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help > conn_batch pipeline
Apr 9, 2020 07:04 PM | Sahil Bajaj
conn_batch pipeline
Dear Alfonso,
I am trying to perform preprocessing on my task fMRI data. I created a batch file (attached here for two sample subjects).
I have the latest version of CONN and SPM - with MATLAB v 2019a on MAC 10.15.4
After I run conn_batch(BATCH) on attached BATCH, I get the following errors (highlighted in red):
-----------------------------------------------------------------------------------------------------
This option is no longer supported and may become obsolete in future releases. Please transition your BATCH.New scripts to use BATCH.Setup.preprocessing instead
Warning: this preprocessing pipeline will be discontinued in future releases. See help conn_batch for new syntax
********************************
Preparing subject 1
********************************
********************************
Preparing subject 2
********************************
********************************
Preprocessing subject 1
********************************
Conversion Segment -> Old Segment
Item tools: No field(s) named
oldseg
Conversion Normalise:Write -> Old Normalise:Write
Item tools: No field(s) named
oldnorm
Conversion Normalise:EstWrite -> Old Normalise:EstWrite
Item tools: No field(s) named
oldnorm
Error using spm_jobman>fill_run_job (line 472)
No executable modules, but still unresolved dependencies or incomplete module inputs.
Error in spm_jobman (line 247)
sts = fill_run_job('run', cjob, varargin{3:end});
Error in conn_setup_wizard (line 345)
spm_jobman('run',matlabbatch);
Error in conn_batch (line 670)
conn_setup_wizard(OPTIONS);
-----------------------------------------------------------------------------------------------------
I would really appreciate your help in resolving this issue.
Thanks,
Sahil
I am trying to perform preprocessing on my task fMRI data. I created a batch file (attached here for two sample subjects).
I have the latest version of CONN and SPM - with MATLAB v 2019a on MAC 10.15.4
After I run conn_batch(BATCH) on attached BATCH, I get the following errors (highlighted in red):
-----------------------------------------------------------------------------------------------------
This option is no longer supported and may become obsolete in future releases. Please transition your BATCH.New scripts to use BATCH.Setup.preprocessing instead
Warning: this preprocessing pipeline will be discontinued in future releases. See help conn_batch for new syntax
********************************
Preparing subject 1
********************************
********************************
Preparing subject 2
********************************
********************************
Preprocessing subject 1
********************************
Conversion Segment -> Old Segment
Item tools: No field(s) named
oldseg
Conversion Normalise:Write -> Old Normalise:Write
Item tools: No field(s) named
oldnorm
Conversion Normalise:EstWrite -> Old Normalise:EstWrite
Item tools: No field(s) named
oldnorm
Error using spm_jobman>fill_run_job (line 472)
No executable modules, but still unresolved dependencies or incomplete module inputs.
Error in spm_jobman (line 247)
sts = fill_run_job('run', cjob, varargin{3:end});
Error in conn_setup_wizard (line 345)
spm_jobman('run',matlabbatch);
Error in conn_batch (line 670)
conn_setup_wizard(OPTIONS);
-----------------------------------------------------------------------------------------------------
I would really appreciate your help in resolving this issue.
Thanks,
Sahil
Threaded View
Title | Author | Date |
---|---|---|
Sahil Bajaj | Apr 9, 2020 | |
Alfonso Nieto-Castanon | Apr 10, 2020 | |