Vaa3D and Vaa3D-Neuron
Vaa3D is very easy to be extended via a powerful plugin interface. For example, many ITK tools are being converted to Vaa3D Plugins.
Vaa3D-Neuron is built upon Vaa3D to make 3D neuron reconstruction much easier. In a recent Nature Biotechnology paper (2010, 28(4), pp.348-353) about Vaa3D and Vaa3D-Neuron, an order of magnitude of performance improvement (both reconstruction accuracy and speed) was achieved compared to other tools.
Execution Options
Associations
Recent Activity - Trackers
Neuron stitcher plugin crashes posted by marinka88 on Apr 12, 2021
Edit and save enhanced swc in 3D view window posted by Daniel Iascone on Sep 26, 2016
curve/line profiling tool crashed posted by Zhi Zhou on Feb 1, 2016
curve/line profiling tool crashed posted by Hanchuan Peng on Jan 28, 2016
call each other plugin demo not working for Linux posted by Hanchuan Peng on Nov 17, 2015
Side tool bar for neuron editing mode? posted by Hanbo Chen on Jun 24, 2015
display surface within volume cut posted by Hanbo Chen on Jun 17, 2015
program crash when using one right stroke to delete segment posted by Alessandro Bria on May 23, 2015
Markers do not stay in display "off" mode (windows) posted by Hanchuan Peng on May 23, 2015
Recent Activity - Forums
RE: Terafly look up table for visualization posted by Snehashis Roy on Oct 15
Terafly look up table for visualization posted by Snehashis Roy on Oct 15
RE: FlipY when loading stacked 2D .tif image posted by Hanchuan Peng on Aug 7
FlipY when loading stacked 2D .tif image posted by Jingyi Yao on Aug 7
RE: Changing color on 3D traces not working posted by Lingli Zhang on Nov 30, 2023
RE: convert tiff to v3draw via plugin in newest Vaa3d version posted by Lingli Zhang on Nov 30, 2023
swc_registration.exe crashes silently for larger reconstructions posted by bea collibee on Oct 19, 2023
Changing color on 3D traces not working posted by muhibmethani on Sep 19, 2023
convert tiff to v3draw via plugin in newest Vaa3d version posted by bea collibee on Jul 27, 2023
Recent Activity - News
Vaa3D v3.2 (w TeraFly engine and 130+ plugins) is released posted by Hanchuan Peng on May 20, 2016
Vaa3D on GitHub Now! posted by Hanchuan Peng on Feb 2, 2016
Vaa3D v2.920 released! posted by Hanchuan Peng on Oct 21, 2014
New Vaa3D paper is published in Nature Protocols posted by Hanchuan Peng on Jan 6, 2014
Vaa3D version 2.865 is released posted by Hanchuan Peng on Dec 30, 2013
Vaa3D Helps win the Annual Andor Insight Best Image Award posted by Hanchuan Peng on Jul 2, 2013
Vaa3D-Neuron2 Released (April 19, 2013) posted by Hanchuan Peng on Apr 24, 2013
The All-Path-Pruning-2 paper is published in Bioinformatics posted by Hanchuan Peng on Apr 21, 2013
Vaa3D v2.801 Released posted by Hanchuan Peng on Sep 4, 2012
Vaa3D and Vaa3D-Neuron now documented on GoogleCode posted by Hanchuan Peng on Apr 18, 2012
Recent Activity - Files
Linux-Ubuntu posted by Hanchuan Peng on Jun 23, 2016
Linux-CentOS posted by Hanchuan Peng on Jun 23, 2016
Mac posted by Hanchuan Peng on Jun 23, 2016
Windows posted by Hanchuan Peng on Jun 23, 2016
Mac OS X 10.9+ posted by Xiaoxiao Liu on Mar 19, 2015
Mac OS X 10.7+ posted by Xiaoxiao Liu on Mar 19, 2015
Windows 64bit posted by Xiaoxiao Liu on Mar 19, 2015
V3D Plugin Examples & Interface v0.95 - Source Code posted by Hanchuan Peng on Jun 24, 2010
Linux Ubuntu (10.04 and above) 32bit posted by Hanchuan Peng on Jun 24, 2010
Linux Ubuntu (9.1 and above) 64bit posted by Hanchuan Peng on Jun 24, 2010
Documents: 2
PubMed Mentions: 129
Forums: 2573 messages in 2 forums
News Items: 20
Tracker: 0 open / 0 total
Total Downloads: 14981
Registered: Jun 4, 2010
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