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help > Preprocessing failed - maskscan missing / ART
Jun 27, 2014 02:06 PM | Matthias Heil
Preprocessing failed - maskscan missing / ART
Hello, I tried starting with CONN. Therefore I preprocessed my data
set via the "New" button. I used the default preprocessing pipeline
(first chosen, without fieldmaps) and pick 4 subjects with 3/1/1/1
sessions. It seems it stop at the outlier detection point. Those
files where created:
Errors of Conn
Last failed matlab job:
- u*.nii, wu*.nii, wwu*.nii, *_uw.mat, rp_*.txt exist for every session
- mean*.nii, wu*_sn.mat only for every 1st session
- art_regression_outliers_and_movement_wwu*.mat and art_regression_outliers_wwu*.mat only for the 1st session of the 1st subject
Errors of Conn
ERROR DESCRIPTION:
Reference to non-existent field 'maskscan'.Error in conn_art>savefile_Callback_SaveMask (line 1402)
for n1=setdiff(1:length(plotdata.maskscan),out_idx),Mask(plotdata.maskscan{n1})=0;endError in conn_art>art_OpeningFcn (line 526)
savefile_Callback_SaveMask(handles);Error in gui_mainfcn (line 221)
feval(gui_State.gui_OpeningFcn, gui_hFigure, [], guidata(gui_hFigure), varargin{:});Error in conn_art (line 129)
[varargout{1:nargout}] = gui_mainfcn(gui_State, varargin{:});Error in conn_setup_preproc (line 488)
h=conn_art('sess_file',matlabbatch{n}.art);Error in conn_setup_wizard (line 130)
conn_setup_preproc(steps,'multiplesteps',1,'dogui',OPTIONS.CONN_DISPLAY,'fwhm',OPTIONS.FWHM,'sliceorder',OPTIONS.SO,'structural_template',OPTIONS.STRUCTURAL_TEMPLATE,'functional_template',OPTIONS
Error in conn (line 1505)
conn_setup_wizard;Error in conn_menumanager (line 103)
feval(MM.MENU{n0}.callback{n1}{1},MM.MENU{n0}.callback{n1}{2:end});CONN v.14.h
SPM8 + Beamforming DEM FieldMap MEEGtools rfxplot xjview
Matlab v.2012a
Reference to non-existent field 'maskscan'.Error in conn_art>savefile_Callback_SaveMask (line 1402)
for n1=setdiff(1:length(plotdata.maskscan),out_idx),Mask(plotdata.maskscan{n1})=0;endError in conn_art>art_OpeningFcn (line 526)
savefile_Callback_SaveMask(handles);Error in gui_mainfcn (line 221)
feval(gui_State.gui_OpeningFcn, gui_hFigure, [], guidata(gui_hFigure), varargin{:});Error in conn_art (line 129)
[varargout{1:nargout}] = gui_mainfcn(gui_State, varargin{:});Error in conn_setup_preproc (line 488)
h=conn_art('sess_file',matlabbatch{n}.art);Error in conn_setup_wizard (line 130)
conn_setup_preproc(steps,'multiplesteps',1,'dogui',OPTIONS.CONN_DISPLAY,'fwhm',OPTIONS.FWHM,'sliceorder',OPTIONS.SO,'structural_template',OPTIONS.STRUCTURAL_TEMPLATE,'functional_template',OPTIONS
Error in conn (line 1505)
conn_setup_wizard;Error in conn_menumanager (line 103)
feval(MM.MENU{n0}.callback{n1}{1},MM.MENU{n0}.callback{n1}{2:end});CONN v.14.h
SPM8 + Beamforming DEM FieldMap MEEGtools rfxplot xjview
Matlab v.2012a
Last failed matlab job:
------------------------------------------------------------------------
Running job #1
------------------------------------------------------------------------
Running 'Normalise: Estimate & Write'
Smoothing by 0 & 8mm..
Coarse Affine Registration..
Fine Affine Registration..
3D CT Norm...
iteration 1: FWHM = 27.86 Var = 124.396
iteration 2: FWHM = 17.96 Var = 8.27415
iteration 3: FWHM = 17.25 Var = 6.12014
iteration 4: FWHM = 16.73 Var = 5.349
iteration 5: FWHM = 16.48 Var = 5.01519
iteration 6: FWHM = 16.37 Var = 4.8851
iteration 7: FWHM = 16.3 Var = 4.82372
iteration 8: FWHM = 16.24 Var = 4.76665
iteration 9: FWHM = 16.19 Var = 4.72026
iteration 10: FWHM = 16.16 Var = 4.68542
iteration 11: FWHM = 16.13 Var = 4.66258
iteration 12: FWHM = 16.12 Var = 4.64926
iteration 13: FWHM = 16.12 Var = 4.64665
iteration 14: FWHM = 16.11 Var = 4.64288
iteration 15: FWHM = 16.11 Var = 4.64027
iteration 16: FWHM = 16.11 Var = 4.63839
Saving Parameters..
Smoothing by 0 & 8mm..
Coarse Affine Registration..
Fine Affine Registration..
3D CT Norm...
iteration 1: FWHM = 26.73 Var = 115.332
iteration 2: FWHM = 17.39 Var = 7.81175
iteration 3: FWHM = 16.68 Var = 5.87028
iteration 4: FWHM = 16.38 Var = 5.26361
iteration 5: FWHM = 16.26 Var = 5.05907
iteration 6: FWHM = 16.21 Var = 4.95373
iteration 7: FWHM = 16.12 Var = 4.85073
iteration 8: FWHM = 16.06 Var = 4.79242
iteration 9: FWHM = 16.01 Var = 4.74805
iteration 10: FWHM = 15.99 Var = 4.72754
iteration 11: FWHM = 15.97 Var = 4.71237
iteration 12: FWHM = 15.96 Var = 4.70056
iteration 13: FWHM = 15.94 Var = 4.68986
iteration 14: FWHM = 15.93 Var = 4.67964
iteration 15: FWHM = 15.92 Var = 4.6676
iteration 16: FWHM = 15.91 Var = 4.66361
Saving Parameters..
Smoothing by 0 & 8mm..
Coarse Affine Registration..
Fine Affine Registration..
3D CT Norm...
iteration 1: FWHM = 30.17 Var = 206.495
iteration 2: FWHM = 18.68 Var = 9.40674
iteration 3: FWHM = 18.28 Var = 7.23369
iteration 4: FWHM = 17.71 Var = 6.25126
iteration 5: FWHM = 17.46 Var = 5.86312
iteration 6: FWHM = 17.37 Var = 5.71523
iteration 7: FWHM = 17.25 Var = 5.57014
iteration 8: FWHM = 17.22 Var = 5.52131
iteration 9: FWHM = 17.19 Var = 5.49256
iteration 10: FWHM = 17.16 Var = 5.46073
iteration 11: FWHM = 17.15 Var = 5.44802
iteration 12: FWHM = 17.15 Var = 5.44655
iteration 13: FWHM = 17.14 Var = 5.43694
iteration 14: FWHM = 17.13 Var = 5.42972
iteration 15: FWHM = 17.12 Var = 5.42429
iteration 16: FWHM = 17.12 Var = 5.42069
Saving Parameters..
Smoothing by 0 & 8mm..
Coarse Affine Registration..
Fine Affine Registration..
3D CT Norm...
iteration 1: FWHM = 29.93 Var = 200.77
iteration 2: FWHM = 19.25 Var = 11.4981
iteration 3: FWHM = 18.68 Var = 8.71469
iteration 4: FWHM = 18.14 Var = 7.61433
iteration 5: FWHM = 17.85 Var = 7.13709
iteration 6: FWHM = 17.71 Var = 6.927
iteration 7: FWHM = 17.62 Var = 6.7965
iteration 8: FWHM = 17.56 Var = 6.71982
iteration 9: FWHM = 17.52 Var = 6.66441
iteration 10: FWHM = 17.5 Var = 6.63549
iteration 11: FWHM = 17.47 Var = 6.6075
iteration 12: FWHM = 17.46 Var = 6.58986
iteration 13: FWHM = 17.44 Var = 6.56891
iteration 14: FWHM = 17.43 Var = 6.55907
iteration 15: FWHM = 17.42 Var = 6.54345
iteration 16: FWHM = 17.42 Var = 6.53812
Saving Parameters..
Done 'Normalise: Estimate & Write'
Done
Error using struct2handle
Undefined function 'art' for input arguments of type 'char'.
Error using struct2handle
Error while evaluating uicontrol CreateFcn
Error using struct2handle
Undefined function 'art' for input arguments of type 'char'.
Error using struct2handle
Error while evaluating uicontrol CreateFcn
Error using struct2handle
Undefined function 'art' for input arguments of type 'char'.
Error using struct2handle
Error while evaluating uicontrol CreateFcn
Error using struct2handle
Undefined function 'art' for input arguments of type 'char'.
Error using struct2handle
Error while evaluating uicontrol CreateFcn
P =
[1600x90 char] [1600x93 char] [1600x93 char]
M =
[1x90 char] [1x93 char] [1x93 char]
Mapping files for session 1...: ...done
Calculating globals...: 1600/1600...done
Session 1 global statistics - mean: 190.4933 stdv: 0.8606
Outlier detection: 0 identified outliers
Statistics of movement data:
x y z pitch roll yaw norm
mean 0.0017 0.0048 0.0101 0.0001 0.0001 0.0000 0.0197
stdv 0.0035 0.0098 0.0209 0.0002 0.0001 0.0001 0.0343
max 0.0384 0.1148 0.2002 0.0022 0.0019 0.0007 0.3380
Saving SPM regressor file /data/.../art_regression_outliers_wwu....mat and /data/.../art_regression_outliers_and_movement_wwu....mat
Undefined function 'art' for input arguments of type 'struct'.
Error while evaluating uicontrol Callback
Undefined function 'art' for input arguments of type 'struct'.
Error while evaluating uicontrol Callback
Running job #1
------------------------------------------------------------------------
Running 'Normalise: Estimate & Write'
Smoothing by 0 & 8mm..
Coarse Affine Registration..
Fine Affine Registration..
3D CT Norm...
iteration 1: FWHM = 27.86 Var = 124.396
iteration 2: FWHM = 17.96 Var = 8.27415
iteration 3: FWHM = 17.25 Var = 6.12014
iteration 4: FWHM = 16.73 Var = 5.349
iteration 5: FWHM = 16.48 Var = 5.01519
iteration 6: FWHM = 16.37 Var = 4.8851
iteration 7: FWHM = 16.3 Var = 4.82372
iteration 8: FWHM = 16.24 Var = 4.76665
iteration 9: FWHM = 16.19 Var = 4.72026
iteration 10: FWHM = 16.16 Var = 4.68542
iteration 11: FWHM = 16.13 Var = 4.66258
iteration 12: FWHM = 16.12 Var = 4.64926
iteration 13: FWHM = 16.12 Var = 4.64665
iteration 14: FWHM = 16.11 Var = 4.64288
iteration 15: FWHM = 16.11 Var = 4.64027
iteration 16: FWHM = 16.11 Var = 4.63839
Saving Parameters..
Smoothing by 0 & 8mm..
Coarse Affine Registration..
Fine Affine Registration..
3D CT Norm...
iteration 1: FWHM = 26.73 Var = 115.332
iteration 2: FWHM = 17.39 Var = 7.81175
iteration 3: FWHM = 16.68 Var = 5.87028
iteration 4: FWHM = 16.38 Var = 5.26361
iteration 5: FWHM = 16.26 Var = 5.05907
iteration 6: FWHM = 16.21 Var = 4.95373
iteration 7: FWHM = 16.12 Var = 4.85073
iteration 8: FWHM = 16.06 Var = 4.79242
iteration 9: FWHM = 16.01 Var = 4.74805
iteration 10: FWHM = 15.99 Var = 4.72754
iteration 11: FWHM = 15.97 Var = 4.71237
iteration 12: FWHM = 15.96 Var = 4.70056
iteration 13: FWHM = 15.94 Var = 4.68986
iteration 14: FWHM = 15.93 Var = 4.67964
iteration 15: FWHM = 15.92 Var = 4.6676
iteration 16: FWHM = 15.91 Var = 4.66361
Saving Parameters..
Smoothing by 0 & 8mm..
Coarse Affine Registration..
Fine Affine Registration..
3D CT Norm...
iteration 1: FWHM = 30.17 Var = 206.495
iteration 2: FWHM = 18.68 Var = 9.40674
iteration 3: FWHM = 18.28 Var = 7.23369
iteration 4: FWHM = 17.71 Var = 6.25126
iteration 5: FWHM = 17.46 Var = 5.86312
iteration 6: FWHM = 17.37 Var = 5.71523
iteration 7: FWHM = 17.25 Var = 5.57014
iteration 8: FWHM = 17.22 Var = 5.52131
iteration 9: FWHM = 17.19 Var = 5.49256
iteration 10: FWHM = 17.16 Var = 5.46073
iteration 11: FWHM = 17.15 Var = 5.44802
iteration 12: FWHM = 17.15 Var = 5.44655
iteration 13: FWHM = 17.14 Var = 5.43694
iteration 14: FWHM = 17.13 Var = 5.42972
iteration 15: FWHM = 17.12 Var = 5.42429
iteration 16: FWHM = 17.12 Var = 5.42069
Saving Parameters..
Smoothing by 0 & 8mm..
Coarse Affine Registration..
Fine Affine Registration..
3D CT Norm...
iteration 1: FWHM = 29.93 Var = 200.77
iteration 2: FWHM = 19.25 Var = 11.4981
iteration 3: FWHM = 18.68 Var = 8.71469
iteration 4: FWHM = 18.14 Var = 7.61433
iteration 5: FWHM = 17.85 Var = 7.13709
iteration 6: FWHM = 17.71 Var = 6.927
iteration 7: FWHM = 17.62 Var = 6.7965
iteration 8: FWHM = 17.56 Var = 6.71982
iteration 9: FWHM = 17.52 Var = 6.66441
iteration 10: FWHM = 17.5 Var = 6.63549
iteration 11: FWHM = 17.47 Var = 6.6075
iteration 12: FWHM = 17.46 Var = 6.58986
iteration 13: FWHM = 17.44 Var = 6.56891
iteration 14: FWHM = 17.43 Var = 6.55907
iteration 15: FWHM = 17.42 Var = 6.54345
iteration 16: FWHM = 17.42 Var = 6.53812
Saving Parameters..
Done 'Normalise: Estimate & Write'
Done
Error using struct2handle
Undefined function 'art' for input arguments of type 'char'.
Error using struct2handle
Error while evaluating uicontrol CreateFcn
Error using struct2handle
Undefined function 'art' for input arguments of type 'char'.
Error using struct2handle
Error while evaluating uicontrol CreateFcn
Error using struct2handle
Undefined function 'art' for input arguments of type 'char'.
Error using struct2handle
Error while evaluating uicontrol CreateFcn
Error using struct2handle
Undefined function 'art' for input arguments of type 'char'.
Error using struct2handle
Error while evaluating uicontrol CreateFcn
P =
[1600x90 char] [1600x93 char] [1600x93 char]
M =
[1x90 char] [1x93 char] [1x93 char]
Mapping files for session 1...: ...done
Calculating globals...: 1600/1600...done
Session 1 global statistics - mean: 190.4933 stdv: 0.8606
Outlier detection: 0 identified outliers
Statistics of movement data:
x y z pitch roll yaw norm
mean 0.0017 0.0048 0.0101 0.0001 0.0001 0.0000 0.0197
stdv 0.0035 0.0098 0.0209 0.0002 0.0001 0.0001 0.0343
max 0.0384 0.1148 0.2002 0.0022 0.0019 0.0007 0.3380
Saving SPM regressor file /data/.../art_regression_outliers_wwu....mat and /data/.../art_regression_outliers_and_movement_wwu....mat
Undefined function 'art' for input arguments of type 'struct'.
Error while evaluating uicontrol Callback
Undefined function 'art' for input arguments of type 'struct'.
Error while evaluating uicontrol Callback
Threaded View
| Title | Author | Date |
|---|---|---|
| Matthias Heil | Jun 27, 2014 | |
| Alfonso Nieto-Castanon | Jul 2, 2014 | |
| Matthias Heil | Jul 17, 2014 | |
| Alfonso Nieto-Castanon | Jun 27, 2014 | |
| Matthias Heil | Jun 27, 2014 | |