MeshView for brain atlases
MeshView (please visit MediaWiki page for links) is a web application for real-time 3D display of surface mesh data representing structural parcellations from volumetric atlases, such as the Waxholm Space Atlas of the Sprague Dawley Rat Brain.
Key features:
- orbiting view with toggleable opaque/transparent/hidden parcellation meshes
- rendering user defined cut surface as if meshes were solid objects
- rendering point-clouds (simple type-in, or loaded from JSON)
- coordinate system is compatible with QuickNII (https://www.nitrc.org/projects/quicknii)
Two atlases are provided with MeshView:
- Waxholm Space Atlas of the Sprague Dawley rat brain, parcellation versions 2, 3, and 4 (generated from 39 μm resolution volume)
- Allen Mouse Brain Atlas reference atlas, CCFv3 parcellations from 2015, and 2017 (generated from 25 μm resolution volume)
A converter will be provided for importing STL meshes, like the ones generated by MeshGen.
Key features:
- orbiting view with toggleable opaque/transparent/hidden parcellation meshes
- rendering user defined cut surface as if meshes were solid objects
- rendering point-clouds (simple type-in, or loaded from JSON)
- coordinate system is compatible with QuickNII (https://www.nitrc.org/projects/quicknii)
Two atlases are provided with MeshView:
- Waxholm Space Atlas of the Sprague Dawley rat brain, parcellation versions 2, 3, and 4 (generated from 39 μm resolution volume)
- Allen Mouse Brain Atlas reference atlas, CCFv3 parcellations from 2015, and 2017 (generated from 25 μm resolution volume)
A converter will be provided for importing STL meshes, like the ones generated by MeshGen.
Specifications
Associations
compatible with:
works well with:
Recent Activity - Documents
Recent Activity - Forums
How to view a point cloud in cross section posted by Byung Jun Yang on Dec 8, 2023
RE: Exporting MeshView posted by Gergely Csucs on May 1, 2023
Exporting MeshView posted by Izzy Ferenczi on Mar 23, 2023
RE: Welcome to General forum for MeshView posted by Gergely Csucs on Nov 9, 2021
RE: QUINT workflow visualization & Waxholm V3 support? posted by Anh Nguyen on Sep 10, 2021
QUINT workflow visualization & Waxholm V3 support? posted by dpalm010 on Sep 4, 2021
Welcome to General forum for MeshView posted by Gergely Csucs on Apr 11, 2019