open-discussion
open-discussion > RE: Some images will notload in BIS web
Nov 21, 2018 07:11 PM | Larry Olson - Emory University
RE: Some images will notload in BIS web
Originally posted by Xenophon Papademetris:
They were then converted to .nii using Chris Rorden's dcm2nii (which also has never given trouble). Other programs like BrainSuite or MRIcron read them in just fine.
Thanks for looking. The new BIS Web is fabulous. I am definitely taking advantage of both the Web GUI and command line. But for now I am hoping to find a work around I can use to access the images from the BIS web command line which I use in a postprocessing pipeline. This is a real holdup for me. Interestingly, not all images acquired and converted in the same exact way give this trouble.
BTW- any chance there could be an image processing option to invert the image intensities? I have not been satisfied with SPM for this.
Thanks. We'll take a look. Where are these
images from? My hunch is that the headers are not complete and we
are being a little to fussy about that right now.
The images originated in as a dicom
download into a single folder from GE PACS. (never had trouble with
this before, and conversion of the same dicoms to Analyze format
using ImageJ gives no problem).They were then converted to .nii using Chris Rorden's dcm2nii (which also has never given trouble). Other programs like BrainSuite or MRIcron read them in just fine.
Thanks for looking. The new BIS Web is fabulous. I am definitely taking advantage of both the Web GUI and command line. But for now I am hoping to find a work around I can use to access the images from the BIS web command line which I use in a postprocessing pipeline. This is a real holdup for me. Interestingly, not all images acquired and converted in the same exact way give this trouble.
BTW- any chance there could be an image processing option to invert the image intensities? I have not been satisfied with SPM for this.
Threaded View
| Title | Author | Date |
|---|---|---|
| Larry Olson | Nov 21, 2018 | |
| Xenophon Papademetris | Nov 21, 2018 | |
| Larry Olson | Nov 21, 2018 | |
| Larry Olson | Nov 21, 2018 | |
| Xenophon Papademetris | Nov 23, 2018 | |
| Larry Olson | Nov 23, 2018 | |
| Xenophon Papademetris | Nov 23, 2018 | |
| Larry Olson | Nov 26, 2018 | |
| Xenophon Papademetris | Nov 26, 2018 | |
| Larry Olson | Nov 28, 2018 | |
| Xenophon Papademetris | Nov 28, 2018 | |
| Larry Olson | Nov 28, 2018 | |
| Larry Olson | Nov 23, 2018 | |