PubMed Mentions

The links below are to publications on PubMed referring to BluePyOpt. This list is gathered weekly from PubMed automatically.

Publication/References
BluePyOpt: Leveraging Open Source Software and Cloud Infrastructure to Optimise Model Parameters in Neuroscience. Description: Van Geit, Werner, et al. BluePyOpt: Leveraging Open Source Software and Cloud Infrastructure to Optimise Model Parameters in Neuroscience. ''Front Neuroinform''. 2016; '''10''': 17
Structural and functional, empirical and modeled connectivity in the cerebral cortex of the rat. Description: Diaz-Parra, Antonio, et al. Structural and functional, empirical and modeled connectivity in the cerebral cortex of the rat. ''Neuroimage''. 2017 Oct 1; '''159''': 170-184
The physiological variability of channel density in hippocampal CA1 pyramidal cells and interneurons explored using a unified data-driven modeling workflow. Description: Migliore, Rosanna, et al. The physiological variability of channel density in hippocampal CA1 pyramidal cells and interneurons explored using a unified data-driven modeling workflow. ''PLoS Comput Biol''. 2018 Sep; '''14''' (9):e1006423
Experimentally-constrained biophysical models of tonic and burst firing modes in thalamocortical neurons. Description: Iavarone, Elisabetta, et al. Experimentally-constrained biophysical models of tonic and burst firing modes in thalamocortical neurons. ''PLoS Comput Biol''. 2019 May; '''15''' (5):e1006753
Dimensions of control for subthreshold oscillations and spontaneous firing in dopamine neurons. Description: Rumbell, Timothy, et al. Dimensions of control for subthreshold oscillations and spontaneous firing in dopamine neurons. ''PLoS Comput Biol''. 2019 Sep; '''15''' (9):e1007375
The microcircuits of striatum in silico. Description: Hjorth, J J Johannes, et al. The microcircuits of striatum in silico. ''Proc Natl Acad Sci U S A''. 2020 Apr 28; '''117''' (17):9554-9565
Training deep neural density estimators to identify mechanistic models of neural dynamics. Description: Goncalves, Pedro J, et al. Training deep neural density estimators to identify mechanistic models of neural dynamics. ''Elife''. 2020 Sep 17; '''9''':
Cerebellar Golgi cell models predict dendritic processing and mechanisms of synaptic plasticity. Description: Masoli, Stefano, et al. Cerebellar Golgi cell models predict dendritic processing and mechanisms of synaptic plasticity. ''PLoS Comput Biol''. 2020 Dec; '''16''' (12):e1007937
The EBRAINS NeuroFeatureExtract: An Online Resource for the Extraction of Neural Activity Features From Electrophysiological Data. Description: Bologna, Luca L, et al. The EBRAINS NeuroFeatureExtract: An Online Resource for the Extraction of Neural Activity Features From Electrophysiological Data. ''Front Neuroinform''. 2021; '''15''': 713899
Data-driven reduction of dendritic morphologies with preserved dendro-somatic responses. Description: Wybo, Willem Am, et al. Data-driven reduction of dendritic morphologies with preserved dendro-somatic responses. ''Elife''. 2021 Jan 26; '''10''':
Neuronal population models reveal specific linear conductance controllers sufficient to rescue preclinical disease phenotypes. Description: Allam, Sushmita L, et al. Neuronal population models reveal specific linear conductance controllers sufficient to rescue preclinical disease phenotypes. ''iScience''. 2021 Nov 19; '''24''' (11):103279
Reduced inhibition in depression impairs stimulus processing in human cortical microcircuits. Description: Yao, Heng Kang, et al. Reduced inhibition in depression impairs stimulus processing in human cortical microcircuits. ''Cell Rep''. 2022 Jan 11; '''38''' (2):110232
Developmentally regulated impairment of parvalbumin interneuron synaptic transmission in an experimental model of Dravet syndrome. Description: Kaneko, Keisuke, et al. Developmentally regulated impairment of parvalbumin interneuron synaptic transmission in an experimental model of Dravet syndrome. ''Cell Rep''. 2022 Mar 29; '''38''' (13):110580
Cell type-specific mechanisms of information transfer in data-driven biophysical models of hippocampal CA3 principal neurons. Description: Linaro, Daniele, et al. Cell type-specific mechanisms of information transfer in data-driven biophysical models of hippocampal CA3 principal neurons. ''PLoS Comput Biol''. 2022 Apr; '''18''' (4):e1010071
Multi-modal characterization and simulation of human epileptic circuitry. Description: Buchin, Anatoly, et al. Multi-modal characterization and simulation of human epileptic circuitry. ''Cell Rep''. 2022 Dec 27; '''41''' (13):111873
Altered synaptic plasticity at hippocampal CA1-CA3 synapses in Alzheimer's disease: integration of amyloid precursor protein intracellular domain and amyloid beta effects into computational models. Description: Dainauskas, Justinas J, et al. Altered synaptic plasticity at hippocampal CA1-CA3 synapses in Alzheimer's disease: integration of amyloid precursor protein intracellular domain and amyloid beta effects into computational models. ''Front Comput Neurosci''. 2023; '''17''': 1305169
Strong and reliable synaptic communication between pyramidal neurons in adult human cerebral cortex. Description: Hunt, Sarah, et al. Strong and reliable synaptic communication between pyramidal neurons in adult human cerebral cortex. ''Cereb Cortex''. 2023 Mar 10; '''33''' (6):2857-2878
Modeling Synaptic Integration of Bursty and beta Oscillatory Inputs in Ventromedial Motor Thalamic Neurons in Normal and Parkinsonian States. Description: Cavarretta, Francesco, et al. Modeling Synaptic Integration of Bursty and beta Oscillatory Inputs in Ventromedial Motor Thalamic Neurons in Normal and Parkinsonian States. ''eNeuro''. 2023 Dec; '''10''' (12):
Human Purkinje cells outperform mouse Purkinje cells in dendritic complexity and computational capacity. Description: Masoli, Stefano, et al. Human Purkinje cells outperform mouse Purkinje cells in dendritic complexity and computational capacity. ''Commun Biol''. 2024 Jan 2; '''7''' (1):5
A structurally precise mechanism links an epilepsy-associated KCNC2 potassium channel mutation to interneuron dysfunction. Description: Clatot, Jerome, et al. A structurally precise mechanism links an epilepsy-associated KCNC2 potassium channel mutation to interneuron dysfunction. ''Proc Natl Acad Sci U S A''. 2024 Jan 16; '''121''' (3):e2307776121