extending_nifti > RE: Extending NIFTI Discussion
Feb 28, 2011  04:02 PM | Satrajit Ghosh
RE: Extending NIFTI Discussion
thank you for opening this discussion. along with larger image sizes and aggregation of data across increasingly large studies, there is a need for:

a. serializable compression and the ability to operate on a single voxel/plane time-series or a single volume of a 4D-volume.
b. extended sequence meta-data derived from different pulse-sequences (for example, multiple echo-times and flip angles for flash scans) that are useful for reconstruction algorithms
c. an extensible schema for neuroimaging data formats that's consistent across conversion from manufacturers own dicom fields

one option that addresses (a,b) is HDF5  (http://www.hdfgroup.org/HDF5/). the MINC2 (link) format uses HDF5 and is a good option to look into as a starting point.

for c, the XCEDE and XNAT schemas are steps in that direction, but we haven't had much buy-in from the community at large. however, with increasing public distribution of large scale studies, it's worthwhile to start considering/extending some of these options seriously.

Threaded View

TitleAuthorDate
Mark Jenkinson Feb 28, 2011
Jon Clayden Feb 11, 2013
Cinly Ooi Mar 24, 2011
Andrew Janke Mar 25, 2011
Jon Clayden Mar 5, 2011
Satrajit Ghosh Mar 5, 2011
RE: Extending NIFTI Discussion
Satrajit Ghosh Feb 28, 2011
Andrew Janke Mar 1, 2011
Stephen Strother Mar 5, 2011
Gael Varoquaux Feb 28, 2011