PubMed Mentions
The links below are to publications on PubMed referring to TAPIR. This list is gathered weekly from PubMed automatically.
| Publication/References | |
| Diversity, expression and mRNA targeting abilities of Argonaute-targeting miRNAs among selected vascular plants. Description: Jagtap, Soham, et al. Diversity, expression and mRNA targeting abilities of Argonaute-targeting miRNAs among selected vascular plants. ''BMC Genomics''. 2014 Dec 2; '''15''': 1049 | |
| B-HIT - A Tool for Harvesting and Indexing Biodiversity Data. Description: Kelbert, Patricia, et al. B-HIT - A Tool for Harvesting and Indexing Biodiversity Data. ''PLoS One''. 2015; '''10''' (11):e0142240 | |
| Dicer-Dependent Biogenesis of Small RNAs and Evidence for MicroRNA-Like RNAs in the Penicillin Producing Fungus Penicillium chrysogenum. Description: Dahlmann, Tim A, et al. Dicer-Dependent Biogenesis of Small RNAs and Evidence for MicroRNA-Like RNAs in the Penicillin Producing Fungus Penicillium chrysogenum. ''PLoS One''. 2015; '''10''' (5):e0125989 | |
| Endogenous target mimics down-regulate miR160 mediation of ARF10, -16, and -17 cleavage during somatic embryogenesis in Dimocarpus longan Lour. Description: Lin, Yuling, et al. Endogenous target mimics down-regulate miR160 mediation of ARF10, -16, and -17 cleavage during somatic embryogenesis in Dimocarpus longan Lour. ''Front Plant Sci''. 2015; '''6''': 956 | |
| GraP: platform for functional genomics analysis of Gossypium raimondii. Description: Zhang, Liwei, et al. GraP: platform for functional genomics analysis of Gossypium raimondii. ''Database (Oxford)''. 2015; '''2015''': bav047 | |
| Identification and analysis of unitary loss of long-established protein-coding genes in Poaceae shows evidences for biased gene loss and putatively functional transcription of relics. Description: Zhao, Yi, et al. Identification and analysis of unitary loss of long-established protein-coding genes in Poaceae shows evidences for biased gene loss and putatively functional transcription of relics. ''BMC Evol Biol''. 2015 Apr 18; '''15''': 66 | |
| An integrative approach to identify hexaploid wheat miRNAome associated with development and tolerance to abiotic stress. Description: Agharbaoui, Zahra, et al. An integrative approach to identify hexaploid wheat miRNAome associated with development and tolerance to abiotic stress. ''BMC Genomics''. 2015 Apr 24; '''16''': 339 | |
| microRNAs and the evolution of complex multicellularity: identification of a large, diverse complement of microRNAs in the brown alga Ectocarpus. Description: Tarver, James E, et al. microRNAs and the evolution of complex multicellularity: identification of a large, diverse complement of microRNAs in the brown alga Ectocarpus. ''Nucleic Acids Res''. 2015 Jul 27; '''43''' (13):6384-98 | |
| Small RNAs from the wheat stripe rust fungus (Puccinia striiformis f.sp. tritici). Description: Mueth, Nicholas A, et al. Small RNAs from the wheat stripe rust fungus (Puccinia striiformis f.sp. tritici). ''BMC Genomics''. 2015 Sep 21; '''16''': 718 | |
| Small RNAs in Plant Responses to Abiotic Stresses: Regulatory Roles and Study Methods. Description: Ku, Yee-Shan, et al. Small RNAs in Plant Responses to Abiotic Stresses: Regulatory Roles and Study Methods. ''Int J Mol Sci''. 2015 Oct 15; '''16''' (10):24532-54 | |
| Phylogenomic methods outperform traditional multi-locus approaches in resolving deep evolutionary history: a case study of formicine ants. Description: Blaimer, Bonnie B, et al. Phylogenomic methods outperform traditional multi-locus approaches in resolving deep evolutionary history: a case study of formicine ants. ''BMC Evol Biol''. 2015 Dec 4; '''15''': 271 | |
| Identification of MicroRNA Targets of Capsicum spp. Using MiRTrans-a Trans-Omics Approach. Description: Zhang, Lu, et al. Identification of MicroRNA Targets of Capsicum spp. Using MiRTrans-a Trans-Omics Approach. ''Front Plant Sci''. 2017; '''8''': 495 | |
| Experience With Direct-to-Patient Recruitment for Enrollment Into a Clinical Trial in a Rare Disease: A Web-Based Study. Description: Krischer, Jeffrey, et al. Experience With Direct-to-Patient Recruitment for Enrollment Into a Clinical Trial in a Rare Disease: A Web-Based Study. ''J Med Internet Res''. 2017 Feb 28; '''19''' (2):e50 | |
| Transcriptome assembly in Suaeda aralocaspica to reveal the distinct temporal gene/miRNA alterations between the dimorphic seeds during germination. Description: Wang, Lei, et al. Transcriptome assembly in Suaeda aralocaspica to reveal the distinct temporal gene/miRNA alterations between the dimorphic seeds during germination. ''BMC Genomics''. 2017 Oct 19; '''18''' (1):806 | |
| A 3D two-point method for whole-brain water content and relaxation time mapping: Comparison with gold standard methods. Description: Schall, Melissa, et al. A 3D two-point method for whole-brain water content and relaxation time mapping: Comparison with gold standard methods. ''PLoS One''. 2018; '''13''' (8):e0201013 | |
| Noise and biases in genomic data may underlie radically different hypotheses for the position of Iguania within Squamata. Description: Mongiardino Koch, Nicolas, et al. Noise and biases in genomic data may underlie radically different hypotheses for the position of Iguania within Squamata. ''PLoS One''. 2018; '''13''' (8):e0202729 | |
| MiRNA160 is associated with local defense and systemic acquired resistance against Phytophthora infestans infection in potato. Description: Natarajan, Bhavani, et al. MiRNA160 is associated with local defense and systemic acquired resistance against Phytophthora infestans infection in potato. ''J Exp Bot''. 2018 Apr 9; '''69''' (8):2023-2036 | |
| Genome-wide identification and characterization of long non-coding RNAs involved in the early somatic embryogenesis in Dimocarpus longan Lour. Description: Chen, Yan, et al. Genome-wide identification and characterization of long non-coding RNAs involved in the early somatic embryogenesis in Dimocarpus longan Lour. ''BMC Genomics''. 2018 Nov 6; '''19''' (1):805 | |
| Analysis of miRNAs in Two Wheat Cultivars Infected With Puccinia striiformis f. sp. tritici. Description: Ramachandran, Sowmya R, et al. Analysis of miRNAs in Two Wheat Cultivars Infected With Puccinia striiformis f. sp. tritici. ''Front Plant Sci''. 2019; '''10''': 1574 | |
| Mining Magnaporthe oryzae sRNAs With Potential Transboundary Regulation of Rice Genes Associated With Growth and Defense Through Expression Profile Analysis of the Pathogen-Infected Rice. Description: Zhang, Hao, et al. Mining Magnaporthe oryzae sRNAs With Potential Transboundary Regulation of Rice Genes Associated With Growth and Defense Through Expression Profile Analysis of the Pathogen-Infected Rice. ''Front Genet''. 2019; '''10''': 296 | |
| Transcriptome and Phytochemical Analyses Provide New Insights Into Long Non-Coding RNAs Modulating Characteristic Secondary Metabolites of Oolong Tea (Camellia sinensis) in Solar-Withering. Description: Zhu, Chen, et al. Transcriptome and Phytochemical Analyses Provide New Insights Into Long Non-Coding RNAs Modulating Characteristic Secondary Metabolites of Oolong Tea (Camellia sinensis) in Solar-Withering. ''Front Plant Sci''. 2019; '''10''': 1638 | |
| Identification and characterization of pineapple leaf lncRNAs in crassulacean acid metabolism (CAM) photosynthesis pathway. Description: Bai, Youhuang, et al. Identification and characterization of pineapple leaf lncRNAs in crassulacean acid metabolism (CAM) photosynthesis pathway. ''Sci Rep''. 2019 Apr 30; '''9''' (1):6658 | |
| Discovering and Constructing ceRNA-miRNA-Target Gene Regulatory Networks during Anther Development in Maize. Description: Li, Ziwen, et al. Discovering and Constructing ceRNA-miRNA-Target Gene Regulatory Networks during Anther Development in Maize. ''Int J Mol Sci''. 2019 Jul 15; '''20''' (14): | |
| Genome-wide exploration and characterization of miR172/euAP2 genes in Brassica napus L. for likely role in flower organ development. Description: Wang, Tengyue, et al. Genome-wide exploration and characterization of miR172/euAP2 genes in Brassica napus L. for likely role in flower organ development. ''BMC Plant Biol''. 2019 Aug 1; '''19''' (1):336 | |
| miR828 and miR858 regulate VvMYB114 to promote anthocyanin and flavonol accumulation in grapes. Description: Tirumalai, Varsha, et al. miR828 and miR858 regulate VvMYB114 to promote anthocyanin and flavonol accumulation in grapes. ''J Exp Bot''. 2019 Sep 24; '''70''' (18):4775-4792 | |
| Characteristics of a cohort of high-risk men who have sex with men on pre-exposure prophylaxis reporting transgender sexual partners. Description: Hassan, Adiba, et al. Characteristics of a cohort of high-risk men who have sex with men on pre-exposure prophylaxis reporting transgender sexual partners. ''Medicine (Baltimore)''. 2019 Dec; '''98''' (50):e18232 | |
| SIGS vs HIGS: a study on the efficacy of two dsRNA delivery strategies to silence Fusarium FgCYP51 genes in infected host and non-host plants. Description: Koch, Aline, et al. SIGS vs HIGS: a study on the efficacy of two dsRNA delivery strategies to silence Fusarium FgCYP51 genes in infected host and non-host plants. ''Mol Plant Pathol''. 2019 Dec; '''20''' (12):1636-1644 | |
| Pesticide application has little influence on coding and non-coding gene expressions in rice. Description: Muhammad, Sajid, et al. Pesticide application has little influence on coding and non-coding gene expressions in rice. ''BMC Genomics''. 2019 Dec 23; '''20''' (1):1009 | |
| Comprehensive Atlas of Wheat (Triticum aestivum L.) AUXIN RESPONSE FACTOR Expression During Male Reproductive Development and Abiotic Stress. Description: Xu, Lei, et al. Comprehensive Atlas of Wheat (Triticum aestivum L.) AUXIN RESPONSE FACTOR Expression During Male Reproductive Development and Abiotic Stress. ''Front Plant Sci''. 2020; '''11''': 586144 | |
| Comparative Analysis of miRNA Expression Profiles Between Heat-Tolerant and Heat-Sensitive Genotypes of Flowering Chinese Cabbage Under Heat Stress Using High-Throughput Sequencing. Description: Ahmed, Waqas, et al. Comparative Analysis of miRNA Expression Profiles Between Heat-Tolerant and Heat-Sensitive Genotypes of Flowering Chinese Cabbage Under Heat Stress Using High-Throughput Sequencing. ''Genes (Basel)''. 2020 Feb 28; '''11''' (3): | |
| A novel approach to conducting clinical trials in the community setting: utilizing patient-driven platforms and social media to drive web-based patient recruitment. Description: Applequist, Janelle, et al. A novel approach to conducting clinical trials in the community setting: utilizing patient-driven platforms and social media to drive web-based patient recruitment. ''BMC Med Res Methodol''. 2020 Mar 13; '''20''' (1):58 | |
| Oomycete small RNAs bind to the plant RNA-induced silencing complex for virulence. Description: Dunker, Florian, et al. Oomycete small RNAs bind to the plant RNA-induced silencing complex for virulence. ''Elife''. 2020 May 22; '''9''': | |
| Plant-pathogen interactions: MicroRNA-mediated trans-kingdom gene regulation in fungi and their host plants. Description: Mathur, Monika, et al. Plant-pathogen interactions: MicroRNA-mediated trans-kingdom gene regulation in fungi and their host plants. ''Genomics''. 2020 Sep; '''112''' (5):3021-3035 | |
| Gene regulatory effects of a large chromosomal inversion in highland maize. Description: Crow, Taylor, et al. Gene regulatory effects of a large chromosomal inversion in highland maize. ''PLoS Genet''. 2020 Dec; '''16''' (12):e1009213 | |
| Computational Identification of miRNAs and Temperature-Responsive lncRNAs From Mango (Mangifera indica L.). Description: Moh, Nann Miky Moh, et al. Computational Identification of miRNAs and Temperature-Responsive lncRNAs From Mango (Mangifera indica L.). ''Front Genet''. 2021; '''12''': 607248 | |
| Fusarium graminearum DICER-like-dependent sRNAs are required for the suppression of host immune genes and full virulence. Description: Werner, Bernhard Timo, et al. Fusarium graminearum DICER-like-dependent sRNAs are required for the suppression of host immune genes and full virulence. ''PLoS One''. 2021; '''16''' (8):e0252365 | |
| Interplay between miRNAs and lncRNAs: Mode of action and biological roles in plant development and stress adaptation. Description: Meng, Xiangxiang, et al. Interplay between miRNAs and lncRNAs: Mode of action and biological roles in plant development and stress adaptation. ''Comput Struct Biotechnol J''. 2021; '''19''': 2567-2574 | |
| The long noncoding RNA FRILAIR regulates strawberry fruit ripening by functioning as a noncanonical target mimic. Description: Tang, Yajun, et al. The long noncoding RNA FRILAIR regulates strawberry fruit ripening by functioning as a noncanonical target mimic. ''PLoS Genet''. 2021 Mar; '''17''' (3):e1009461 | |
| Phytohormone and integrated mRNA and miRNA transcriptome analyses and differentiation of male between hermaphroditic floral buds of andromonoecious Diospyros kaki Thunb. Description: Li, Huawei, et al. Phytohormone and integrated mRNA and miRNA transcriptome analyses and differentiation of male between hermaphroditic floral buds of andromonoecious Diospyros kaki Thunb. ''BMC Genomics''. 2021 Mar 23; '''22''' (1):203 | |
| Investigation of long non-coding RNAs as regulatory players of grapevine response to powdery and downy mildew infection. Description: Bhatia, Garima, et al. Investigation of long non-coding RNAs as regulatory players of grapevine response to powdery and downy mildew infection. ''BMC Plant Biol''. 2021 Jun 8; '''21''' (1):265 | |
| Waterlogging-Stress-Responsive LncRNAs, Their Regulatory Relationships with miRNAs and Target Genes in Cucumber (Cucumis sativus L.). Description: Keska, Kinga, et al. Waterlogging-Stress-Responsive LncRNAs, Their Regulatory Relationships with miRNAs and Target Genes in Cucumber (Cucumis sativus L.). ''Int J Mol Sci''. 2021 Jul 30; '''22''' (15): | |
| Robust optimization of SWATH-MS workflow for human blood serum proteome analysis using a quality by design approach. Description: Serrano-Blesa, Edith, et al. Robust optimization of SWATH-MS workflow for human blood serum proteome analysis using a quality by design approach. ''Clin Proteomics''. 2021 Aug 12; '''18''' (1):20 | |
| Retrotransposons as pathogenicity factors of the plant pathogenic fungus Botrytis cinerea. Description: Porquier, Antoine, et al. Retrotransposons as pathogenicity factors of the plant pathogenic fungus Botrytis cinerea. ''Genome Biol''. 2021 Aug 16; '''22''' (1):225 | |
| Genome-Wide Discovery of miRNAs with Differential Expression Patterns in Responses to Salinity in the Two Contrasting Wheat Cultivars. Description: Zeeshan, Muhammad, et al. Genome-Wide Discovery of miRNAs with Differential Expression Patterns in Responses to Salinity in the Two Contrasting Wheat Cultivars. ''Int J Mol Sci''. 2021 Nov 21; '''22''' (22): | |
| Genome-wide investigation of microRNAs and expression profiles during rhizome development in ginger (Zingiber officinale Roscoe). Description: Xing, Haitao, et al. Genome-wide investigation of microRNAs and expression profiles during rhizome development in ginger (Zingiber officinale Roscoe). ''BMC Genomics''. 2022 Jan 13; '''23''' (1):49 | |
| Degradome comparison between wild and cultivated rice identifies differential targeting by miRNAs. Description: Swetha, Chenna, et al. Degradome comparison between wild and cultivated rice identifies differential targeting by miRNAs. ''BMC Genomics''. 2022 Jan 14; '''23''' (1):53 | |
| Comparative Small RNA and Degradome Sequencing Provides Insights into Antagonistic Interactions in the Biocontrol Fungus Clonostachys rosea. Description: Piombo, Edoardo, et al. Comparative Small RNA and Degradome Sequencing Provides Insights into Antagonistic Interactions in the Biocontrol Fungus Clonostachys rosea. ''Appl Environ Microbiol''. 2022 Jul 12; '''88''' (13):e0064322 | |
| Genome-Wide Identification and Characterization of the NF-YA Gene Family and Its Expression in Response to Different Nitrogen Forms in Populus x canescens. Description: Zhou, Jing, et al. Genome-Wide Identification and Characterization of the NF-YA Gene Family and Its Expression in Response to Different Nitrogen Forms in Populus x canescens. ''Int J Mol Sci''. 2022 Sep 23; '''23''' (19): | |
| miR482f and miR482c-5p from edible plant-derived foods inhibit the expression of pro-inflammatory genes in human THP-1 macrophages. Description: Diez-Sainz, Ester, et al. miR482f and miR482c-5p from edible plant-derived foods inhibit the expression of pro-inflammatory genes in human THP-1 macrophages. ''Front Nutr''. 2023; '''10''': 1287312 | |
| Viral synergism suppresses R gene-mediated resistance by impairing downstream defense mechanisms in soybean. Description: Alazem, Mazen, et al. Viral synergism suppresses R gene-mediated resistance by impairing downstream defense mechanisms in soybean. ''Plant Physiol''. 2023 Aug 3; '''192''' (4):3088-3105 | |
| Concurrent, Convergent, and Discriminant Validity of the DSM-5 Section III Psychopathy Specifier. Description: Fuller, Erin K, et al. Concurrent, Convergent, and Discriminant Validity of the DSM-5 Section III Psychopathy Specifier. ''Assessment''. 2023 Sep; '''30''' (6):1790-1810 | |
| TAPIR: a T-cell receptor language model for predicting rare and novel targets. Description: Fast, Ethan, et al. TAPIR: a T-cell receptor language model for predicting rare and novel targets. ''bioRxiv''. 2023 Sep 15; | |
| Integrated microRNA and whole-transcriptome sequencing reveals the involvement of small and long non-coding RNAs in the fiber growth of ramie plant. Description: Fu, Yafen, et al. Integrated microRNA and whole-transcriptome sequencing reveals the involvement of small and long non-coding RNAs in the fiber growth of ramie plant. ''BMC Genomics''. 2023 Oct 9; '''24''' (1):599 | |
| The Identification and Comparative Analysis of Non-Coding RNAs in Spores and Mycelia of Penicillium expansum. Description: Lai, Tongfei, et al. The Identification and Comparative Analysis of Non-Coding RNAs in Spores and Mycelia of Penicillium expansum. ''J Fungi (Basel)''. 2023 Oct 9; '''9''' (10): | |
| Genome-wide identification, stress- and hormone-responsive expression characteristics, and regulatory pattern analysis of Scutellaria baicalensis SbSPLs. Description: Wu, Jia-Wen, et al. Genome-wide identification, stress- and hormone-responsive expression characteristics, and regulatory pattern analysis of Scutellaria baicalensis SbSPLs. ''Plant Mol Biol''. 2024 Feb 16; '''114''' (2):20 | |
| Argonaute and Dicer are essential for communication between Trichoderma atroviride and fungal hosts during mycoparasitism. Description: Enriquez-Felix, Eli Efrain, et al. Argonaute and Dicer are essential for communication between Trichoderma atroviride and fungal hosts during mycoparasitism. ''Microbiol Spectr''. 2024 Apr 2; '''12''' (4):e0316523 | |
| Mutation mapping of a variegated EMS tomato reveals an FtsH-like protein precursor potentially causing patches of four phenotype classes in the leaves with distinctive internal morphology. Description: Dechkrong, Punyavee, et al. Mutation mapping of a variegated EMS tomato reveals an FtsH-like protein precursor potentially causing patches of four phenotype classes in the leaves with distinctive internal morphology. ''BMC Plant Biol''. 2024 Apr 10; '''24''' (1):265 |