help > RE: first-level covariate QC_timeseries mismatched dimensions (0 rows) CONN version 19.b
Apr 15, 2020  01:04 PM | doora - ELTE
RE: first-level covariate QC_timeseries mismatched dimensions (0 rows) CONN version 19.b
Downgrading to conn 18b solved the problem, so I guess it only affets the new release.
Originally posted by doora:
Hi!

I am trying to utilize ART based outlier identification for scrubbing (I did manage to do this in a previous conn version long ago), but I run into the following error:

both the QC_timeseries and the scubbing covariates end up empty with dimensions of 0*0

even though it seems to run looking at the log history, I even have one art_screenshot.jpg file, although I run it with two subjects two sessions each and it seems to overwrtie the same jpg file...
What should I try to fix this?

Thanks in advance!
Dora

from the log history:
"Preparing functional Outlier detection (ART-based identification of outlier scans for scrubbing). Please wait...
Performing functional Outlier detection (ART-based identification of outlier scans for scrubbing). Please wait...

Mapping files for session 1...: ...done
Calculating globals...: 137/137...done
Mapping files for session 2...: ...done
Calculating globals...: 137/137...done
Session 1 global statistics - mean: 48.2440 stdv: 0.1823
Session 2 global statistics - mean: 54.9440 stdv: 0.3797
Outlier detection: 0 identified outliers
Statistics of movement data:
x y z pitch roll yaw norm
mean 0.0128 0.0355 0.0211 0.0005 0.0005 0.0006 0.1253
stdv 0.0425 0.0372 0.0215 0.0005 0.0006 0.0009 0.1283
max 0.6539 0.4544 0.1572 0.0039 0.0059 0.0130 1.6632
Saving SPM regressor file D:\Dori\fMRI data\rs_fmri\conn_batch\sub-01\func\art_regression_outliers_sub-01_func_sub-01_dog-rest_bold_run-01.mat and D:\Dori\fMRI data\rs_fmri\conn_batch\sub-01\func\art_regression_outliers_and_movement_sub-01_func_sub-01_dog-rest_bold_run-01.mat
Saving SPM regressor file D:\Dori\fMRI data\rs_fmri\conn_batch\sub-02\func\art_regression_outliers_sub-02_func_sub-02_dog-rest_bold_run-01.mat and D:\Dori\fMRI data\rs_fmri\conn_batch\sub-02\func\art_regression_outliers_and_movement_sub-02_func_sub-02_dog-rest_bold_run-01.mat
New analysis mask file saved to D:\Dori\fMRI data\rs_fmri\conn_batch\sub-01\func\art_mask_sub-01_func_sub-01_dog-rest_bold_run-01.nii
New Voxel-wise mean file saved to D:\Dori\fMRI data\rs_fmri\conn_batch\sub-01\func\art_mean_sub-01_func_sub-01_dog-rest_bold_run-01.nii
Saved file: D:\Dori\fMRI data\rs_fmri\conn_batch\sub-01\func\art_screenshot.jpg
Mapping files for session 1...: ...done
Calculating globals...: 137/137...done
Mapping files for session 2...: ...done
Calculating globals...: 137/137...done
Session 1 global statistics - mean: 52.7896 stdv: 0.3017
Session 2 global statistics - mean: 56.9938 stdv: 0.5493
Outlier detection: 3 identified outliers
Statistics of movement data:
x y z pitch roll yaw norm
mean 0.0092 0.0238 0.0157 0.0006 0.0005 0.0004 0.1049
stdv 0.0119 0.0418 0.0460 0.0013 0.0022 0.0013 0.2449
max 0.1684 0.5795 0.6253 0.0192 0.0328 0.0196 3.4787
Saving SPM regressor file D:\Dori\fMRI data\rs_fmri\conn_batch\sub-01\func\art_regression_outliers_sub-01_func_sub-01_dog-rest_bold_run-02.mat and D:\Dori\fMRI data\rs_fmri\conn_batch\sub-01\func\art_regression_outliers_and_movement_sub-01_func_sub-01_dog-rest_bold_run-02.mat
Saving SPM regressor file D:\Dori\fMRI data\rs_fmri\conn_batch\sub-02\func\art_regression_outliers_sub-02_func_sub-02_dog-rest_bold_run-02.mat and D:\Dori\fMRI data\rs_fmri\conn_batch\sub-02\func\art_regression_outliers_and_movement_sub-02_func_sub-02_dog-rest_bold_run-02.mat
New analysis mask file saved to D:\Dori\fMRI data\rs_fmri\conn_batch\sub-01\func\art_mask_sub-01_func_sub-01_dog-rest_bold_run-02.nii
New Voxel-wise mean file saved to D:\Dori\fMRI data\rs_fmri\conn_batch\sub-01\func\art_mean_sub-01_func_sub-01_dog-rest_bold_run-02.nii
Saved file: D:\Dori\fMRI data\rs_fmri\conn_batch\sub-01\func\art_screenshot.jpg
Done functional Outlier detection (ART-based identification of outlier scans for scrubbing)

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TitleAuthorDate
doora Apr 12, 2020
RE: first-level covariate QC_timeseries mismatched dimensions (0 rows) CONN version 19.b
doora Apr 15, 2020
Alfonso Nieto-Castanon Apr 16, 2020
doora Apr 16, 2020