Thank you, Juan.

I registered my brainmask to my T1 and utilized the UNC adult atlas as my tissue segmentation directory. Everything ran smoothly until this error:


"Failed opening /home/bic/Desktop/UNC_atlas_trial/ABC_Segmentation/T1_to_template_EMS.affine

terminate called after throwing an instance of 'itk::ImageFileReaderException'
what(): /work/jprieto/source/auto_EACSF-build/ITKv4-install/include/ITK-4.13/itkImageFileReader.hxx:143:
Could not create IO object for reading file /home/bic/Desktop/UNC_atlas_trial/FinalMasking/Partial_conComp_dil.nrrd
The file doesn't exist...."

attached is the error log. any help is greatly appreciated!

Thanks!
Alex