Hi Alfonso,

I am working with multisite data and was wondering what would be the best option when to include the scanner site harmonisation step (using the neuroHarmonize tools)? It is usually recommended to harmonise the first level files, but this will not include correlation matrices.

What file(s) would you recommend to be harmonised that will allow any type of subsequent analysis (ROI to ROI, seed based, etc)?

Thanks in advance,

Yann