Hi,
I have downloaded CMTK-3.3.2-Source.tar.gz and I am trying to build it from source. Our HPC cluster is Red Hat Enterprise Linux 8.7 (Ootpa).
My cmake version is 3.25.6, my gcc version is 11.2.0.7, my fftw version is 3.3.10.8. I used the following cmake command:
cmake -C ../core/config/gcc-x86_64-sse.cmake -DCMAKE_INSTALL_PREFIX=/projects/kfotso@xsede.org/nitrc/nitrc_install -DDCMTK_config_INCLUDE_DIR=/projects/kfotso@xsede.org/nitrc/dcmtk-install/include/dcmtk/config/ -DDCMTK_ofstd_INCLUDE_DIR=/projects/kfotso@xsede.org/nitrc/dcmtk-install/include/dcmtk/ofstd -DDCMTK_dcmdata_INCLUDE_DIR=/projects/kfotso@xsede.org/nitrc/dcmtk-install/include/dcmtk/dcmdata -DDCMTK_dcmimgle_INCLUDE_DIR=/projects/kfotso@xsede.org/nitrc/dcmtk-install/include/dcmtk/dcmimgle -DDCMTK_ofstd_LIBRARY=/projects/kfotso@xsede.org/nitrc/dcmtk-install/lib -DDCMTK_dcmdata_LIBRARY=/projects/kfotso@xsede.org/nitrc/dcmtk-install/lib -DDCMTK_dcmimgle_LIBRARY=/projects/kfotso@xsede.org/nitrc/dcmtk-install/lib -DDCMTK_DCMDICTPATH=/projects/kfotso@xsede.org/nitrc/dcmtk-install/share/dcmtk/dicom.dic -DMXML_INCLUDE_DIR=/projects/kfotso@xsede.org/nitrc/mxml_install/include -DMXML_LIBRARY=/projects/kfotso@xsede.org/nitrc/mxml_install/lib -DFFTW_DIR=/curc/sw/install/fftw/3.3.10/gcc/11.2.0 -DFFTW_INCLUDE_PATH=/curc/sw/install/fftw/3.3.10/gcc/11.2.0/include -DFFTWD_THREADS_LIB=/curc/sw/install/fftw/3.3.10/gcc/11.2.0/lib/libfftw3_threads.so.3 -DFFTWD_OMP_LIB=/curc/sw/install/fftw/3.3.10/gcc/11.2.0/lib/libfftw3_omp.so.3 ../core
When running make, I got the following error:
/curc/sw/install/gcc/11.2.0/include/c++/11.2.0/bits/unique_ptr.h:57:28:
note: declared here
57 | template<typename> class
auto_ptr;
|
^~~~~~~~
/projects/kfotso@xsede.org/nitrc/core/libs/IO/cmtkImageFileDICOM.cxx:169:29:
warning: ‘template<class> class std::auto_ptr’ is deprecated:
use 'std::unique_ptr' instead [-Wdeprecated-declarations]
169 | this->m_Document =
std::auto_ptr<DiDocument>(new
DiDocument(this->m_Dataset.get(),
this->m_Dataset->getOriginalXfer(),
CIF_AcrNemaCompatibility));
|
^~~~~~~~
In file included from
/curc/sw/install/gcc/11.2.0/include/c++/11.2.0/bits/locale_conv.h:41,
from
/curc/sw/install/gcc/11.2.0/include/c++/11.2.0/locale:43,
from
/curc/sw/install/gcc/11.2.0/include/c++/11.2.0/iomanip:43,
from
/projects/kfotso@xsede.org/nitrc/dcmtk-install/include/dcmtk/ofstd/ofstream.h:33,
from
/projects/kfotso@xsede.org/nitrc/dcmtk-install/include/dcmtk/ofstd/oftypes.h:90,
from
/projects/kfotso@xsede.org/nitrc/dcmtk-install/include/dcmtk/ofstd/ofvector.h:46,
from
/projects/kfotso@xsede.org/nitrc/dcmtk-install/include/dcmtk/oflog/loglevel.h:35,
from
/projects/kfotso@xsede.org/nitrc/dcmtk-install/include/dcmtk/oflog/logger.h:34,
from
/projects/kfotso@xsede.org/nitrc/dcmtk-install/include/dcmtk/oflog/oflog.h:28,
from
/projects/kfotso@xsede.org/nitrc/dcmtk-install/include/dcmtk/dcmdata/dctypes.h:27,
from
/projects/kfotso@xsede.org/nitrc/dcmtk-install/include/dcmtk/dcmdata/dctk.h:28,
from
/projects/kfotso@xsede.org/nitrc/core/libs/IO/cmtkImageFileDICOM.h:43,
from
/projects/kfotso@xsede.org/nitrc/core/libs/IO/cmtkImageFileDICOM.cxx:33:
/curc/sw/install/gcc/11.2.0/include/c++/11.2.0/bits/unique_ptr.h:57:28:
note: declared here
57 | template<typename> class
auto_ptr;
|
^~~~~~~~
/projects/kfotso@xsede.org/nitrc/core/libs/IO/cmtkImageFileDICOM.cxx:
In member function ‘void cmtk::ImageFileDICOM::DoFOV()’:
/projects/kfotso@xsede.org/nitrc/core/libs/IO/cmtkImageFileDICOM.cxx:252:55:
error: invalid conversion from ‘DcmObject*’ to ‘DcmItem*’
[-fpermissive]
252 | if
(this->m_Document->getValue(tagKey, pTmpInt, pObj) > 0)
{
|
^~~~
|
|
|
DcmObject*
In file included from
/projects/kfotso@xsede.org/nitrc/core/libs/IO/cmtkImageFileDICOM.h:44,
from
/projects/kfotso@xsede.org/nitrc/core/libs/IO/cmtkImageFileDICOM.cxx:33:
/projects/kfotso@xsede.org/nitrc/dcmtk-install/include/dcmtk/dcmimgle/didocu.h:295:37:
note: initializing argument 3 of ‘long unsigned int
DiDocument::getValue(const DcmTagKey&, const Uint16*&,
DcmItem*) cons
t’
295 |
DcmItem *item =
NULL) const;
|
^
/projects/kfotso@xsede.org/nitrc/core/libs/IO/cmtkImageFileDICOM.cxx:
In member function ‘void
cmtk::ImageFileDICOM::DoAcquisitionMatrix()’:
/projects/kfotso@xsede.org/nitrc/core/libs/IO/cmtkImageFileDICOM.cxx:281:74:
error: invalid conversion from ‘DcmObject*’ to ‘DcmItem*’
[-fpermissive]
281 | if
(this->m_Document->getValue(DCM_AcquisitionMatrix, tmpDbl,
dim, pObj) > 0)
|
^~~~
|
|
|
DcmObject*
In file included from
/projects/kfotso@xsede.org/nitrc/core/libs/IO/cmtkImageFileDICOM.h:44,
from
/projects/kfotso@xsede.org/nitrc/core/libs/IO/cmtkImageFileDICOM.cxx:33:
/projects/kfotso@xsede.org/nitrc/dcmtk-install/include/dcmtk/dcmimgle/didocu.h:226:37:
note: initializing argument 4 of ‘long unsigned int
DiDocument::getValue(const DcmTagKey&, Uint16&, long
unsigned int, Dc
mItem*, OFBool) const’
226 |
DcmItem *item =
NULL,
|
^
make[2]: *** [libs/IO/CMakeFiles/cmtkIO.dir/build.make:202:
libs/IO/CMakeFiles/cmtkIO.dir/cmtkImageFileDICOM.cxx.o] Error 1
make[1]: *** [CMakeFiles/Makefile2:4366:
libs/IO/CMakeFiles/cmtkIO.dir/all] Error 2
make: *** [Makefile:166: all] Error 2
Do you have any suggestion?
Sincerely
Threaded View
Title | Author | Date |
---|---|---|
ktagen-sudo | Jun 15, 2023 | |
ktagen-sudo | Jun 15, 2023 | |