NITRC: CoCoMac Brain Connectivity Database: PubMed Mentions: Display Document

PubMed Mentions

The links below are to publications on PubMed referring to CoCoMac Brain Connectivity Database. This list is gathered weekly from PubMed automatically.

Publication/References
The brain atlas concordance problem: quantitative comparison of anatomical parcellations. Description: Bohland, Jason W, et al. The brain atlas concordance problem: quantitative comparison of anatomical parcellations. ''PLoS One''. 2009 Sep 29; '''4''' (9):e7200
Optimal hierarchical modular topologies for producing limited sustained activation of neural networks. Description: Kaiser, Marcus, et al. Optimal hierarchical modular topologies for producing limited sustained activation of neural networks. ''Front Neuroinform''. 2010; '''4''': 8
Visualizing neuronal network connectivity with connectivity pattern tables. Description: Nordlie, Eilen, et al. Visualizing neuronal network connectivity with connectivity pattern tables. ''Front Neuroinform''. 2010; '''3''': 39
Metaanalytic connectivity modeling: delineating the functional connectivity of the human amygdala. Description: Robinson, Jennifer L, et al. Metaanalytic connectivity modeling: delineating the functional connectivity of the human amygdala. ''Hum Brain Mapp''. 2010 Feb; '''31''' (2):173-84
Exploring brain function from anatomical connectivity. Description: Zamora-Lopez, Gorka, et al. Exploring brain function from anatomical connectivity. ''Front Neurosci''. 2011; '''5''': 83
Weight consistency specifies regularities of macaque cortical networks. Description: Markov, N T, et al. Weight consistency specifies regularities of macaque cortical networks. ''Cereb Cortex''. 2011 Jun; '''21''' (6):1254-72
A hybrid human and machine resource curation pipeline for the Neuroscience Information Framework. Description: Bandrowski, A E, et al. A hybrid human and machine resource curation pipeline for the Neuroscience Information Framework. ''Database (Oxford)''. 2012; '''2012''': bas005
Combining collation and annotation efforts toward completion of the rat and mouse connectomes in BAMS. Description: Bota, Mihail, et al. Combining collation and annotation efforts toward completion of the rat and mouse connectomes in BAMS. ''Front Neuroinform''. 2012; '''6''': 2
Communication and wiring in the cortical connectome. Description: Budd, Julian M L, et al. Communication and wiring in the cortical connectome. ''Front Neuroanat''. 2012; '''6''': 42
Mapping the connectome: multi-level analysis of brain connectivity. Description: Leergaard, Trygve B, et al. Mapping the connectome: multi-level analysis of brain connectivity. ''Front Neuroinform''. 2012; '''6''': 14
Rich club organization of macaque cerebral cortex and its role in network communication. Description: Harriger, Logan, et al. Rich club organization of macaque cerebral cortex and its role in network communication. ''PLoS One''. 2012; '''7''' (9):e46497
Virk: an active learning-based system for bootstrapping knowledge base development in the neurosciences. Description: Ambert, Kyle H, et al. Virk: an active learning-based system for bootstrapping knowledge base development in the neurosciences. ''Front Neuroinform''. 2013; '''7''': 38
Interactions between the neuromodulatory systems and the amygdala: exploratory survey using the Allen Mouse Brain Atlas. Description: Zaldivar, Andrew, et al. Interactions between the neuromodulatory systems and the amygdala: exploratory survey using the Allen Mouse Brain Atlas. ''Brain Struct Funct''. 2013 Nov; '''218''' (6):1513-30
Primate comparative neuroscience using magnetic resonance imaging: promises and challenges. Description: Mars, Rogier B, et al. Primate comparative neuroscience using magnetic resonance imaging: promises and challenges. ''Front Neurosci''. 2014; '''8''': 298
Linking macroscale graph analytical organization to microscale neuroarchitectonics in the macaque connectome. Description: Scholtens, Lianne H, et al. Linking macroscale graph analytical organization to microscale neuroarchitectonics in the macaque connectome. ''J Neurosci''. 2014 Sep 3; '''34''' (36):12192-205
BAMS2 workspace: a comprehensive and versatile neuroinformatic platform for collating and processing neuroanatomical connections. Description: Bota, Mihail, et al. BAMS2 workspace: a comprehensive and versatile neuroinformatic platform for collating and processing neuroanatomical connections. ''J Comp Neurol''. 2014 Oct 1; '''522''' (14):3160-76
A network convergence zone in the hippocampus. Description: Misic, Bratislav, et al. A network convergence zone in the hippocampus. ''PLoS Comput Biol''. 2014 Dec; '''10''' (12):e1003982
GRETNA: a graph theoretical network analysis toolbox for imaging connectomics. Description: Wang, Jinhui, et al. GRETNA: a graph theoretical network analysis toolbox for imaging connectomics. ''Front Hum Neurosci''. 2015; '''9''': 386
The Scalable Brain Atlas: Instant Web-Based Access to Public Brain Atlases and Related Content. Description: Bakker, Rembrandt, et al. The Scalable Brain Atlas: Instant Web-Based Access to Public Brain Atlases and Related Content. ''Neuroinformatics''. 2015 Jul; '''13''' (3):353-66
Comparison of diffusion tractography and tract-tracing measures of connectivity strength in rhesus macaque connectome. Description: van den Heuvel, Martijn P, et al. Comparison of diffusion tractography and tract-tracing measures of connectivity strength in rhesus macaque connectome. ''Hum Brain Mapp''. 2015 Aug; '''36''' (8):3064-75
Controllability of structural brain networks. Description: Gu, Shi, et al. Controllability of structural brain networks. ''Nat Commun''. 2015 Oct 1; '''6''': 8414
Building the Ferretome. Description: Sukhinin, Dmitrii I, et al. Building the Ferretome. ''Front Neuroinform''. 2016; '''10''': 16
Statistical Analysis of Tract-Tracing Experiments Demonstrates a Dense, Complex Cortical Network in the Mouse. Description: Ypma, Rolf J F, et al. Statistical Analysis of Tract-Tracing Experiments Demonstrates a Dense, Complex Cortical Network in the Mouse. ''PLoS Comput Biol''. 2016 Sep; '''12''' (9):e1005104
Functional complexity emerging from anatomical constraints in the brain: the significance of network modularity and rich-clubs. Description: Zamora-Lopez, Gorka, et al. Functional complexity emerging from anatomical constraints in the brain: the significance of network modularity and rich-clubs. ''Sci Rep''. 2016 Dec 5; '''6''': 38424
Predictive Model of Spread of Progressive Supranuclear Palsy Using Directional Network Diffusion. Description: Pandya, Sneha, et al. Predictive Model of Spread of Progressive Supranuclear Palsy Using Directional Network Diffusion. ''Front Neurol''. 2017; '''8''': 692
Features of spatial and functional segregation and integration of the primate connectome revealed by trade-off between wiring cost and efficiency. Description: Chen, Yuhan, et al. Features of spatial and functional segregation and integration of the primate connectome revealed by trade-off between wiring cost and efficiency. ''PLoS Comput Biol''. 2017 Sep; '''13''' (9):e1005776
Estimating the impact of structural directionality: How reliable are undirected connectomes? Description: Kale, Penelope, et al. Estimating the impact of structural directionality: How reliable are undirected connectomes? ''Netw Neurosci''. 2018; '''2''' (2):259-284
The hippocampal network model: A transdiagnostic metaconnectomic approach. Description: Kotkowski, Eithan, et al. The hippocampal network model: A transdiagnostic metaconnectomic approach. ''Neuroimage Clin''. 2018; '''18''': 115-129
The modulation of neural gain facilitates a transition between functional segregation and integration in the brain. Description: Shine, James M, et al. The modulation of neural gain facilitates a transition between functional segregation and integration in the brain. ''Elife''. 2018 Jan 29; '''7''':
Efficient communication dynamics on macro-connectome, and the propagation speed. Description: Shimono, Masanori, et al. Efficient communication dynamics on macro-connectome, and the propagation speed. ''Sci Rep''. 2018 Feb 6; '''8''' (1):2510
Multi-scale account of the network structure of macaque visual cortex. Description: Schmidt, Maximilian, et al. Multi-scale account of the network structure of macaque visual cortex. ''Brain Struct Funct''. 2018 Apr; '''223''' (3):1409-1435
Connectivity Fingerprints: From Areal Descriptions to Abstract Spaces. Description: Mars, Rogier B, et al. Connectivity Fingerprints: From Areal Descriptions to Abstract Spaces. ''Trends Cogn Sci''. 2018 Nov; '''22''' (11):1026-1037
Macro-connectomics and microstructure predict dynamic plasticity patterns in the non-human primate brain. Description: Froudist-Walsh, Sean, et al. Macro-connectomics and microstructure predict dynamic plasticity patterns in the non-human primate brain. ''Elife''. 2018 Nov 21; '''7''':
BOLD signal variability and complexity in children and adolescents with and without autism spectrum disorder. Description: Easson, Amanda K, et al. BOLD signal variability and complexity in children and adolescents with and without autism spectrum disorder. ''Dev Cogn Neurosci''. 2019 Apr; '''36''': 100630
A macaque connectome for large-scale network simulations in TheVirtualBrain. Description: Shen, Kelly, et al. A macaque connectome for large-scale network simulations in TheVirtualBrain. ''Sci Data''. 2019 Jul 17; '''6''' (1):123
Transitions in information processing dynamics at the whole-brain network level are driven by alterations in neural gain. Description: Li, Mike, et al. Transitions in information processing dynamics at the whole-brain network level are driven by alterations in neural gain. ''PLoS Comput Biol''. 2019 Oct; '''15''' (10):e1006957
Creative destruction: Sparse activity emerges on the mammal connectome under a simulated communication strategy with collisions and redundancy. Description: Hao, Yan, et al. Creative destruction: Sparse activity emerges on the mammal connectome under a simulated communication strategy with collisions and redundancy. ''Netw Neurosci''. 2020; '''4''' (4):1055-1071
Modeling the influence of the hippocampal memory system on the oculomotor system. Description: Ryan, Jennifer D, et al. Modeling the influence of the hippocampal memory system on the oculomotor system. ''Netw Neurosci''. 2020; '''4''' (1):217-233
A Large-Scale High-Density Weighted Structural Connectome of the Macaque Brain Acquired by Predicting Missing Links. Description: Chen, Yuhan, et al. A Large-Scale High-Density Weighted Structural Connectome of the Macaque Brain Acquired by Predicting Missing Links. ''Cereb Cortex''. 2020 Jul 30; '''30''' (9):4771-4789
Fine-Grained Topography and Modularity of the Macaque Frontal Pole Cortex Revealed by Anatomical Connectivity Profiles. Description: He, Bin, et al. Fine-Grained Topography and Modularity of the Macaque Frontal Pole Cortex Revealed by Anatomical Connectivity Profiles. ''Neurosci Bull''. 2020 Dec; '''36''' (12):1454-1473
Inferring network properties from time series using transfer entropy and mutual information: Validation of multivariate versus bivariate approaches. Description: Novelli, Leonardo, et al. Inferring network properties from time series using transfer entropy and mutual information: Validation of multivariate versus bivariate approaches. ''Netw Neurosci''. 2021; '''5''' (2):373-404
Meta-analytic connectivity modelling of deception-related brain regions. Description: Meier, Sarah K, et al. Meta-analytic connectivity modelling of deception-related brain regions. ''PLoS One''. 2021; '''16''' (8):e0248909
Hierarchical disruption in the cortex of anesthetized monkeys as a new signature of consciousness loss. Description: Signorelli, Camilo Miguel, et al. Hierarchical disruption in the cortex of anesthetized monkeys as a new signature of consciousness loss. ''Neuroimage''. 2021 Feb 15; '''227''': 117618
Organization of areal connectivity in the monkey frontoparietal network. Description: Conklin, Bryan D, et al. Organization of areal connectivity in the monkey frontoparietal network. ''Neuroimage''. 2021 Nov 1; '''241''': 118414
Deep brain stimulation of the thalamus restores signatures of consciousness in a nonhuman primate model. Description: Tasserie, Jordy, et al. Deep brain stimulation of the thalamus restores signatures of consciousness in a nonhuman primate model. ''Sci Adv''. 2022 Mar 18; '''8''' (11):eabl5547
Evolutionary shaping of human brain dynamics. Description: Pang, James C, et al. Evolutionary shaping of human brain dynamics. ''Elife''. 2022 Oct 26; '''11''':
Assortative mixing in micro-architecturally annotated brain connectomes. Description: Bazinet, Vincent, et al. Assortative mixing in micro-architecturally annotated brain connectomes. ''Nat Commun''. 2023 May 18; '''14''' (1):2850
Robust estimation of cortical similarity networks from brain MRI. Description: Sebenius, Isaac, et al. Robust estimation of cortical similarity networks from brain MRI. ''Nat Neurosci''. 2023 Aug; '''26''' (8):1461-1471
Brainwide mesoscale functional networks revealed by focal infrared neural stimulation of the amygdala. Description: Ping, An, et al. Brainwide mesoscale functional networks revealed by focal infrared neural stimulation of the amygdala. ''bioRxiv''. 2024 Feb 19;