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help > Realign and Unwarp Issue
Dec 26, 2018 08:12 PM | Harrison Fisher - Martinos Center
Realign and Unwarp Issue
Hi Alfonso,
I am running into an issue with 3 subjects (88 others process without error), where the realign & unwarp preprocessing fails at the spm_uw_apply.m step.
The BOLD files for the problematic subjects do not differ from other subjects when looking at orientation, # volumes, dimensions, etc with programs like 3dinfo. Please let me know if anyone has any advice.
Best,
- Harris
SPM12: spm_uw_estimate (v6824) 14:58:45 - 26/12/2018
========================================================================
Completed : 14:59:50 - 26/12/2018
SPM12: spm_uw_apply (v6301) 14:59:50 - 26/12/2018
========================================================================
Computing mask... : Failed 'Realign & Unwarp'
Matrix dimensions must agree.
In file "/autofs/space/rainier_001/users/harris/spm12/spm_uw_apply.m" (v6301), function "spm_uw_apply" at line 229.
In file "/autofs/space/rainier_001/users/harris/spm12/config/spm_run_realignunwarp.m" (v6554), function "spm_run_realignunwarp" at line 98.
The following modules did not run:
Failed: Realign & Unwarp
Failed: Realign & Unwarp
Failed: Realign & Unwarp
I am running into an issue with 3 subjects (88 others process without error), where the realign & unwarp preprocessing fails at the spm_uw_apply.m step.
The BOLD files for the problematic subjects do not differ from other subjects when looking at orientation, # volumes, dimensions, etc with programs like 3dinfo. Please let me know if anyone has any advice.
Best,
- Harris
SPM12: spm_uw_estimate (v6824) 14:58:45 - 26/12/2018
========================================================================
Completed : 14:59:50 - 26/12/2018
SPM12: spm_uw_apply (v6301) 14:59:50 - 26/12/2018
========================================================================
Computing mask... : Failed 'Realign & Unwarp'
Matrix dimensions must agree.
In file "/autofs/space/rainier_001/users/harris/spm12/spm_uw_apply.m" (v6301), function "spm_uw_apply" at line 229.
In file "/autofs/space/rainier_001/users/harris/spm12/config/spm_run_realignunwarp.m" (v6554), function "spm_run_realignunwarp" at line 98.
The following modules did not run:
Failed: Realign & Unwarp
Failed: Realign & Unwarp
Failed: Realign & Unwarp
Threaded View
Title | Author | Date |
---|---|---|
Harrison Fisher | Dec 26, 2018 | |
Bruno Sonzogo | Jan 9, 2019 | |