
t’
  295 |                            DcmItem *item = NULL) const;
      |                                     ^
/projects/kfotso@xsede.org/nitrc/core/libs/IO/cmtkImageFileDICOM.cxx: In member function ‘void cmtk::ImageFileDICOM::DoAcquisitionMatrix()’:
/projects/kfotso@xsede.org/nitrc/core/libs/IO/cmtkImageFileDICOM.cxx:281:74: error: invalid conversion from ‘DcmObject*’ to ‘DcmItem*’ [-fpermissive]
  281 |       if (this->m_Document->getValue(DCM_AcquisitionMatrix, tmpDbl, dim, pObj) > 0)
      |                                                                          ^~~~
      |                                                                          |
      |                                                                          DcmObject*
In file included from /projects/kfotso@xsede.org/nitrc/core/libs/IO/cmtkImageFileDICOM.h:44,
                 from /projects/kfotso@xsede.org/nitrc/core/libs/IO/cmtkImageFileDICOM.cxx:33:
/projects/kfotso@xsede.org/nitrc/dcmtk-install/include/dcmtk/dcmimgle/didocu.h:226:37: note:   initializing argument 4 of ‘long unsigned int DiDocument::getValue(const DcmTagKey&, Uint16&, long unsigned int, Dc
mItem*, OFBool) const’
  226 |                            DcmItem *item = NULL,
      |                                     ^
make[2]: *** [libs/IO/CMakeFiles/cmtkIO.dir/build.make:202: libs/IO/CMakeFiles/cmtkIO.dir/cmtkImageFileDICOM.cxx.o] Error 1
make[1]: *** [CMakeFiles/Makefile2:4366: libs/IO/CMakeFiles/cmtkIO.dir/all] Error 2
make: *** [Makefile:166: all] Error 2

Do you have any suggestion?

Sincerely

The procedure below seems to have worked. Thanks!

1. Untar the compressed tarball file:
tar -xzvf CMTK-3.3.2-Source.tar.gz

2. Rename the package core
mv CMTK-3.3.2-Source.tar.gz core

3. Create build directory and cd:
mkdir build;cd build

4. Load cmake v 3.25.0, gcc v10.3.0 and fftw v3.3.10:
module load cmake gcc/10.3.0 fftw/3.3.10

5. Configure with cmake:
cmake -C ../core/config/gcc-x86_64-sse.cmake -DCMAKE_BUILD_TYPE=Release -DBUILD_TESTING=OFF -
DBUILD_CONTRIB=ON -DBUILD_CONTRIB_MUNGER=ON -
DFFTW_DIR=/curc/sw/install/fftw/3.3.10/gcc/10.3.0 -
DFFTW_INCLUDE_PATH=/curc/sw/install/fftw/3.3.10/gcc/10.3.0/include -
DFFTWD_THREADS_LIB=/curc/sw/install/fftw/3.3.10/gcc/10.3.0/lib/libfftw3_threads.so.3 -
DFFTWD_OMP_LIB=/curc/sw/install/fftw/3.3.10/gcc/10.3.0/lib/libfftw3_omp.so.3 -
DCMAKE_INSTALL_PREFIX=/scratch/alpine/kefo9343/nitrc/build ../core/

6. Run make:
make –j 4

7. Install
make install

8. Make package that is compatible with all the specific system versions

cpack -G RPM

9. Go to the bin directory and add the path
cd bin; PATH=${PATH}:$(pwd)

10. Add the PATH to your ~/.bashrc as well