help > RE: Tissue Segmentation Input/Tissue Segmentation Atlas directory
Jun 23, 2020  02:06 PM | Alex Brown
RE: Tissue Segmentation Input/Tissue Segmentation Atlas directory
Hi Juan,

After running the 1.7.6 version I got the same output files and same errors as in my previous post. However, in the ABCparam.xml the image used was the T1_stripped.nrrd instead of the original T1.nii.

Attached is the tissue_seg py script. It seems the T1_stripped_to_template_EMS.affine file isn't being generated.
Let me know If you need any additonal scripts/logs.

Thanks,
Alex
Attachment: tissue_seg.py
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Alex Brown Jun 18, 2020
Juan Prieto Jun 23, 2020
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Juan Prieto Jun 22, 2020
RE: Tissue Segmentation Input/Tissue Segmentation Atlas directory
 Alex Brown Jun 23, 2020
Alex Brown Jun 23, 2020
Alex Brown Jun 23, 2020
Juan Prieto Jun 23, 2020
Juan Prieto Jun 23, 2020
Alex Brown Jun 25, 2020
Chieh-En Tseng Dec 28, 2020
Juan Prieto Dec 29, 2020
Chieh-En Tseng Dec 29, 2020
Juan Prieto Dec 29, 2020
Chieh-En Tseng Dec 29, 2020
Chieh-En Tseng Dec 28, 2020
Juan Prieto Jun 29, 2020
Juan Prieto Jul 6, 2020