PubMed Mentions

The links below are to publications on PubMed referring to BioImage Suite. This list is gathered weekly from PubMed automatically.

Publication/References
Suppression of estrogen-dependent MMP-9 expression by Edpm5, a genetic locus for pituitary tumor growth in rat. Description: Sclafani, R V, et al. Suppression of estrogen-dependent MMP-9 expression by Edpm5, a genetic locus for pituitary tumor growth in rat. ''Mol Cell Endocrinol''. 2001 May 15; '''176''' (1-2):145-53
Ammonia prevents glutamate-induced but not low K(+)-induced apoptosis in cerebellar neurons in culture. Description: Llansola, M, et al. Ammonia prevents glutamate-induced but not low K(+)-induced apoptosis in cerebellar neurons in culture. ''Neuroscience''. 2003; '''117''' (4):899-907
Myo4p and She3p are required for cortical ER inheritance in Saccharomyces cerevisiae. Description: Estrada, Paula, et al. Myo4p and She3p are required for cortical ER inheritance in Saccharomyces cerevisiae. ''J Cell Biol''. 2003 Dec 22; '''163''' (6):1255-66
Bile duct ligation plus hyperammonemia in rats reproduces the alterations in the modulation of soluble guanylate cyclase by nitric oxide in brain of cirrhotic patients. Description: Rodrigo, R, et al. Bile duct ligation plus hyperammonemia in rats reproduces the alterations in the modulation of soluble guanylate cyclase by nitric oxide in brain of cirrhotic patients. ''Neuroscience''. 2005; '''130''' (2):435-43
Virtual histology of transgenic mouse embryos for high-throughput phenotyping. Description: Johnson, John T, et al. Virtual histology of transgenic mouse embryos for high-throughput phenotyping. ''PLoS Genet''. 2006 Apr; '''2''' (4):e61
Cytokines regulate matrix metalloproteinases and migration in cardiac fibroblasts. Description: Brown, R Dale, et al. Cytokines regulate matrix metalloproteinases and migration in cardiac fibroblasts. ''Biochem Biophys Res Commun''. 2007 Oct 12; '''362''' (1):200-205
Coarse electrocorticographic decoding of ipsilateral reach in patients with brain lesions. Description: Hotson, Guy, et al. Coarse electrocorticographic decoding of ipsilateral reach in patients with brain lesions. ''PLoS One''. 2014; '''9''' (12):e115236
Antimicrobial resistance of Campylobacter isolates from small scale and backyard chicken in Kenya. Description: Nguyen, Tuan Ngoc Minh, et al. Antimicrobial resistance of Campylobacter isolates from small scale and backyard chicken in Kenya. ''Gut Pathog''. 2016; '''8''' (1):39
Phylogeography of Arabidopsis halleri (Brassicaceae) in mountain regions of Central Europe inferred from cpDNA variation and ecological niche modelling. Description: Wasowicz, Pawel, et al. Phylogeography of Arabidopsis halleri (Brassicaceae) in mountain regions of Central Europe inferred from cpDNA variation and ecological niche modelling. ''PeerJ''. 2016; '''4''': e1645
The Effect of Electromagnetic Field Treatment on Recovery from Ischemic Stroke in a Rat Stroke Model: Clinical, Imaging, and Pathological Findings. Description: Segal, Y, et al. The Effect of Electromagnetic Field Treatment on Recovery from Ischemic Stroke in a Rat Stroke Model: Clinical, Imaging, and Pathological Findings. ''Stroke Res Treat''. 2016; '''2016''': 6941946
Methylphenidate Modulates Functional Network Connectivity to Enhance Attention. Description: Rosenberg, Monica D, et al. Methylphenidate Modulates Functional Network Connectivity to Enhance Attention. ''J Neurosci''. 2016 Sep 14; '''36''' (37):9547-57
Human intracranial recordings link suppressed transients rather than 'filling-in' to perceptual continuity across blinks. Description: Golan, Tal, et al. Human intracranial recordings link suppressed transients rather than 'filling-in' to perceptual continuity across blinks. ''Elife''. 2016 Sep 29; '''5''':
Telmisartan-mediated metabolic profile conferred brain protection in diabetic hypertensive rats as evidenced by magnetic resonance imaging, behavioral studies and histology. Description: Younis, Firas M, et al. Telmisartan-mediated metabolic profile conferred brain protection in diabetic hypertensive rats as evidenced by magnetic resonance imaging, behavioral studies and histology. ''Eur J Pharmacol''. 2016 Oct 15; '''789''': 88-97
An interspecies comparative study of invasive electrophysiological functional connectivity. Description: Casimo, Kaitlyn, et al. An interspecies comparative study of invasive electrophysiological functional connectivity. ''Brain Behav''. 2017 Dec; '''7''' (12):e00863
Exome-wide association study of plasma lipids in >300,000 individuals. Description: Liu, Dajiang J, et al. Exome-wide association study of plasma lipids in >300,000 individuals. ''Nat Genet''. 2017 Dec; '''49''' (12):1758-1766
Reduced Glutamate in the Medial Prefrontal Cortex Is Associated With Emotional and Cognitive Dysregulation in People With Chronic Pain. Description: Naylor, Brooke, et al. Reduced Glutamate in the Medial Prefrontal Cortex Is Associated With Emotional and Cognitive Dysregulation in People With Chronic Pain. ''Front Neurol''. 2019; '''10''': 1110
Cluster failure or power failure? Evaluating sensitivity in cluster-level inference. Description: Noble, Stephanie, et al. Cluster failure or power failure? Evaluating sensitivity in cluster-level inference. ''Neuroimage''. 2020 Apr 1; '''209''': 116468
A neurocognitive model of perceptual decision-making on emotional signals. Description: Dricu, Mihai, et al. A neurocognitive model of perceptual decision-making on emotional signals. ''Hum Brain Mapp''. 2020 Apr 15; '''41''' (6):1532-1556
Breakdown of the affective-cognitive network in functional dystonia. Description: Canu, Elisa, et al. Breakdown of the affective-cognitive network in functional dystonia. ''Hum Brain Mapp''. 2020 Aug 1; '''41''' (11):3059-3076
The phase of cortical oscillations determines the perceptual fate of visual cues in naturalistic audiovisual speech. Description: Theze, Raphael, et al. The phase of cortical oscillations determines the perceptual fate of visual cues in naturalistic audiovisual speech. ''Sci Adv''. 2020 Nov; '''6''' (45):
Dynamic functional connectivity analysis based on time-varying partial correlation with a copula-DCC-GARCH model. Description: Lee, Namgil, et al. Dynamic functional connectivity analysis based on time-varying partial correlation with a copula-DCC-GARCH model. ''Neurosci Res''. 2021 Aug; '''169''': 27-39
Automated Brain Masking of Fetal Functional MRI with Open Data. Description: Rutherford, Saige, et al. Automated Brain Masking of Fetal Functional MRI with Open Data. ''Neuroinformatics''. 2022 Jan; '''20''' (1):173-185
Variability of EEG electrode positions and their underlying brain regions: visualizing gel artifacts from a simultaneous EEG-fMRI dataset. Description: Scrivener, Catriona L, et al. Variability of EEG electrode positions and their underlying brain regions: visualizing gel artifacts from a simultaneous EEG-fMRI dataset. ''Brain Behav''. 2022 Feb; '''12''' (2):e2476
The "vestibular neuromatrix": A proposed, expanded vestibular network from graph theory in post-concussive vestibular dysfunction. Description: Smith, Jeremy L, et al. The "vestibular neuromatrix": A proposed, expanded vestibular network from graph theory in post-concussive vestibular dysfunction. ''Hum Brain Mapp''. 2022 Apr 1; '''43''' (5):1501-1518
Unsupervised learning of brain state dynamics during emotion imagination using high-density EEG. Description: Hsu, Sheng-Hsiou, et al. Unsupervised learning of brain state dynamics during emotion imagination using high-density EEG. ''Neuroimage''. 2022 Apr 1; '''249''': 118873
Antagonistic network signature of motor function in Parkinson's disease revealed by connectome-based predictive modeling. Description: Wang, Xuyang, et al. Antagonistic network signature of motor function in Parkinson's disease revealed by connectome-based predictive modeling. ''NPJ Parkinsons Dis''. 2022 Apr 22; '''8''' (1):49
Functional connectivity for the language network in the developing brain: 30 weeks of gestation to 30 months of age. Description: Scheinost, Dustin, et al. Functional connectivity for the language network in the developing brain: 30 weeks of gestation to 30 months of age. ''Cereb Cortex''. 2022 Jul 21; '''32''' (15):3289-3301
Arousal impacts distributed hubs modulating the integration of brain functional connectivity. Description: Lee, Kangjoo, et al. Arousal impacts distributed hubs modulating the integration of brain functional connectivity. ''Neuroimage''. 2022 Sep; '''258''': 119364
Brain-phenotype models fail for individuals who defy sample stereotypes. Description: Greene, Abigail S, et al. Brain-phenotype models fail for individuals who defy sample stereotypes. ''Nature''. 2022 Sep; '''609''' (7925):109-118
Formation of Three-Dimensional Spheres Enhances the Neurogenic Potential of Stem Cells from Apical Papilla. Description: Basabrain, Mohammed S, et al. Formation of Three-Dimensional Spheres Enhances the Neurogenic Potential of Stem Cells from Apical Papilla. ''Bioengineering (Basel)''. 2022 Oct 22; '''9''' (11):
In Vitro High-Throughput Genotoxicity Testing Using gammaH2AX Biomarker, Microscopy and Reproducible Automatic Image Analysis in ImageJ-A Pilot Study with Valinomycin. Description: Krizkovska, Bara, et al. In Vitro High-Throughput Genotoxicity Testing Using gammaH2AX Biomarker, Microscopy and Reproducible Automatic Image Analysis in ImageJ-A Pilot Study with Valinomycin. ''Toxins (Basel)''. 2023 Apr 1; '''15''' (4):
Sex-based structural and functional MRI outcomes in the rat brain after soman (GD) exposure-induced status epilepticus. Description: Gage, Meghan, et al. Sex-based structural and functional MRI outcomes in the rat brain after soman (GD) exposure-induced status epilepticus. ''Epilepsia Open''. 2023 Jun; '''8''' (2):399-410
Domain-general and domain-specific functional networks of Broca's area underlying language processing. Description: Bulut, Talat. Domain-general and domain-specific functional networks of Broca's area underlying language processing. ''Brain Behav''. 2023 Jul; '''13''' (7):e3046
Multimodal measures of spontaneous brain activity reveal both common and divergent patterns of cortical functional organization. Description: Vafaii, Hadi, et al. Multimodal measures of spontaneous brain activity reveal both common and divergent patterns of cortical functional organization. ''Nat Commun''. 2024 Jan 3; '''15''' (1):229
Brain-phenotype predictions can survive across diverse real-world data. Description: Adkinson, Brendan D, et al. Brain-phenotype predictions can survive across diverse real-world data. ''bioRxiv''. 2024 Jan 24;
Data leakage inflates prediction performance in connectome-based machine learning models. Description: Rosenblatt, Matthew, et al. Data leakage inflates prediction performance in connectome-based machine learning models. ''Nat Commun''. 2024 Feb 28; '''15''' (1):1829
VEGF-C prophylaxis favors lymphatic drainage and modulates neuroinflammation in a stroke model. Description: Boisserand, Ligia Simoes Braga, et al. VEGF-C prophylaxis favors lymphatic drainage and modulates neuroinflammation in a stroke model. ''J Exp Med''. 2024 Apr 1; '''221''' (4):
Semantic associative abilities and executive control functions predict novelty and appropriateness of idea generation. Description: Wang, Xueyang, et al. Semantic associative abilities and executive control functions predict novelty and appropriateness of idea generation. ''Commun Biol''. 2024 Jun 7; '''7''' (1):703
Predicting creative behavior using resting-state electroencephalography. Description: Chhade, Fatima, et al. Predicting creative behavior using resting-state electroencephalography. ''Commun Biol''. 2024 Jun 29; '''7''' (1):790
Brain age prediction and deviations from normative trajectories in the neonatal connectome. Description: Sun, Huili, et al. Brain age prediction and deviations from normative trajectories in the neonatal connectome. ''Nat Commun''. 2024 Nov 26; '''15''' (1):10251
A taxonomic guide to diffusion MRI tractography visualization tools. Description: Laamoumi, Miriam, et al. A taxonomic guide to diffusion MRI tractography visualization tools. ''NMR Biomed''. 2025 Jan; '''38''' (1):e5267