extending_nifti
extending_nifti > RE: Extending NIFTI Discussion
Feb 28, 2011 04:02 PM | Satrajit Ghosh
RE: Extending NIFTI Discussion
thank you for opening this discussion. along with larger image
sizes and aggregation of data across increasingly large studies,
there is a need for:
a. serializable compression and the ability to operate on a single voxel/plane time-series or a single volume of a 4D-volume.
b. extended sequence meta-data derived from different pulse-sequences (for example, multiple echo-times and flip angles for flash scans) that are useful for reconstruction algorithms
c. an extensible schema for neuroimaging data formats that's consistent across conversion from manufacturers own dicom fields
one option that addresses (a,b) is HDF5 (http://www.hdfgroup.org/HDF5/). the MINC2 (link) format uses HDF5 and is a good option to look into as a starting point.
for c, the XCEDE and XNAT schemas are steps in that direction, but we haven't had much buy-in from the community at large. however, with increasing public distribution of large scale studies, it's worthwhile to start considering/extending some of these options seriously.
a. serializable compression and the ability to operate on a single voxel/plane time-series or a single volume of a 4D-volume.
b. extended sequence meta-data derived from different pulse-sequences (for example, multiple echo-times and flip angles for flash scans) that are useful for reconstruction algorithms
c. an extensible schema for neuroimaging data formats that's consistent across conversion from manufacturers own dicom fields
one option that addresses (a,b) is HDF5 (http://www.hdfgroup.org/HDF5/). the MINC2 (link) format uses HDF5 and is a good option to look into as a starting point.
for c, the XCEDE and XNAT schemas are steps in that direction, but we haven't had much buy-in from the community at large. however, with increasing public distribution of large scale studies, it's worthwhile to start considering/extending some of these options seriously.
Threaded View
Title | Author | Date |
---|---|---|
Mark Jenkinson | Feb 28, 2011 | |
Jon Clayden | Feb 11, 2013 | |
Cinly Ooi | Mar 24, 2011 | |
Andrew Janke | Mar 25, 2011 | |
Jon Clayden | Mar 5, 2011 | |
Satrajit Ghosh | Mar 5, 2011 | |
Satrajit Ghosh | Feb 28, 2011 | |
Andrew Janke | Mar 1, 2011 | |
Stephen Strother | Mar 5, 2011 | |
Gael Varoquaux | Feb 28, 2011 | |