help > RE: AP-PA field map correction
Aug 13, 2024  05:08 PM | Hyeonmin An
RE: AP-PA field map correction

Hello, Alfonso, 


Thank you so much for your response. I created the `.json` file with the required lines, but I’m still receiving a message stating that there is no unit of Hz.


I used `fslmerge` and `topup` to prepare the images, but it doesn’t seem to be correcting the distortions. Am I correct in understanding that I should use the `topup` command with the raw field map images? I merged the two AP and PA field map images using `fslmerge` and then applied `topup` to the result.


I’ve attached the images after running `topup`. Are these the correct images to use for fieldmap correction?


Thank you for your guidance.


Best,


Hyeonmin

Threaded View

TitleAuthorDate
Hyeonmin An Aug 5, 2024
RE: AP-PA field map correction
Hyeonmin An Aug 13, 2024
Alfonso Nieto-Castanon Aug 6, 2024