Hi Conn Experts,

   I'm hoping that I'm overlooking something simple. I have performed preprocessing using both the indirect and direct methods, both with unwarping and get the same result: namely that my structural volume / MNI registration looks good (Structurals-> structural tools -> display anatomical/MNI registration), my functional/MNI registration looks good (Functionals-> functional tools -> display functional/MNI registration), my structural / functional registration looks fine, but when I compare my functional volumes to the WM/GM/MNI atlas from my QA plots or the ROI tools menu, they are offset (attached figure). The preceding sentence is true for all subjects - the functionals are offset from the atlas for all datasets. This doesn't make sense to me logically, so I'm either missing something or mis-interpreting one of these overlay plots.  I've seen this question asked before, but the responses were either here's what to check - which led to the attached plot - or "I fixed it", but with no indication as to what the issue was. Any ideas?