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Dec 19, 2016 12:12 AM | Dan Xie - UCSF
Unit for registration
Hi Developers and Advanced Users,
I have a question regarding units of the images --- I got fluorescent image stacks from a light-sheet microscope and the FOV is ~ 600 microns. When saving the images as .nrrd files, I selected micron as the length unit. However, in the user guide, I see that the --grid-spacing option in the warp tool has a unit of mm (or is it just a number ?). Should I change my image metadata to replace micron units with mm, or I can just use it as it is? Thanks!
Best,
Dan
I have a question regarding units of the images --- I got fluorescent image stacks from a light-sheet microscope and the FOV is ~ 600 microns. When saving the images as .nrrd files, I selected micron as the length unit. However, in the user guide, I see that the --grid-spacing option in the warp tool has a unit of mm (or is it just a number ?). Should I change my image metadata to replace micron units with mm, or I can just use it as it is? Thanks!
Best,
Dan
Threaded View
| Title | Author | Date |
|---|---|---|
| Dan Xie | Dec 19, 2016 | |
| Greg Jefferis | Dec 19, 2016 | |
| Dan Xie | Dec 19, 2016 | |
| Greg Jefferis | Dec 19, 2016 | |
| Dan Xie | Dec 20, 2016 | |
| Greg Jefferis | Dec 20, 2016 | |
| Dan Xie | Jan 3, 2017 | |
| Greg Jefferis | Jan 3, 2017 | |