PubMed Mentions

The links below are to publications on PubMed referring to QuickNII - Serial section aligner to volumetric atlases. This list is gathered weekly from PubMed automatically.

Publication/References
Spatial registration of serial microscopic brain images to three-dimensional reference atlases with the QuickNII tool. Description: Puchades, Maja A, et al. Spatial registration of serial microscopic brain images to three-dimensional reference atlases with the QuickNII tool. ''PLoS One''. 2019; '''14''' (5):e0216796
Brain-wide distribution of reporter expression in five transgenic tetracycline-transactivator mouse lines. Description: Lillehaug, Sveinung, et al. Brain-wide distribution of reporter expression in five transgenic tetracycline-transactivator mouse lines. ''Sci Data''. 2019 Feb 26; '''6''': 190028
Waxholm Space atlas of the rat brain auditory system: Three-dimensional delineations based on structural and diffusion tensor magnetic resonance imaging. Description: Osen, Kirsten K, et al. Waxholm Space atlas of the rat brain auditory system: Three-dimensional delineations based on structural and diffusion tensor magnetic resonance imaging. ''Neuroimage''. 2019 Oct 1; '''199''': 38-56
Database of literature derived cellular measurements from the murine basal ganglia. Description: Bjerke, Ingvild E, et al. Database of literature derived cellular measurements from the murine basal ganglia. ''Sci Data''. 2020 Jul 6; '''7''' (1):211
Phasic Activation of Dorsal Raphe Serotonergic Neurons Increases Pupil Size. Description: Cazettes, Fanny, et al. Phasic Activation of Dorsal Raphe Serotonergic Neurons Increases Pupil Size. ''Curr Biol''. 2021 Jan 11; '''31''' (1):192-197.e4
The topography of corticopontine projections is controlled by postmitotic expression of the area-mapping gene Nr2f1. Description: Tocco, Chiara, et al. The topography of corticopontine projections is controlled by postmitotic expression of the area-mapping gene Nr2f1. ''Development''. 2022 Mar 1; '''149''' (5):
DOPAMAP, high-resolution images of dopamine 1 and 2 receptor expression in developing and adult mouse brains. Description: Bjerke, I E, et al. DOPAMAP, high-resolution images of dopamine 1 and 2 receptor expression in developing and adult mouse brains. ''Sci Data''. 2022 Apr 19; '''9''' (1):175
Detecting the effect of genetic diversity on brain composition in an Alzheimer's disease mouse model. Description: Gurdon, Brianna, et al. Detecting the effect of genetic diversity on brain composition in an Alzheimer's disease mouse model. ''bioRxiv''. 2023 Feb 28;
A Timm-Nissl multiplane microscopic atlas of rat brain zincergic terminal fields and metal-containing glia. Description: Blixhavn, Camilla H, et al. A Timm-Nissl multiplane microscopic atlas of rat brain zincergic terminal fields and metal-containing glia. ''Sci Data''. 2023 Mar 21; '''10''' (1):150
Spike-based coupling between single neurons and populations across rat sensory cortices, perirhinal cortex, and hippocampus. Description: Dorman, Reinder, et al. Spike-based coupling between single neurons and populations across rat sensory cortices, perirhinal cortex, and hippocampus. ''Cereb Cortex''. 2023 Jun 20; '''33''' (13):8247-8264
The efferent connections of the orbitofrontal, posterior parietal, and insular cortex of the rat brain. Description: Reiten, Ingrid, et al. The efferent connections of the orbitofrontal, posterior parietal, and insular cortex of the rat brain. ''Sci Data''. 2023 Sep 21; '''10''' (1):645
The Locare workflow: representing neuroscience data locations as geometric objects in 3D brain atlases. Description: Blixhavn, Camilla H, et al. The Locare workflow: representing neuroscience data locations as geometric objects in 3D brain atlases. ''Front Neuroinform''. 2024; '''18''': 1284107
Neural correlates of object identity and reward outcome in the sensory cortical-hippocampal hierarchy: coding of motivational information in perirhinal cortex. Description: Fiorilli, Julien, et al. Neural correlates of object identity and reward outcome in the sensory cortical-hippocampal hierarchy: coding of motivational information in perirhinal cortex. ''Cereb Cortex''. 2024 Jan 31; '''34''' (2):
Spatial transcriptomics reveals molecular dysfunction associated with cortical Lewy pathology. Description: Goralski, Thomas M, et al. Spatial transcriptomics reveals molecular dysfunction associated with cortical Lewy pathology. ''Nat Commun''. 2024 Mar 26; '''15''' (1):2642
Comparison of basal ganglia regions across murine brain atlases using metadata models and the Waxholm Space. Description: Kleven, H, et al. Comparison of basal ganglia regions across murine brain atlases using metadata models and the Waxholm Space. ''Sci Data''. 2024 Sep 27; '''11''' (1):1036
Glial cells undergo rapid changes following acute chemogenetic manipulation of cortical layer 5 projection neurons. Description: Vadisiute, Auguste, et al. Glial cells undergo rapid changes following acute chemogenetic manipulation of cortical layer 5 projection neurons. ''Commun Biol''. 2024 Oct 9; '''7''' (1):1286