Hello everyone,
I've been using VisuAlign as part of the QUINT workflow to adjust
slices registered to the Waxholm Space Atlas (using QuickNII 2.2.
with v4 of the Waxholm Atlas).
This has been working but I've come
across two issues now
1. for generation of hemibrain maps using QuickMaskNL, the
reference coordinates supplied on the Nutil documentation (https://nutil.readthedocs.io/en/latest/Q...)
appear to be for a mouse brain or at least not for v4 of the WHS
atlas.
I've managed to generate roughly fitting maps through trial and
error (coordinate string: 242 32.2 292.8 242 367.9 291.8 242 34.5
48.7) but I'd be grateful if anyone could explain what the
coordinates actually signify and how they were determined in the
first place so I might be able to replicate this for the WHS
atlas
2. I have a large number of brains (> 100) that I've registered
and now need to generate the hemibrain maps for. Is there any way
to automate QuickMaskNL for this? Manually entering all the info
for the location of the json files, etc. is cumbersom work I'd like
to avoid if at all possible
Threaded View
Title | Author | Date |
---|---|---|
Janine Reinert | Jan 21, 2025 | |
Gergely Csucs | Jan 22, 2025 | |
Janine Reinert | Jan 28, 2025 | |