Hi Jaakko,

Yes, you may use conn_module functionality to do this easily/quickly. First, remember to close any CONN project that you may have in the GUI (as conn_module functionality may interfere with any open CONN project). Then, you may use syntax like:

file_ImageInMNI = 'testImage.nii'; 

file_InverseCentering = 'icentering_meanuREST.mat';

file_InverseNormalization = 'iy_art_mean_auREST.nii'; 

conn_module('PREP', ...

   'functionals', file_ImageInMNI, ...

   'steps', {'functional_manualspatialdef','functional_manualorient'}, ...

   'respatialdef', file_InverseNormalization, ...

   'reorient', file_InverseCentering);

That will create a new file, named 'wtestImage.nii' in the example above, with the original image back in subject-space (in the same space as the functional data before normalization). 

Hope this helps

Alfonso

Originally posted by Jaakko Hotta:

Hi, 

I have preprocessed and analyzed my data with CONN. Now I wish to reverse some results from normalized MNI space to native space. To my understanding I first have to do

1. inverse normalization and then
   
2. inverse centering
   

I can do the inverse normalization in SPM Normalize (Write) tool applying iy_*.nii matrix, but what about the inverse centering? I found the icentering_***.mat file has the needed translations for x, y and z that I can apply manually in SPM Display tool, but I quess there should be a more automated way also? 

Do you have any suggestions how to perform this to avoid error prone manual work :)

Best regards Jaakko Hotta