Hi Hans,

I had worked a bit on this too. Here is the Matlab code that I used to extract the ROI matrix:

sub1_roi = load('resultsROI_Subject001_Condition003.mat');
csvwrite('sub1_roi.csv',sub1_roi.Z);

I've bolded the pieces that should be consistent across the CONN output files. You can find the 'resultsROI_Subject001_Condition003.mat' file in the '[CONN_project]/results/firstlevel/' folder.

If this is not correct, please let me know. Wouldn't want to lead you astray!

Allie