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Mar 13, 2020 05:03 PM | Gabriele Russo
Use Atlas in FSL
Hi all,
I am not managing to use this Atlas using FSL (it is asking for an XML file that is not provided with the atlas actually)... Any suggestion on how to solve this?
Thanks in advance :)
Gabriele
I am not managing to use this Atlas using FSL (it is asking for an XML file that is not provided with the atlas actually)... Any suggestion on how to solve this?
Thanks in advance :)
Gabriele
Mar 15, 2020 07:03 PM | Eszter Agnes Papp
RE: Use Atlas in FSL
Dear Gabriele,
Could you check if the attached XML file works for you? Copy it in the same directory where you have the atlas volume (WHS_SD_rat_atlas_v3.nii.gz). This XML is for version 3 of the atlas, please let me know if you are using an earlier version.
All the best,
Eszter
Could you check if the attached XML file works for you? Copy it in the same directory where you have the atlas volume (WHS_SD_rat_atlas_v3.nii.gz). This XML is for version 3 of the atlas, please let me know if you are using an earlier version.
All the best,
Eszter
Mar 16, 2020 07:03 AM | Gabriele Russo
RE: Use Atlas in FSL
Dear Eszter,
Thanks a lot for the file.
I tried importing it but I get the error you can see in the attached image.
Originally posted by Eszter Agnes Papp:
Thanks a lot for the file.
I tried importing it but I get the error you can see in the attached image.
Originally posted by Eszter Agnes Papp:
Dear Gabriele,
Could you check if the attached XML file works for you? Copy it in the same directory where you have the atlas volume (WHS_SD_rat_atlas_v3.nii.gz). This XML is for version 3 of the atlas, please let me know if you are using an earlier version.
All the best,
Eszter
Could you check if the attached XML file works for you? Copy it in the same directory where you have the atlas volume (WHS_SD_rat_atlas_v3.nii.gz). This XML is for version 3 of the atlas, please let me know if you are using an earlier version.
All the best,
Eszter