help
help > RE: Run CONN script on the server with java error
May 9, 2022 10:05 PM | Alfonso Nieto-Castanon - Boston University
RE: Run CONN script on the server with java error
Hi Judy,
Sorry about that, it seems the script is trying to launch a GUI window to ask you to enter the labels for your functional datasets (but that should not be possible whether your server has jvm enabled or not, assuming that your server is just a terminal without graphics). Could you please share your script to see if that gives me a hint as to why that may be happening only when starting without a java virtual machine?
Thanks
Alfonso
Originally posted by nshih:
Sorry about that, it seems the script is trying to launch a GUI window to ask you to enter the labels for your functional datasets (but that should not be possible whether your server has jvm enabled or not, assuming that your server is just a terminal without graphics). Could you please share your script to see if that gives me a hint as to why that may be happening only when starting without a java virtual machine?
Thanks
Alfonso
Originally posted by nshih:
Hi CONN expert,
When I run my CONN script for resting state analysis on server with java, it works totally well. However, when I'm try to run this same script on the server without using no java, I always get error which complaining these line (below) in preprocessing step (I used 'default_mni'). I'm not sure which steps in this 'default_mni' pipeline will using java, and are these steps necessary for resting state analysis? I wonder if java is required for running precessing pipeline on CONN? Or there is the way to figure out this issue?
these are the error I got:
------------------------------------------
Error using warnfiguredialog (line 12)
This functionality is no longer supported under the -nojvm startup option. For
more information, see "Changes to -nojvm Startup Option" in the MATLAB Release
Notes. To view the release note in your system browser, run
web('http://www.mathworks.com/help/matlab/release-notes.html#btsurqv-6',
'-browser').
Error in dialog (line 39)
warnfiguredialog('dialog');
Error in inputdlg (line 141)
InputFig=dialog( ...
Error in conn_setup_preproc (line 817)
label=inputdlg('Enter functional label (arbitrary
description)','conn_setup_preproc',1,label);
Error in conn_process (line 27)
case 'setup_preprocessing', conn_disp(['CONN: RUNNING
SETUP.PREPROCESSING STEP']); conn_setup_preproc(varargin{:});
Error in conn_batch (line 1236)
conn_process('setup_preprocessing',steps,'subjects',SUBJECTS,OPTIONS{:});
------------------------------------------
Thanks for your help!
Thanks,
Judy
When I run my CONN script for resting state analysis on server with java, it works totally well. However, when I'm try to run this same script on the server without using no java, I always get error which complaining these line (below) in preprocessing step (I used 'default_mni'). I'm not sure which steps in this 'default_mni' pipeline will using java, and are these steps necessary for resting state analysis? I wonder if java is required for running precessing pipeline on CONN? Or there is the way to figure out this issue?
these are the error I got:
------------------------------------------
Error using warnfiguredialog (line 12)
This functionality is no longer supported under the -nojvm startup option. For
more information, see "Changes to -nojvm Startup Option" in the MATLAB Release
Notes. To view the release note in your system browser, run
web('http://www.mathworks.com/help/matlab/release-notes.html#btsurqv-6',
'-browser').
Error in dialog (line 39)
warnfiguredialog('dialog');
Error in inputdlg (line 141)
InputFig=dialog( ...
Error in conn_setup_preproc (line 817)
label=inputdlg('Enter functional label (arbitrary
description)','conn_setup_preproc',1,label);
Error in conn_process (line 27)
case 'setup_preprocessing', conn_disp(['CONN: RUNNING
SETUP.PREPROCESSING STEP']); conn_setup_preproc(varargin{:});
Error in conn_batch (line 1236)
conn_process('setup_preprocessing',steps,'subjects',SUBJECTS,OPTIONS{:});
------------------------------------------
Thanks for your help!
Thanks,
Judy
Threaded View
Title | Author | Date |
---|---|---|
nshih | May 6, 2022 | |
Alfonso Nieto-Castanon | May 9, 2022 | |
nshih | May 11, 2022 | |
Alfonso Nieto-Castanon | May 11, 2022 | |
nshih | May 18, 2022 | |