PubMed Mentions
The links below are to publications on PubMed referring to BrainSuite. This list is gathered weekly from PubMed automatically.
| Publication/References | |
| Quantitative evaluation of automated skull-stripping methods applied to contemporary and legacy images: effects of diagnosis, bias correction, and slice location. Description: Fennema-Notestine, Christine, et al. Quantitative evaluation of automated skull-stripping methods applied to contemporary and legacy images: effects of diagnosis, bias correction, and slice location. ''Hum Brain Mapp''. 2006 Feb; '''27''' (2):99-113 | |
| A technique for the deidentification of structural brain MR images. Description: Bischoff-Grethe, Amanda, et al. A technique for the deidentification of structural brain MR images. ''Hum Brain Mapp''. 2007 Sep; '''28''' (9):892-903 | |
| Detecting brain growth patterns in normal children using tensor-based morphometry. Description: Hua, Xue, et al. Detecting brain growth patterns in normal children using tensor-based morphometry. ''Hum Brain Mapp''. 2009 Jan; '''30''' (1):209-19 | |
| Mapping brain abnormalities in boys with autism. Description: Brun, Caroline C, et al. Mapping brain abnormalities in boys with autism. ''Hum Brain Mapp''. 2009 Dec; '''30''' (12):3887-900 | |
| Brain growth rate abnormalities visualized in adolescents with autism. Description: Hua, Xue, et al. Brain growth rate abnormalities visualized in adolescents with autism. ''Hum Brain Mapp''. 2013 Feb; '''34''' (2):425-36 | |
| Functional dissociations in prefrontal-hippocampal working memory systems. Description: Hung, Yuwen, et al. Functional dissociations in prefrontal-hippocampal working memory systems. ''Cortex''. 2013 Apr; '''49''' (4):961-7 | |
| Angular versus spatial resolution trade-offs for diffusion imaging under time constraints. Description: Zhan, Liang, et al. Angular versus spatial resolution trade-offs for diffusion imaging under time constraints. ''Hum Brain Mapp''. 2013 Oct; '''34''' (10):2688-706 | |
| White matter microstructural abnormalities in girls with chromosome 22q11.2 deletion syndrome, Fragile X or Turner syndrome as evidenced by diffusion tensor imaging. Description: Villalon-Reina, Julio, et al. White matter microstructural abnormalities in girls with chromosome 22q11.2 deletion syndrome, Fragile X or Turner syndrome as evidenced by diffusion tensor imaging. ''Neuroimage''. 2013 Nov 1; '''81''': 441-454 | |
| Altered Structural and Functional Connectivity in Late Preterm Preadolescence: An Anatomic Seed-Based Study of Resting State Networks Related to the Posteromedial and Lateral Parietal Cortex. Description: Degnan, Andrew J, et al. Altered Structural and Functional Connectivity in Late Preterm Preadolescence: An Anatomic Seed-Based Study of Resting State Networks Related to the Posteromedial and Lateral Parietal Cortex. ''PLoS One''. 2015; '''10''' (6):e0130686 | |
| A Unified Framework for Brain Segmentation in MR Images. Description: Yazdani, S, et al. A Unified Framework for Brain Segmentation in MR Images. ''Comput Math Methods Med''. 2015; '''2015''': 829893 | |
| Multi-Shell Hybrid Diffusion Imaging (HYDI) at 7 Tesla in TgF344-AD Transgenic Alzheimer Rats. Description: Daianu, Madelaine, et al. Multi-Shell Hybrid Diffusion Imaging (HYDI) at 7 Tesla in TgF344-AD Transgenic Alzheimer Rats. ''PLoS One''. 2015; '''10''' (12):e0145205 | |
| Sex-related differences in auditory processing in adolescents with fetal alcohol spectrum disorder: A magnetoencephalographic study. Description: Tesche, Claudia D, et al. Sex-related differences in auditory processing in adolescents with fetal alcohol spectrum disorder: A magnetoencephalographic study. ''Neuroimage Clin''. 2015; '''7''': 571-87 | |
| Source-Space Cross-Frequency Amplitude-Amplitude Coupling in Tinnitus. Description: Zobay, Oliver, et al. Source-Space Cross-Frequency Amplitude-Amplitude Coupling in Tinnitus. ''Biomed Res Int''. 2015; '''2015''': 489619 | |
| A Digital Atlas of Middle to Large Brain Vessels and Their Relation to Cortical and Subcortical Structures. Description: Viviani, Roberto. A Digital Atlas of Middle to Large Brain Vessels and Their Relation to Cortical and Subcortical Structures. ''Front Neuroanat''. 2016; '''10''': 12 | |
| The Heterogeneity in Retrieved Relations between the Personality Trait 'Harm Avoidance' and Gray Matter Volumes Due to Variations in the VBM and ROI Labeling Processing Settings. Description: Van Schuerbeek, Peter, et al. The Heterogeneity in Retrieved Relations between the Personality Trait 'Harm Avoidance' and Gray Matter Volumes Due to Variations in the VBM and ROI Labeling Processing Settings. ''PLoS One''. 2016; '''11''' (4):e0153865 | |
| The superficial white matter in Alzheimer's disease. Description: Phillips, Owen R, et al. The superficial white matter in Alzheimer's disease. ''Hum Brain Mapp''. 2016 Apr; '''37''' (4):1321-34 | |
| Contrasting resting-state fMRI abnormalities from sickle and non-sickle anemia. Description: Coloigner, Julie, et al. Contrasting resting-state fMRI abnormalities from sickle and non-sickle anemia. ''PLoS One''. 2017; '''12''' (10):e0184860 | |
| Electrocorticography of Spatial Shifting and Attentional Selection in Human Superior Parietal Cortex. Description: Schrooten, Maarten, et al. Electrocorticography of Spatial Shifting and Attentional Selection in Human Superior Parietal Cortex. ''Front Hum Neurosci''. 2017; '''11''': 240 | |
| Hemoglobin and mean platelet volume predicts diffuse T1-MRI white matter volume decrease in sickle cell disease patients. Description: Choi, Soyoung, et al. Hemoglobin and mean platelet volume predicts diffuse T1-MRI white matter volume decrease in sickle cell disease patients. ''Neuroimage Clin''. 2017; '''15''': 239-246 | |
| Psychopathy Moderates the Relationship between Orbitofrontal and Striatal Alterations and Violence: The Investigation of Individuals Accused of Homicide. Description: Lam, Bess Y H, et al. Psychopathy Moderates the Relationship between Orbitofrontal and Striatal Alterations and Violence: The Investigation of Individuals Accused of Homicide. ''Front Hum Neurosci''. 2017; '''11''': 579 | |
| Asymmetric dopaminergic degeneration and levodopa alter functional corticostriatal connectivity bilaterally in experimental parkinsonism. Description: Monnot, Cyril, et al. Asymmetric dopaminergic degeneration and levodopa alter functional corticostriatal connectivity bilaterally in experimental parkinsonism. ''Exp Neurol''. 2017 Jun; '''292''': 11-20 | |
| Elavl3 is essential for the maintenance of Purkinje neuron axons. Description: Ogawa, Yuki, et al. Elavl3 is essential for the maintenance of Purkinje neuron axons. ''Sci Rep''. 2018 Feb 9; '''8''' (1):2722 | |
| Are you thinking what I'm thinking? Synchronization of resting fMRI time-series across subjects. Description: Joshi, Anand A, et al. Are you thinking what I'm thinking? Synchronization of resting fMRI time-series across subjects. ''Neuroimage''. 2018 May 15; '''172''': 740-752 | |
| Multiuser virtual reality environment for visualising neuroimaging data. Description: Shattuck, David W. Multiuser virtual reality environment for visualising neuroimaging data. ''Healthc Technol Lett''. 2018 Oct; '''5''' (5):183-188 | |
| Allostatic load and disordered white matter microstructure in overweight adults. Description: Ottino-Gonzalez, J, et al. Allostatic load and disordered white matter microstructure in overweight adults. ''Sci Rep''. 2018 Oct 26; '''8''' (1):15898 | |
| Pain-Related Fear-Dissociable Neural Sources of Different Fear Constructs. Description: Meier, Michael Lukas, et al. Pain-Related Fear-Dissociable Neural Sources of Different Fear Constructs. ''eNeuro''. 2018 Nov-Dec; '''5''' (6): | |
| CACNA1C risk variant affects microstructural connectivity of the amygdala. Description: Koch, Katharina, et al. CACNA1C risk variant affects microstructural connectivity of the amygdala. ''Neuroimage Clin''. 2019; '''22''': 101774 | |
| Early Pain Exposure Influences Functional Brain Connectivity in Very Preterm Neonates. Description: Tortora, Domenico, et al. Early Pain Exposure Influences Functional Brain Connectivity in Very Preterm Neonates. ''Front Neurosci''. 2019; '''13''': 899 | |
| Thalamic diaschisis following perinatal stroke is associated with clinical disability. Description: Craig, Brandon T, et al. Thalamic diaschisis following perinatal stroke is associated with clinical disability. ''Neuroimage Clin''. 2019; '''21''': 101660 | |
| A controlled comparison of thickness, volume and surface areas from multiple cortical parcellation packages. Description: Mikhael, Shadia S, et al. A controlled comparison of thickness, volume and surface areas from multiple cortical parcellation packages. ''BMC Bioinformatics''. 2019 Jan 28; '''20''' (1):55 | |
| Structural network disruption markers explain disability in multiple sclerosis. Description: Charalambous, Thalis, et al. Structural network disruption markers explain disability in multiple sclerosis. ''J Neurol Neurosurg Psychiatry''. 2019 Feb; '''90''' (2):219-226 | |
| Trastuzumab Induced Chemobrain, Atorvastatin Rescued Chemobrain with Enhanced Anticancer Effect and without Hair Loss-Side Effect. Description: Lee, Seonhwa, et al. Trastuzumab Induced Chemobrain, Atorvastatin Rescued Chemobrain with Enhanced Anticancer Effect and without Hair Loss-Side Effect. ''J Clin Med''. 2019 Feb 11; '''8''' (2): | |
| White matter neuro-plasticity in mental arithmetic: Changes in hippocampal connectivity following arithmetic drill training. Description: Klein, Elise, et al. White matter neuro-plasticity in mental arithmetic: Changes in hippocampal connectivity following arithmetic drill training. ''Cortex''. 2019 May; '''114''': 115-123 | |
| Neuromagnetic signatures of the spatiotemporal transformation for manual pointing. Description: Blohm, G, et al. Neuromagnetic signatures of the spatiotemporal transformation for manual pointing. ''Neuroimage''. 2019 Aug 15; '''197''': 306-319 | |
| atlasBREX: Automated template-derived brain extraction in animal MRI. Description: Lohmeier, Johannes, et al. atlasBREX: Automated template-derived brain extraction in animal MRI. ''Sci Rep''. 2019 Aug 21; '''9''' (1):12219 | |
| Neural tracking of speech mental imagery during rhythmic inner counting. Description: Lu, Lingxi, et al. Neural tracking of speech mental imagery during rhythmic inner counting. ''Elife''. 2019 Oct 22; '''8''': | |
| Association of white matter microstructural integrity with cognition and dementia. Description: Power, Melinda C, et al. Association of white matter microstructural integrity with cognition and dementia. ''Neurobiol Aging''. 2019 Nov; '''83''': 63-72 | |
| Scalp-to-cortex distance of left primary motor cortex and its computational head model: Implications for personalized neuromodulation. Description: Lu, Hanna, et al. Scalp-to-cortex distance of left primary motor cortex and its computational head model: Implications for personalized neuromodulation. ''CNS Neurosci Ther''. 2019 Nov; '''25''' (11):1270-1276 | |
| Automatic Segmentation of the Dorsal Claustrum in Humans Using in vivo High-Resolution MRI. Description: Berman, Shai, et al. Automatic Segmentation of the Dorsal Claustrum in Humans Using in vivo High-Resolution MRI. ''Cereb Cortex Commun''. 2020; '''1''' (1):tgaa062 | |
| Biomarkers of Seizure Activity in Patients With Intracranial Metastases and Gliomas: A Wide Range Study of Correlated Regions of Interest. Description: Kalakoti, Piyush, et al. Biomarkers of Seizure Activity in Patients With Intracranial Metastases and Gliomas: A Wide Range Study of Correlated Regions of Interest. ''Front Neurol''. 2020; '''11''': 444 | |
| Disrupted principal network organisation in multiple sclerosis relates to disability. Description: Charalambous, Thalis, et al. Disrupted principal network organisation in multiple sclerosis relates to disability. ''Sci Rep''. 2020 Feb 27; '''10''' (1):3620 | |
| The FAST graph: A novel framework for the anatomically-guided visualization and analysis of cortico-cortical evoked potentials. Description: Taylor, Kenneth N, et al. The FAST graph: A novel framework for the anatomically-guided visualization and analysis of cortico-cortical evoked potentials. ''Epilepsy Res''. 2020 Mar; '''161''': 106264 | |
| Distributed source analysis of magnetoencephalography using a volume head model combined with statistical methods improves focus diagnosis in epilepsy surgery. Description: Ishizaki, Tomotaka, et al. Distributed source analysis of magnetoencephalography using a volume head model combined with statistical methods improves focus diagnosis in epilepsy surgery. ''Sci Rep''. 2020 Mar 24; '''10''' (1):5263 | |
| Reduced apparent fiber density in the white matter of premature-born adults. Description: Menegaux, Aurore, et al. Reduced apparent fiber density in the white matter of premature-born adults. ''Sci Rep''. 2020 Oct 14; '''10''' (1):17214 | |
| Long-term development of white matter fibre density and morphology up to 13 years after preterm birth: A fixel-based analysis. Description: Kelly, Claire E, et al. Long-term development of white matter fibre density and morphology up to 13 years after preterm birth: A fixel-based analysis. ''Neuroimage''. 2020 Oct 15; '''220''': 117068 | |
| Shared functional connectivity between the dorso-medial and dorso-ventral streams in macaques. Description: Greulich, R Stefan, et al. Shared functional connectivity between the dorso-medial and dorso-ventral streams in macaques. ''Sci Rep''. 2020 Oct 29; '''10''' (1):18610 | |
| A probabilistic atlas of locus coeruleus pathways to transentorhinal cortex for connectome imaging in Alzheimer's disease. Description: Sun, Wei, et al. A probabilistic atlas of locus coeruleus pathways to transentorhinal cortex for connectome imaging in Alzheimer's disease. ''Neuroimage''. 2020 Dec; '''223''': 117301 | |
| Test-retest reproducibility of in vivo oscillating gradient and microscopic anisotropy diffusion MRI in mice at 9.4 Tesla. Description: Rahman, Naila, et al. Test-retest reproducibility of in vivo oscillating gradient and microscopic anisotropy diffusion MRI in mice at 9.4 Tesla. ''PLoS One''. 2021; '''16''' (11):e0255711 | |
| White matter abnormalities are key components of cerebrovascular disease impacting cognitive decline. Description: Vemuri, Prashanthi, et al. White matter abnormalities are key components of cerebrovascular disease impacting cognitive decline. ''Brain Commun''. 2021; '''3''' (2):fcab076 | |
| Widespread White Matter Alterations in Patients With Visual Snow Syndrome. Description: Michels, Lars, et al. Widespread White Matter Alterations in Patients With Visual Snow Syndrome. ''Front Neurol''. 2021; '''12''': 723805 | |
| Dynamic changes of region-specific cortical features and scalp-to-cortex distance: implications for transcranial current stimulation modeling. Description: Lu, Hanna, et al. Dynamic changes of region-specific cortical features and scalp-to-cortex distance: implications for transcranial current stimulation modeling. ''J Neuroeng Rehabil''. 2021 Jan 4; '''18''' (1):2 | |
| Neuroprotective effect of Val variant of BDNF Val66Met polymorphism on hippocampus is modulated by the severity of menstrual pain. Description: Li, Wei-Chi, et al. Neuroprotective effect of Val variant of BDNF Val66Met polymorphism on hippocampus is modulated by the severity of menstrual pain. ''Neuroimage Clin''. 2021 Jan 26; '''30''': 102576 | |
| Cortical and subcortical gray matter changes in patients with chronic tinnitus sustaining after vestibular schwannoma surgery. Description: Trakolis, Leonidas, et al. Cortical and subcortical gray matter changes in patients with chronic tinnitus sustaining after vestibular schwannoma surgery. ''Sci Rep''. 2021 Apr 16; '''11''' (1):8411 | |
| Chronic pain-related cortical neural activity in patients with complex regional pain syndrome. Description: Iwatsuki, Katsuyuki, et al. Chronic pain-related cortical neural activity in patients with complex regional pain syndrome. ''IBRO Neurosci Rep''. 2021 Jun; '''10''': 208-215 | |
| Feasibility of quantitative susceptibility mapping (QSM) of the human kidney. Description: Bechler, Eric, et al. Feasibility of quantitative susceptibility mapping (QSM) of the human kidney. ''MAGMA''. 2021 Jun; '''34''' (3):389-397 | |
| Increased extracellular fluid is associated with white matter fiber degeneration in CADASIL: in vivo evidence from diffusion magnetic resonance imaging. Description: Yu, Xinfeng, et al. Increased extracellular fluid is associated with white matter fiber degeneration in CADASIL: in vivo evidence from diffusion magnetic resonance imaging. ''Fluids Barriers CNS''. 2021 Jun 30; '''18''' (1):29 | |
| Development of brain white matter and math computation ability in children born very preterm and full-term. Description: Collins, Simonne E, et al. Development of brain white matter and math computation ability in children born very preterm and full-term. ''Dev Cogn Neurosci''. 2021 Jul 12; '''51''': 100987 | |
| Improved normalization of lesioned brains via cohort-specific templates. Description: Pappas, Ioannis, et al. Improved normalization of lesioned brains via cohort-specific templates. ''Hum Brain Mapp''. 2021 Sep; '''42''' (13):4187-4204 | |
| Validation of semi-automated anatomically labeled SEEG contacts in a brain atlas for mapping connectivity in focal epilepsy. Description: Taylor, Kenneth N, et al. Validation of semi-automated anatomically labeled SEEG contacts in a brain atlas for mapping connectivity in focal epilepsy. ''Epilepsia Open''. 2021 Sep; '''6''' (3):493-503 | |
| NuMorph: Tools for cortical cellular phenotyping in tissue-cleared whole-brain images. Description: Krupa, Oleh, et al. NuMorph: Tools for cortical cellular phenotyping in tissue-cleared whole-brain images. ''Cell Rep''. 2021 Oct 12; '''37''' (2):109802 | |
| Automated Brain Masking of Fetal Functional MRI with Open Data. Description: Rutherford, Saige, et al. Automated Brain Masking of Fetal Functional MRI with Open Data. ''Neuroinformatics''. 2022 Jan; '''20''' (1):173-185 | |
| Deep Quantile Regression for Uncertainty Estimation in Unsupervised and Supervised Lesion Detection. Description: Akrami, Haleh, et al. Deep Quantile Regression for Uncertainty Estimation in Unsupervised and Supervised Lesion Detection. ''J Mach Learn Biomed Imaging''. 2022; '''1''': | |
| The impact of levamisole and alcohol on white matter microstructure in adult chronic cocaine users. Description: Michels, Lars, et al. The impact of levamisole and alcohol on white matter microstructure in adult chronic cocaine users. ''Addict Biol''. 2022 May; '''27''' (3):e13149 | |
| A hybrid high-resolution anatomical MRI atlas with sub-parcellation of cortical gyri using resting fMRI. Description: Joshi, Anand A, et al. A hybrid high-resolution anatomical MRI atlas with sub-parcellation of cortical gyri using resting fMRI. ''J Neurosci Methods''. 2022 May 15; '''374''': 109566 | |
| White matter microstructure and the clinical risk for psychosis: A diffusion tensor imaging study of individuals with basic symptoms and at ultra-high risk. Description: Smigielski, Lukasz, et al. White matter microstructure and the clinical risk for psychosis: A diffusion tensor imaging study of individuals with basic symptoms and at ultra-high risk. ''Neuroimage Clin''. 2022 May 31; '''35''': 103067 | |
| Estimation of undistorted images in brain echo-planar images with distortions using the conjugate gradient method with anatomical regularization. Description: Kumazawa, Seiji, et al. Estimation of undistorted images in brain echo-planar images with distortions using the conjugate gradient method with anatomical regularization. ''Med Phys''. 2022 Dec; '''49''' (12):7531-7544 | |
| A longitudinal microstructural MRI dataset in healthy C57Bl/6 mice at 9.4 Tesla. Description: Rahman, Naila, et al. A longitudinal microstructural MRI dataset in healthy C57Bl/6 mice at 9.4 Tesla. ''Sci Data''. 2023 Feb 14; '''10''' (1):94 | |
| BrainSuite BIDS App: Containerized Workflows for MRI Analysis. Description: Kim, Yeun, et al. BrainSuite BIDS App: Containerized Workflows for MRI Analysis. ''bioRxiv''. 2023 Mar 15; | |
| Pinpointing the precise stimulation targets for brain rehabilitation in early-stage Parkinson's disease. Description: Lu, Hanna, et al. Pinpointing the precise stimulation targets for brain rehabilitation in early-stage Parkinson's disease. ''BMC Neurosci''. 2023 Mar 29; '''24''' (1):24 | |
| Human acute microelectrode array recordings with broad cortical access, single-unit resolution, and parallel behavioral monitoring. Description: Eisenkolb, Viktor M, et al. Human acute microelectrode array recordings with broad cortical access, single-unit resolution, and parallel behavioral monitoring. ''Cell Rep''. 2023 May 30; '''42''' (5):112467 | |
| Connectivity alteration in thalamic nuclei and default mode network-related area in memory processes in mesial temporal lobe epilepsy using magnetoencephalography. Description: Ishizaki, Tomotaka, et al. Connectivity alteration in thalamic nuclei and default mode network-related area in memory processes in mesial temporal lobe epilepsy using magnetoencephalography. ''Sci Rep''. 2023 Jun 30; '''13''' (1):10632 | |
| Diversity in verbal fluency performance and its associations with MRI-informed brain age matrices in normal ageing and neurocognitive disorders. Description: Lu, Hanna, et al. Diversity in verbal fluency performance and its associations with MRI-informed brain age matrices in normal ageing and neurocognitive disorders. ''CNS Neurosci Ther''. 2023 Jul; '''29''' (7):1865-1880 | |
| Estrogen receptor beta in astrocytes modulates cognitive function in mid-age female mice. Description: Itoh, Noriko, et al. Estrogen receptor beta in astrocytes modulates cognitive function in mid-age female mice. ''Nat Commun''. 2023 Sep 28; '''14''' (1):6044 | |
| MRI-informed machine learning-driven brain age models for classifying mild cognitive impairment converters. Description: Lu, Hanna, et al. MRI-informed machine learning-driven brain age models for classifying mild cognitive impairment converters. ''J Cent Nerv Syst Dis''. 2024; '''16''': 11795735241266556 | |
| Predictive values of pre-treatment brain age models to rTMS effects in neurocognitive disorder with depression: Secondary analysis of a randomised sham-controlled clinical trial. Description: Lu, Hanna, et al. Predictive values of pre-treatment brain age models to rTMS effects in neurocognitive disorder with depression: Secondary analysis of a randomised sham-controlled clinical trial. ''Dialogues Clin Neurosci''. 2024; '''26''' (1):38-52 | |
| Superficial white matter integrity in neuromyelitis optica spectrum disorder and multiple sclerosis. Description: Komnenic, Darko, et al. Superficial white matter integrity in neuromyelitis optica spectrum disorder and multiple sclerosis. ''Mult Scler J Exp Transl Clin''. 2024 Jan-Mar; '''10''' (1):20552173231226107 | |
| Decoding MRI-informed brain age using mutual information. Description: Li, Jing, et al. Decoding MRI-informed brain age using mutual information. ''Insights Imaging''. 2024 Aug 26; '''15''' (1):216 | |
| Mouse Brain Extractor: Brain segmentation of mouse MRI using global positional encoding and SwinUNETR. Description: Kim, Yeun, et al. Mouse Brain Extractor: Brain segmentation of mouse MRI using global positional encoding and SwinUNETR. ''bioRxiv''. 2024 Sep 8; | |
| Prediction of Post Traumatic Epilepsy Using MR-Based Imaging Markers. Description: Akrami, Haleh, et al. Prediction of Post Traumatic Epilepsy Using MR-Based Imaging Markers. ''Hum Brain Mapp''. 2024 Dec 1; '''45''' (17):e70075 |