Hello
 
When I attempt to run brain extraction through BioImageSuite on
Windows XP I get the error below. I have followed the manual
installation instructions, added BET to the path, and saved the image
I am working on within BioImageSuite. Can you advise how to address
this?
 
Thank you
 
David Alexander Dickie
Brain Research Imaging Centre, Edinburgh
 

can't read "fname": no such variable
can't read "fname": no such variable
   while executing
"pxtclutil::Warning "The current image has not been saved\n as $fname
does not exist!\n Canceling $operation!" "
   (object "::pxitclbaseimageviewer::pxitclbrainstrip0" method
"::pxitclbrainstrip::EnsureCurrentImageIsSaved" body line 15)
   invoked from within
"$this EnsureCurrentImageIsSaved "Brain Segmentation" "
   (object "::pxitclbaseimageviewer::pxitclbrainstrip0" method
"::pxitclbrainstrip::RunBET" body line 3)
   invoked from within
"::pxitclbaseimageviewer::pxitclbrainstrip0 RunBET 1 "
   invoked from within
".pxtclobj11.viewer1.pxitclbrainstrip0.notebook.canvas.notebook.cs.page4.cs.bar2.h.1
invoke"
   ("uplevel" body line 1)
   invoked from within
"uplevel #0 [list $w invoke]"
   (procedure "tk::ButtonUp" line 24)
   invoked from within
"tk::ButtonUp .pxtclobj11.viewer1.pxitclbrainstrip0.notebook.canvas.notebook.cs.page4.cs.bar2.h.1"
   (command bound to event)