[Brains-users] folder structure and permissions

[Eugene Zeien]

Our folder structure looks like this,
single_MR_folder\10_ACPC\$user
single_MR_folder\T1_folder
single_MR_folder\T1_folder\$user
single_MR_folder\T2_folder
single_MR_folder\PDT2_folder

(We don't use the word folder though, usually series #)
The contents of the T1, T2, and PDT2 folders are the images from that MR 
series.
single_MR_folder = unique identifier for that MR session, is treated 
internally as a string.
$user = folder where this tracer's ROIs and data will be stored.
The user should have write permission on each layer in this structure, 
except other user's
roi folders.  The images should also be tagged as read only.

Some of the automated features in our "Standard Workup" section will try 
to guess which
folder contains the T1, T2, or PDT2 image set.  When the GUI pops up 
with the fields for
specifying where these are, it will contain a single "." if the program 
failed to find a match.
Many such functions will fail if you attempt to run them without filling 
in the field.

If this information is insufficient, please reply with a verbatim copy 
of the brains2 error,
and the full output from brains2.

gene

Christoph Christmann wrote:

> hi,
>
> we recently installed the cygwin version of brains2. while working 
> with the program we got error messages referring to non-existing 
> folders (like 10_ACPC or so). We created the missing folders manually 
> but it want work either. Is there a simple way to create a folder 
> structure that would work correctly with brains2?
>
> TIA
>
> christoph
>
>