Hi,

Thanks for the response. I re-ran with SPM12 and am still receiving errors (below). I am not sure what's going wrong and how to fix - any ideas?

ERROR DESCRIPTION:

Error using MATLABbatch system
Job execution failed. The full log of this run can be found in MATLAB command window, starting with the lines (look for the line showing the exact #job as displayed in this error message)
------------------
Running job #1
------------------
CONN v.17.f
SPM12 + DEM FieldMap MEEGtools
Matlab v.2016b
storage: 42596.9Gb available
spm @ /apps/spm12/spm12
conn @ /apps/conn/conn

And this in the MATLAB command window:
========================================================================
Completed : 20:29:53 - 28/09/2017

SPM12: spm_uw_estimate (v6824) 20:29:53 - 28/09/2017
========================================================================
> In spm_uw_estimate (line 377)
In spm_run_realignunwarp (line 90)
In cfg_run_cm (line 29)
In cfg_util>local_runcj (line 1688)
In cfg_util (line 959)
In spm_jobman>fill_run_job (line 458)
In spm_jobman (line 247)
In conn_setup_preproc (line 1940)
In conn (line 894)
In conn_menumanager (line 120)
Warning: Matrix is singular to working precision.
Warning: Matrix is singular to working precision.
> In spm_uw_estimate>make_ref (line 746)
In spm_uw_estimate (line 352)
In spm_run_realignunwarp (line 90)
In cfg_run_cm (line 29)
In cfg_util>local_runcj (line 1688)
In cfg_util (line 959)
In spm_jobman>fill_run_job (line 458)
In spm_jobman (line 247)
In conn_setup_preproc (line 1940)
In conn (line 894)
In conn_menumanager (line 120)
> In spm_uw_estimate (line 377)
In spm_run_realignunwarp (line 90)
In cfg_run_cm (line 29)
In cfg_util>local_runcj (line 1688)
In cfg_util (line 959)
In spm_jobman>fill_run_job (line 458)
In spm_jobman (line 247)
In conn_setup_preproc (line 1940)
In conn (line 894)
In conn_menumanager (line 120)
Warning: Matrix is singular to working precision.
Warning: Matrix is singular to working precision.
> In spm_uw_estimate>make_ref (line 746)
In spm_uw_estimate (line 352)
In spm_run_realignunwarp (line 90)
In cfg_run_cm (line 29)
In cfg_util>local_runcj (line 1688)
In cfg_util (line 959)
In spm_jobman>fill_run_job (line 458)
In spm_jobman (line 247)
In conn_setup_preproc (line 1940)
In conn (line 894)
In conn_menumanager (line 120)
> In spm_uw_estimate (line 377)
In spm_run_realignunwarp (line 90)
In cfg_run_cm (line 29)
In cfg_util>local_runcj (line 1688)
In cfg_util (line 959)
In spm_jobman>fill_run_job (line 458)
In spm_jobman (line 247)
In conn_setup_preproc (line 1940)
In conn (line 894)
In conn_menumanager (line 120)
Warning: Matrix is singular to working precision.
Warning: Matrix is singular to working precision.
> In spm_uw_estimate>make_ref (line 746)
In spm_uw_estimate (line 352)
In spm_run_realignunwarp (line 90)
In cfg_run_cm (line 29)
In cfg_util>local_runcj (line 1688)
In cfg_util (line 959)
In spm_jobman>fill_run_job (line 458)
In spm_jobman (line 247)
In conn_setup_preproc (line 1940)
In conn (line 894)
In conn_menumanager (line 120)
> In spm_uw_estimate (line 377)
In spm_run_realignunwarp (line 90)
In cfg_run_cm (line 29)
In cfg_util>local_runcj (line 1688)
In cfg_util (line 959)
In spm_jobman>fill_run_job (line 458)
In spm_jobman (line 247)
In conn_setup_preproc (line 1940)
In conn (line 894)
In conn_menumanager (line 120)
Warning: Matrix is singular to working precision.
Warning: Matrix is singular to working precision.
> In spm_uw_estimate>make_ref (line 746)
In spm_uw_estimate (line 352)
In spm_run_realignunwarp (line 90)
In cfg_run_cm (line 29)
In cfg_util>local_runcj (line 1688)
In cfg_util (line 959)
In spm_jobman>fill_run_job (line 458)
In spm_jobman (line 247)
In conn_setup_preproc (line 1940)
In conn (line 894)
In conn_menumanager (line 120)
> In spm_uw_estimate (line 377)
In spm_run_realignunwarp (line 90)
In cfg_run_cm (line 29)
In cfg_util>local_runcj (line 1688)
In cfg_util (line 959)
In spm_jobman>fill_run_job (line 458)
In spm_jobman (line 247)
In conn_setup_preproc (line 1940)
In conn (line 894)
In conn_menumanager (line 120)
Warning: Matrix is singular to working precision.
Completed : 20:31:57 - 28/09/2017
SPM12: spm_uw_estimate (v6824) 20:31:57 - 28/09/2017
========================================================================
Completed : 20:32:50 - 28/09/2017
SPM12: spm_uw_apply (v6301) 20:32:50 - 28/09/2017
========================================================================
Computing mask... : Failed 'Realign & Unwarp'
Matrix dimensions must agree.
In file "/apps/spm12/spm12/spm_uw_apply.m" (v6301), function "spm_uw_apply" at line 229.
In file "/home/apps/spm12/spm12/config/spm_run_realignunwarp.m" (v6554), function "spm_run_realignunwarp" at line 98.
Running 'Realign & Unwarp'
SPM12: spm_realign (v6070) 20:32:52 - 28/09/2017
========================================================================
Completed : 20:33:30 - 28/09/2017
SPM12: spm_uw_estimate (v6824) 20:33:30 - 28/09/2017
========================================================================
Completed : 20:34:23 - 28/09/2017
SPM12: spm_uw_estimate (v6824) 20:34:24 - 28/09/2017
========================================================================
Completed : 20:35:17 - 28/09/2017
SPM12: spm_uw_apply (v6301) 20:35:17 - 28/09/2017
========================================================================
Computing mask... : ...done
Reslicing images... : ...done
Writing mean image... : ...done
Completed : 20:36:06 - 28/09/2017
Done 'Realign & Unwarp'
Running 'Realign & Unwarp'
SPM12: spm_realign (v6070) 20:36:06 - 28/09/2017
========================================================================
Completed : 20:36:46 - 28/09/2017
SPM12: spm_uw_estimate (v6824) 20:36:46 - 28/09/2017
========================================================================
Completed : 20:37:39 - 28/09/2017
SPM12: spm_uw_estimate (v6824) 20:37:39 - 28/09/2017
========================================================================