PubMed Mentions

The links below are to publications on PubMed referring to DIAMOND. This list is gathered weekly from PubMed automatically.

Publication/References
Synthesis and molecular structure of methyl 4-O-methyl-alpha-D-glucopyranuronate. Description: Hirsch, Jan, et al. Synthesis and molecular structure of methyl 4-O-methyl-alpha-D-glucopyranuronate. ''Molecules''. 2005 Jan 31; '''10''' (1):251-8
Clinical implementation of dynamic intensity-modulated radiotherapy: Dosimetric aspects and initial experience. Description: Sivakumar, S S, et al. Clinical implementation of dynamic intensity-modulated radiotherapy: Dosimetric aspects and initial experience. ''J Med Phys''. 2008 Apr; '''33''' (2):64-71
Neisseria meningitidis recruits factor H using protein mimicry of host carbohydrates. Description: Schneider, Muriel C, et al. Neisseria meningitidis recruits factor H using protein mimicry of host carbohydrates. ''Nature''. 2009 Apr 16; '''458''' (7240):890-3
ATLANTIC DIP: pregnancy outcome for women with pregestational diabetes along the Irish Atlantic seaboard. Description: Dunne, Fidelma P, et al. ATLANTIC DIP: pregnancy outcome for women with pregestational diabetes along the Irish Atlantic seaboard. ''Diabetes Care''. 2009 Jul; '''32''' (7):1205-6
An autoinhibitory tyrosine motif in the cell-cycle-regulated Nek7 kinase is released through binding of Nek9. Description: Richards, Mark W, et al. An autoinhibitory tyrosine motif in the cell-cycle-regulated Nek7 kinase is released through binding of Nek9. ''Mol Cell''. 2009 Nov 25; '''36''' (4):560-70
Determining the neurotransmitter concentration profile at active synapses. Description: Scimemi, Annalisa, et al. Determining the neurotransmitter concentration profile at active synapses. ''Mol Neurobiol''. 2009 Dec; '''40''' (3):289-306
Synthesis and Characterization of a Linear [Mn(3)(O(2)CMe)(4)(py)(8)] Complex. Description: Moushi, Eleni E, et al. Synthesis and Characterization of a Linear [Mn(3)(O(2)CMe)(4)(py)(8)] Complex. ''Bioinorg Chem Appl''. 2010; 932569
Synthesis and Structural Characterization of a Metal Cluster and a Coordination Polymer Based on the [Mn(6)(mu(4)-O)(2)] Unit. Description: Moushi, Eleni E, et al. Synthesis and Structural Characterization of a Metal Cluster and a Coordination Polymer Based on the [Mn(6)(mu(4)-O)(2)] Unit. ''Bioinorg Chem Appl''. 2010; 367128
Zinc(II) and Nickel(II) Benzoate Complexes from the Use of 1-methyl-4,5-diphenylimidazole. Description: Kounavi, Konstantina A, et al. Zinc(II) and Nickel(II) Benzoate Complexes from the Use of 1-methyl-4,5-diphenylimidazole. ''Bioinorg Chem Appl''. 2010;
Structural determination of functional domains in early B-cell factor (EBF) family of transcription factors reveals similarities to Rel DNA-binding proteins and a novel dimerization motif. Description: Siponen, Marina I, et al. Structural determination of functional domains in early B-cell factor (EBF) family of transcription factors reveals similarities to Rel DNA-binding proteins and a novel dimerization motif. ''J Biol Chem''. 2010 Aug 20; '''285''' (34):25875-9
Synthesis, structures and properties of Cu(II) and Mn(II) complexes with 1,10-phenanthroline-2-carboxylic acid and 2,2'-bipyridine ligands. Description: Sun, Jingya, et al. Synthesis, structures and properties of Cu(II) and Mn(II) complexes with 1,10-phenanthroline-2-carboxylic acid and 2,2'-bipyridine ligands. ''Molecules''. 2010 Nov 15; '''15''' (11):8349-59
Solvothermal synthesis of uniform bismuth nanospheres using poly(N-vinyl-2-pyrrolidone) as a reducing agent. Description: Wu, Jiliang, et al. Solvothermal synthesis of uniform bismuth nanospheres using poly(N-vinyl-2-pyrrolidone) as a reducing agent. ''Nanoscale Res Lett''. 2011 Jan 12; '''6''' (1):66
Cyclic water clusters in tape-like and cage-like structures. Description: Huang, Qin, et al. Cyclic water clusters in tape-like and cage-like structures. ''Molecules''. 2011 Apr 4; '''16''' (4):2871-83
Crystal structures of ABL-related gene (ABL2) in complex with imatinib, tozasertib (VX-680), and a type I inhibitor of the triazole carbothioamide class. Description: Salah, Eidarus, et al. Crystal structures of ABL-related gene (ABL2) in complex with imatinib, tozasertib (VX-680), and a type I inhibitor of the triazole carbothioamide class. ''J Med Chem''. 2011 Apr 14; '''54''' (7):2359-67
Synthesis and crystal structure of 1,4,10,13-tetraoxa-7,16-diazoniumcyclo-octadecane bis(4-chloro-2-methyl-phenoxyacetate). Description: Adamovich, Sergey N, et al. Synthesis and crystal structure of 1,4,10,13-tetraoxa-7,16-diazoniumcyclo-octadecane bis(4-chloro-2-methyl-phenoxyacetate). ''Chem Cent J''. 2011 May 9; '''5''': 23
Incidence of atrial fibrillation in patients with either heart failure or acute myocardial infarction and left ventricular dysfunction: a cohort study. Description: Schmiegelow, Michelle D, et al. Incidence of atrial fibrillation in patients with either heart failure or acute myocardial infarction and left ventricular dysfunction: a cohort study. ''BMC Cardiovasc Disord''. 2011 May 14; '''11''': 19
The incidence of type 1 diabetes mellitus among 15-34 years aged Lithuanian population: 18-year incidence study based on prospective databases. Description: Ostrauskas, Rytas, et al. The incidence of type 1 diabetes mellitus among 15-34 years aged Lithuanian population: 18-year incidence study based on prospective databases. ''BMC Public Health''. 2011 Oct 19; '''11''': 813
The epidemiology and natural history of depressive disorders in Hong Kong's primary care. Description: Chin, Weng Yee, et al. The epidemiology and natural history of depressive disorders in Hong Kong's primary care. ''BMC Fam Pract''. 2011 Nov 24; '''12''': 129
In vitro anti-hepatitis B and SARS virus activities of a titanium-substituted-heteropolytungstate. Description: Qi, Yan-fei, et al. In vitro anti-hepatitis B and SARS virus activities of a titanium-substituted-heteropolytungstate. ''Antiviral Res''. 2012 Jan; '''93''' (1):118-25
Crystal structure of human aurora B in complex with INCENP and VX-680. Description: Elkins, Jonathan M, et al. Crystal structure of human aurora B in complex with INCENP and VX-680. ''J Med Chem''. 2012 Sep 13; '''55''' (17):7841-8
Structural and molecular basis of ZNRF3/RNF43 transmembrane ubiquitin ligase inhibition by the Wnt agonist R-spondin. Description: Zebisch, Matthias, et al. Structural and molecular basis of ZNRF3/RNF43 transmembrane ubiquitin ligase inhibition by the Wnt agonist R-spondin. ''Nat Commun''. 2013; '''4''': 2787
Thermal decomposition of [Co(en)3][Fe(CN)6] 2H2O: Topotactic dehydration process, valence and spin exchange mechanism elucidation. Description: Travnicek, Zdenek, et al. Thermal decomposition of [Co(en)3][Fe(CN)6] 2H2O: Topotactic dehydration process, valence and spin exchange mechanism elucidation. ''Chem Cent J''. 2013; '''7''': 28
Translating comparative effectiveness of depression medications into practice by comparing the depression medication choice decision aid to usual care: study protocol for a randomized controlled trial. Description: LeBlanc, Annie, et al. Translating comparative effectiveness of depression medications into practice by comparing the depression medication choice decision aid to usual care: study protocol for a randomized controlled trial. ''Trials''. 2013 May 7; '''14''': 127
Spectroscopic and theoretical studies of some 3-(4'-substituted phenylsulfanyl)-1-methyl-2-piperidones. Description: Olivato, Paulo R, et al. Spectroscopic and theoretical studies of some 3-(4'-substituted phenylsulfanyl)-1-methyl-2-piperidones. ''Molecules''. 2013 Jun 27; '''18''' (7):7492-509
Phosphanegold(I) dithiocarbamates, R3PAu[SC(=S)N((i)Pr)CH2CH2OH] for R = Ph, Cy and Et: role of phosphane-bound R substituents upon in vitro cytotoxicity against MCF-7R breast cancer cells and cell death pathways. Description: Jamaludin, Nazzatush Shimar, et al. Phosphanegold(I) dithiocarbamates, R3PAu[SC(=S)N((i)Pr)CH2CH2OH] for R = Ph, Cy and Et: role of phosphane-bound R substituents upon in vitro cytotoxicity against MCF-7R breast cancer cells and cell death pathways. ''Eur J Med Chem''. 2013 Sep; '''67''': 127-41
Correlation of Gas Permeability in a Metal-Organic Framework MIL-101(Cr)-Polysulfone Mixed-Matrix Membrane with Free Volume Measurements by Positron Annihilation Lifetime Spectroscopy (PALS). Description: Jeazet, Harold B Tanh, et al. Correlation of Gas Permeability in a Metal-Organic Framework MIL-101(Cr)-Polysulfone Mixed-Matrix Membrane with Free Volume Measurements by Positron Annihilation Lifetime Spectroscopy (PALS). ''Membranes (Basel)''. 2013 Oct 25; '''3''' (4):331-53
Crystal structure and stereochemistry study of 2-substituted benzoxazole derivatives. Description: Mabied, Ahmed F, et al. Crystal structure and stereochemistry study of 2-substituted benzoxazole derivatives. ''ISRN Org Chem''. 2014; '''2014''': 728343
Preparation, structural characterization, and decomposition studies of two new gamma-octamolybdates of 4-methylpyridine. Description: Szymanska, Anna, et al. Preparation, structural characterization, and decomposition studies of two new gamma-octamolybdates of 4-methylpyridine. ''Monatsh Chem''. 2014; '''145''' (6):921-929
Synthesis, molecular and crystal structure analysis of 1-(4-Methylbenzenesulfonyl)indole-3-carbaldehyde and DFT investigation of its rotational conformers. Description: Zukerman-Schpector, Julio, et al. Synthesis, molecular and crystal structure analysis of 1-(4-Methylbenzenesulfonyl)indole-3-carbaldehyde and DFT investigation of its rotational conformers. ''Molecules''. 2014 Feb 13; '''19''' (2):1990-2003
Synthesis, cytotoxicity and antibacterial activity of new esters of polyether antibiotic - salinomycin. Description: Antoszczak, Michal, et al. Synthesis, cytotoxicity and antibacterial activity of new esters of polyether antibiotic - salinomycin. ''Eur J Med Chem''. 2014 Apr 9; '''76''': 435-44
Novel Schiff bases based on the quinolinone skeleton: syntheses, X-ray structures and fluorescent properties. Description: Travnicek, Zdenek, et al. Novel Schiff bases based on the quinolinone skeleton: syntheses, X-ray structures and fluorescent properties. ''Molecules''. 2014 Sep 1; '''19''' (9):13509-25
Results of 1 year of clinical experience with independent dose calculation software for VMAT fields. Description: Colodro, Juan Fernando Mata, et al. Results of 1 year of clinical experience with independent dose calculation software for VMAT fields. ''J Med Phys''. 2014 Oct; '''39''' (4):219-24
Synthesis, anticancer and antibacterial activity of salinomycin N-benzyl amides. Description: Antoszczak, Michal, et al. Synthesis, anticancer and antibacterial activity of salinomycin N-benzyl amides. ''Molecules''. 2014 Nov 25; '''19''' (12):19435-59
Assessing organizational readiness for depression care quality improvement: relative commitment and implementation capability. Description: Rubenstein, Lisa V, et al. Assessing organizational readiness for depression care quality improvement: relative commitment and implementation capability. ''Implement Sci''. 2014 Dec 2; '''9''': 173
Dual Transcriptomic Profiling of Host and Microbiota during Health and Disease in Pediatric Asthma. Description: Perez-Losada, Marcos, et al. Dual Transcriptomic Profiling of Host and Microbiota during Health and Disease in Pediatric Asthma. ''PLoS One''. 2015; '''10''' (6):e0131819
Microbial Communities Can Be Described by Metabolic Structure: A General Framework and Application to a Seasonally Variable, Depth-Stratified Microbial Community from the Coastal West Antarctic Peninsula. Description: Bowman, Jeff S, et al. Microbial Communities Can Be Described by Metabolic Structure: A General Framework and Application to a Seasonally Variable, Depth-Stratified Microbial Community from the Coastal West Antarctic Peninsula. ''PLoS One''. 2015; '''10''' (8):e0135868
Microwave-assisted preparation, structural characterization, lipophilicity, and anti-cancer assay of some hydroxycoumarin derivatives. Description: Ostrowska, Kinga, et al. Microwave-assisted preparation, structural characterization, lipophilicity, and anti-cancer assay of some hydroxycoumarin derivatives. ''Monatsh Chem''. 2015; '''146''' (1):89-98
Organometallic Half-Sandwich Dichloridoruthenium(II) Complexes with 7-Azaindoles: Synthesis, Characterization and Elucidation of Their Anticancer Inactivity against A2780 Cell Line. Description: Starha, Pavel, et al. Organometallic Half-Sandwich Dichloridoruthenium(II) Complexes with 7-Azaindoles: Synthesis, Characterization and Elucidation of Their Anticancer Inactivity against A2780 Cell Line. ''PLoS One''. 2015; '''10''' (11):e0143871
Synthesis, characterization, monolayer assembly and 2D lanthanide coordination of a linear terphenyl-di(propiolonitrile) linker on Ag(111). Description: Chen, Zhi, et al. Synthesis, characterization, monolayer assembly and 2D lanthanide coordination of a linear terphenyl-di(propiolonitrile) linker on Ag(111). ''Beilstein J Nanotechnol''. 2015; '''6''': 327-35
The effect of temperature and pressure on the crystal structure of piperidine. Description: Budd, Laura E, et al. The effect of temperature and pressure on the crystal structure of piperidine. ''Chem Cent J''. 2015; '''9''': 18
The phase transformation of CuInS2 from chalcopyrite to wurtzite. Description: Xie, Bing-Bing, et al. The phase transformation of CuInS2 from chalcopyrite to wurtzite. ''Nanoscale Res Lett''. 2015; '''10''': 86
Synthesis, crystal structure, spectroscopic properties and potential biological activities of salicylateneocuproine ternary copper(II) complexes. Description: Kuckova, Lenka, et al. Synthesis, crystal structure, spectroscopic properties and potential biological activities of salicylateneocuproine ternary copper(II) complexes. ''Molecules''. 2015 Jan 27; '''20''' (2):2115-37
Synthesis and biological activity of salinomycin conjugates with floxuridine. Description: Huczynski, Adam, et al. Synthesis and biological activity of salinomycin conjugates with floxuridine. ''Eur J Med Chem''. 2015 Mar 26; '''93''': 33-41
A DIseAse MOdule Detection (DIAMOnD) algorithm derived from a systematic analysis of connectivity patterns of disease proteins in the human interactome. Description: Ghiassian, Susan Dina, et al. A DIseAse MOdule Detection (DIAMOnD) algorithm derived from a systematic analysis of connectivity patterns of disease proteins in the human interactome. ''PLoS Comput Biol''. 2015 Apr; '''11''' (4):e1004120
Synthesis, characterization and biological evaluation of transition metal complexes derived from N, S bidentate ligands. Description: Md Yusof, Enis Nadia, et al. Synthesis, characterization and biological evaluation of transition metal complexes derived from N, S bidentate ligands. ''Int J Mol Sci''. 2015 May 15; '''16''' (5):11034-54
Molecular mechanisms of human IRE1 activation through dimerization and ligand binding. Description: Joshi, Amar, et al. Molecular mechanisms of human IRE1 activation through dimerization and ligand binding. ''Oncotarget''. 2015 May 30; '''6''' (15):13019-35
Renal Function in De Novo Liver Transplant Recipients Receiving Different Prolonged-Release Tacrolimus Regimens-The DIAMOND Study. Description: TruneCka, P, et al. Renal Function in De Novo Liver Transplant Recipients Receiving Different Prolonged-Release Tacrolimus Regimens-The DIAMOND Study. ''Am J Transplant''. 2015 Jul; '''15''' (7):1843-54
Crystal structure of R-spondin 2 in complex with the ectodomains of its receptors LGR5 and ZNRF3. Description: Zebisch, Matthias, et al. Crystal structure of R-spondin 2 in complex with the ectodomains of its receptors LGR5 and ZNRF3. ''J Struct Biol''. 2015 Aug; '''191''' (2):149-55
The Long Term Impact of Micronutrient Supplementation during Infancy on Cognition and Executive Function Performance in Pre-School Children. Description: Warthon-Medina, Marisol, et al. The Long Term Impact of Micronutrient Supplementation during Infancy on Cognition and Executive Function Performance in Pre-School Children. ''Nutrients''. 2015 Aug 7; '''7''' (8):6606-27
Magnetically-induced ferroelectricity in the (ND4)2[FeCl5(D2O)] molecular compound. Description: Alberto Rodriguez-Velamazan, Jose, et al. Magnetically-induced ferroelectricity in the (ND4)2[FeCl5(D2O)] molecular compound. ''Sci Rep''. 2015 Sep 29; '''5''': 14475
Why sildenafil and sildenafil citrate monohydrate crystals are not stable? Description: Sawatdee, Somchai, et al. Why sildenafil and sildenafil citrate monohydrate crystals are not stable? ''Saudi Pharm J''. 2015 Oct; '''23''' (5):504-14
Spatially extensive microbial biogeography of the Indian Ocean provides insights into the unique community structure of a pristine coral atoll. Description: Jeffries, Thomas C, et al. Spatially extensive microbial biogeography of the Indian Ocean provides insights into the unique community structure of a pristine coral atoll. ''Sci Rep''. 2015 Oct 20; '''5''': 15383
Tripartite ATP-independent Periplasmic (TRAP) Transporters Use an Arginine-mediated Selectivity Filter for High Affinity Substrate Binding. Description: Fischer, Marcus, et al. Tripartite ATP-independent Periplasmic (TRAP) Transporters Use an Arginine-mediated Selectivity Filter for High Affinity Substrate Binding. ''J Biol Chem''. 2015 Nov 6; '''290''' (45):27113-23
Long-lived Aqueous Rechargeable Lithium Batteries Using Mesoporous LiTi2(PO4)3@C Anode. Description: Sun, Dan, et al. Long-lived Aqueous Rechargeable Lithium Batteries Using Mesoporous LiTi2(PO4)3@C Anode. ''Sci Rep''. 2015 Dec 9; '''5''': 17452
Ba(1-x)Sr(x)Zn2Si2O7--A new family of materials with negative and very high thermal expansion. Description: Thieme, Christian, et al. Ba(1-x)Sr(x)Zn2Si2O7--A new family of materials with negative and very high thermal expansion. ''Sci Rep''. 2015 Dec 15; '''5''': 18040
Complete nitrification by a single microorganism. Description: van Kessel, Maartje A H J, et al. Complete nitrification by a single microorganism. ''Nature''. 2015 Dec 24; '''528''' (7583):555-9
A Bayesian inference method for the analysis of transcriptional regulatory networks in metagenomic data. Description: Hobbs, Elizabeth T, et al. A Bayesian inference method for the analysis of transcriptional regulatory networks in metagenomic data. ''Algorithms Mol Biol''. 2016; '''11''': 19
Chemical Species, Micromorphology, and XRD Fingerprint Analysis of Tibetan Medicine Zuotai Containing Mercury. Description: Li, Cen, et al. Chemical Species, Micromorphology, and XRD Fingerprint Analysis of Tibetan Medicine Zuotai Containing Mercury. ''Bioinorg Chem Appl''. 2016; '''2016''': 7010519
Discovery and Partial Genomic Characterisation of a Novel Nidovirus Associated with Respiratory Disease in Wild Shingleback Lizards (Tiliqua rugosa). Description: O'Dea, Mark A, et al. Discovery and Partial Genomic Characterisation of a Novel Nidovirus Associated with Respiratory Disease in Wild Shingleback Lizards (Tiliqua rugosa). ''PLoS One''. 2016; '''11''' (11):e0165209
Functional Metagenomics of Spacecraft Assembly Cleanrooms: Presence of Virulence Factors Associated with Human Pathogens. Description: Bashir, Mina, et al. Functional Metagenomics of Spacecraft Assembly Cleanrooms: Presence of Virulence Factors Associated with Human Pathogens. ''Front Microbiol''. 2016; '''7''': 1321
Metagenomic analysis of an ecological wastewater treatment plant's microbial communities and their potential to metabolize pharmaceuticals. Description: Balcom, Ian N, et al. Metagenomic analysis of an ecological wastewater treatment plant's microbial communities and their potential to metabolize pharmaceuticals. ''F1000Res''. 2016; '''5''': 1881
MetaStorm: A Public Resource for Customizable Metagenomics Annotation. Description: Arango-Argoty, Gustavo, et al. MetaStorm: A Public Resource for Customizable Metagenomics Annotation. ''PLoS One''. 2016; '''11''' (9):e0162442
Platinum(II) Iodido Complexes of 7-Azaindoles with Significant Antiproliferative Effects: An Old Story Revisited with Unexpected Outcomes. Description: Starha, Pavel, et al. Platinum(II) Iodido Complexes of 7-Azaindoles with Significant Antiproliferative Effects: An Old Story Revisited with Unexpected Outcomes. ''PLoS One''. 2016; '''11''' (12):e0165062
Reconstructing ecosystem functions of the active microbial community of the Baltic Sea oxygen depleted sediments. Description: Thureborn, Petter, et al. Reconstructing ecosystem functions of the active microbial community of the Baltic Sea oxygen depleted sediments. ''PeerJ''. 2016; '''4''': e1593
The Common Gut Microbe Eubacterium hallii also Contributes to Intestinal Propionate Formation. Description: Engels, Christina, et al. The Common Gut Microbe Eubacterium hallii also Contributes to Intestinal Propionate Formation. ''Front Microbiol''. 2016; '''7''': 713
Utilization of a mental health collaborative care model among patients who require interpreter services. Description: Njeru, Jane W, et al. Utilization of a mental health collaborative care model among patients who require interpreter services. ''Int J Ment Health Syst''. 2016; '''10''': 15
Validation of picogram- and femtogram-input DNA libraries for microscale metagenomics. Description: Rinke, Christian, et al. Validation of picogram- and femtogram-input DNA libraries for microscale metagenomics. ''PeerJ''. 2016; '''4''': e2486
Assessment of k-mer spectrum applicability for metagenomic dissimilarity analysis. Description: Dubinkina, Veronika B, et al. Assessment of k-mer spectrum applicability for metagenomic dissimilarity analysis. ''BMC Bioinformatics''. 2016 Jan 16; '''17''': 38
SUPER-FOCUS: a tool for agile functional analysis of shotgun metagenomic data. Description: Silva, Genivaldo Gueiros Z, et al. SUPER-FOCUS: a tool for agile functional analysis of shotgun metagenomic data. ''Bioinformatics''. 2016 Feb 1; '''32''' (3):354-61
Stability-Indicating HPLC Method for Simultaneous Determination of Chloramphenicol, Dexamethasone Sodium Phosphate and Tetrahydrozoline Hydrochloride in Ophthalmic Solution. Description: AlAani, Hashem, et al. Stability-Indicating HPLC Method for Simultaneous Determination of Chloramphenicol, Dexamethasone Sodium Phosphate and Tetrahydrozoline Hydrochloride in Ophthalmic Solution. ''Adv Pharm Bull''. 2016 Mar; '''6''' (1):137-41
Comparative transcriptome analysis of Gastrodia elata (Orchidaceae) in response to fungus symbiosis to identify gastrodin biosynthesis-related genes. Description: Tsai, Chi-Chu, et al. Comparative transcriptome analysis of Gastrodia elata (Orchidaceae) in response to fungus symbiosis to identify gastrodin biosynthesis-related genes. ''BMC Genomics''. 2016 Mar 9; '''17''': 212
Single-Cell Genome and Group-Specific dsrAB Sequencing Implicate Marine Members of the Class Dehalococcoidia (Phylum Chloroflexi) in Sulfur Cycling. Description: Wasmund, Kenneth, et al. Single-Cell Genome and Group-Specific dsrAB Sequencing Implicate Marine Members of the Class Dehalococcoidia (Phylum Chloroflexi) in Sulfur Cycling. ''MBio''. 2016 May 3; '''7''' (3):
Integrative microbial community analysis reveals full-scale enhanced biological phosphorus removal under tropical conditions. Description: Law, Yingyu, et al. Integrative microbial community analysis reveals full-scale enhanced biological phosphorus removal under tropical conditions. ''Sci Rep''. 2016 May 19; '''6''': 25719
Taxonomer: an interactive metagenomics analysis portal for universal pathogen detection and host mRNA expression profiling. Description: Flygare, Steven, et al. Taxonomer: an interactive metagenomics analysis portal for universal pathogen detection and host mRNA expression profiling. ''Genome Biol''. 2016 May 26; '''17''' (1):111
Comparison of 2-year clinical outcomes between diabetic versus nondiabetic patients with acute myocardial infarction after 1-month stabilization: Analysis of the prospective registry of DIAMOND (DIabetic acute myocardial infarctiON Disease) in Korea: ... Description: Hur, Seung-Ho, et al. Comparison of 2-year clinical outcomes between diabetic versus nondiabetic patients with acute myocardial infarction after 1-month stabilization: Analysis of the prospective registry of DIAMOND (DIabetic acute myocardial infarctiON Disease) in Korea: an observational registry study. ''Medicine (Baltimore)''. 2016 Jun; '''95''' (25):e3882
Endophenotype Network Models: Common Core of Complex Diseases. Description: Ghiassian, Susan Dina, et al. Endophenotype Network Models: Common Core of Complex Diseases. ''Sci Rep''. 2016 Jun 9; '''6''': 27414
The genome of the yellow potato cyst nematode, Globodera rostochiensis, reveals insights into the basis of parasitism and virulence. Description: Eves-van den Akker, Sebastian, et al. The genome of the yellow potato cyst nematode, Globodera rostochiensis, reveals insights into the basis of parasitism and virulence. ''Genome Biol''. 2016 Jun 10; '''17''' (1):124
MetaPro-IQ: a universal metaproteomic approach to studying human and mouse gut microbiota. Description: Zhang, Xu, et al. MetaPro-IQ: a universal metaproteomic approach to studying human and mouse gut microbiota. ''Microbiome''. 2016 Jun 24; '''4''' (1):31
Expanding the view on the evolution of the nematode dauer signalling pathways: refinement through gene gain and pathway co-option. Description: Gilabert, Aude, et al. Expanding the view on the evolution of the nematode dauer signalling pathways: refinement through gene gain and pathway co-option. ''BMC Genomics''. 2016 Jun 27; '''17''': 476
A metagenomic-based survey of microbial (de)halogenation potential in a German forest soil. Description: Weigold, Pascal, et al. A metagenomic-based survey of microbial (de)halogenation potential in a German forest soil. ''Sci Rep''. 2016 Jun 29; '''6''': 28958
Structure of the Dual-Mode Wnt Regulator Kremen1 and Insight into Ternary Complex Formation with LRP6 and Dickkopf. Description: Zebisch, Matthias, et al. Structure of the Dual-Mode Wnt Regulator Kremen1 and Insight into Ternary Complex Formation with LRP6 and Dickkopf. ''Structure''. 2016 Sep 6; '''24''' (9):1599-605
New insight into the structural, electrochemical and biological aspects of macroacyclic Cu(II) complexes derived from S-substituted dithiocarbazate schiff bases. Description: Low, May Lee, et al. New insight into the structural, electrochemical and biological aspects of macroacyclic Cu(II) complexes derived from S-substituted dithiocarbazate schiff bases. ''Eur J Med Chem''. 2016 Sep 14; '''120''': 1-12
Novel highly divergent reassortant bat rotaviruses in Cameroon, without evidence of zoonosis. Description: Yinda, Claude Kwe, et al. Novel highly divergent reassortant bat rotaviruses in Cameroon, without evidence of zoonosis. ''Sci Rep''. 2016 Sep 26; '''6''': 34209
Defining the microbial transcriptional response to colitis through integrated host and microbiome profiling. Description: Ilott, Nicholas Edward, et al. Defining the microbial transcriptional response to colitis through integrated host and microbiome profiling. ''ISME J''. 2016 Oct; '''10''' (10):2389-404
Interactome-transcriptome analysis discovers signatures complementary to GWAS Loci of Type 2 Diabetes. Description: Li, Jing-Woei, et al. Interactome-transcriptome analysis discovers signatures complementary to GWAS Loci of Type 2 Diabetes. ''Sci Rep''. 2016 Oct 18; '''6''': 35228
Ionic Liquids Impact the Bioenergy Feedstock-Degrading Microbiome and Transcription of Enzymes Relevant to Polysaccharide Hydrolysis. Description: Wu, Yu-Wei, et al. Ionic Liquids Impact the Bioenergy Feedstock-Degrading Microbiome and Transcription of Enzymes Relevant to Polysaccharide Hydrolysis. ''mSystems''. 2016 Nov-Dec; '''1''' (6):
Tsetse fly tolerance to T. brucei infection: transcriptome analysis of trypanosome-associated changes in the tsetse fly salivary gland. Description: Matetovici, Irina, et al. Tsetse fly tolerance to T. brucei infection: transcriptome analysis of trypanosome-associated changes in the tsetse fly salivary gland. ''BMC Genomics''. 2016 Nov 25; '''17''' (1):971
Metagenomic profiling of historic Colorado Front Range flood impact on distribution of riverine antibiotic resistance genes. Description: Garner, Emily, et al. Metagenomic profiling of historic Colorado Front Range flood impact on distribution of riverine antibiotic resistance genes. ''Sci Rep''. 2016 Dec 5; '''6''': 38432
In Vitro Antitumor Active Gold(I) Triphenylphosphane Complexes Containing 7-Azaindoles. Description: Starha, Pavel, et al. In Vitro Antitumor Active Gold(I) Triphenylphosphane Complexes Containing 7-Azaindoles. ''Int J Mol Sci''. 2016 Dec 11; '''17''' (12):
Disentangling the influence of earthworms in sugarcane rhizosphere. Description: Braga, Lucas P P, et al. Disentangling the influence of earthworms in sugarcane rhizosphere. ''Sci Rep''. 2016 Dec 15; '''6''': 38923
Half-Sandwich Ru(II) Halogenido, Valproato and 4-Phenylbutyrato Complexes Containing 2,2'-Dipyridylamine: Synthesis, Characterization, Solution Chemistry and In Vitro Cytotoxicity. Description: Starha, Pavel, et al. Half-Sandwich Ru(II) Halogenido, Valproato and 4-Phenylbutyrato Complexes Containing 2,2'-Dipyridylamine: Synthesis, Characterization, Solution Chemistry and In Vitro Cytotoxicity. ''Molecules''. 2016 Dec 15; '''21''' (12):
Analysis of Plant Pan-Genomes and Transcriptomes with GET_HOMOLOGUES-EST, a Clustering Solution for Sequences of the Same Species. Description: Contreras-Moreira, Bruno, et al. Analysis of Plant Pan-Genomes and Transcriptomes with GET_HOMOLOGUES-EST, a Clustering Solution for Sequences of the Same Species. ''Front Plant Sci''. 2017; '''8''': 184
Antibiotic resistance potential of the healthy preterm infant gut microbiome. Description: Rose, Graham, et al. Antibiotic resistance potential of the healthy preterm infant gut microbiome. ''PeerJ''. 2017; '''5''': e2928
Characterization of Metagenomes in Urban Aquatic Compartments Reveals High Prevalence of Clinically Relevant Antibiotic Resistance Genes in Wastewaters. Description: Ng, Charmaine, et al. Characterization of Metagenomes in Urban Aquatic Compartments Reveals High Prevalence of Clinically Relevant Antibiotic Resistance Genes in Wastewaters. ''Front Microbiol''. 2017; '''8''': 2200
Draft of Zucchini (Cucurbita pepo L.) Proteome: A Resource for Genetic and Genomic Studies. Description: Andolfo, Giuseppe, et al. Draft of Zucchini (Cucurbita pepo L.) Proteome: A Resource for Genetic and Genomic Studies. ''Front Genet''. 2017; '''8''': 181
Impact of maintenance immunosuppressive therapy on the fecal microbiome of renal transplant recipients: Comparison between an everolimus- and a standard tacrolimus-based regimen. Description: Zaza, Gianluigi, et al. Impact of maintenance immunosuppressive therapy on the fecal microbiome of renal transplant recipients: Comparison between an everolimus- and a standard tacrolimus-based regimen. ''PLoS One''. 2017; '''12''' (5):e0178228
Metagenomic and metatranscriptomic analysis of saliva reveals disease-associated microbiota in patients with periodontitis and dental caries. Description: Belstrom, Daniel, et al. Metagenomic and metatranscriptomic analysis of saliva reveals disease-associated microbiota in patients with periodontitis and dental caries. ''NPJ Biofilms Microbiomes''. 2017; '''3''': 23
Metaproteogenomics Reveals Taxonomic and Functional Changes between Cecal and Fecal Microbiota in Mouse. Description: Tanca, Alessandro, et al. Metaproteogenomics Reveals Taxonomic and Functional Changes between Cecal and Fecal Microbiota in Mouse. ''Front Microbiol''. 2017; '''8''': 391
Metatranscriptomics Reveals the Active Bacterial and Eukaryotic Fibrolytic Communities in the Rumen of Dairy Cow Fed a Mixed Diet. Description: Comtet-Marre, Sophie, et al. Metatranscriptomics Reveals the Active Bacterial and Eukaryotic Fibrolytic Communities in the Rumen of Dairy Cow Fed a Mixed Diet. ''Front Microbiol''. 2017; '''8''': 67
Microbial Community Composition and Functional Capacity in a Terrestrial Ferruginous, Sulfate-Depleted Mud Volcano. Description: Tu, Tzu-Hsuan, et al. Microbial Community Composition and Functional Capacity in a Terrestrial Ferruginous, Sulfate-Depleted Mud Volcano. ''Front Microbiol''. 2017; '''8''': 2137
Neurophysiological evidence of preserved connectivity in tuber tissue. Description: Kaye, H L, et al. Neurophysiological evidence of preserved connectivity in tuber tissue. ''Epilepsy Behav Case Rep''. 2017; '''7''': 64-68
On the core bacterial flora of Ixodes persulcatus (Taiga tick). Description: Sui, Shuo, et al. On the core bacterial flora of Ixodes persulcatus (Taiga tick). ''PLoS One''. 2017; '''12''' (7):e0180150
PanWeb: A web interface for pan-genomic analysis. Description: Pantoja, Yan, et al. PanWeb: A web interface for pan-genomic analysis. ''PLoS One''. 2017; '''12''' (5):e0178154
Single primer isothermal amplification (SPIA) combined with next generation sequencing provides complete bovine coronavirus genome coverage and higher sequence depth compared to sequence-independent single primer amplification (SISPA). Description: Myrmel, Mette, et al. Single primer isothermal amplification (SPIA) combined with next generation sequencing provides complete bovine coronavirus genome coverage and higher sequence depth compared to sequence-independent single primer amplification (SISPA). ''PLoS One''. 2017; '''12''' (11):e0187780
Structure and Function of the Fecal Microbiota in Diarrheic Neonatal Piglets. Description: Yang, Qiaoli, et al. Structure and Function of the Fecal Microbiota in Diarrheic Neonatal Piglets. ''Front Microbiol''. 2017; '''8''': 502
Taxonomic differences of gut microbiomes drive cellulolytic enzymatic potential within hind-gut fermenting mammals. Description: Finlayson-Trick, Emma C L, et al. Taxonomic differences of gut microbiomes drive cellulolytic enzymatic potential within hind-gut fermenting mammals. ''PLoS One''. 2017; '''12''' (12):e0189404
Unraveling Core Functional Microbiota in Traditional Solid-State Fermentation by High-Throughput Amplicons and Metatranscriptomics Sequencing. Description: Song, Zhewei, et al. Unraveling Core Functional Microbiota in Traditional Solid-State Fermentation by High-Throughput Amplicons and Metatranscriptomics Sequencing. ''Front Microbiol''. 2017; '''8''': 1294
An optimistic protein assembly from sequence reads salvaged an uncharacterized segment of mouse picobirnavirus. Description: Gonzalez, Gabriel, et al. An optimistic protein assembly from sequence reads salvaged an uncharacterized segment of mouse picobirnavirus. ''Sci Rep''. 2017 Jan 10; '''7''': 40447
Fast and simple protein-alignment-guided assembly of orthologous gene families from microbiome sequencing reads. Description: Huson, Daniel H, et al. Fast and simple protein-alignment-guided assembly of orthologous gene families from microbiome sequencing reads. ''Microbiome''. 2017 Jan 25; '''5''' (1):11
Candidate Brocadiales dominates C, N and S cycling in anoxic groundwater of a pristine limestone-fracture aquifer. Description: Starke, Robert, et al. Candidate Brocadiales dominates C, N and S cycling in anoxic groundwater of a pristine limestone-fracture aquifer. ''J Proteomics''. 2017 Jan 30; '''152''': 153-160
Gut microbiota dysbiosis contributes to the development of hypertension. Description: Li, Jing, et al. Gut microbiota dysbiosis contributes to the development of hypertension. ''Microbiome''. 2017 Feb 1; '''5''' (1):14
Blubber transcriptome response to acute stress axis activation involves transient changes in adipogenesis and lipolysis in a fasting-adapted marine mammal. Description: Khudyakov, J I, et al. Blubber transcriptome response to acute stress axis activation involves transient changes in adipogenesis and lipolysis in a fasting-adapted marine mammal. ''Sci Rep''. 2017 Feb 10; '''7''': 42110
ROCker: accurate detection and quantification of target genes in short-read metagenomic data sets by modeling sliding-window bitscores. Description: Orellana, Luis H, et al. ROCker: accurate detection and quantification of target genes in short-read metagenomic data sets by modeling sliding-window bitscores. ''Nucleic Acids Res''. 2017 Feb 17; '''45''' (3):e14
k-SLAM: accurate and ultra-fast taxonomic classification and gene identification for large metagenomic data sets. Description: Ainsworth, David, et al. k-SLAM: accurate and ultra-fast taxonomic classification and gene identification for large metagenomic data sets. ''Nucleic Acids Res''. 2017 Feb 28; '''45''' (4):1649-1656
Candidate new rotavirus species in Schreiber's bats, Serbia. Description: Banyai, Krisztian, et al. Candidate new rotavirus species in Schreiber's bats, Serbia. ''Infect Genet Evol''. 2017 Mar; '''48''': 19-26
The blood DNA virome in 8,000 humans. Description: Moustafa, Ahmed, et al. The blood DNA virome in 8,000 humans. ''PLoS Pathog''. 2017 Mar; '''13''' (3):e1006292
Co-circulation of West Nile virus and distinct insect-specific flaviviruses in Turkey. Description: Ergunay, Koray, et al. Co-circulation of West Nile virus and distinct insect-specific flaviviruses in Turkey. ''Parasit Vectors''. 2017 Mar 20; '''10''' (1):149
A Series of Robust Copper-Based Triazolyl Isophthalate MOFs: Impact of Linker Functionalization on Gas Sorption and Catalytic Activity dagger. Description: Junghans, Ulrike, et al. A Series of Robust Copper-Based Triazolyl Isophthalate MOFs: Impact of Linker Functionalization on Gas Sorption and Catalytic Activity dagger. ''Materials (Basel)''. 2017 Mar 24; '''10''' (4):
Metagenomic profiling of gut microbial communities in both wild and artificially reared Bar-headed goose (Anser indicus). Description: Wang, Wen, et al. Metagenomic profiling of gut microbial communities in both wild and artificially reared Bar-headed goose (Anser indicus). ''Microbiologyopen''. 2017 Apr; '''6''' (2):
Functional implications of microbial and viral gut metagenome changes in early stage L-DOPA-naive Parkinson's disease patients. Description: Bedarf, J R, et al. Functional implications of microbial and viral gut metagenome changes in early stage L-DOPA-naive Parkinson's disease patients. ''Genome Med''. 2017 Apr 28; '''9''' (1):39
Comparative analysis of metagenomes of Italian top soil improvers. Description: Gigliucci, Federica, et al. Comparative analysis of metagenomes of Italian top soil improvers. ''Environ Res''. 2017 May; '''155''': 108-115
Diversity and functions of the sheep faecal microbiota: a multi-omic characterization. Description: Tanca, Alessandro, et al. Diversity and functions of the sheep faecal microbiota: a multi-omic characterization. ''Microb Biotechnol''. 2017 May; '''10''' (3):541-554
Metagenomic discovery of polybrominated diphenyl ether biosynthesis by marine sponges. Description: Agarwal, Vinayak, et al. Metagenomic discovery of polybrominated diphenyl ether biosynthesis by marine sponges. ''Nat Chem Biol''. 2017 May; '''13''' (5):537-543
Novel highly divergent sapoviruses detected by metagenomics analysis in straw-colored fruit bats in Cameroon. Description: Yinda, Claude Kwe, et al. Novel highly divergent sapoviruses detected by metagenomics analysis in straw-colored fruit bats in Cameroon. ''Emerg Microbes Infect''. 2017 May 24; '''6''' (5):e38
GLADIATOR: a global approach for elucidating disease modules. Description: Silberberg, Yael, et al. GLADIATOR: a global approach for elucidating disease modules. ''Genome Med''. 2017 May 26; '''9''' (1):48
Detecting similar binding pockets to enable systems polypharmacology. Description: Duran-Frigola, Miquel, et al. Detecting similar binding pockets to enable systems polypharmacology. ''PLoS Comput Biol''. 2017 Jun; '''13''' (6):e1005522
Viral gut metagenomics of sympatric wild and domestic canids, and monitoring of viruses: Insights from an endangered wolf population. Description: Conceicao-Neto, Nadia, et al. Viral gut metagenomics of sympatric wild and domestic canids, and monitoring of viruses: Insights from an endangered wolf population. ''Ecol Evol''. 2017 Jun; '''7''' (12):4135-4146
Soil biochar amendment affects the diversity of nosZ transcripts: Implications for N2O formation. Description: Harter, Johannes, et al. Soil biochar amendment affects the diversity of nosZ transcripts: Implications for N2O formation. ''Sci Rep''. 2017 Jun 13; '''7''' (1):3338
Characterization of Legionella Species from Watersheds in British Columbia, Canada. Description: Peabody, Michael A, et al. Characterization of Legionella Species from Watersheds in British Columbia, Canada. ''mSphere''. 2017 Jul-Aug; '''2''' (4):
Comparative genomics of the tardigrades Hypsibius dujardini and Ramazzottius varieornatus. Description: Yoshida, Yuki, et al. Comparative genomics of the tardigrades Hypsibius dujardini and Ramazzottius varieornatus. ''PLoS Biol''. 2017 Jul; '''15''' (7):e2002266
Deep Sequencing of RNA from Blood and Oral Swab Samples Reveals the Presence of Nucleic Acid from a Number of Pathogens in Patients with Acute Ebola Virus Disease and Is Consistent with Bacterial Translocation across the Gut. Description: Carroll, Miles W, et al. Deep Sequencing of RNA from Blood and Oral Swab Samples Reveals the Presence of Nucleic Acid from a Number of Pathogens in Patients with Acute Ebola Virus Disease and Is Consistent with Bacterial Translocation across the Gut. ''mSphere''. 2017 Jul-Aug; '''2''' (4):
Identification of an enterovirus recombinant with a torovirus-like gene insertion during a diarrhea outbreak in fattening pigs. Description: Conceicao-Neto, Nadia, et al. Identification of an enterovirus recombinant with a torovirus-like gene insertion during a diarrhea outbreak in fattening pigs. ''Virus Evol''. 2017 Jul; '''3''' (2):vex024
'ARMAN' archaea depend on association with euryarchaeal host in culture and in situ. Description: Golyshina, Olga V, et al. 'ARMAN' archaea depend on association with euryarchaeal host in culture and in situ. ''Nat Commun''. 2017 Jul 5; '''8''' (1):60
Marine viruses discovered via metagenomics shed light on viral strategies throughout the oceans. Description: Coutinho, Felipe H, et al. Marine viruses discovered via metagenomics shed light on viral strategies throughout the oceans. ''Nat Commun''. 2017 Jul 5; '''8''': 15955
Generic amplification and next generation sequencing reveal Crimean-Congo hemorrhagic fever virus AP92-like strain and distinct tick phleboviruses in Anatolia, Turkey. Description: Dincer, Ender, et al. Generic amplification and next generation sequencing reveal Crimean-Congo hemorrhagic fever virus AP92-like strain and distinct tick phleboviruses in Anatolia, Turkey. ''Parasit Vectors''. 2017 Jul 14; '''10''' (1):335
Potential and active functions in the gut microbiota of a healthy human cohort. Description: Tanca, Alessandro, et al. Potential and active functions in the gut microbiota of a healthy human cohort. ''Microbiome''. 2017 Jul 14; '''5''' (1):79
Factors affecting interactome-based prediction of human genes associated with clinical signs. Description: Gonzalez-Perez, Sara, et al. Factors affecting interactome-based prediction of human genes associated with clinical signs. ''BMC Bioinformatics''. 2017 Jul 17; '''18''' (1):340
Whole metagenome profiles of particulates collected from the International Space Station. Description: Be, Nicholas A, et al. Whole metagenome profiles of particulates collected from the International Space Station. ''Microbiome''. 2017 Jul 17; '''5''' (1):81
Deciphering functional diversification within the lichen microbiota by meta-omics. Description: Cernava, Tomislav, et al. Deciphering functional diversification within the lichen microbiota by meta-omics. ''Microbiome''. 2017 Jul 19; '''5''' (1):82
Environmental drivers of viral community composition in Antarctic soils identified by viromics. Description: Adriaenssens, Evelien M, et al. Environmental drivers of viral community composition in Antarctic soils identified by viromics. ''Microbiome''. 2017 Jul 19; '''5''' (1):83
Soil nutritional status and biogeography influence rhizosphere microbial communities associated with the invasive tree Acacia dealbata. Description: Kamutando, Casper N, et al. Soil nutritional status and biogeography influence rhizosphere microbial communities associated with the invasive tree Acacia dealbata. ''Sci Rep''. 2017 Jul 26; '''7''' (1):6472
Huanglongbing impairs the rhizosphere-to-rhizoplane enrichment process of the citrus root-associated microbiome. Description: Zhang, Yunzeng, et al. Huanglongbing impairs the rhizosphere-to-rhizoplane enrichment process of the citrus root-associated microbiome. ''Microbiome''. 2017 Aug 10; '''5''' (1):97
De novo transcriptome assembly for the spiny mouse (Acomys cahirinus). Description: Mamrot, Jared, et al. De novo transcriptome assembly for the spiny mouse (Acomys cahirinus). ''Sci Rep''. 2017 Aug 21; '''7''' (1):8996
Epibionts dominate metabolic functional potential of Trichodesmium colonies from the oligotrophic ocean. Description: Frischkorn, Kyle R, et al. Epibionts dominate metabolic functional potential of Trichodesmium colonies from the oligotrophic ocean. ''ISME J''. 2017 Sep; '''11''' (9):2090-2101
Genome diversity of marine phages recovered from Mediterranean metagenomes: Size matters. Description: Lopez-Perez, Mario, et al. Genome diversity of marine phages recovered from Mediterranean metagenomes: Size matters. ''PLoS Genet''. 2017 Sep; '''13''' (9):e1007018
Virioplankton Assemblage Structure in the Lower River and Ocean Continuum of the Amazon. Description: Silva, Bruno S de O, et al. Virioplankton Assemblage Structure in the Lower River and Ocean Continuum of the Amazon. ''mSphere''. 2017 Sep-Oct; '''2''' (5):
Isolation and characterization of the fall Chinook aquareovirus. Description: Makhsous, Negar, et al. Isolation and characterization of the fall Chinook aquareovirus. ''Virol J''. 2017 Sep 5; '''14''' (1):170
Perilipin-2 modulates dietary fat-induced microbial global gene expression profiles in the mouse intestine. Description: Xiong, Xuejian, et al. Perilipin-2 modulates dietary fat-induced microbial global gene expression profiles in the mouse intestine. ''Microbiome''. 2017 Sep 6; '''5''' (1):117
More than 2500 years of oil exposure shape sediment microbiomes with the potential for syntrophic degradation of hydrocarbons linked to methanogenesis. Description: Michas, Antonios, et al. More than 2500 years of oil exposure shape sediment microbiomes with the potential for syntrophic degradation of hydrocarbons linked to methanogenesis. ''Microbiome''. 2017 Sep 11; '''5''' (1):118
Comprehensive benchmarking and ensemble approaches for metagenomic classifiers. Description: McIntyre, Alexa B R, et al. Comprehensive benchmarking and ensemble approaches for metagenomic classifiers. ''Genome Biol''. 2017 Sep 21; '''18''' (1):182
Functional association prediction by community profiling. Description: Jiao, Dazhi, et al. Functional association prediction by community profiling. ''Methods''. 2017 Oct 1; '''129''': 8-17
Microbial survival strategies in ancient permafrost: insights from metagenomics. Description: Mackelprang, Rachel, et al. Microbial survival strategies in ancient permafrost: insights from metagenomics. ''ISME J''. 2017 Oct; '''11''' (10):2305-2318
The All-Rounder Sodalis: A New Bacteriome-Associated Endosymbiont of the Lygaeoid Bug Henestaris halophilus (Heteroptera: Henestarinae) and a Critical Examination of Its Evolution. Description: Santos-Garcia, Diego, et al. The All-Rounder Sodalis: A New Bacteriome-Associated Endosymbiont of the Lygaeoid Bug Henestaris halophilus (Heteroptera: Henestarinae) and a Critical Examination of Its Evolution. ''Genome Biol Evol''. 2017 Oct 1; '''9''' (10):2893-2910
Ni(II) Complexes with Schiff Base Ligands: Preparation, Characterization, DNA/Protein Interaction and Cytotoxicity Studies. Description: Yu, Hui, et al. Ni(II) Complexes with Schiff Base Ligands: Preparation, Characterization, DNA/Protein Interaction and Cytotoxicity Studies. ''Molecules''. 2017 Oct 24; '''22''' (10):
Significance of measurement of serum trough level and anti-drug antibody of adalimumab as personalised pharmacokinetics in patients with Crohn's disease: a subanalysis of the DIAMOND trial. Description: Nakase, H, et al. Significance of measurement of serum trough level and anti-drug antibody of adalimumab as personalised pharmacokinetics in patients with Crohn's disease: a subanalysis of the DIAMOND trial. ''Aliment Pharmacol Ther''. 2017 Nov; '''46''' (9):873-882
Total Lipopolysaccharide from the Human Gut Microbiome Silences Toll-Like Receptor Signaling. Description: d'Hennezel, Eva, et al. Total Lipopolysaccharide from the Human Gut Microbiome Silences Toll-Like Receptor Signaling. ''mSystems''. 2017 Nov-Dec; '''2''' (6):
Optimisation of 16S rRNA gut microbiota profiling of extremely low birth weight infants. Description: Alcon-Giner, Cristina, et al. Optimisation of 16S rRNA gut microbiota profiling of extremely low birth weight infants. ''BMC Genomics''. 2017 Nov 2; '''18''' (1):841
Sequencing genomes from mixed DNA samples - evaluating the metagenome skimming approach in lichenized fungi. Description: Meiser, Anjuli, et al. Sequencing genomes from mixed DNA samples - evaluating the metagenome skimming approach in lichenized fungi. ''Sci Rep''. 2017 Nov 2; '''7''' (1):14881
The gut mycobiome of the Human Microbiome Project healthy cohort. Description: Nash, Andrea K, et al. The gut mycobiome of the Human Microbiome Project healthy cohort. ''Microbiome''. 2017 Nov 25; '''5''' (1):153
Unique signalling connectivity of FGFR3-TACC3 oncoprotein revealed by quantitative phosphoproteomics and differential network analysis. Description: Lombardi, Benedetta, et al. Unique signalling connectivity of FGFR3-TACC3 oncoprotein revealed by quantitative phosphoproteomics and differential network analysis. ''Oncotarget''. 2017 Nov 28; '''8''' (61):102898-102911
Identification of a Lineage D Betacoronavirus in Cave Nectar Bats (Eonycteris spelaea) in Singapore and an Overview of Lineage D Reservoir Ecology in SE Asian Bats. Description: Mendenhall, I H, et al. Identification of a Lineage D Betacoronavirus in Cave Nectar Bats (Eonycteris spelaea) in Singapore and an Overview of Lineage D Reservoir Ecology in SE Asian Bats. ''Transbound Emerg Dis''. 2017 Dec; '''64''' (6):1790-1800
Legume crop rotation suppressed nitrifying microbial community in a sugarcane cropping soil. Description: Paungfoo-Lonhienne, Chanyarat, et al. Legume crop rotation suppressed nitrifying microbial community in a sugarcane cropping soil. ''Sci Rep''. 2017 Dec 1; '''7''' (1):16707
Multi-Omic Biogeography of the Gastrointestinal Microbiota of a Pre-Weaned Lamb. Description: Palomba, Antonio, et al. Multi-Omic Biogeography of the Gastrointestinal Microbiota of a Pre-Weaned Lamb. ''Proteomes''. 2017 Dec 18; '''5''' (4):
A Large-Scale Comparative Metagenomic Study Reveals the Functional Interactions in Six Bloom-Forming Microcystis-Epibiont Communities. Description: Li, Qi, et al. A Large-Scale Comparative Metagenomic Study Reveals the Functional Interactions in Six Bloom-Forming Microcystis-Epibiont Communities. ''Front Microbiol''. 2018; '''9''': 746
A metatranscriptomic analysis of diseased social wasps (Vespula vulgaris) for pathogens, with an experimental infection of larvae and nests. Description: Quinn, Oliver, et al. A metatranscriptomic analysis of diseased social wasps (Vespula vulgaris) for pathogens, with an experimental infection of larvae and nests. ''PLoS One''. 2018; '''13''' (12):e0209589
Biodiversity of cyanobacteria and other aquatic microorganisms across a freshwater to brackish water gradient determined by shotgun metagenomic sequencing analysis in the San Francisco Estuary, USA. Description: Kurobe, Tomofumi, et al. Biodiversity of cyanobacteria and other aquatic microorganisms across a freshwater to brackish water gradient determined by shotgun metagenomic sequencing analysis in the San Francisco Estuary, USA. ''PLoS One''. 2018; '''13''' (9):e0203953
Cameroonian fruit bats harbor divergent viruses, including rotavirus H, bastroviruses, and picobirnaviruses using an alternative genetic code. Description: Yinda, Claude Kwe, et al. Cameroonian fruit bats harbor divergent viruses, including rotavirus H, bastroviruses, and picobirnaviruses using an alternative genetic code. ''Virus Evol''. 2018 Jan; '''4''' (1):vey008
Chronic Physical Disturbance Substantially Alters the Response of Biological Soil Crusts to a Wetting Pulse, as Characterized by Metatranscriptomic Sequencing. Description: Steven, Blaire, et al. Chronic Physical Disturbance Substantially Alters the Response of Biological Soil Crusts to a Wetting Pulse, as Characterized by Metatranscriptomic Sequencing. ''Front Microbiol''. 2018; '''9''': 2382
Comparative Genomics Highlights Symbiotic Capacities and High Metabolic Flexibility of the Marine Genus Pseudovibrio. Description: Versluis, Dennis, et al. Comparative Genomics Highlights Symbiotic Capacities and High Metabolic Flexibility of the Marine Genus Pseudovibrio. ''Genome Biol Evol''. 2018 Jan 1; '''10''' (1):125-142
Consensus assessment of the contamination level of publicly available cyanobacterial genomes. Description: Cornet, Luc, et al. Consensus assessment of the contamination level of publicly available cyanobacterial genomes. ''PLoS One''. 2018; '''13''' (7):e0200323
Enteric virome of Ethiopian children participating in a clean water intervention trial. Description: Altan, Eda, et al. Enteric virome of Ethiopian children participating in a clean water intervention trial. ''PLoS One''. 2018; '''13''' (8):e0202054
Genetic repertoires of anaerobic microbiomes driving generation of biogas. Description: Grohmann, Anja, et al. Genetic repertoires of anaerobic microbiomes driving generation of biogas. ''Biotechnol Biofuels''. 2018; '''11''': 255
Genome-centric metatranscriptomes and ecological roles of the active microbial populations during cellulosic biomass anaerobic digestion. Description: Jia, Yangyang, et al. Genome-centric metatranscriptomes and ecological roles of the active microbial populations during cellulosic biomass anaerobic digestion. ''Biotechnol Biofuels''. 2018; '''11''': 117
Genome-Wide Comparison of Carbohydrate-Active Enzymes (CAZymes) Repertoire of Flammulina ononidis. Description: Park, Young-Jin, et al. Genome-Wide Comparison of Carbohydrate-Active Enzymes (CAZymes) Repertoire of Flammulina ononidis. ''Mycobiology''. 2018; '''46''' (4):349-360
Global transcriptome analysis of the aphelid Paraphelidium tribonemae supports the phagotrophic origin of fungi. Description: Torruella, Guifre, et al. Global transcriptome analysis of the aphelid Paraphelidium tribonemae supports the phagotrophic origin of fungi. ''Commun Biol''. 2018; '''1''': 231
Identification of a Torque Teno Mini Virus (TTMV) in Hodgkin's Lymphoma Patients. Description: Pan, Shaokun, et al. Identification of a Torque Teno Mini Virus (TTMV) in Hodgkin's Lymphoma Patients. ''Front Microbiol''. 2018; '''9''': 1680
Investigation of the viral and bacterial microbiota in intestinal samples from mink (Neovison vison) with pre-weaning diarrhea syndrome using next generation sequencing. Description: Birch, Julie Melsted, et al. Investigation of the viral and bacterial microbiota in intestinal samples from mink (Neovison vison) with pre-weaning diarrhea syndrome using next generation sequencing. ''PLoS One''. 2018; '''13''' (10):e0205890
Magnetic and luminescent coordination networks based on imidazolium salts and lanthanides for sensitive ratiometric thermometry. Description: Farger, Pierre, et al. Magnetic and luminescent coordination networks based on imidazolium salts and lanthanides for sensitive ratiometric thermometry. ''Beilstein J Nanotechnol''. 2018; '''9''': 2775-2787
Metabolic marker gene mining provides insight in global mcrA diversity and, coupled with targeted genome reconstruction, sheds further light on metabolic potential of the Methanomassiliicoccales. Description: Speth, Daan R, et al. Metabolic marker gene mining provides insight in global mcrA diversity and, coupled with targeted genome reconstruction, sheds further light on metabolic potential of the Methanomassiliicoccales. ''PeerJ''. 2018; '''6''': e5614
Metagenomic Characterization of the Human Intestinal Microbiota in Fecal Samples from STEC-Infected Patients. Description: Gigliucci, Federica, et al. Metagenomic Characterization of the Human Intestinal Microbiota in Fecal Samples from STEC-Infected Patients. ''Front Cell Infect Microbiol''. 2018; '''8''': 25
Metagenomics Investigation of Agarlytic Genes and Genomes in Mangrove Sediments in China: A Potential Repertory for Carbohydrate-Active Enzymes. Description: Qu, Wu, et al. Metagenomics Investigation of Agarlytic Genes and Genomes in Mangrove Sediments in China: A Potential Repertory for Carbohydrate-Active Enzymes. ''Front Microbiol''. 2018; '''9''': 1864
Microbial community and functions associated with digestion of algal polysaccharides in the visceral tract of Haliotis discus hannai: Insights from metagenome and metatranscriptome analysis. Description: Nam, Bo-Hye, et al. Microbial community and functions associated with digestion of algal polysaccharides in the visceral tract of Haliotis discus hannai: Insights from metagenome and metatranscriptome analysis. ''PLoS One''. 2018; '''13''' (10):e0205594
Microbial Community and Metabolic Activity in Thiocyanate Degrading Low Temperature Microbial Fuel Cells. Description: Ni, Gaofeng, et al. Microbial Community and Metabolic Activity in Thiocyanate Degrading Low Temperature Microbial Fuel Cells. ''Front Microbiol''. 2018; '''9''': 2308
Modulating mimicry: Exploring the roles of inhibitory control and social understanding in 5-year-olds' behavioral mimicry. Description: van Schaik, Johanna E, et al. Modulating mimicry: Exploring the roles of inhibitory control and social understanding in 5-year-olds' behavioral mimicry. ''PLoS One''. 2018; '''13''' (3):e0194102
Nitrosospira sp. Govern Nitrous Oxide Emissions in a Tropical Soil Amended With Residues of Bioenergy Crop. Description: Lourenco, Kesia S, et al. Nitrosospira sp. Govern Nitrous Oxide Emissions in a Tropical Soil Amended With Residues of Bioenergy Crop. ''Front Microbiol''. 2018; '''9''': 674
Occurrence of Harmful Cyanobacteria in Drinking Water from a Severely Drought-Impacted Semi-arid Region. Description: Walter, Juline M, et al. Occurrence of Harmful Cyanobacteria in Drinking Water from a Severely Drought-Impacted Semi-arid Region. ''Front Microbiol''. 2018; '''9''': 176
Phylogenomic Analysis of the Gammaproteobacterial Methanotrophs (Order Methylococcales) Calls for the Reclassification of Members at the Genus and Species Levels. Description: Orata, Fabini D, et al. Phylogenomic Analysis of the Gammaproteobacterial Methanotrophs (Order Methylococcales) Calls for the Reclassification of Members at the Genus and Species Levels. ''Front Microbiol''. 2018; '''9''': 3162
Physiological and Metagenomic Characterizations of the Synergistic Relationships between Ammonia- and Nitrite-Oxidizing Bacteria in Freshwater Nitrification. Description: Cai, Mingwei, et al. Physiological and Metagenomic Characterizations of the Synergistic Relationships between Ammonia- and Nitrite-Oxidizing Bacteria in Freshwater Nitrification. ''Front Microbiol''. 2018; '''9''': 280
Psychometric Properties of the Difficulties in Emotion Regulation Scale (DERS) and Its Short Forms in Adults With Emotional Disorders. Description: Hallion, Lauren S, et al. Psychometric Properties of the Difficulties in Emotion Regulation Scale (DERS) and Its Short Forms in Adults With Emotional Disorders. ''Front Psychol''. 2018; '''9''': 539
Study of the Metatranscriptome of Eight Social and Solitary Wild Bee Species Reveals Novel Viruses and Bee Parasites. Description: Schoonvaere, Karel, et al. Study of the Metatranscriptome of Eight Social and Solitary Wild Bee Species Reveals Novel Viruses and Bee Parasites. ''Front Microbiol''. 2018; '''9''': 177
Taxon-Function Decoupling as an Adaptive Signature of Lake Microbial Metacommunities Under a Chronic Polymetallic Pollution Gradient. Description: Cheaib, Bachar, et al. Taxon-Function Decoupling as an Adaptive Signature of Lake Microbial Metacommunities Under a Chronic Polymetallic Pollution Gradient. ''Front Microbiol''. 2018; '''9''': 869
The gill-associated microbiome is the main source of wood plant polysaccharide hydrolases and secondary metabolite gene clusters in the mangrove shipworm Neoteredo reynei. Description: Brito, Thais L, et al. The gill-associated microbiome is the main source of wood plant polysaccharide hydrolases and secondary metabolite gene clusters in the mangrove shipworm Neoteredo reynei. ''PLoS One''. 2018; '''13''' (11):e0200437
The Oxidative Metabolism of Fossil Hydrocarbons and Sulfide Minerals by the Lithobiontic Microbial Community Inhabiting Deep Subterrestrial Kupferschiefer Black Shale. Description: Wlodarczyk, Agnieszka, et al. The Oxidative Metabolism of Fossil Hydrocarbons and Sulfide Minerals by the Lithobiontic Microbial Community Inhabiting Deep Subterrestrial Kupferschiefer Black Shale. ''Front Microbiol''. 2018; '''9''': 972
To B or Not to B: Comparative Genomics Suggests Arsenophonus as a Source of B Vitamins in Whiteflies. Description: Santos-Garcia, Diego, et al. To B or Not to B: Comparative Genomics Suggests Arsenophonus as a Source of B Vitamins in Whiteflies. ''Front Microbiol''. 2018; '''9''': 2254
Variability in metagenomic samples from the Puget Sound: Relationship to temporal and anthropogenic impacts. Description: Wallace, James C, et al. Variability in metagenomic samples from the Puget Sound: Relationship to temporal and anthropogenic impacts. ''PLoS One''. 2018; '''13''' (2):e0192412
PLAZA 4.0: an integrative resource for functional, evolutionary and comparative plant genomics. Description: Van Bel, Michiel, et al. PLAZA 4.0: an integrative resource for functional, evolutionary and comparative plant genomics. ''Nucleic Acids Res''. 2018 Jan 4; '''46''' (D1):D1190-D1196
Metagenomic and metabolomic analyses unveil dysbiosis of gut microbiota in chronic heart failure patients. Description: Cui, Xiao, et al. Metagenomic and metabolomic analyses unveil dysbiosis of gut microbiota in chronic heart failure patients. ''Sci Rep''. 2018 Jan 12; '''8''' (1):635
A global ocean atlas of eukaryotic genes. Description: Carradec, Quentin, et al. A global ocean atlas of eukaryotic genes. ''Nat Commun''. 2018 Jan 25; '''9''' (1):373
Age and fecal microbial strain-specific differences in patients with spondyloarthritis. Description: Stoll, Matthew L, et al. Age and fecal microbial strain-specific differences in patients with spondyloarthritis. ''Arthritis Res Ther''. 2018 Jan 30; '''20''' (1):14
A model species for agricultural pest genomics: the genome of the Colorado potato beetle, Leptinotarsa decemlineata (Coleoptera: Chrysomelidae). Description: Schoville, Sean D, et al. A model species for agricultural pest genomics: the genome of the Colorado potato beetle, Leptinotarsa decemlineata (Coleoptera: Chrysomelidae). ''Sci Rep''. 2018 Jan 31; '''8''' (1):1931
Metagenomic insights into zooplankton-associated bacterial communities. Description: De Corte, Daniele, et al. Metagenomic insights into zooplankton-associated bacterial communities. ''Environ Microbiol''. 2018 Feb; '''20''' (2):492-505
Metagenomic sequencing of environmental DNA reveals marine faunal assemblages from the West Antarctic Peninsula. Description: Cowart, Dominique A, et al. Metagenomic sequencing of environmental DNA reveals marine faunal assemblages from the West Antarctic Peninsula. ''Mar Genomics''. 2018 Feb; '''37''': 148-160
Whole metagenome sequencing reveals links between mosquito microbiota and insecticide resistance in malaria vectors. Description: Dada, Nsa, et al. Whole metagenome sequencing reveals links between mosquito microbiota and insecticide resistance in malaria vectors. ''Sci Rep''. 2018 Feb 1; '''8''' (1):2084
Effects of timber harvesting on the genetic potential for carbon and nitrogen cycling in five North American forest ecozones. Description: Cardenas, Erick, et al. Effects of timber harvesting on the genetic potential for carbon and nitrogen cycling in five North American forest ecozones. ''Sci Rep''. 2018 Feb 16; '''8''' (1):3142
High Prevalence of Quorum-Sensing and Quorum-Quenching Activity among Cultivable Bacteria and Metagenomic Sequences in the Mediterranean Sea. Description: Muras, Andrea, et al. High Prevalence of Quorum-Sensing and Quorum-Quenching Activity among Cultivable Bacteria and Metagenomic Sequences in the Mediterranean Sea. ''Genes (Basel)''. 2018 Feb 16; '''9''' (2):
A reservoir of 'historical' antibiotic resistance genes in remote pristine Antarctic soils. Description: Van Goethem, Marc W, et al. A reservoir of 'historical' antibiotic resistance genes in remote pristine Antarctic soils. ''Microbiome''. 2018 Feb 23; '''6''' (1):40
Functional sequencing read annotation for high precision microbiome analysis. Description: Zhu, Chengsheng, et al. Functional sequencing read annotation for high precision microbiome analysis. ''Nucleic Acids Res''. 2018 Feb 28; '''46''' (4):e23
Metabolic versatility of small archaea Micrarchaeota and Parvarchaeota. Description: Chen, Lin-Xing, et al. Metabolic versatility of small archaea Micrarchaeota and Parvarchaeota. ''ISME J''. 2018 Mar; '''12''' (3):756-775
Synthesis, structural determination and antimicrobial evaluation of two novel Co(II) and Zn(II) halogenometallates as efficient catalysts for the acetalization reaction of aldehydes. Description: Salah, Assila Maatar Ben, et al. Synthesis, structural determination and antimicrobial evaluation of two novel Co(II) and Zn(II) halogenometallates as efficient catalysts for the acetalization reaction of aldehydes. ''Chem Cent J''. 2018 Mar 1; '''12''' (1):24
Transcriptome analysis of Pinus halepensis under drought stress and during recovery. Description: Fox, Hagar, et al. Transcriptome analysis of Pinus halepensis under drought stress and during recovery. ''Tree Physiol''. 2018 Mar 1; '''38''' (3):423-441
Mapping the virome in wild-caught Aedes aegypti from Cairns and Bangkok. Description: Zakrzewski, Martha, et al. Mapping the virome in wild-caught Aedes aegypti from Cairns and Bangkok. ''Sci Rep''. 2018 Mar 16; '''8''' (1):4690
Species classifier choice is a key consideration when analysing low-complexity food microbiome data. Description: Walsh, Aaron M, et al. Species classifier choice is a key consideration when analysing low-complexity food microbiome data. ''Microbiome''. 2018 Mar 20; '''6''' (1):50
Bipartite Network Analysis of Gene Sharings in the Microbial World. Description: Corel, Eduardo, et al. Bipartite Network Analysis of Gene Sharings in the Microbial World. ''Mol Biol Evol''. 2018 Apr 1; '''35''' (4):899-913
Fatal swine acute diarrhoea syndrome caused by an HKU2-related coronavirus of bat origin. Description: Zhou, Peng, et al. Fatal swine acute diarrhoea syndrome caused by an HKU2-related coronavirus of bat origin. ''Nature''. 2018 Apr; '''556''' (7700):255-258
Hologenomic adaptations underlying the evolution of sanguivory in the common vampire bat. Description: Zepeda Mendoza, M Lisandra, et al. Hologenomic adaptations underlying the evolution of sanguivory in the common vampire bat. ''Nat Ecol Evol''. 2018 Apr; '''2''' (4):659-668
Horizontal gene cluster transfer increased hallucinogenic mushroom diversity. Description: Reynolds, Hannah T, et al. Horizontal gene cluster transfer increased hallucinogenic mushroom diversity. ''Evol Lett''. 2018 Apr; '''2''' (2):88-101
Improving the annotation of the Heterorhabditis bacteriophora genome. Description: McLean, Florence, et al. Improving the annotation of the Heterorhabditis bacteriophora genome. ''Gigascience''. 2018 Apr 1; '''7''' (4):
Nanopore-induced host-guest charge transfer phenomena in a metal-organic framework. Description: Yamamoto, S, et al. Nanopore-induced host-guest charge transfer phenomena in a metal-organic framework. ''Chem Sci''. 2018 Apr 7; '''9''' (13):3282-3289
MEGAN-LR: new algorithms allow accurate binning and easy interactive exploration of metagenomic long reads and contigs. Description: Huson, Daniel H, et al. MEGAN-LR: new algorithms allow accurate binning and easy interactive exploration of metagenomic long reads and contigs. ''Biol Direct''. 2018 Apr 20; '''13''' (1):6
taxMaps: comprehensive and highly accurate taxonomic classification of short-read data in reasonable time. Description: Corvelo, Andre, et al. taxMaps: comprehensive and highly accurate taxonomic classification of short-read data in reasonable time. ''Genome Res''. 2018 May; '''28''' (5):751-758
The transcriptomic and epigenetic map of vascular quiescence in the continuous lung endothelium. Description: Schlereth, Katharina, et al. The transcriptomic and epigenetic map of vascular quiescence in the continuous lung endothelium. ''Elife''. 2018 May 11; '''7''':
Microbiome Dynamics in a Large Artificial Seawater Aquarium. Description: Patin, Nastassia V, et al. Microbiome Dynamics in a Large Artificial Seawater Aquarium. ''Appl Environ Microbiol''. 2018 May 15; '''84''' (10):
Genomic and ecological study of two distinctive freshwater bacteriophages infecting a Comamonadaceae bacterium. Description: Moon, Kira, et al. Genomic and ecological study of two distinctive freshwater bacteriophages infecting a Comamonadaceae bacterium. ''Sci Rep''. 2018 May 22; '''8''' (1):7989
Heterometallic Octanuclear Ni(II) 4Ln(III) 4 (Ln = Y, Gd, Tb, Dy, Ho, Er) Complexes Containing Ni(II) 2Ln(III) 2O4 Distorted Cubane Motifs: Synthesis, Structure, and Magnetic Properties. Description: Kalita, Pankaj, et al. Heterometallic Octanuclear Ni(II) 4Ln(III) 4 (Ln = Y, Gd, Tb, Dy, Ho, Er) Complexes Containing Ni(II) 2Ln(III) 2O4 Distorted Cubane Motifs: Synthesis, Structure, and Magnetic Properties. ''ACS Omega''. 2018 May 31; '''3''' (5):5202-5211
4-1BB expression on MAIT cells is associated with enhanced IFN-gamma production and depends on IL-2. Description: Jiang, Jing, et al. 4-1BB expression on MAIT cells is associated with enhanced IFN-gamma production and depends on IL-2. ''Cell Immunol''. 2018 Jun; '''328''': 58-69
A resource for sustainable management: De novo assembly and annotation of the liver transcriptome of the Atlantic chub mackerel, Scomber colias. Description: Machado, Andre M, et al. A resource for sustainable management: De novo assembly and annotation of the liver transcriptome of the Atlantic chub mackerel, Scomber colias. ''Data Brief''. 2018 Jun; '''18''': 276-284
GraftM: a tool for scalable, phylogenetically informed classification of genes within metagenomes. Description: Boyd, Joel A, et al. GraftM: a tool for scalable, phylogenetically informed classification of genes within metagenomes. ''Nucleic Acids Res''. 2018 Jun 1; '''46''' (10):e59
Parallel and Gradual Genome Erosion in the Blattabacterium Endosymbionts of Mastotermes darwiniensis and Cryptocercus Wood Roaches. Description: Kinjo, Yukihiro, et al. Parallel and Gradual Genome Erosion in the Blattabacterium Endosymbionts of Mastotermes darwiniensis and Cryptocercus Wood Roaches. ''Genome Biol Evol''. 2018 Jun 1; '''10''' (6):1622-1630
The impact of Staphylococcus aureus genomic variation on clinical phenotype of children with acute hematogenous osteomyelitis. Description: Collins, Angela, et al. The impact of Staphylococcus aureus genomic variation on clinical phenotype of children with acute hematogenous osteomyelitis. ''Heliyon''. 2018 Jun; '''4''' (6):e00674
A de novo approach to disentangle partner identity and function in holobiont systems. Description: Meng, Arnaud, et al. A de novo approach to disentangle partner identity and function in holobiont systems. ''Microbiome''. 2018 Jun 9; '''6''' (1):105
Investigating the viral ecology of global bee communities with high-throughput metagenomics. Description: Galbraith, David A, et al. Investigating the viral ecology of global bee communities with high-throughput metagenomics. ''Sci Rep''. 2018 Jun 11; '''8''' (1):8879
The Effect of Scandium Ternary Intergrain Precipitates in Al-Containing High-Entropy Alloys. Description: Riva, Sephira, et al. The Effect of Scandium Ternary Intergrain Precipitates in Al-Containing High-Entropy Alloys. ''Entropy (Basel)''. 2018 Jun 22; '''20''' (7):
Highly stable and porous porphyrin-based zirconium and hafnium phosphonates - electron crystallography as an important tool for structure elucidation. Description: Rhauderwiek, Timo, et al. Highly stable and porous porphyrin-based zirconium and hafnium phosphonates - electron crystallography as an important tool for structure elucidation. ''Chem Sci''. 2018 Jun 28; '''9''' (24):5467-5478
Clustering huge protein sequence sets in linear time. Description: Steinegger, Martin, et al. Clustering huge protein sequence sets in linear time. ''Nat Commun''. 2018 Jun 29; '''9''' (1):2542
Fern genomes elucidate land plant evolution and cyanobacterial symbioses. Description: Li, Fay-Wei, et al. Fern genomes elucidate land plant evolution and cyanobacterial symbioses. ''Nat Plants''. 2018 Jul; '''4''' (7):460-472
Holistic Assessment of Rumen Microbiome Dynamics through Quantitative Metatranscriptomics Reveals Multifunctional Redundancy during Key Steps of Anaerobic Feed Degradation. Description: Sollinger, Andrea, et al. Holistic Assessment of Rumen Microbiome Dynamics through Quantitative Metatranscriptomics Reveals Multifunctional Redundancy during Key Steps of Anaerobic Feed Degradation. ''mSystems''. 2018 Jul-Aug; '''3''' (4):
Metagenomic sequencing suggests a diversity of RNA interference-like responses to viruses across multicellular eukaryotes. Description: Waldron, Fergal M, et al. Metagenomic sequencing suggests a diversity of RNA interference-like responses to viruses across multicellular eukaryotes. ''PLoS Genet''. 2018 Jul; '''14''' (7):e1007533
Trichoderma harzianum MTCC 5179 impacts the population and functional dynamics of microbial community in the rhizosphere of black pepper (Piper nigrum L.). Description: Umadevi, Palaniyandi, et al. Trichoderma harzianum MTCC 5179 impacts the population and functional dynamics of microbial community in the rhizosphere of black pepper (Piper nigrum L.). ''Braz J Microbiol''. 2018 Jul - Sep; '''49''' (3):463-470
Fine metagenomic profile of the Mediterranean stratified and mixed water columns revealed by assembly and recruitment. Description: Haro-Moreno, Jose M, et al. Fine metagenomic profile of the Mediterranean stratified and mixed water columns revealed by assembly and recruitment. ''Microbiome''. 2018 Jul 10; '''6''' (1):128
Meta-proteomics of rumen microbiota indicates niche compartmentalisation and functional dominance in a limited number of metabolic pathways between abundant bacteria. Description: Hart, E H, et al. Meta-proteomics of rumen microbiota indicates niche compartmentalisation and functional dominance in a limited number of metabolic pathways between abundant bacteria. ''Sci Rep''. 2018 Jul 12; '''8''' (1):10504
Co-Infection Patterns in Individual Ixodes scapularis Ticks Reveal Associations between Viral, Eukaryotic and Bacterial Microorganisms. Description: Cross, Shaun T, et al. Co-Infection Patterns in Individual Ixodes scapularis Ticks Reveal Associations between Viral, Eukaryotic and Bacterial Microorganisms. ''Viruses''. 2018 Jul 22; '''10''' (7):
Expanding the Arterivirus Host Spectrum: Olivier's Shrew Virus 1, A Novel Arterivirus Discovered in African Giant Shrews. Description: Vanmechelen, Bert, et al. Expanding the Arterivirus Host Spectrum: Olivier's Shrew Virus 1, A Novel Arterivirus Discovered in African Giant Shrews. ''Sci Rep''. 2018 Jul 24; '''8''' (1):11171
Genomic and Biotechnological Characterization of the Heavy-Metal Resistant, Arsenic-Oxidizing Bacterium Ensifer sp. M14. Description: diCenzo, George C, et al. Genomic and Biotechnological Characterization of the Heavy-Metal Resistant, Arsenic-Oxidizing Bacterium Ensifer sp. M14. ''Genes (Basel)''. 2018 Jul 27; '''9''' (8):
BARM and BalticMicrobeDB, a reference metagenome and interface to meta-omic data for the Baltic Sea. Description: Alneberg, Johannes, et al. BARM and BalticMicrobeDB, a reference metagenome and interface to meta-omic data for the Baltic Sea. ''Sci Data''. 2018 Jul 31; '''5''': 180146
TOPAZ: asymmetric suffix array neighbourhood search for massive protein databases. Description: Medlar, Alan, et al. TOPAZ: asymmetric suffix array neighbourhood search for massive protein databases. ''BMC Bioinformatics''. 2018 Jul 31; '''19''' (1):278
Leveraging multiple transcriptome assembly methods for improved gene structure annotation. Description: Venturini, Luca, et al. Leveraging multiple transcriptome assembly methods for improved gene structure annotation. ''Gigascience''. 2018 Aug 1; '''7''' (8):
Changes in feeding habits promoted the differentiation of the composition and function of gut microbiotas between domestic dogs (Canis lupus familiaris) and gray wolves (Canis lupus). Description: Lyu, Tianshu, et al. Changes in feeding habits promoted the differentiation of the composition and function of gut microbiotas between domestic dogs (Canis lupus familiaris) and gray wolves (Canis lupus). ''AMB Express''. 2018 Aug 2; '''8''' (1):123
Gut microbiota, short chain fatty acids, and obesity across the epidemiologic transition: the METS-Microbiome study protocol. Description: Dugas, Lara R, et al. Gut microbiota, short chain fatty acids, and obesity across the epidemiologic transition: the METS-Microbiome study protocol. ''BMC Public Health''. 2018 Aug 6; '''18''' (1):978
Genome Sequencing and Carbohydrate-Active Enzyme (CAZyme) Repertoire of the White Rot Fungus Flammulina elastica. Description: Park, Young-Jin, et al. Genome Sequencing and Carbohydrate-Active Enzyme (CAZyme) Repertoire of the White Rot Fungus Flammulina elastica. ''Int J Mol Sci''. 2018 Aug 13; '''19''' (8):
Comparative Metagenomic Analysis of Rhizosphere Microbial Community Composition and Functional Potentials under Rehmannia glutinosa Consecutive Monoculture. Description: Wu, Linkun, et al. Comparative Metagenomic Analysis of Rhizosphere Microbial Community Composition and Functional Potentials under Rehmannia glutinosa Consecutive Monoculture. ''Int J Mol Sci''. 2018 Aug 14; '''19''' (8):
A Novel Eukaryotic Denitrification Pathway in Foraminifera. Description: Woehle, Christian, et al. A Novel Eukaryotic Denitrification Pathway in Foraminifera. ''Curr Biol''. 2018 Aug 20; '''28''' (16):2536-2543.e5
MetaBinG2: a fast and accurate metagenomic sequence classification system for samples with many unknown organisms. Description: Qiao, Yuyang, et al. MetaBinG2: a fast and accurate metagenomic sequence classification system for samples with many unknown organisms. ''Biol Direct''. 2018 Aug 22; '''13''' (1):15
Dysbiosis of maternal and neonatal microbiota associated with gestational diabetes mellitus. Description: Wang, Jinfeng, et al. Dysbiosis of maternal and neonatal microbiota associated with gestational diabetes mellitus. ''Gut''. 2018 Sep; '''67''' (9):1614-1625
Genetic diversity, infection prevalence, and possible transmission routes of Bartonella spp. in vampire bats. Description: Becker, Daniel J, et al. Genetic diversity, infection prevalence, and possible transmission routes of Bartonella spp. in vampire bats. ''PLoS Negl Trop Dis''. 2018 Sep; '''12''' (9):e0006786
Metagenomic assembly of new (sub)polar Cyanobacteria and their associated microbiome from non-axenic cultures. Description: Cornet, Luc, et al. Metagenomic assembly of new (sub)polar Cyanobacteria and their associated microbiome from non-axenic cultures. ''Microb Genom''. 2018 Sep; '''4''' (9):
Microbial Functional Responses to Cholesterol Catabolism in Denitrifying Sludge. Description: Wei, Sean Ting-Shyang, et al. Microbial Functional Responses to Cholesterol Catabolism in Denitrifying Sludge. ''mSystems''. 2018 Sep-Oct; '''3''' (5):
Pan-Parastagonospora Comparative Genome Analysis-Effector Prediction and Genome Evolution. Description: Syme, Robert A, et al. Pan-Parastagonospora Comparative Genome Analysis-Effector Prediction and Genome Evolution. ''Genome Biol Evol''. 2018 Sep 1; '''10''' (9):2443-2457
The genome of the golden apple snail Pomacea canaliculata provides insight into stress tolerance and invasive adaptation. Description: Liu, Conghui, et al. The genome of the golden apple snail Pomacea canaliculata provides insight into stress tolerance and invasive adaptation. ''Gigascience''. 2018 Sep 1; '''7''' (9):
Whole Genome Sequencing of the Pirarucu (Arapaima gigas) Supports Independent Emergence of Major Teleost Clades. Description: Vialle, Ricardo Assuncao, et al. Whole Genome Sequencing of the Pirarucu (Arapaima gigas) Supports Independent Emergence of Major Teleost Clades. ''Genome Biol Evol''. 2018 Sep 1; '''10''' (9):2366-2379
Fast automated reconstruction of genome-scale metabolic models for microbial species and communities. Description: Machado, Daniel, et al. Fast automated reconstruction of genome-scale metabolic models for microbial species and communities. ''Nucleic Acids Res''. 2018 Sep 6; '''46''' (15):7542-7553
Tetranuclear Oxo-Titanium Clusters with Different Carboxylate Aromatic Ligands: Optical Properties, DFT Calculations, and Photoactivity. Description: Janek, Maciej, et al. Tetranuclear Oxo-Titanium Clusters with Different Carboxylate Aromatic Ligands: Optical Properties, DFT Calculations, and Photoactivity. ''Materials (Basel)''. 2018 Sep 8; '''11''' (9):
Metatranscriptomics reveals a differential temperature effect on the structural and functional organization of the anaerobic food web in rice field soil. Description: Peng, Jingjing, et al. Metatranscriptomics reveals a differential temperature effect on the structural and functional organization of the anaerobic food web in rice field soil. ''Microbiome''. 2018 Sep 19; '''6''' (1):169
Pathogenic functions of host microbiota. Description: Rath, Silke, et al. Pathogenic functions of host microbiota. ''Microbiome''. 2018 Sep 28; '''6''' (1):174
Evolutionary Genomics of Metchnikovella incurvata (Metchnikovellidae): An Early Branching Microsporidium. Description: Galindo, Luis Javier, et al. Evolutionary Genomics of Metchnikovella incurvata (Metchnikovellidae): An Early Branching Microsporidium. ''Genome Biol Evol''. 2018 Oct 1; '''10''' (10):2736-2748
Integrated systems analysis reveals conserved gene networks underlying response to spinal cord injury. Description: Squair, Jordan W, et al. Integrated systems analysis reveals conserved gene networks underlying response to spinal cord injury. ''Elife''. 2018 Oct 2; '''7''':
Caloric restriction promotes functional changes involving short-chain fatty acid biosynthesis in the rat gut microbiota. Description: Tanca, Alessandro, et al. Caloric restriction promotes functional changes involving short-chain fatty acid biosynthesis in the rat gut microbiota. ''Sci Rep''. 2018 Oct 3; '''8''' (1):14778
Immune-suppression by OsHV-1 viral infection causes fatal bacteraemia in Pacific oysters. Description: de Lorgeril, Julien, et al. Immune-suppression by OsHV-1 viral infection causes fatal bacteraemia in Pacific oysters. ''Nat Commun''. 2018 Oct 11; '''9''' (1):4215
Protective role of the vulture facial skin and gut microbiomes aid adaptation to scavenging. Description: Zepeda Mendoza, Marie Lisandra, et al. Protective role of the vulture facial skin and gut microbiomes aid adaptation to scavenging. ''Acta Vet Scand''. 2018 Oct 11; '''60''' (1):61
Developing specific molecular biomarkers for thermal stress in salmonids. Description: Akbarzadeh, Arash, et al. Developing specific molecular biomarkers for thermal stress in salmonids. ''BMC Genomics''. 2018 Oct 16; '''19''' (1):749
The chemodiversity of paddy soil dissolved organic matter correlates with microbial community at continental scales. Description: Li, Hong-Yi, et al. The chemodiversity of paddy soil dissolved organic matter correlates with microbial community at continental scales. ''Microbiome''. 2018 Oct 19; '''6''' (1):187
Transient O2 pulses direct Fe crystallinity and Fe(III)-reducer gene expression within a soil microbiome. Description: Wilmoth, Jared Lee, et al. Transient O2 pulses direct Fe crystallinity and Fe(III)-reducer gene expression within a soil microbiome. ''Microbiome''. 2018 Oct 23; '''6''' (1):189
Bis(6-Diphenylphosphinoacenaphth-5-yl)Telluride as a Ligand toward Manganese and Rhenium Carbonyls. Description: Do, Truong Giang, et al. Bis(6-Diphenylphosphinoacenaphth-5-yl)Telluride as a Ligand toward Manganese and Rhenium Carbonyls. ''Molecules''. 2018 Oct 29; '''23''' (11):
Fucosylated Human Milk Oligosaccharides and N-Glycans in the Milk of Chinese Mothers Regulate the Gut Microbiome of Their Breast-Fed Infants during Different Lactation Stages. Description: Bai, Yaqiang, et al. Fucosylated Human Milk Oligosaccharides and N-Glycans in the Milk of Chinese Mothers Regulate the Gut Microbiome of Their Breast-Fed Infants during Different Lactation Stages. ''mSystems''. 2018 Nov-Dec; '''3''' (6):
Functional shifts in microbial mats recapitulate early Earth metabolic transitions. Description: Gutierrez-Preciado, Ana, et al. Functional shifts in microbial mats recapitulate early Earth metabolic transitions. ''Nat Ecol Evol''. 2018 Nov; '''2''' (11):1700-1708
Species Designations Belie Phenotypic and Genotypic Heterogeneity in Oral Streptococci. Description: Velsko, Irina M, et al. Species Designations Belie Phenotypic and Genotypic Heterogeneity in Oral Streptococci. ''mSystems''. 2018 Nov-Dec; '''3''' (6):
Species-level functional profiling of metagenomes and metatranscriptomes. Description: Franzosa, Eric A, et al. Species-level functional profiling of metagenomes and metatranscriptomes. ''Nat Methods''. 2018 Nov; '''15''' (11):962-968
Viral diversity of Rhipicephalus microplus parasitizing cattle in southern Brazil. Description: Souza, William Marciel de, et al. Viral diversity of Rhipicephalus microplus parasitizing cattle in southern Brazil. ''Sci Rep''. 2018 Nov 5; '''8''' (1):16315
Genome-wide identification and characterization of long non-coding RNAs involved in the early somatic embryogenesis in Dimocarpus longan Lour. Description: Chen, Yan, et al. Genome-wide identification and characterization of long non-coding RNAs involved in the early somatic embryogenesis in Dimocarpus longan Lour. ''BMC Genomics''. 2018 Nov 6; '''19''' (1):805
Visualization-assisted binning of metagenome assemblies reveals potential new pathogenic profiles in idiopathic travelers' diarrhea. Description: Zhu, Qiyun, et al. Visualization-assisted binning of metagenome assemblies reveals potential new pathogenic profiles in idiopathic travelers' diarrhea. ''Microbiome''. 2018 Nov 8; '''6''' (1):201
Magnetic Properties and Microstructure of FeCoNi(CuAl)0.8Snx (0 Description: Li, Zhong, et al. Magnetic Properties and Microstructure of FeCoNi(CuAl)0.8Snx (0
Succession and persistence of microbial communities and antimicrobial resistance genes associated with International Space Station environmental surfaces. Description: Singh, Nitin Kumar, et al. Succession and persistence of microbial communities and antimicrobial resistance genes associated with International Space Station environmental surfaces. ''Microbiome''. 2018 Nov 13; '''6''' (1):204
The structure and function of the global citrus rhizosphere microbiome. Description: Xu, Jin, et al. The structure and function of the global citrus rhizosphere microbiome. ''Nat Commun''. 2018 Nov 20; '''9''' (1):4894
Communities of Phytoplankton Viruses across the Transition Zone of the St. Lawrence Estuary. Description: Labbe, Myriam, et al. Communities of Phytoplankton Viruses across the Transition Zone of the St. Lawrence Estuary. ''Viruses''. 2018 Nov 27; '''10''' (12):
The chicken gut metagenome and the modulatory effects of plant-derived benzylisoquinoline alkaloids. Description: Huang, Peng, et al. The chicken gut metagenome and the modulatory effects of plant-derived benzylisoquinoline alkaloids. ''Microbiome''. 2018 Nov 27; '''6''' (1):211
Nuclear genome sequence of the plastid-lacking cryptomonad Goniomonas avonlea provides insights into the evolution of secondary plastids. Description: Cenci, Ugo, et al. Nuclear genome sequence of the plastid-lacking cryptomonad Goniomonas avonlea provides insights into the evolution of secondary plastids. ''BMC Biol''. 2018 Nov 28; '''16''' (1):137
CVID enteropathy is characterized by exceeding low mucosal IgA levels and interferon-driven inflammation possibly related to the presence of a pathobiont. Description: Shulzhenko, Natalia, et al. CVID enteropathy is characterized by exceeding low mucosal IgA levels and interferon-driven inflammation possibly related to the presence of a pathobiont. ''Clin Immunol''. 2018 Dec; '''197''': 139-153
Metagenomic analysis of captive Amur tiger faecal microbiome. Description: He, Fengping, et al. Metagenomic analysis of captive Amur tiger faecal microbiome. ''BMC Vet Res''. 2018 Dec 4; '''14''' (1):379
Studies on Silver Ions Releasing Processes and Mechanical Properties of Surface-Modified Titanium Alloy Implants. Description: Radtke, Aleksandra, et al. Studies on Silver Ions Releasing Processes and Mechanical Properties of Surface-Modified Titanium Alloy Implants. ''Int J Mol Sci''. 2018 Dec 9; '''19''' (12):
Differential gene expression for carotenoid biosynthesis in a green alga Ulva prolifera based on transcriptome analysis. Description: He, Yuan, et al. Differential gene expression for carotenoid biosynthesis in a green alga Ulva prolifera based on transcriptome analysis. ''BMC Genomics''. 2018 Dec 13; '''19''' (1):916
Iron(III) Half Salen Catalysts for Atom Transfer Radical and Ring-Opening Polymerizations. Description: Fazekas, Eszter, et al. Iron(III) Half Salen Catalysts for Atom Transfer Radical and Ring-Opening Polymerizations. ''ACS Omega''. 2018 Dec 31; '''3''' (12):16945-16953
Predicting anxiety from wholebrain activity patterns to emotional faces in young adults: a machine learning approach. Description: Portugal, Liana C L, et al. Predicting anxiety from wholebrain activity patterns to emotional faces in young adults: a machine learning approach. ''Neuroimage Clin''. 2019; '''23''': 101813
A Comparative Analysis of Biosynthetic Gene Clusters in Lean and Obese Humans. Description: Wang, Shengqin, et al. A Comparative Analysis of Biosynthetic Gene Clusters in Lean and Obese Humans. ''Biomed Res Int''. 2019; '''2019''': 6361320
A Comprehensive Survey of Tools and Software for Active Subnetwork Identification. Description: Nguyen, Hung, et al. A Comprehensive Survey of Tools and Software for Active Subnetwork Identification. ''Front Genet''. 2019; '''10''': 155
Adapting Community Detection Algorithms for Disease Module Identification in Heterogeneous Biological Networks. Description: Tripathi, Beethika, et al. Adapting Community Detection Algorithms for Disease Module Identification in Heterogeneous Biological Networks. ''Front Genet''. 2019; '''10''': 164
Aggregation-Induced Fluorescence of Carbazole and o-Carborane Based Organic Fluorophore. Description: Jiao, Jiemin, et al. Aggregation-Induced Fluorescence of Carbazole and o-Carborane Based Organic Fluorophore. ''Front Chem''. 2019; '''7''': 768
Arabinogalactan Proteins Are the Possible Extracellular Molecules for Binding Exogenous Cerium(III) in the Acidic Environment Outside Plant Cells. Description: Yang, Qing, et al. Arabinogalactan Proteins Are the Possible Extracellular Molecules for Binding Exogenous Cerium(III) in the Acidic Environment Outside Plant Cells. ''Front Plant Sci''. 2019; '''10''': 153
A single introduction of Yersinia pestis to Brazil during the 3rd plague pandemic. Description: Vogler, Amy J, et al. A single introduction of Yersinia pestis to Brazil during the 3rd plague pandemic. ''PLoS One''. 2019; '''14''' (1):e0209478
Associated Bacteria Affect Sexual Reproduction by Altering Gene Expression and Metabolic Processes in a Biofilm Inhabiting Diatom. Description: Cirri, Emilio, et al. Associated Bacteria Affect Sexual Reproduction by Altering Gene Expression and Metabolic Processes in a Biofilm Inhabiting Diatom. ''Front Microbiol''. 2019; '''10''': 1790
Beneficial Endophytic Bacteria-Serendipita indica Interaction for Crop Enhancement and Resistance to Phytopathogens. Description: Del Barrio-Duque, Alejandro, et al. Beneficial Endophytic Bacteria-Serendipita indica Interaction for Crop Enhancement and Resistance to Phytopathogens. ''Front Microbiol''. 2019; '''10''': 2888
Cell Wall Enzymes in Zygnema circumcarinatum UTEX 1559 Respond to Osmotic Stress in a Plant-Like Fashion. Description: Fitzek, Elisabeth, et al. Cell Wall Enzymes in Zygnema circumcarinatum UTEX 1559 Respond to Osmotic Stress in a Plant-Like Fashion. ''Front Plant Sci''. 2019; '''10''': 732
Characterization of the cecum microbiome from wild and captive rock ptarmigans indigenous to Arctic Norway. Description: Salgado-Flores, Alejandro, et al. Characterization of the cecum microbiome from wild and captive rock ptarmigans indigenous to Arctic Norway. ''PLoS One''. 2019; '''14''' (3):e0213503
Chromosome-Level Alpaca Reference Genome VicPac3.1 Improves Genomic Insight Into the Biology of New World Camelids. Description: Richardson, Mark F, et al. Chromosome-Level Alpaca Reference Genome VicPac3.1 Improves Genomic Insight Into the Biology of New World Camelids. ''Front Genet''. 2019; '''10''': 586
Comparative genomics and genome biology of Campylobacter showae. Description: Hsu, Tiffany, et al. Comparative genomics and genome biology of Campylobacter showae. ''Emerg Microbes Infect''. 2019; '''8''' (1):827-840
De novo transcriptome profile of coccolithophorid alga Emiliania huxleyi CCMP371 at different calcium concentrations with proteome analysis. Description: Nam, Onyou, et al. De novo transcriptome profile of coccolithophorid alga Emiliania huxleyi CCMP371 at different calcium concentrations with proteome analysis. ''PLoS One''. 2019; '''14''' (8):e0221938
Development of a Blocking Primer to Inhibit the PCR Amplification of the 18S rDNA Sequences of Litopenaeus vannamei and Its Efficacy in Crassostrea hongkongensis. Description: Liu, Cong, et al. Development of a Blocking Primer to Inhibit the PCR Amplification of the 18S rDNA Sequences of Litopenaeus vannamei and Its Efficacy in Crassostrea hongkongensis. ''Front Microbiol''. 2019; '''10''': 830
Discovery of novel astrovirus genotype species in small ruminants. Description: Kauer, Ronja V, et al. Discovery of novel astrovirus genotype species in small ruminants. ''PeerJ''. 2019; '''7''': e7338
Distinct Taxonomic and Functional Profiles of the Microbiome Associated With Different Soil Horizons of a Moist Tussock Tundra in Alaska. Description: Tripathi, Binu M, et al. Distinct Taxonomic and Functional Profiles of the Microbiome Associated With Different Soil Horizons of a Moist Tussock Tundra in Alaska. ''Front Microbiol''. 2019; '''10''': 1442
Early-life gut microbiome modulation reduces the abundance of antibiotic-resistant bacteria. Description: Casaburi, Giorgio, et al. Early-life gut microbiome modulation reduces the abundance of antibiotic-resistant bacteria. ''Antimicrob Resist Infect Control''. 2019; '''8''': 131
Exploring the Fecal Microbial Composition and Metagenomic Functional Capacities Associated With Feed Efficiency in Commercial DLY Pigs. Description: Quan, Jianping, et al. Exploring the Fecal Microbial Composition and Metagenomic Functional Capacities Associated With Feed Efficiency in Commercial DLY Pigs. ''Front Microbiol''. 2019; '''10''': 52
Fecal Metaproteomic Analysis Reveals Unique Changes of the Gut Microbiome Functions After Consumption of Sourdough Carasau Bread. Description: Abbondio, Marcello, et al. Fecal Metaproteomic Analysis Reveals Unique Changes of the Gut Microbiome Functions After Consumption of Sourdough Carasau Bread. ''Front Microbiol''. 2019; '''10''': 1733
Flax rust infection transcriptomics reveals a transcriptional profile that may be indicative for rust Avr genes. Description: Wu, Wenjie, et al. Flax rust infection transcriptomics reveals a transcriptional profile that may be indicative for rust Avr genes. ''PLoS One''. 2019; '''14''' (12):e0226106
Frequency of disturbance alters diversity, function, and underlying assembly mechanisms of complex bacterial communities. Description: Santillan, Ezequiel, et al. Frequency of disturbance alters diversity, function, and underlying assembly mechanisms of complex bacterial communities. ''NPJ Biofilms Microbiomes''. 2019; '''5''': 8
Gene Expression in the Salivary Gland of Rhipicephalus (Boophilus) microplus Fed on Tick-Susceptible and Tick-Resistant Hosts. Description: Giachetto, Poliana Fernanda, et al. Gene Expression in the Salivary Gland of Rhipicephalus (Boophilus) microplus Fed on Tick-Susceptible and Tick-Resistant Hosts. ''Front Cell Infect Microbiol''. 2019; '''9''': 477
Genomic analysis of bacteria in the Acute Oak Decline pathobiome. Description: Doonan, James, et al. Genomic analysis of bacteria in the Acute Oak Decline pathobiome. ''Microb Genom''. 2019 Jan; '''5''' (1):
Genomic and Metagenomic Insights Into the Microbial Community in the Regenerating Intestine of the Sea Cucumber Apostichopus japonicus. Description: Zhang, Hongxia, et al. Genomic and Metagenomic Insights Into the Microbial Community in the Regenerating Intestine of the Sea Cucumber Apostichopus japonicus. ''Front Microbiol''. 2019; '''10''': 1165
Giant Heterometallic [Mn36Ni4](0/2-) and [Mn32Co8] "Loops-of-Loops-and-Supertetrahedra" Molecular Aggregates. Description: Charalambous, Maria, et al. Giant Heterometallic [Mn36Ni4](0/2-) and [Mn32Co8] "Loops-of-Loops-and-Supertetrahedra" Molecular Aggregates. ''Front Chem''. 2019; '''7''': 96
Gut Microbiota of Wild and Captive Alpine Musk Deer (Moschus chrysogaster). Description: Sun, Yewen, et al. Gut Microbiota of Wild and Captive Alpine Musk Deer (Moschus chrysogaster). ''Front Microbiol''. 2019; '''10''': 3156
High-throughput screening for texturing Lactococcus strains. Description: Poulsen, Vera Kuzina, et al. High-throughput screening for texturing Lactococcus strains. ''FEMS Microbiol Lett''. 2019 Jan 1; '''366''' (2):
Histopathological Features and Composition of Gut Microbiota in Rhesus Monkey of Alcoholic Liver Disease. Description: Wang, Hong, et al. Histopathological Features and Composition of Gut Microbiota in Rhesus Monkey of Alcoholic Liver Disease. ''Front Microbiol''. 2019; '''10''': 165
Horizontal transfer of a retrotransposon between parasitic nematodes and the common shrew. Description: Dunemann, Sonja M, et al. Horizontal transfer of a retrotransposon between parasitic nematodes and the common shrew. ''Mob DNA''. 2019; '''10''': 24
Infectious Complications Are Associated With Alterations in the Gut Microbiome in Pediatric Patients With Acute Lymphoblastic Leukemia. Description: Nearing, Jacob T, et al. Infectious Complications Are Associated With Alterations in the Gut Microbiome in Pediatric Patients With Acute Lymphoblastic Leukemia. ''Front Cell Infect Microbiol''. 2019; '''9''': 28
Influence of Maternal Inulin-Type Prebiotic Intervention on Glucose Metabolism and Gut Microbiota in the Offspring of C57BL Mice. Description: Zhang, Qian, et al. Influence of Maternal Inulin-Type Prebiotic Intervention on Glucose Metabolism and Gut Microbiota in the Offspring of C57BL Mice. ''Front Endocrinol (Lausanne)''. 2019; '''10''': 675
In situ development of a methanotrophic microbiome in deep-sea sediments. Description: Ruff, S E, et al. In situ development of a methanotrophic microbiome in deep-sea sediments. ''ISME J''. 2019 Jan; '''13''' (1):197-213
In vitro Study of Lactobacillus paracasei CNCM I-1518 in Healthy and Clostridioides difficile Colonized Elderly Gut Microbiota. Description: Fehlbaum, Sophie, et al. In vitro Study of Lactobacillus paracasei CNCM I-1518 in Healthy and Clostridioides difficile Colonized Elderly Gut Microbiota. ''Front Nutr''. 2019; '''6''': 184
Long Read Single-Molecule Real-Time Sequencing Elucidates Transcriptome-Wide Heterogeneity and Complexity in Esophageal Squamous Cells. Description: Cheng, Yin-Wei, et al. Long Read Single-Molecule Real-Time Sequencing Elucidates Transcriptome-Wide Heterogeneity and Complexity in Esophageal Squamous Cells. ''Front Genet''. 2019; '''10''': 915
Metagenome of Gut Microbiota of Children With Nonalcoholic Fatty Liver Disease. Description: Zhao, Yuzhen, et al. Metagenome of Gut Microbiota of Children With Nonalcoholic Fatty Liver Disease. ''Front Pediatr''. 2019; '''7''': 518
Metagenome sequencing-based strain-level and functional characterization of supragingival microbiome associated with dental caries in children. Description: Al-Hebshi, Nezar Noor, et al. Metagenome sequencing-based strain-level and functional characterization of supragingival microbiome associated with dental caries in children. ''J Oral Microbiol''. 2019; '''11''' (1):1557986
Metagenomic Resolution of Functional Diversity in Copper Surface-Associated Marine Biofilms. Description: Zhang, Yimeng, et al. Metagenomic Resolution of Functional Diversity in Copper Surface-Associated Marine Biofilms. ''Front Microbiol''. 2019; '''10''': 2863
Metagenomics Reveals Seasonal Functional Adaptation of the Gut Microbiome to Host Feeding and Fasting in the Chinese Alligator. Description: Tang, Ke-Yi, et al. Metagenomics Reveals Seasonal Functional Adaptation of the Gut Microbiome to Host Feeding and Fasting in the Chinese Alligator. ''Front Microbiol''. 2019; '''10''': 2409
Nanangenines: drimane sesquiterpenoids as the dominant metabolite cohort of a novel Australian fungus, Aspergillus nanangensis. Description: Lacey, Heather J, et al. Nanangenines: drimane sesquiterpenoids as the dominant metabolite cohort of a novel Australian fungus, Aspergillus nanangensis. ''Beilstein J Org Chem''. 2019; '''15''': 2631-2643
Orphan Genes Shared by Pathogenic Genomes Are More Associated with Bacterial Pathogenicity. Description: Entwistle, Sarah, et al. Orphan Genes Shared by Pathogenic Genomes Are More Associated with Bacterial Pathogenicity. ''mSystems''. 2019 Jan-Feb; '''4''' (1):
Population dynamics and transcriptomic responses of Pseudomonas aeruginosa in a complex laboratory microbial community. Description: Cheng, Yingying, et al. Population dynamics and transcriptomic responses of Pseudomonas aeruginosa in a complex laboratory microbial community. ''NPJ Biofilms Microbiomes''. 2019; '''5''': 1
Presence, Diversity, and Enrichment of Respiratory Reductive Dehalogenase and Non-respiratory Hydrolytic and Oxidative Dehalogenase Genes in Terrestrial Environments. Description: Temme, Hanna R, et al. Presence, Diversity, and Enrichment of Respiratory Reductive Dehalogenase and Non-respiratory Hydrolytic and Oxidative Dehalogenase Genes in Terrestrial Environments. ''Front Microbiol''. 2019; '''10''': 1258
Prokaryotic Population Dynamics and Viral Predation in a Marine Succession Experiment Using Metagenomics. Description: Haro-Moreno, Jose M, et al. Prokaryotic Population Dynamics and Viral Predation in a Marine Succession Experiment Using Metagenomics. ''Front Microbiol''. 2019; '''10''': 2926
Review, Evaluation, and Directions for Gene-Targeted Assembly for Ecological Analyses of Metagenomes. Description: Guo, Jiarong, et al. Review, Evaluation, and Directions for Gene-Targeted Assembly for Ecological Analyses of Metagenomes. ''Front Genet''. 2019; '''10''': 957
Revisiting the Phylogenetic History of Helminths Through Genomics, the Case of the New Echinococcus oligarthrus Genome. Description: Maldonado, Lucas L, et al. Revisiting the Phylogenetic History of Helminths Through Genomics, the Case of the New Echinococcus oligarthrus Genome. ''Front Genet''. 2019; '''10''': 708
Sex-dependent and -independent transcriptional changes during haploid phase gametogenesis in the sugar kelp Saccharina latissima. Description: Pearson, Gareth A, et al. Sex-dependent and -independent transcriptional changes during haploid phase gametogenesis in the sugar kelp Saccharina latissima. ''PLoS One''. 2019; '''14''' (9):e0219723
Shotgun Metagenomics of a Water Kefir Fermentation Ecosystem Reveals a Novel Oenococcus Species. Description: Verce, Marko, et al. Shotgun Metagenomics of a Water Kefir Fermentation Ecosystem Reveals a Novel Oenococcus Species. ''Front Microbiol''. 2019; '''10''': 479
Synthesis and Characterization of 3-(1-((3,4-Dihydroxyphenethyl)amino)ethylidene)-chroman-2,4-dione as a Potential Antitumor Agent. Description: Dimic, Dusan S, et al. Synthesis and Characterization of 3-(1-((3,4-Dihydroxyphenethyl)amino)ethylidene)-chroman-2,4-dione as a Potential Antitumor Agent. ''Oxid Med Cell Longev''. 2019; '''2019''': 2069250
Target-independent high-throughput sequencing methods provide evidence that already known human viral pathogens play a main role in respiratory infections with unexplained etiology. Description: Perez-Sautu, Unai, et al. Target-independent high-throughput sequencing methods provide evidence that already known human viral pathogens play a main role in respiratory infections with unexplained etiology. ''Emerg Microbes Infect''. 2019; '''8''' (1):1054-1065
The discovery of three new hare lagoviruses reveals unexplored viral diversity in this genus. Description: Mahar, Jackie E, et al. The discovery of three new hare lagoviruses reveals unexplored viral diversity in this genus. ''Virus Evol''. 2019 Jan; '''5''' (1):vez005
The genome of the migratory nematode, Radopholus similis, reveals signatures of close association to the sedentary cyst nematodes. Description: Mathew, Reny, et al. The genome of the migratory nematode, Radopholus similis, reveals signatures of close association to the sedentary cyst nematodes. ''PLoS One''. 2019; '''14''' (10):e0224391
The Genome Sequence of Gossypioides kirkii Illustrates a Descending Dysploidy in Plants. Description: Udall, Joshua A, et al. The Genome Sequence of Gossypioides kirkii Illustrates a Descending Dysploidy in Plants. ''Front Plant Sci''. 2019; '''10''': 1541
Transcriptional Reprogramming of Pea Leaves at Early Reproductive Stages. Description: Gallardo, Karine, et al. Transcriptional Reprogramming of Pea Leaves at Early Reproductive Stages. ''Front Plant Sci''. 2019; '''10''': 1014
Transcriptome of Gonads From High Temperature Induced Sex Reversal During Sex Determination and Differentiation in Chinese Tongue Sole, Cynoglossus semilaevis. Description: Wang, Qian, et al. Transcriptome of Gonads From High Temperature Induced Sex Reversal During Sex Determination and Differentiation in Chinese Tongue Sole, Cynoglossus semilaevis. ''Front Genet''. 2019; '''10''': 1128
Viral metagenomics updated the prevalence of human papillomavirus types in anogenital warts. Description: Xu, Hui, et al. Viral metagenomics updated the prevalence of human papillomavirus types in anogenital warts. ''Emerg Microbes Infect''. 2019; '''8''' (1):1291-1299
Whole Genome Analysis of Selected Human Group A Rotavirus Strains Revealed Evolution of DS-1-Like Single- and Double-Gene Reassortant Rotavirus Strains in Pakistan During 2015-2016. Description: Sadiq, Asma, et al. Whole Genome Analysis of Selected Human Group A Rotavirus Strains Revealed Evolution of DS-1-Like Single- and Double-Gene Reassortant Rotavirus Strains in Pakistan During 2015-2016. ''Front Microbiol''. 2019; '''10''': 2641
Whole Genome Assembly of the Snout Otter Clam, Lutraria rhynchaena, Using Nanopore and Illumina Data, Benchmarked Against Bivalve Genome Assemblies. Description: Thai, Binh Thanh, et al. Whole Genome Assembly of the Snout Otter Clam, Lutraria rhynchaena, Using Nanopore and Illumina Data, Benchmarked Against Bivalve Genome Assemblies. ''Front Genet''. 2019; '''10''': 1158
Whole Genome Sequencing of Extended-Spectrum Beta-Lactamase (ESBL)-Producing Escherichia coli Isolated From a Wastewater Treatment Plant in China. Description: Jiang, Xiawei, et al. Whole Genome Sequencing of Extended-Spectrum Beta-Lactamase (ESBL)-Producing Escherichia coli Isolated From a Wastewater Treatment Plant in China. ''Front Microbiol''. 2019; '''10''': 1797
Exploring the unmapped DNA and RNA reads in a songbird genome. Description: Laine, Veronika N, et al. Exploring the unmapped DNA and RNA reads in a songbird genome. ''BMC Genomics''. 2019 Jan 8; '''20''' (1):19
Fecal pollution can explain antibiotic resistance gene abundances in anthropogenically impacted environments. Description: Karkman, Antti, et al. Fecal pollution can explain antibiotic resistance gene abundances in anthropogenically impacted environments. ''Nat Commun''. 2019 Jan 8; '''10''' (1):80
Silver(i) pyridylphosphonates - synthesis, structure, stability and light-insensitivity investigation. Description: Rendosova, Michaela, et al. Silver(i) pyridylphosphonates - synthesis, structure, stability and light-insensitivity investigation. ''RSC Adv''. 2019 Jan 9; '''9''' (3):1570-1575
Whole rumen metagenome sequencing allows classifying and predicting feed efficiency and intake levels in cattle. Description: Delgado, Beatriz, et al. Whole rumen metagenome sequencing allows classifying and predicting feed efficiency and intake levels in cattle. ''Sci Rep''. 2019 Jan 9; '''9''' (1):11
Comparative metagenomic and metatranscriptomic analyses reveal the breed effect on the rumen microbiome and its associations with feed efficiency in beef cattle. Description: Li, Fuyong, et al. Comparative metagenomic and metatranscriptomic analyses reveal the breed effect on the rumen microbiome and its associations with feed efficiency in beef cattle. ''Microbiome''. 2019 Jan 14; '''7''' (1):6
Metagenomic Sequencing of HIV-1 in the Blood and Female Genital Tract Reveals Little Quasispecies Diversity during Acute Infection. Description: Piantadosi, Anne, et al. Metagenomic Sequencing of HIV-1 in the Blood and Female Genital Tract Reveals Little Quasispecies Diversity during Acute Infection. ''J Virol''. 2019 Jan 15; '''93''' (2):
Dose-dependent impact of oxytetracycline on the veal calf microbiome and resistome. Description: Keijser, Bart J F, et al. Dose-dependent impact of oxytetracycline on the veal calf microbiome and resistome. ''BMC Genomics''. 2019 Jan 19; '''20''' (1):65
Gut Virome Analysis of Cameroonians Reveals High Diversity of Enteric Viruses, Including Potential Interspecies Transmitted Viruses. Description: Yinda, Claude Kwe, et al. Gut Virome Analysis of Cameroonians Reveals High Diversity of Enteric Viruses, Including Potential Interspecies Transmitted Viruses. ''mSphere''. 2019 Jan 23; '''4''' (1):
Metagenomic Characterization of the Viral Community of the South Scotia Ridge. Description: Yang, Qingwei, et al. Metagenomic Characterization of the Viral Community of the South Scotia Ridge. ''Viruses''. 2019 Jan 24; '''11''' (2):
Metagenome Profiling Identifies Potential Biocontrol Agents for Selaginella kraussiana in New Zealand. Description: Dang, Zhenhua, et al. Metagenome Profiling Identifies Potential Biocontrol Agents for Selaginella kraussiana in New Zealand. ''Genes (Basel)''. 2019 Jan 31; '''10''' (2):
Acid mine drainage affects the diversity and metal resistance gene profile of sediment bacterial community along a river. Description: Zhang, Xiaohui, et al. Acid mine drainage affects the diversity and metal resistance gene profile of sediment bacterial community along a river. ''Chemosphere''. 2019 Feb; '''217''': 790-799
A High-quality Draft Genome Assembly of Sinella curviseta: A Soil Model Organism (Collembola). Description: Zhang, Feng, et al. A High-quality Draft Genome Assembly of Sinella curviseta: A Soil Model Organism (Collembola). ''Genome Biol Evol''. 2019 Feb 1; '''11''' (2):521-530
Effusion: prediction of protein function from sequence similarity networks. Description: Yunes, Jeffrey M, et al. Effusion: prediction of protein function from sequence similarity networks. ''Bioinformatics''. 2019 Feb 1; '''35''' (3):442-451
Gut microbiome structure and metabolic activity in inflammatory bowel disease. Description: Franzosa, Eric A, et al. Gut microbiome structure and metabolic activity in inflammatory bowel disease. ''Nat Microbiol''. 2019 Feb; '''4''' (2):293-305
Ruminal metagenomic analyses of goat data reveals potential functional microbiota by supplementation with essential oil-cobalt complexes. Description: Lei, Zhaomin, et al. Ruminal metagenomic analyses of goat data reveals potential functional microbiota by supplementation with essential oil-cobalt complexes. ''BMC Microbiol''. 2019 Feb 4; '''19''' (1):30
Network-based microsynteny analysis identifies major differences and genomic outliers in mammalian and angiosperm genomes. Description: Zhao, Tao, et al. Network-based microsynteny analysis identifies major differences and genomic outliers in mammalian and angiosperm genomes. ''Proc Natl Acad Sci U S A''. 2019 Feb 5; '''116''' (6):2165-2174
Transcriptome analysis and metabolic profiling reveal the key role of alpha-linolenic acid in dormancy regulation of European pear. Description: Gabay, Gilad, et al. Transcriptome analysis and metabolic profiling reveal the key role of alpha-linolenic acid in dormancy regulation of European pear. ''J Exp Bot''. 2019 Feb 5; '''70''' (3):1017-1031
Microwave-Assisted Synthesis of Mono- and Disubstituted 4-Hydroxyacetophenone Derivatives via Mannich Reaction: Synthesis, XRD and HS-Analysis. Description: Aljohani, Ghadah, et al. Microwave-Assisted Synthesis of Mono- and Disubstituted 4-Hydroxyacetophenone Derivatives via Mannich Reaction: Synthesis, XRD and HS-Analysis. ''Molecules''. 2019 Feb 7; '''24''' (3):
A network biology approach to unraveling inherited axonopathies. Description: Bis-Brewer, Dana M, et al. A network biology approach to unraveling inherited axonopathies. ''Sci Rep''. 2019 Feb 8; '''9''' (1):1692
Phylogenomic Analyses of Bradyrhizobium Reveal Uneven Distribution of the Lateral and Subpolar Flagellar Systems, Which Extends to Rhizobiales. Description: Garrido-Sanz, Daniel, et al. Phylogenomic Analyses of Bradyrhizobium Reveal Uneven Distribution of the Lateral and Subpolar Flagellar Systems, Which Extends to Rhizobiales. ''Microorganisms''. 2019 Feb 13; '''7''' (2):
Virome Diversity Correlates with Intestinal Microbiome Diversity in Adult Monozygotic Twins. Description: Moreno-Gallego, J Leonardo, et al. Virome Diversity Correlates with Intestinal Microbiome Diversity in Adult Monozygotic Twins. ''Cell Host Microbe''. 2019 Feb 13; '''25''' (2):261-272.e5
Microbial Organic Matter Degradation Potential in Baltic Sea Sediments Is Influenced by Depositional Conditions and In Situ Geochemistry. Description: Zinke, Laura A, et al. Microbial Organic Matter Degradation Potential in Baltic Sea Sediments Is Influenced by Depositional Conditions and In Situ Geochemistry. ''Appl Environ Microbiol''. 2019 Feb 15; '''85''' (4):
o-Vanillin Derived Schiff Bases and Their Organotin(IV) Compounds: Synthesis, Structural Characterisation, In-Silico Studies and Cytotoxicity. Description: Yusof, Enis Nadia Md, et al. o-Vanillin Derived Schiff Bases and Their Organotin(IV) Compounds: Synthesis, Structural Characterisation, In-Silico Studies and Cytotoxicity. ''Int J Mol Sci''. 2019 Feb 15; '''20''' (4):
Evolutionary Model of Cluster Divergence of the Emergent Marine Pathogen Vibrio vulnificus: From Genotype to Ecotype. Description: Lopez-Perez, Mario, et al. Evolutionary Model of Cluster Divergence of the Emergent Marine Pathogen Vibrio vulnificus: From Genotype to Ecotype. ''MBio''. 2019 Feb 19; '''10''' (1):
Sources and selection of snow-specific microbial communities in a Greenlandic sea ice snow cover. Description: Maccario, Lorrie, et al. Sources and selection of snow-specific microbial communities in a Greenlandic sea ice snow cover. ''Sci Rep''. 2019 Feb 19; '''9''' (1):2290
Genomic and metatranscriptomic analyses of carbon remineralization in an Antarctic polynya. Description: Kim, So-Jeong, et al. Genomic and metatranscriptomic analyses of carbon remineralization in an Antarctic polynya. ''Microbiome''. 2019 Feb 20; '''7''' (1):29
Viral metagenomics revealed novel betatorquevirus species in pediatric inpatients with encephalitis/meningoencephalitis from Ghana. Description: Eibach, Daniel, et al. Viral metagenomics revealed novel betatorquevirus species in pediatric inpatients with encephalitis/meningoencephalitis from Ghana. ''Sci Rep''. 2019 Feb 20; '''9''' (1):2360
Determining the maximum lanthanum incorporation in the fluorite structure of La-doped ceria nanocubes for enhanced redox ability. Description: Loche, Danilo, et al. Determining the maximum lanthanum incorporation in the fluorite structure of La-doped ceria nanocubes for enhanced redox ability. ''RSC Adv''. 2019 Feb 22; '''9''' (12):6745-6751
Blubber transcriptome responses to repeated ACTH administration in a marine mammal. Description: Deyarmin, Jared S, et al. Blubber transcriptome responses to repeated ACTH administration in a marine mammal. ''Sci Rep''. 2019 Feb 25; '''9''' (1):2718
Redox traits characterize the organization of global microbial communities. Description: Ramirez-Flandes, Salvador, et al. Redox traits characterize the organization of global microbial communities. ''Proc Natl Acad Sci U S A''. 2019 Feb 26; '''116''' (9):3630-3635
Genome Detective: an automated system for virus identification from high-throughput sequencing data. Description: Vilsker, Michael, et al. Genome Detective: an automated system for virus identification from high-throughput sequencing data. ''Bioinformatics''. 2019 Mar 1; '''35''' (5):871-873
Genomic variation and strain-specific functional adaptation in the human gut microbiome during early life. Description: Vatanen, Tommi, et al. Genomic variation and strain-specific functional adaptation in the human gut microbiome during early life. ''Nat Microbiol''. 2019 Mar; '''4''' (3):470-479
Origin and evolution of the octoploid strawberry genome. Description: Edger, Patrick P, et al. Origin and evolution of the octoploid strawberry genome. ''Nat Genet''. 2019 Mar; '''51''' (3):541-547
The complex geography of domestication of the African rice Oryza glaberrima. Description: Choi, Jae Young, et al. The complex geography of domestication of the African rice Oryza glaberrima. ''PLoS Genet''. 2019 Mar; '''15''' (3):e1007414
Whole-Genome Sequence Data Uncover Widespread Heterothallism in the Largest Group of Lichen-Forming Fungi. Description: Pizarro, David, et al. Whole-Genome Sequence Data Uncover Widespread Heterothallism in the Largest Group of Lichen-Forming Fungi. ''Genome Biol Evol''. 2019 Mar 1; '''11''' (3):721-730
Diversity and Evolution of Viral Pathogen Community in Cave Nectar Bats (Eonycteris spelaea). Description: Mendenhall, Ian H, et al. Diversity and Evolution of Viral Pathogen Community in Cave Nectar Bats (Eonycteris spelaea). ''Viruses''. 2019 Mar 12; '''11''' (3):
Metagenomic analysis of microbe-mediated vitamin metabolism in the human gut microbiome. Description: Das, Promi, et al. Metagenomic analysis of microbe-mediated vitamin metabolism in the human gut microbiome. ''BMC Genomics''. 2019 Mar 12; '''20''' (1):208
Production Phase Affects the Bioaerosol MicrobialComposition and Functional Potential in SwineConfinement Buildings. Description: Yan, Honglin, et al. Production Phase Affects the Bioaerosol MicrobialComposition and Functional Potential in SwineConfinement Buildings. ''Animals (Basel)''. 2019 Mar 12; '''9''' (3):
Fecal metatranscriptomics of macaques with idiopathic chronic diarrhea reveals altered mucin degradation and fucose utilization. Description: Westreich, Samuel T, et al. Fecal metatranscriptomics of macaques with idiopathic chronic diarrhea reveals altered mucin degradation and fucose utilization. ''Microbiome''. 2019 Mar 18; '''7''' (1):41
Identification of Differentiating Metabolic Pathways between Infant Gut Microbiome Populations Reveals Depletion of Function-Level Adaptation to Human Milk in the Finnish Population. Description: Majta, Jan, et al. Identification of Differentiating Metabolic Pathways between Infant Gut Microbiome Populations Reveals Depletion of Function-Level Adaptation to Human Milk in the Finnish Population. ''mSphere''. 2019 Mar 20; '''4''' (2):
Gut microbiome-based secondary metabolite biosynthetic gene clusters detection in Parkinson's disease. Description: Wang, Shengqin, et al. Gut microbiome-based secondary metabolite biosynthetic gene clusters detection in Parkinson's disease. ''Neurosci Lett''. 2019 Mar 23; '''696''': 93-98
Encircling the regions of the pharmacogenomic landscape that determine drug response. Description: Fernandez-Torras, Adria, et al. Encircling the regions of the pharmacogenomic landscape that determine drug response. ''Genome Med''. 2019 Mar 26; '''11''' (1):17
A long-term field experiment demonstrates the influence of tillage on the bacterial potential to produce soil structure-stabilizing agents such as exopolysaccharides and lipopolysaccharides. Description: Cania, Barbara, et al. A long-term field experiment demonstrates the influence of tillage on the bacterial potential to produce soil structure-stabilizing agents such as exopolysaccharides and lipopolysaccharides. ''Environ Microbiome''. 2019 Mar 28; '''14''' (1):1
A new genomic blueprint of the human gut microbiota. Description: Almeida, Alexandre, et al. A new genomic blueprint of the human gut microbiota. ''Nature''. 2019 Apr; '''568''' (7753):499-504
Carbon Fixation by Marine Ultrasmall Prokaryotes. Description: Lannes, Romain, et al. Carbon Fixation by Marine Ultrasmall Prokaryotes. ''Genome Biol Evol''. 2019 Apr 1; '''11''' (4):1166-1177
The Distribution of Tryptophan-Dependent Indole-3-Acetic Acid Synthesis Pathways in Bacteria Unraveled by Large-Scale Genomic Analysis. Description: Zhang, Pengfan, et al. The Distribution of Tryptophan-Dependent Indole-3-Acetic Acid Synthesis Pathways in Bacteria Unraveled by Large-Scale Genomic Analysis. ''Molecules''. 2019 Apr 10; '''24''' (7):
Synthesis and pharmacological evaluation of novel arylpiperazine oxicams derivatives as potent analgesics without ulcerogenicity. Description: Szczesniak-Siega, Berenika M, et al. Synthesis and pharmacological evaluation of novel arylpiperazine oxicams derivatives as potent analgesics without ulcerogenicity. ''Bioorg Med Chem''. 2019 Apr 15; '''27''' (8):1619-1628
Annotated bacterial chromosomes from frame-shift-corrected long-read metagenomic data. Description: Arumugam, Krithika, et al. Annotated bacterial chromosomes from frame-shift-corrected long-read metagenomic data. ''Microbiome''. 2019 Apr 16; '''7''' (1):61
Genome-wide association study of resistance to stripe rust (Puccinia striiformis f. sp. tritici) in Sichuan wheat. Description: Ye, Xueling, et al. Genome-wide association study of resistance to stripe rust (Puccinia striiformis f. sp. tritici) in Sichuan wheat. ''BMC Plant Biol''. 2019 Apr 16; '''19''' (1):147
Mitovirus and Mitochondrial Coding Sequences from Basal Fungus Entomophthora muscae. Description: Nibert, Max L, et al. Mitovirus and Mitochondrial Coding Sequences from Basal Fungus Entomophthora muscae. ''Viruses''. 2019 Apr 17; '''11''' (4):
Distribution and Phylogeny of Erythrocytic Necrosis Virus (ENV) in Salmon Suggests Marine Origin. Description: Pagowski, Veronica A, et al. Distribution and Phylogeny of Erythrocytic Necrosis Virus (ENV) in Salmon Suggests Marine Origin. ''Viruses''. 2019 Apr 18; '''11''' (4):
Variation in pigmentation gene expression is associated with distinct aposematic color morphs in the poison frog Dendrobates auratus. Description: Stuckert, Adam M M, et al. Variation in pigmentation gene expression is associated with distinct aposematic color morphs in the poison frog Dendrobates auratus. ''BMC Evol Biol''. 2019 Apr 18; '''19''' (1):85
Metagenomics-Guided Survey, Isolation, and Characterization of Uranium Resistant Microbiota from the Savannah River Site, USA. Description: Jaswal, Rajneesh, et al. Metagenomics-Guided Survey, Isolation, and Characterization of Uranium Resistant Microbiota from the Savannah River Site, USA. ''Genes (Basel)''. 2019 Apr 28; '''10''' (5):
CMY-1/MOX-family AmpC beta-lactamases MOX-1, MOX-2 and MOX-9 were mobilized independently from three Aeromonas species. Description: Ebmeyer, Stefan, et al. CMY-1/MOX-family AmpC beta-lactamases MOX-1, MOX-2 and MOX-9 were mobilized independently from three Aeromonas species. ''J Antimicrob Chemother''. 2019 May 1; '''74''' (5):1202-1206
Comparative metagenomics of the gut microbiota in wild greylag geese (Anser anser) and ruddy shelducks (Tadorna ferruginea). Description: Wang, Wen, et al. Comparative metagenomics of the gut microbiota in wild greylag geese (Anser anser) and ruddy shelducks (Tadorna ferruginea). ''Microbiologyopen''. 2019 May; '''8''' (5):e00725
Divergent methyl-coenzyme M reductase genes in a deep-subseafloor Archaeoglobi. Description: Boyd, Joel A, et al. Divergent methyl-coenzyme M reductase genes in a deep-subseafloor Archaeoglobi. ''ISME J''. 2019 May; '''13''' (5):1269-1279
Widespread gene duplication and adaptive evolution in the RNA interference pathways of the Drosophila obscura group. Description: Crysnanto, Danang, et al. Widespread gene duplication and adaptive evolution in the RNA interference pathways of the Drosophila obscura group. ''BMC Evol Biol''. 2019 May 8; '''19''' (1):99
Pharmacokinetic Profile of Prolonged-Release Tacrolimus When Administered via Nasogastric Tube in De Novo Liver Transplantation: A Sub-Study of the DIAMOND Trial. Description: Undre, Nasrullah, et al. Pharmacokinetic Profile of Prolonged-Release Tacrolimus When Administered via Nasogastric Tube in De Novo Liver Transplantation: A Sub-Study of the DIAMOND Trial. ''Ann Transplant''. 2019 May 14; '''24''': 268-272
Gut microbial beta-glucuronidase and glycerol/diol dehydratase activity contribute to dietary heterocyclic amine biotransformation. Description: Zhang, Jianbo, et al. Gut microbial beta-glucuronidase and glycerol/diol dehydratase activity contribute to dietary heterocyclic amine biotransformation. ''BMC Microbiol''. 2019 May 16; '''19''' (1):99
The first reptilian circovirus identified infects gut and liver tissues of black-headed pythons. Description: Altan, Eda, et al. The first reptilian circovirus identified infects gut and liver tissues of black-headed pythons. ''Vet Res''. 2019 May 16; '''50''' (1):35
Back to the Salt Mines: Genome and Transcriptome Comparisons of the Halophilic Fungus Aspergillus salisburgensis and Its Halotolerant Relative Aspergillus sclerotialis. Description: Tafer, Hakim, et al. Back to the Salt Mines: Genome and Transcriptome Comparisons of the Halophilic Fungus Aspergillus salisburgensis and Its Halotolerant Relative Aspergillus sclerotialis. ''Genes (Basel)''. 2019 May 20; '''10''' (5):
Network Integrative Genomic and Transcriptomic Analysis of Carbapenem-Resistant Klebsiella pneumoniae Strains Identifies Genes for Antibiotic Resistance and Virulence. Description: Lee, Muyoung, et al. Network Integrative Genomic and Transcriptomic Analysis of Carbapenem-Resistant Klebsiella pneumoniae Strains Identifies Genes for Antibiotic Resistance and Virulence. ''mSystems''. 2019 May 21; '''4''' (4):
Solvent-driven structural topology involving energetically significant intra- and intermolecular chelate ring contacts and anticancer activities of Cu(ii) phenanthroline complexes involving benzoates: experimental and theoretical studies. Description: Bhattacharyya, Manjit K, et al. Solvent-driven structural topology involving energetically significant intra- and intermolecular chelate ring contacts and anticancer activities of Cu(ii) phenanthroline complexes involving benzoates: experimental and theoretical studies. ''RSC Adv''. 2019 May 24; '''9''' (29):16339-16356
The genomes of polyextremophilic cyanidiales contain 1% horizontally transferred genes with diverse adaptive functions. Description: Rossoni, Alessandro W, et al. The genomes of polyextremophilic cyanidiales contain 1% horizontally transferred genes with diverse adaptive functions. ''Elife''. 2019 May 31; '''8''':
Cardiac and hepatic siderosis in myelodysplastic syndrome, thalassemia and diverse causes of transfusion-dependent anemia: the TIMES study. Description: Ho, P Joy, et al. Cardiac and hepatic siderosis in myelodysplastic syndrome, thalassemia and diverse causes of transfusion-dependent anemia: the TIMES study. ''Hemasphere''. 2019 Jun; '''3''' (3):e224
Diatom genes originating from red and green algae: Implications for the secondary endosymbiosis models. Description: Morozov, A A, et al. Diatom genes originating from red and green algae: Implications for the secondary endosymbiosis models. ''Mar Genomics''. 2019 Jun; '''45''': 72-78
Disordered gut microbiota and alterations in metabolic patterns are associated with atrial fibrillation. Description: Zuo, Kun, et al. Disordered gut microbiota and alterations in metabolic patterns are associated with atrial fibrillation. ''Gigascience''. 2019 Jun 1; '''8''' (6):
Inadvertent Paralog Inclusion Drives Artifactual Topologies and Timetree Estimates in Phylogenomics. Description: Siu-Ting, Karen, et al. Inadvertent Paralog Inclusion Drives Artifactual Topologies and Timetree Estimates in Phylogenomics. ''Mol Biol Evol''. 2019 Jun 1; '''36''' (6):1344-1356
Microbial residence time is a controlling parameter of the taxonomic composition and functional profile of microbial communities. Description: Mansfeldt, Cresten, et al. Microbial residence time is a controlling parameter of the taxonomic composition and functional profile of microbial communities. ''ISME J''. 2019 Jun; '''13''' (6):1589-1601
Unprecedented reorganization of holocentric chromosomes provides insights into the enigma of lepidopteran chromosome evolution. Description: Hill, Jason, et al. Unprecedented reorganization of holocentric chromosomes provides insights into the enigma of lepidopteran chromosome evolution. ''Sci Adv''. 2019 Jun; '''5''' (6):eaau3648
Effect of Long-Term Farming Practices on Agricultural Soil Microbiome Members Represented by Metagenomically Assembled Genomes (MAGs) and Their Predicted Plant-Beneficial Genes. Description: Nelkner, Johanna, et al. Effect of Long-Term Farming Practices on Agricultural Soil Microbiome Members Represented by Metagenomically Assembled Genomes (MAGs) and Their Predicted Plant-Beneficial Genes. ''Genes (Basel)''. 2019 Jun 3; '''10''' (6):
The Effect of Donor Age and Recipient Characteristics on Renal Outcomes in Patients Receiving Prolonged-Release Tacrolimus After Liver Transplantation: Post-Hoc Analyses of the DIAMOND Study. Description: Trunecka, Pavel, et al. The Effect of Donor Age and Recipient Characteristics on Renal Outcomes in Patients Receiving Prolonged-Release Tacrolimus After Liver Transplantation: Post-Hoc Analyses of the DIAMOND Study. ''Ann Transplant''. 2019 Jun 4; '''24''': 319-327
MiCoP: microbial community profiling method for detecting viral and fungal organisms in metagenomic samples. Description: LaPierre, Nathan, et al. MiCoP: microbial community profiling method for detecting viral and fungal organisms in metagenomic samples. ''BMC Genomics''. 2019 Jun 6; '''20''' (Suppl 5):423
Lignocellulose degradation in isopods: new insights into the adaptation to terrestrial life. Description: Bredon, Marius, et al. Lignocellulose degradation in isopods: new insights into the adaptation to terrestrial life. ''BMC Genomics''. 2019 Jun 7; '''20''' (1):462
Transcriptomic Analysis Identifies New Non-Target Site Glyphosate-Resistance Genes in Conyza bonariensis. Description: Piasecki, Cristiano, et al. Transcriptomic Analysis Identifies New Non-Target Site Glyphosate-Resistance Genes in Conyza bonariensis. ''Plants (Basel)''. 2019 Jun 7; '''8''' (6):
Degradation profile of nixtamalized maize pericarp by the action of the microbial consortium PM-06. Description: Serrano-Gamboa, Jose German, et al. Degradation profile of nixtamalized maize pericarp by the action of the microbial consortium PM-06. ''AMB Express''. 2019 Jun 13; '''9''' (1):85
GUILDify v2.0: A Tool to Identify Molecular Networks Underlying Human Diseases, Their Comorbidities and Their Druggable Targets. Description: Aguirre-Plans, Joaquim, et al. GUILDify v2.0: A Tool to Identify Molecular Networks Underlying Human Diseases, Their Comorbidities and Their Druggable Targets. ''J Mol Biol''. 2019 Jun 14; '''431''' (13):2477-2484
Novel encephalomyelitis-associated astrovirus in a muskox (Ovibos moschatus): a surprise from the archives. Description: Boujon, Celine Louise, et al. Novel encephalomyelitis-associated astrovirus in a muskox (Ovibos moschatus): a surprise from the archives. ''Acta Vet Scand''. 2019 Jun 24; '''61''' (1):31
Metagenomic analysis of bile salt biotransformation in the human gut microbiome. Description: Das, Promi, et al. Metagenomic analysis of bile salt biotransformation in the human gut microbiome. ''BMC Genomics''. 2019 Jun 25; '''20''' (1):517
Geochemical-Compositional-Functional Changes in Arctic Soil Microbiomes Post Land Submergence Revealed by Metagenomics. Description: Wang, Nengfei, et al. Geochemical-Compositional-Functional Changes in Arctic Soil Microbiomes Post Land Submergence Revealed by Metagenomics. ''Microbes Environ''. 2019 Jun 27; '''34''' (2):180-190
Crossover from Antiferromagnetic to Ferromagnetic Exchange Coupling in a New Family of Bis-(mu-phenoxido)dicopper(II) Complexes: A Comprehensive Magneto-Structural Correlation by Experimental and Theoretical Study. Description: Mondal, Dhrubajyoti, et al. Crossover from Antiferromagnetic to Ferromagnetic Exchange Coupling in a New Family of Bis-(mu-phenoxido)dicopper(II) Complexes: A Comprehensive Magneto-Structural Correlation by Experimental and Theoretical Study. ''ACS Omega''. 2019 Jun 30; '''4''' (6):10558-10570
The immune system of the freshwater zebra mussel, Dreissena polymorpha, decrypted by proteogenomics of hemocytes and plasma compartments. Description: Lepretre, Maxime, et al. The immune system of the freshwater zebra mussel, Dreissena polymorpha, decrypted by proteogenomics of hemocytes and plasma compartments. ''J Proteomics''. 2019 Jun 30; '''202''': 103366
Anti-trypanosomal activity of doubly modified salinomycin derivatives. Description: Antoszczak, Michal, et al. Anti-trypanosomal activity of doubly modified salinomycin derivatives. ''Eur J Med Chem''. 2019 Jul 1; '''173''': 90-98
Disease gene prediction for molecularly uncharacterized diseases. Description: Caceres, Juan J, et al. Disease gene prediction for molecularly uncharacterized diseases. ''PLoS Comput Biol''. 2019 Jul; '''15''' (7):e1007078
Life at Home and on the Roam: Genomic Adaptions Reflect the Dual Lifestyle of an Intracellular, Facultative Symbiont. Description: Burgsdorf, Ilia, et al. Life at Home and on the Roam: Genomic Adaptions Reflect the Dual Lifestyle of an Intracellular, Facultative Symbiont. ''mSystems''. 2019 Jul-Aug; '''4''' (4):
New insights into Sauropsid Papillomaviridae evolution and epizootiology: discovery of two novel papillomaviruses in native and invasive Island geckos. Description: Agius, Jessica E, et al. New insights into Sauropsid Papillomaviridae evolution and epizootiology: discovery of two novel papillomaviruses in native and invasive Island geckos. ''Virus Evol''. 2019 Jul; '''5''' (2):vez051
Pingu virus: A new picornavirus in penguins from Antarctica. Description: de Souza, William Marciel, et al. Pingu virus: A new picornavirus in penguins from Antarctica. ''Virus Evol''. 2019 Jul; '''5''' (2):vez047
Recurrent gene co-amplification on Drosophila X and Y chromosomes. Description: Ellison, Christopher, et al. Recurrent gene co-amplification on Drosophila X and Y chromosomes. ''PLoS Genet''. 2019 Jul; '''15''' (7):e1008251
The Genome Sequence of the Anthelmintic-Susceptible New Zealand Haemonchus contortus. Description: Palevich, Nikola, et al. The Genome Sequence of the Anthelmintic-Susceptible New Zealand Haemonchus contortus. ''Genome Biol Evol''. 2019 Jul 1; '''11''' (7):1965-1970
Unexpected Roles of a Tether Harboring a Tyrosine Gatekeeper Residue in Modular Nitrite Reductase Catalysis. Description: Hedison, Tobias M, et al. Unexpected Roles of a Tether Harboring a Tyrosine Gatekeeper Residue in Modular Nitrite Reductase Catalysis. ''ACS Catal''. 2019 Jul 5; '''9''' (7):6087-6099
A pollution gradient contributes to the taxonomic, functional, and resistome diversity of microbial communities in marine sediments. Description: Chen, Jiarui, et al. A pollution gradient contributes to the taxonomic, functional, and resistome diversity of microbial communities in marine sediments. ''Microbiome''. 2019 Jul 15; '''7''' (1):104
Genome-Wide and Functional View of Proteolytic and Lipolytic Bacteria for Efficient Biogas Production through Enhanced Sewage Sludge Hydrolysis. Description: Poszytek, Krzysztof, et al. Genome-Wide and Functional View of Proteolytic and Lipolytic Bacteria for Efficient Biogas Production through Enhanced Sewage Sludge Hydrolysis. ''Molecules''. 2019 Jul 18; '''24''' (14):
Lingguizhugan decoction attenuates diet-induced obesity and hepatosteatosis via gut microbiota. Description: Liu, Meng-Ting, et al. Lingguizhugan decoction attenuates diet-induced obesity and hepatosteatosis via gut microbiota. ''World J Gastroenterol''. 2019 Jul 21; '''25''' (27):3590-3606
Crystal Structures, Photoluminescence, and Magnetism of Two Novel Transition-Metal Complex Cocrystals with Three-Dimensional H-Bonding Organic Framework or Alternating Noncovalent Anionic and Cationic Layers. Description: Gao, Xu-Sheng, et al. Crystal Structures, Photoluminescence, and Magnetism of Two Novel Transition-Metal Complex Cocrystals with Three-Dimensional H-Bonding Organic Framework or Alternating Noncovalent Anionic and Cationic Layers. ''ACS Omega''. 2019 Jul 31; '''4''' (7):12230-12237
Comparative genome analysis provides novel insight into the interaction of Aquimarina sp. AD1, BL5 and AD10 with their macroalgal host. Description: Hudson, Jennifer, et al. Comparative genome analysis provides novel insight into the interaction of Aquimarina sp. AD1, BL5 and AD10 with their macroalgal host. ''Mar Genomics''. 2019 Aug; '''46''': 8-15
Comparing the treatment effect of narrow spectrum antimicrobial, probiotic and fluid with amoxicillin in mink kits (Neovison vison) with pre-weaning diarrhea. Description: Birch, Julie Melsted, et al. Comparing the treatment effect of narrow spectrum antimicrobial, probiotic and fluid with amoxicillin in mink kits (Neovison vison) with pre-weaning diarrhea. ''Res Vet Sci''. 2019 Aug; '''125''': 121-129
High-throughput sequencing reveals no viral pathogens in eight cases of ocular adnexal extranodal marginal zone B-cell lymphoma. Description: Mollerup, Sarah, et al. High-throughput sequencing reveals no viral pathogens in eight cases of ocular adnexal extranodal marginal zone B-cell lymphoma. ''Exp Eye Res''. 2019 Aug; '''185''': 107677
Molecular Coronary Plaque Imaging Using (18)F-Fluoride. Description: Moss, Alastair J, et al. Molecular Coronary Plaque Imaging Using (18)F-Fluoride. ''Circ Cardiovasc Imaging''. 2019 Aug; '''12''' (8):e008574
Clustering co-abundant genes identifies components of the gut microbiome that are reproducibly associated with colorectal cancer and inflammatory bowel disease. Description: Minot, Samuel S, et al. Clustering co-abundant genes identifies components of the gut microbiome that are reproducibly associated with colorectal cancer and inflammatory bowel disease. ''Microbiome''. 2019 Aug 1; '''7''' (1):110
Compendium of 4,941 rumen metagenome-assembled genomes for rumen microbiome biology and enzyme discovery. Description: Stewart, Robert D, et al. Compendium of 4,941 rumen metagenome-assembled genomes for rumen microbiome biology and enzyme discovery. ''Nat Biotechnol''. 2019 Aug; '''37''' (8):953-961
Microbiota-derived lantibiotic restores resistance against vancomycin-resistant Enterococcus. Description: Kim, Sohn G, et al. Microbiota-derived lantibiotic restores resistance against vancomycin-resistant Enterococcus. ''Nature''. 2019 Aug; '''572''' (7771):665-669
Predicting Bipolar Disorder Risk Factors in Distressed Young Adults From Patterns of Brain Activation to Reward: A Machine Learning Approach. Description: de Oliveira, Leticia, et al. Predicting Bipolar Disorder Risk Factors in Distressed Young Adults From Patterns of Brain Activation to Reward: A Machine Learning Approach. ''Biol Psychiatry Cogn Neurosci Neuroimaging''. 2019 Aug; '''4''' (8):726-733
Assignment of virus and antimicrobial resistance genes to microbial hosts in a complex microbial community by combined long-read assembly and proximity ligation. Description: Bickhart, Derek M, et al. Assignment of virus and antimicrobial resistance genes to microbial hosts in a complex microbial community by combined long-read assembly and proximity ligation. ''Genome Biol''. 2019 Aug 2; '''20''' (1):153
Identification of Primary Antimicrobial Resistance Drivers in Agricultural Nontyphoidal Salmonella enterica Serovars by Using Machine Learning. Description: Maguire, Finlay, et al. Identification of Primary Antimicrobial Resistance Drivers in Agricultural Nontyphoidal Salmonella enterica Serovars by Using Machine Learning. ''mSystems''. 2019 Aug 6; '''4''' (4):
Rearing pattern alters porcine myofiber type, fat deposition, associated microbial communities and functional capacity. Description: Qi, Keke, et al. Rearing pattern alters porcine myofiber type, fat deposition, associated microbial communities and functional capacity. ''BMC Microbiol''. 2019 Aug 6; '''19''' (1):181
Gut microbiota adaptation to high altitude in indigenous animals. Description: Ma, Yan, et al. Gut microbiota adaptation to high altitude in indigenous animals. ''Biochem Biophys Res Commun''. 2019 Aug 13; '''516''' (1):120-126
MMseqs2 desktop and local web server app for fast, interactive sequence searches. Description: Mirdita, Milot, et al. MMseqs2 desktop and local web server app for fast, interactive sequence searches. ''Bioinformatics''. 2019 Aug 15; '''35''' (16):2856-2858
Bioactivity of Methoxylated and Methylated 1-Hydroxynaphthalene-2-Carboxanilides: Comparative Molecular Surface Analysis. Description: Michnova, Hana, et al. Bioactivity of Methoxylated and Methylated 1-Hydroxynaphthalene-2-Carboxanilides: Comparative Molecular Surface Analysis. ''Molecules''. 2019 Aug 18; '''24''' (16):
New perspectives on the plant PARP family: Arabidopsis PARP3 is inactive, and PARP1 exhibits predominant poly (ADP-ribose) polymerase activity in response to DNA damage. Description: Gu, Zongying, et al. New perspectives on the plant PARP family: Arabidopsis PARP3 is inactive, and PARP1 exhibits predominant poly (ADP-ribose) polymerase activity in response to DNA damage. ''BMC Plant Biol''. 2019 Aug 19; '''19''' (1):364
Antibiotic resistance and metabolic profiles as functional biomarkers that accurately predict the geographic origin of city metagenomics samples. Description: Casimiro-Soriguer, Carlos S, et al. Antibiotic resistance and metabolic profiles as functional biomarkers that accurately predict the geographic origin of city metagenomics samples. ''Biol Direct''. 2019 Aug 20; '''14''' (1):15
A Species-Wide Inventory of NLR Genes and Alleles in Arabidopsis thaliana. Description: Van de Weyer, Anna-Lena, et al. A Species-Wide Inventory of NLR Genes and Alleles in Arabidopsis thaliana. ''Cell''. 2019 Aug 22; '''178''' (5):1260-1272.e14
Expression Patterns, Molecular Characterization, and Response to Host Stress of CYP Genes from Phenacoccus solenopsis (Hemiptera: Pseudococcidae). Description: Xi, Lingyu, et al. Expression Patterns, Molecular Characterization, and Response to Host Stress of CYP Genes from Phenacoccus solenopsis (Hemiptera: Pseudococcidae). ''Insects''. 2019 Aug 22; '''10''' (9):
Eukaryote Genes Are More Likely than Prokaryote Genes to Be Composites. Description: Ou, Yaqing, et al. Eukaryote Genes Are More Likely than Prokaryote Genes to Be Composites. ''Genes (Basel)''. 2019 Aug 28; '''10''' (9):
Metagenomic Analysis of Virus Diversity and Relative Abundance in a Eutrophic Freshwater Harbour. Description: Palermo, Christine N, et al. Metagenomic Analysis of Virus Diversity and Relative Abundance in a Eutrophic Freshwater Harbour. ''Viruses''. 2019 Aug 28; '''11''' (9):
Stable distinct core eukaryotic viromes in different mosquito species from Guadeloupe, using single mosquito viral metagenomics. Description: Shi, Chenyan, et al. Stable distinct core eukaryotic viromes in different mosquito species from Guadeloupe, using single mosquito viral metagenomics. ''Microbiome''. 2019 Aug 28; '''7''' (1):121
Uncovering the cellular and humoral immune responses of Antheraea pernyi hemolymph to Antheraea pernyi nucleopolyhedrovirus infection by transcriptome analysis. Description: Wang, Guobao, et al. Uncovering the cellular and humoral immune responses of Antheraea pernyi hemolymph to Antheraea pernyi nucleopolyhedrovirus infection by transcriptome analysis. ''J Invertebr Pathol''. 2019 Sep; '''166''': 107205
A robust human norovirus replication model in zebrafish larvae. Description: Van Dycke, Jana, et al. A robust human norovirus replication model in zebrafish larvae. ''PLoS Pathog''. 2019 Sep; '''15''' (9):e1008009
Comparison of long-read sequencing technologies in the hybrid assembly of complex bacterial genomes. Description: De Maio, Nicola, et al. Comparison of long-read sequencing technologies in the hybrid assembly of complex bacterial genomes. ''Microb Genom''. 2019 Sep; '''5''' (9):
Endangered wild salmon infected by newly discovered viruses. Description: Mordecai, Gideon J, et al. Endangered wild salmon infected by newly discovered viruses. ''Elife''. 2019 Sep 3; '''8''':
Exploring the diversity of Poaceae-infecting mastreviruses on Reunion Island using a viral metagenomics-based approach. Description: Claverie, Sohini, et al. Exploring the diversity of Poaceae-infecting mastreviruses on Reunion Island using a viral metagenomics-based approach. ''Sci Rep''. 2019 Sep 3; '''9''' (1):12716
Arsenic mobilization in a high arsenic groundwater revealed by metagenomic and Geochip analyses. Description: Jiang, Zhou, et al. Arsenic mobilization in a high arsenic groundwater revealed by metagenomic and Geochip analyses. ''Sci Rep''. 2019 Sep 10; '''9''' (1):12972
Enlargement of a Modular System-Synthesis and Characterization of an s-Triazine-Based Carboxylic Acid Ester Bearing a Galactopyranosyl Moiety and an Enormous Boron Load. Description: Kellert, Martin, et al. Enlargement of a Modular System-Synthesis and Characterization of an s-Triazine-Based Carboxylic Acid Ester Bearing a Galactopyranosyl Moiety and an Enormous Boron Load. ''Molecules''. 2019 Sep 10; '''24''' (18):
High-Throughput Sequencing-Based Investigation of Viruses in Human Cancers by Multienrichment Approach. Description: Mollerup, Sarah, et al. High-Throughput Sequencing-Based Investigation of Viruses in Human Cancers by Multienrichment Approach. ''J Infect Dis''. 2019 Sep 13; '''220''' (8):1312-1324
Comparative analysis of amplicon and metagenomic sequencing methods reveals key features in the evolution of animal metaorganisms. Description: Rausch, Philipp, et al. Comparative analysis of amplicon and metagenomic sequencing methods reveals key features in the evolution of animal metaorganisms. ''Microbiome''. 2019 Sep 14; '''7''' (1):133
Identification of a novel orally bioavailable ERK5 inhibitor with selectivity over p38alpha and BRD4. Description: Myers, Stephanie M, et al. Identification of a novel orally bioavailable ERK5 inhibitor with selectivity over p38alpha and BRD4. ''Eur J Med Chem''. 2019 Sep 15; '''178''': 530-543
Genomic and Seasonal Variations among Aquatic Phages Infecting the Baltic Sea Gammaproteobacterium Rheinheimera sp. Strain BAL341. Description: Nilsson, E, et al. Genomic and Seasonal Variations among Aquatic Phages Infecting the Baltic Sea Gammaproteobacterium Rheinheimera sp. Strain BAL341. ''Appl Environ Microbiol''. 2019 Sep 15; '''85''' (18):
Metaviromics Reveals Unknown Viral Diversity in the Biting Midge Culicoides impunctatus. Description: Modha, Sejal, et al. Metaviromics Reveals Unknown Viral Diversity in the Biting Midge Culicoides impunctatus. ''Viruses''. 2019 Sep 17; '''11''' (9):
Distinct impact of antibiotics on the gut microbiome and resistome: a longitudinal multicenter cohort study. Description: Willmann, Matthias, et al. Distinct impact of antibiotics on the gut microbiome and resistome: a longitudinal multicenter cohort study. ''BMC Biol''. 2019 Sep 18; '''17''' (1):76
Active Fungal Communities in Asymptomatic Eucalyptus grandis Stems Differ between a Susceptible and Resistant Clone. Description: Messal, Mandy, et al. Active Fungal Communities in Asymptomatic Eucalyptus grandis Stems Differ between a Susceptible and Resistant Clone. ''Microorganisms''. 2019 Sep 20; '''7''' (10):
Effects of Essential Oil Citral on the Growth, Mycotoxin Biosynthesis and Transcriptomic Profile of Alternaria alternata. Description: Wang, Liuqing, et al. Effects of Essential Oil Citral on the Growth, Mycotoxin Biosynthesis and Transcriptomic Profile of Alternaria alternata. ''Toxins (Basel)''. 2019 Sep 20; '''11''' (10):
Molecular Identification of a Novel Hantavirus in Malaysian Bronze Tube-Nosed Bats (Murina aenea). Description: Zana, Brigitta, et al. Molecular Identification of a Novel Hantavirus in Malaysian Bronze Tube-Nosed Bats (Murina aenea). ''Viruses''. 2019 Sep 21; '''11''' (10):
Extra-axonal restricted diffusion as an in-vivo marker of reactive microglia. Description: Taquet, Maxime, et al. Extra-axonal restricted diffusion as an in-vivo marker of reactive microglia. ''Sci Rep''. 2019 Sep 25; '''9''' (1):13874
The fecal resistome of dairy cattle is associated with diet during nursing. Description: Liu, Jinxin, et al. The fecal resistome of dairy cattle is associated with diet during nursing. ''Nat Commun''. 2019 Sep 27; '''10''' (1):4406
Trinuclear Oxo-Titanium Clusters: Synthesis, Structure, and Photocatalytic Activity. Description: Janek, Maciej, et al. Trinuclear Oxo-Titanium Clusters: Synthesis, Structure, and Photocatalytic Activity. ''Materials (Basel)''. 2019 Sep 29; '''12''' (19):
De Novo assembly and characterisation of the greentail prawn (Metapenaeus bennettae) hepatopancreas transcriptome - identification of stress response and detoxification transcripts. Description: Armstrong, Emily K, et al. De Novo assembly and characterisation of the greentail prawn (Metapenaeus bennettae) hepatopancreas transcriptome - identification of stress response and detoxification transcripts. ''Mar Genomics''. 2019 Oct; '''47''': 100677
Microbial Metabolism Modulates Antibiotic Susceptibility within the Murine Gut Microbiome. Description: Cabral, Damien J, et al. Microbial Metabolism Modulates Antibiotic Susceptibility within the Murine Gut Microbiome. ''Cell Metab''. 2019 Oct 1; '''30''' (4):800-823.e7
Advances and Applications in the Quest for Orthologs. Description: Glover, Natasha, et al. Advances and Applications in the Quest for Orthologs. ''Mol Biol Evol''. 2019 Oct 1; '''36''' (10):2157-2164
A high-quality genome assembly from a single, field-collected spotted lanternfly (Lycorma delicatula) using the PacBio Sequel II system. Description: Kingan, Sarah B, et al. A high-quality genome assembly from a single, field-collected spotted lanternfly (Lycorma delicatula) using the PacBio Sequel II system. ''Gigascience''. 2019 Oct 1; '''8''' (10):
Ancestral reconstruction of protein interaction networks. Description: Liebeskind, Benjamin J, et al. Ancestral reconstruction of protein interaction networks. ''PLoS Comput Biol''. 2019 Oct; '''15''' (10):e1007396
Diverse hydrogen production and consumption pathways influence methane production in ruminants. Description: Greening, Chris, et al. Diverse hydrogen production and consumption pathways influence methane production in ruminants. ''ISME J''. 2019 Oct; '''13''' (10):2617-2632
Filovirus-reactive antibodies in humans and bats in Northeast India imply zoonotic spillover. Description: Dovih, Pilot, et al. Filovirus-reactive antibodies in humans and bats in Northeast India imply zoonotic spillover. ''PLoS Negl Trop Dis''. 2019 Oct; '''13''' (10):e0007733
Histological and diffusion-weighted magnetic resonance imaging data from normal and degenerated optic nerve and chiasm of the rat. Description: Narvaez-Delgado, Omar, et al. Histological and diffusion-weighted magnetic resonance imaging data from normal and degenerated optic nerve and chiasm of the rat. ''Data Brief''. 2019 Oct; '''26''': 104399
In Vitro Activity of Foeniculum vulgare and Its Main Essential Oil Component Trans-Anethole on Trichomonas vaginalis. Description: Karami, Faezeh, et al. In Vitro Activity of Foeniculum vulgare and Its Main Essential Oil Component Trans-Anethole on Trichomonas vaginalis. ''Iran J Parasitol''. 2019 Oct-Dec; '''14''' (4):631-638
Nephromyces Represents a Diverse and Novel Lineage of the Apicomplexa That Has Retained Apicoplasts. Description: Munoz-Gomez, Sergio A, et al. Nephromyces Represents a Diverse and Novel Lineage of the Apicomplexa That Has Retained Apicoplasts. ''Genome Biol Evol''. 2019 Oct 1; '''11''' (10):2727-2740
Feasibility of Standardized Human Milk Collection in Neonatal Care Units. Description: Galante, Laura, et al. Feasibility of Standardized Human Milk Collection in Neonatal Care Units. ''Sci Rep''. 2019 Oct 4; '''9''' (1):14343
Genomic Insights into the Fungal Lignocellulolytic Machinery of Flammulina rossica. Description: Park, Young-Jin, et al. Genomic Insights into the Fungal Lignocellulolytic Machinery of Flammulina rossica. ''Microorganisms''. 2019 Oct 8; '''7''' (10):
A Diverse Repertoire of Exopolysaccharide Biosynthesis Gene Clusters in Lactobacillus Revealed by Comparative Analysis in 106 Sequenced Genomes. Description: Deo, Dipti, et al. A Diverse Repertoire of Exopolysaccharide Biosynthesis Gene Clusters in Lactobacillus Revealed by Comparative Analysis in 106 Sequenced Genomes. ''Microorganisms''. 2019 Oct 11; '''7''' (10):
Study on cyanidin metabolism in petals of pink-flowered strawberry based on transcriptome sequencing and metabolite analysis. Description: Xue, Li, et al. Study on cyanidin metabolism in petals of pink-flowered strawberry based on transcriptome sequencing and metabolite analysis. ''BMC Plant Biol''. 2019 Oct 14; '''19''' (1):423
Insights into the Bacterial Profiles and Resistome Structures Following the Severe 2018 Flood in Kerala, South India. Description: Jaya Divakaran, Soumya, et al. Insights into the Bacterial Profiles and Resistome Structures Following the Severe 2018 Flood in Kerala, South India. ''Microorganisms''. 2019 Oct 19; '''7''' (10):
High Diversity and Novel Enteric Viruses in Fecal Viromes of Healthy Wild and Captive Thai Cynomolgus Macaques (Macaca fascicularis). Description: Sawaswong, Vorthon, et al. High Diversity and Novel Enteric Viruses in Fecal Viromes of Healthy Wild and Captive Thai Cynomolgus Macaques (Macaca fascicularis). ''Viruses''. 2019 Oct 22; '''11''' (10):
Robust taxonomic classification of uncharted microbial sequences and bins with CAT and BAT. Description: von Meijenfeldt, F A Bastiaan, et al. Robust taxonomic classification of uncharted microbial sequences and bins with CAT and BAT. ''Genome Biol''. 2019 Oct 22; '''20''' (1):217
The composition and functional protein subsystems of the human nasal microbiome in granulomatosis with polyangiitis: a pilot study. Description: Wagner, Josef, et al. The composition and functional protein subsystems of the human nasal microbiome in granulomatosis with polyangiitis: a pilot study. ''Microbiome''. 2019 Oct 22; '''7''' (1):137
Ecological specificity of the metagenome in a set of lower termite species supports contribution of the microbiome to adaptation of the host. Description: Waidele, Lena, et al. Ecological specificity of the metagenome in a set of lower termite species supports contribution of the microbiome to adaptation of the host. ''Anim Microbiome''. 2019 Oct 24; '''1''' (1):13
Generation and Characterization of a Mouse-Adapted Makona Variant of Ebola Virus. Description: Chan, Mable, et al. Generation and Characterization of a Mouse-Adapted Makona Variant of Ebola Virus. ''Viruses''. 2019 Oct 26; '''11''' (11):
Anti-inflammatory Gut Microbial Pathways Are Decreased During Crohn's Disease Exacerbations. Description: Klaassen, Marjolein A Y, et al. Anti-inflammatory Gut Microbial Pathways Are Decreased During Crohn's Disease Exacerbations. ''J Crohns Colitis''. 2019 Oct 28; '''13''' (11):1439-1449
Multi-Tissue Transcriptomes Yield Information on High-Altitude Adaptation and Sex-Determination in Scutiger cf. sikimmensis. Description: Hofmann, Sylvia, et al. Multi-Tissue Transcriptomes Yield Information on High-Altitude Adaptation and Sex-Determination in Scutiger cf. sikimmensis. ''Genes (Basel)''. 2019 Oct 31; '''10''' (11):
Theabrownin from Pu-erh tea attenuates hypercholesterolemia via modulation of gut microbiota and bile acid metabolism. Description: Huang, Fengjie, et al. Theabrownin from Pu-erh tea attenuates hypercholesterolemia via modulation of gut microbiota and bile acid metabolism. ''Nat Commun''. 2019 Oct 31; '''10''' (1):4971
The mycovirome of a fungal collection from the sea cucumber Holothuria polii. Description: Nerva, L, et al. The mycovirome of a fungal collection from the sea cucumber Holothuria polii. ''Virus Res''. 2019 Nov; '''273''': 197737
Atmospheric carbon monoxide oxidation is a widespread mechanism supporting microbial survival. Description: Cordero, Paul R F, et al. Atmospheric carbon monoxide oxidation is a widespread mechanism supporting microbial survival. ''ISME J''. 2019 Nov; '''13''' (11):2868-2881
Genomic dissection of an extended phenotype: Oak galling by a cynipid gall wasp. Description: Hearn, Jack, et al. Genomic dissection of an extended phenotype: Oak galling by a cynipid gall wasp. ''PLoS Genet''. 2019 Nov; '''15''' (11):e1008398
In marine Bacteroidetes the bulk of glycan degradation during algae blooms is mediated by few clades using a restricted set of genes. Description: Kruger, Karen, et al. In marine Bacteroidetes the bulk of glycan degradation during algae blooms is mediated by few clades using a restricted set of genes. ''ISME J''. 2019 Nov; '''13''' (11):2800-2816
Prevalence and proliferation of antibiotic resistance genes in the subtropical mangrove wetland ecosystem of South China Sea. Description: Zhao, Huaxian, et al. Prevalence and proliferation of antibiotic resistance genes in the subtropical mangrove wetland ecosystem of South China Sea. ''Microbiologyopen''. 2019 Nov; '''8''' (11):e871
Crystal structure, vibrational and optic properties of 2-N-methylamino-3-methylpyridine N-oxide - Its X-ray and spectroscopic studies as well as DFT quantum chemical calculations. Description: Bryndal, I, et al. Crystal structure, vibrational and optic properties of 2-N-methylamino-3-methylpyridine N-oxide - Its X-ray and spectroscopic studies as well as DFT quantum chemical calculations. ''J Mol Struct''. 2019 Nov 5; '''1195''': 208-219
Mash Screen: high-throughput sequence containment estimation for genome discovery. Description: Ondov, Brian D, et al. Mash Screen: high-throughput sequence containment estimation for genome discovery. ''Genome Biol''. 2019 Nov 5; '''20''' (1):232
Trends of Microdiversity Reveal Depth-Dependent Evolutionary Strategies of Viruses in the Mediterranean. Description: Coutinho, Felipe Hernandes, et al. Trends of Microdiversity Reveal Depth-Dependent Evolutionary Strategies of Viruses in the Mediterranean. ''mSystems''. 2019 Nov 5; '''4''' (6):
Viromics Reveal a Number of Novel RNA Viruses in Swedish Mosquitoes. Description: Ohlund, Pontus, et al. Viromics Reveal a Number of Novel RNA Viruses in Swedish Mosquitoes. ''Viruses''. 2019 Nov 5; '''11''' (11):
Reduced microbial potential for the degradation of phenolic compounds in the rhizosphere of apple plantlets grown in soils affected by replant disease. Description: Radl, Viviane, et al. Reduced microbial potential for the degradation of phenolic compounds in the rhizosphere of apple plantlets grown in soils affected by replant disease. ''Environ Microbiome''. 2019 Nov 7; '''14''' (1):8
Transcriptomic analysis reveals flavonoid biosynthesis of Syringa oblata Lindl. in response to different light intensity. Description: Liu, Yan-Yan, et al. Transcriptomic analysis reveals flavonoid biosynthesis of Syringa oblata Lindl. in response to different light intensity. ''BMC Plant Biol''. 2019 Nov 11; '''19''' (1):487
Transcriptome responses to different herbivores reveal differences in defense strategies between populations of Eruca sativa. Description: Ogran, Ariel, et al. Transcriptome responses to different herbivores reveal differences in defense strategies between populations of Eruca sativa. ''BMC Genomics''. 2019 Nov 12; '''20''' (1):843
Transcriptomic Signatures Predict Regulators of Drug Synergy and Clinical Regimen Efficacy against Tuberculosis. Description: Ma, Shuyi, et al. Transcriptomic Signatures Predict Regulators of Drug Synergy and Clinical Regimen Efficacy against Tuberculosis. ''MBio''. 2019 Nov 12; '''10''' (6):
The Prevotella copri Complex Comprises Four Distinct Clades Underrepresented in Westernized Populations. Description: Tett, Adrian, et al. The Prevotella copri Complex Comprises Four Distinct Clades Underrepresented in Westernized Populations. ''Cell Host Microbe''. 2019 Nov 13; '''26''' (5):666-679.e7
OrthoFinder: phylogenetic orthology inference for comparative genomics. Description: Emms, David M, et al. OrthoFinder: phylogenetic orthology inference for comparative genomics. ''Genome Biol''. 2019 Nov 14; '''20''' (1):238
Transcriptomic analysis of alpha-synuclein knockdown after T3 spinal cord injury in rats. Description: Zeng, Hong, et al. Transcriptomic analysis of alpha-synuclein knockdown after T3 spinal cord injury in rats. ''BMC Genomics''. 2019 Nov 14; '''20''' (1):851
Candidate genes for grape white rot resistance based on SMRT and Illumina sequencing. Description: Su, Kai, et al. Candidate genes for grape white rot resistance based on SMRT and Illumina sequencing. ''BMC Plant Biol''. 2019 Nov 15; '''19''' (1):501
Didelphis albiventris: an overview of unprecedented transcriptome sequencing of the white-eared opossum. Description: Dos Santos, Iria Gabriela Dias, et al. Didelphis albiventris: an overview of unprecedented transcriptome sequencing of the white-eared opossum. ''BMC Genomics''. 2019 Nov 15; '''20''' (1):866
Enriching Human Interactome with Functional Mutations to Detect High-Impact Network Modules Underlying Complex Diseases. Description: Cui, Hongzhu, et al. Enriching Human Interactome with Functional Mutations to Detect High-Impact Network Modules Underlying Complex Diseases. ''Genes (Basel)''. 2019 Nov 15; '''10''' (11):
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi. Description: Li, Yuanning, et al. Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi. ''BMC Biol''. 2019 Nov 18; '''17''' (1):91
Evolution of BACON Domain Tandem Repeats in crAssphage and Novel Gut Bacteriophage Lineages. Description: Jonge, Patrick A de, et al. Evolution of BACON Domain Tandem Repeats in crAssphage and Novel Gut Bacteriophage Lineages. ''Viruses''. 2019 Nov 21; '''11''' (12):
Modification of the genome topology network and its application to the comparison of group B Streptococcus genomes. Description: Deng, Xiao, et al. Modification of the genome topology network and its application to the comparison of group B Streptococcus genomes. ''BMC Genomics''. 2019 Nov 21; '''20''' (1):886
Schizosaccharomyces pombe can Reduce Acetic Acid Produced by Baijiu Spontaneous Fermentation Microbiota. Description: Song, Zhewei, et al. Schizosaccharomyces pombe can Reduce Acetic Acid Produced by Baijiu Spontaneous Fermentation Microbiota. ''Microorganisms''. 2019 Nov 22; '''7''' (12):
Complete genome sequence of Sphingomonas paucimobilis AIMST S2, a xenobiotic-degrading bacterium. Description: Ravintheran, Suganniiya K, et al. Complete genome sequence of Sphingomonas paucimobilis AIMST S2, a xenobiotic-degrading bacterium. ''Sci Data''. 2019 Nov 25; '''6''' (1):280
Gut-derived Enterococcus faecium from ulcerative colitis patients promotes colitis in a genetically susceptible mouse host. Description: Seishima, Jun, et al. Gut-derived Enterococcus faecium from ulcerative colitis patients promotes colitis in a genetically susceptible mouse host. ''Genome Biol''. 2019 Nov 25; '''20''' (1):252
Targeted metagenomic recovery of four divergent viruses reveals shared and distinctive characteristics of giant viruses of marine eukaryotes. Description: Needham, David M, et al. Targeted metagenomic recovery of four divergent viruses reveals shared and distinctive characteristics of giant viruses of marine eukaryotes. ''Philos Trans R Soc Lond B Biol Sci''. 2019 Nov 25; '''374''' (1786):20190086
Metagenomics of Atacama Lithobiontic Extremophile Life Unveils Highlights on Fungal Communities, Biogeochemical Cycles and Carbohydrate-Active Enzymes. Description: Gomez-Silva, Benito, et al. Metagenomics of Atacama Lithobiontic Extremophile Life Unveils Highlights on Fungal Communities, Biogeochemical Cycles and Carbohydrate-Active Enzymes. ''Microorganisms''. 2019 Nov 27; '''7''' (12):
Single-molecule real-time sequencing facilitates the analysis of transcripts and splice isoforms of anthers in Chinese cabbage (Brassica rapa L. ssp. pekinensis). Description: Tan, Chong, et al. Single-molecule real-time sequencing facilitates the analysis of transcripts and splice isoforms of anthers in Chinese cabbage (Brassica rapa L. ssp. pekinensis). ''BMC Plant Biol''. 2019 Nov 27; '''19''' (1):517
Variations in microbial community structure and functional gene expression in bio-treatment processes with odorous pollutants. Description: Li, Weidong, et al. Variations in microbial community structure and functional gene expression in bio-treatment processes with odorous pollutants. ''Sci Rep''. 2019 Nov 28; '''9''' (1):17870
Comparative Genomics Reveals Metabolic Specificity of Endozoicomonas Isolated from a Marine Sponge and the Genomic Repertoire for Host-Bacteria Symbioses. Description: Alex, Anoop, et al. Comparative Genomics Reveals Metabolic Specificity of Endozoicomonas Isolated from a Marine Sponge and the Genomic Repertoire for Host-Bacteria Symbioses. ''Microorganisms''. 2019 Nov 30; '''7''' (12):
Complete genome sequencing of Shigella sp. PAMC 28760: Identification of CAZyme genes and analysis of their potential role in glycogen metabolism for cold survival adaptation. Description: Han, So-Ra, et al. Complete genome sequencing of Shigella sp. PAMC 28760: Identification of CAZyme genes and analysis of their potential role in glycogen metabolism for cold survival adaptation. ''Microb Pathog''. 2019 Dec; '''137''': 103759
Associations between HbA1c and continuous glucose monitoring-derived glycaemic variables. Description: Hirsch, I B, et al. Associations between HbA1c and continuous glucose monitoring-derived glycaemic variables. ''Diabet Med''. 2019 Dec; '''36''' (12):1637-1642
Cooking shapes the structure and function of the gut microbiome. Description: Carmody, Rachel N, et al. Cooking shapes the structure and function of the gut microbiome. ''Nat Microbiol''. 2019 Dec; '''4''' (12):2052-2063
Crystal structures of three cyclohexane-based gamma-spirolactams: determination of configurations and conformations. Description: Krueger, Tobias, et al. Crystal structures of three cyclohexane-based gamma-spirolactams: determination of configurations and conformations. ''BMC Chem''. 2019 Dec; '''13''' (1):69
Gut bacteria responding to dietary change encode sialidases that exhibit preference for red meat-associated carbohydrates. Description: Zaramela, Livia S, et al. Gut bacteria responding to dietary change encode sialidases that exhibit preference for red meat-associated carbohydrates. ''Nat Microbiol''. 2019 Dec; '''4''' (12):2082-2089
Phylogenetic, genomic, and biogeographic characterization of a novel and ubiquitous marine invertebrate-associated Rickettsiales parasite, Candidatus Aquarickettsia rohweri, gen. nov., sp. nov. Description: Klinges, J Grace, et al. Phylogenetic, genomic, and biogeographic characterization of a novel and ubiquitous marine invertebrate-associated Rickettsiales parasite, Candidatus Aquarickettsia rohweri, gen. nov., sp. nov. ''ISME J''. 2019 Dec; '''13''' (12):2938-2953
Intestinal microbiota domination under extreme selective pressures characterized by metagenomic read cloud sequencing and assembly. Description: Kang, Joyce B, et al. Intestinal microbiota domination under extreme selective pressures characterized by metagenomic read cloud sequencing and assembly. ''BMC Bioinformatics''. 2019 Dec 2; '''20''' (Suppl 16):585
Natural Infection of Aedes aegypti by Chikungunya and Dengue type 2 Virus in a Transition Area of North-Northeast Brazil. Description: Aragao, Carine Fortes, et al. Natural Infection of Aedes aegypti by Chikungunya and Dengue type 2 Virus in a Transition Area of North-Northeast Brazil. ''Viruses''. 2019 Dec 5; '''11''' (12):
Assessing the performance of different approaches for functional and taxonomic annotation of metagenomes. Description: Tamames, Javier, et al. Assessing the performance of different approaches for functional and taxonomic annotation of metagenomes. ''BMC Genomics''. 2019 Dec 10; '''20''' (1):960
Duration of Persistent Atrial Fibrillation Is Associated with Alterations in Human Gut Microbiota and Metabolic Phenotypes. Description: Zuo, Kun, et al. Duration of Persistent Atrial Fibrillation Is Associated with Alterations in Human Gut Microbiota and Metabolic Phenotypes. ''mSystems''. 2019 Dec 10; '''4''' (6):
Genome analysis of deep sea piezotolerant Nesiotobacter exalbescens COD22 and toluene degradation studies under high pressure condition. Description: A, Ganesh Kumar, et al. Genome analysis of deep sea piezotolerant Nesiotobacter exalbescens COD22 and toluene degradation studies under high pressure condition. ''Sci Rep''. 2019 Dec 10; '''9''' (1):18724
Investigation of Anti-Inflammatory Potential of N-Arylcinnamamide Derivatives. Description: Hosek, Jan, et al. Investigation of Anti-Inflammatory Potential of N-Arylcinnamamide Derivatives. ''Molecules''. 2019 Dec 11; '''24''' (24):
Novel insights into molecular mechanisms of Pseudourostyla cristata encystment using comparative transcriptomics. Description: Pan, Nan, et al. Novel insights into molecular mechanisms of Pseudourostyla cristata encystment using comparative transcriptomics. ''Sci Rep''. 2019 Dec 13; '''9''' (1):19109
Viral Diversity of Microbats within the South West Botanical Province of Western Australia. Description: Prada, Diana, et al. Viral Diversity of Microbats within the South West Botanical Province of Western Australia. ''Viruses''. 2019 Dec 13; '''11''' (12):
Characteristics of Wetting-Induced Bacteriophage Blooms in Biological Soil Crust. Description: Van Goethem, Marc W, et al. Characteristics of Wetting-Induced Bacteriophage Blooms in Biological Soil Crust. ''mBio''. 2019 Dec 17; '''10''' (6):
Metagenomic Insights into the Effects of Seasonal Temperature Variation on the Activities of Activated Sludge. Description: Ai, Chenbing, et al. Metagenomic Insights into the Effects of Seasonal Temperature Variation on the Activities of Activated Sludge. ''Microorganisms''. 2019 Dec 17; '''7''' (12):
Comparative Pangenomics of the Mammalian Gut Commensal Bifidobacterium longum. Description: Albert, Korin, et al. Comparative Pangenomics of the Mammalian Gut Commensal Bifidobacterium longum. ''Microorganisms''. 2019 Dec 18; '''8''' (1):
Metatranscriptomic Analysis of the Mouse Gut Microbiome Response to the Persistent Organic Pollutant 2,3,7,8-Tetrachlorodibenzofuran. Description: Nichols, Robert G, et al. Metatranscriptomic Analysis of the Mouse Gut Microbiome Response to the Persistent Organic Pollutant 2,3,7,8-Tetrachlorodibenzofuran. ''Metabolites''. 2019 Dec 18; '''10''' (1):
Complete genome sequences of Streptomyces spp. isolated from disease-suppressive soils. Description: Heinsch, Stephen C, et al. Complete genome sequences of Streptomyces spp. isolated from disease-suppressive soils. ''BMC Genomics''. 2019 Dec 19; '''20''' (1):994
The N'-Substituted Derivatives of 5-Chloro-3-Methylisothiazole-4-Carboxylic Acid Hydrazide with Antiproliferative Activity. Description: Jeskowiak, Izabela, et al. The N'-Substituted Derivatives of 5-Chloro-3-Methylisothiazole-4-Carboxylic Acid Hydrazide with Antiproliferative Activity. ''Molecules''. 2019 Dec 25; '''25''' (1):
Different transcriptional response between susceptible and resistant common carp (Cyprinus carpio) fish hints on the mechanism of CyHV-3 disease resistance. Description: Tadmor-Levi, Roni, et al. Different transcriptional response between susceptible and resistant common carp (Cyprinus carpio) fish hints on the mechanism of CyHV-3 disease resistance. ''BMC Genomics''. 2019 Dec 26; '''20''' (1):1019
Charting the diversity of uncultured viruses of Archaea and Bacteria. Description: Coutinho, F H, et al. Charting the diversity of uncultured viruses of Archaea and Bacteria. ''BMC Biol''. 2019 Dec 29; '''17''' (1):109
A Model of Hormonal Regulation of Stamen Abortion during Pre-Meiosis of Litsea cubeba. Description: Xu, Zilong, et al. A Model of Hormonal Regulation of Stamen Abortion during Pre-Meiosis of Litsea cubeba. ''Genes (Basel)''. 2019 Dec 31; '''11''' (1):
Novel Viruses Found in Antricola Ticks Collected in Bat Caves in the Western Amazonia of Brazil. Description: Blomstrom, Anne-Lie, et al. Novel Viruses Found in Antricola Ticks Collected in Bat Caves in the Western Amazonia of Brazil. ''Viruses''. 2019 Dec 31; '''12''' (1):
A Metagenome-Wide Association Study of Gut Microbiome in Patients With Multiple Sclerosis Revealed Novel Disease Pathology. Description: Kishikawa, Toshihiro, et al. A Metagenome-Wide Association Study of Gut Microbiome in Patients With Multiple Sclerosis Revealed Novel Disease Pathology. ''Front Cell Infect Microbiol''. 2020; '''10''': 585973
A Novel Family of Acinetobacter Mega-Plasmids Are Disseminating Multi-Drug Resistance Across the Globe While Acquiring Location-Specific Accessory Genes. Description: Ghaly, Timothy M, et al. A Novel Family of Acinetobacter Mega-Plasmids Are Disseminating Multi-Drug Resistance Across the Globe While Acquiring Location-Specific Accessory Genes. ''Front Microbiol''. 2020; '''11''': 605952
Assessing the Risk of Transfer of Microorganisms at the International Space Station Due to Cargo Delivery by Commercial Resupply Vehicles. Description: Mhatre, Snehit, et al. Assessing the Risk of Transfer of Microorganisms at the International Space Station Due to Cargo Delivery by Commercial Resupply Vehicles. ''Front Microbiol''. 2020; '''11''': 566412
Barley Anther and Meiocyte Transcriptome Dynamics in Meiotic Prophase I. Description: Barakate, Abdellah, et al. Barley Anther and Meiocyte Transcriptome Dynamics in Meiotic Prophase I. ''Front Plant Sci''. 2020; '''11''': 619404
Diagnostic Sequences That Distinguish M. avium Subspecies Strains. Description: Bannantine, John P, et al. Diagnostic Sequences That Distinguish M. avium Subspecies Strains. ''Front Vet Sci''. 2020; '''7''': 620094
Diversity and Genomic Characterization of a Novel Parvarchaeota Family in Acid Mine Drainage Sediments. Description: Luo, Zhen-Hao, et al. Diversity and Genomic Characterization of a Novel Parvarchaeota Family in Acid Mine Drainage Sediments. ''Front Microbiol''. 2020; '''11''': 612257
Functional Gene Expression in Shark Bay Hypersaline Microbial Mats: Adaptive Responses. Description: Campbell, Matthew A, et al. Functional Gene Expression in Shark Bay Hypersaline Microbial Mats: Adaptive Responses. ''Front Microbiol''. 2020; '''11''': 560336
Functional Seasonality of Free-Living and Particle-Associated Prokaryotic Communities in the Coastal Adriatic Sea. Description: Steiner, Paul A, et al. Functional Seasonality of Free-Living and Particle-Associated Prokaryotic Communities in the Coastal Adriatic Sea. ''Front Microbiol''. 2020; '''11''': 584222
Function Analysis of P450 and GST Genes to Imidacloprid in Aphis craccivora (Koch). Description: Yang, Yuan-Xue, et al. Function Analysis of P450 and GST Genes to Imidacloprid in Aphis craccivora (Koch). ''Front Physiol''. 2020; '''11''': 624287
Fungi.guru: Comparative genomic and transcriptomic resource for the fungi kingdom. Description: Lim, Jolyn Jia Jia, et al. Fungi.guru: Comparative genomic and transcriptomic resource for the fungi kingdom. ''Comput Struct Biotechnol J''. 2020; '''18''': 3788-3795
Genome-Wide Identification of Populus Malectin/Malectin-Like Domain-Containing Proteins and Expression Analyses Reveal Novel Candidates for Signaling and Regulation of Wood Development. Description: Kumar, Vikash, et al. Genome-Wide Identification of Populus Malectin/Malectin-Like Domain-Containing Proteins and Expression Analyses Reveal Novel Candidates for Signaling and Regulation of Wood Development. ''Front Plant Sci''. 2020; '''11''': 588846
Genomic analysis of a lignocellulose degrading strain from the underexplored genus Meridianimaribacter. Description: Lam, Ming Quan, et al. Genomic analysis of a lignocellulose degrading strain from the underexplored genus Meridianimaribacter. ''Genomics''. 2020 Jan; '''112''' (1):952-960
Genomic Insights of "Candidatus Nitrosocaldaceae" Based on Nine New Metagenome-Assembled Genomes, Including "Candidatus Nitrosothermus" Gen Nov. and Two New Species of "Candidatus Nitrosocaldus". Description: Luo, Zhen-Hao, et al. Genomic Insights of "Candidatus Nitrosocaldaceae" Based on Nine New Metagenome-Assembled Genomes, Including "Candidatus Nitrosothermus" Gen Nov. and Two New Species of "Candidatus Nitrosocaldus". ''Front Microbiol''. 2020; '''11''': 608832
Gut Microbiota and Metabolic Specificity in Ulcerative Colitis and Crohn's Disease. Description: Sankarasubramanian, Jagadesan, et al. Gut Microbiota and Metabolic Specificity in Ulcerative Colitis and Crohn's Disease. ''Front Med (Lausanne)''. 2020; '''7''': 606298
Gut Microbiota in Dholes During Estrus. Description: Wu, Xiaoyang, et al. Gut Microbiota in Dholes During Estrus. ''Front Microbiol''. 2020; '''11''': 575731
Identification of Chitinolytic Enzymes in Chitinolyticbacter meiyuanensis and Mechanism of Efficiently Hydrolyzing Chitin to N-Acetyl Glucosamine. Description: Zhang, Alei, et al. Identification of Chitinolytic Enzymes in Chitinolyticbacter meiyuanensis and Mechanism of Efficiently Hydrolyzing Chitin to N-Acetyl Glucosamine. ''Front Microbiol''. 2020; '''11''': 572053
In vitro and in vivo hypolipidemic properties of the aqueous extract of Spirulina platensis, cultivated in colored flasks under artificial illumination. Description: Al-Saman, Mahmoud A, et al. In vitro and in vivo hypolipidemic properties of the aqueous extract of Spirulina platensis, cultivated in colored flasks under artificial illumination. ''PeerJ''. 2020; '''8''': e10366
Metagenomic Insights Into the Microbial Assemblage Capable of Quorum Sensing and Quorum Quenching in Particulate Organic Matter in the Yellow Sea. Description: Su, Ying, et al. Metagenomic Insights Into the Microbial Assemblage Capable of Quorum Sensing and Quorum Quenching in Particulate Organic Matter in the Yellow Sea. ''Front Microbiol''. 2020; '''11''': 602010
Microbial Niche Diversification in the Galapagos Archipelago and Its Response to El Nino. Description: Gifford, Scott M, et al. Microbial Niche Diversification in the Galapagos Archipelago and Its Response to El Nino. ''Front Microbiol''. 2020; '''11''': 575194
Microbial Processing of Jellyfish Detritus in the Ocean. Description: Tinta, Tinkara, et al. Microbial Processing of Jellyfish Detritus in the Ocean. ''Front Microbiol''. 2020; '''11''': 590995
Nucleophilic substitution reactions of monofunctional nucleophilic reagents with cyclotriphosphazenes containing 2,2-dioxybiphenyl units. Description: TanriverdI ECIk, Esra, et al. Nucleophilic substitution reactions of monofunctional nucleophilic reagents with cyclotriphosphazenes containing 2,2-dioxybiphenyl units. ''Turk J Chem''. 2020; '''44''' (1):87-98
Peeling the Layers Away: The Genomic Characterization of Bacillus pumilus 64-1, an Isolate With Antimicrobial Activity From the Marine Sponge Plakina cyanorosea (Porifera, Homoscleromorpha). Description: Freitas-Silva, Jessyca, et al. Peeling the Layers Away: The Genomic Characterization of Bacillus pumilus 64-1, an Isolate With Antimicrobial Activity From the Marine Sponge Plakina cyanorosea (Porifera, Homoscleromorpha). ''Front Microbiol''. 2020; '''11''': 592735
Saccharibacteria as Organic Carbon Sinks in Hydrocarbon-Fueled Communities. Description: Figueroa-Gonzalez, Perla Abigail, et al. Saccharibacteria as Organic Carbon Sinks in Hydrocarbon-Fueled Communities. ''Front Microbiol''. 2020; '''11''': 587782
Survey of metaproteomics software tools for functional microbiome analysis. Description: Sajulga, Ray, et al. Survey of metaproteomics software tools for functional microbiome analysis. ''PLoS One''. 2020; '''15''' (11):e0241503
Synthesis, characterization and evaluation of antidengue activity of enantiomeric Schiff bases derived from S-substituted dithiocarbazate. Description: Maryam, Maqsood, et al. Synthesis, characterization and evaluation of antidengue activity of enantiomeric Schiff bases derived from S-substituted dithiocarbazate. ''Turk J Chem''. 2020; '''44''' (5):1395-1409
Synthesis of new cyclotriphosphazene derivatives bearing Schiff bases and their thermal and absorbance properties. Description: DoGan, Semih, et al. Synthesis of new cyclotriphosphazene derivatives bearing Schiff bases and their thermal and absorbance properties. ''Turk J Chem''. 2020; '''44''' (1):31-47
Testing the Two-Step Model of Plant Root Microbiome Acquisition Under Multiple Plant Species and Soil Sources. Description: Barajas, Hugo R, et al. Testing the Two-Step Model of Plant Root Microbiome Acquisition Under Multiple Plant Species and Soil Sources. ''Front Microbiol''. 2020; '''11''': 542742
The Isolate Caproiciproducens sp. 7D4C2 Produces n-Caproate at Mildly Acidic Conditions From Hexoses: Genome and rBOX Comparison With Related Strains and Chain-Elongating Bacteria. Description: Esquivel-Elizondo, Sofia, et al. The Isolate Caproiciproducens sp. 7D4C2 Produces n-Caproate at Mildly Acidic Conditions From Hexoses: Genome and rBOX Comparison With Related Strains and Chain-Elongating Bacteria. ''Front Microbiol''. 2020; '''11''': 594524
The PacBio Full-Length Transcriptome of the Tea Aphid as a Reference Resource. Description: Hong, Feng, et al. The PacBio Full-Length Transcriptome of the Tea Aphid as a Reference Resource. ''Front Genet''. 2020; '''11''': 558394
Transcriptome analysis of diploid and triploid Populus tomentosa. Description: Bian, Wen, et al. Transcriptome analysis of diploid and triploid Populus tomentosa. ''PeerJ''. 2020; '''8''': e10204
Virome Sequencing of the Human Intestinal Mucosal-Luminal Interface. Description: Yan, Austin, et al. Virome Sequencing of the Human Intestinal Mucosal-Luminal Interface. ''Front Cell Infect Microbiol''. 2020; '''10''': 582187
Viruses in unexplained encephalitis cases in American black bears (Ursus americanus). Description: Alex, Charles E, et al. Viruses in unexplained encephalitis cases in American black bears (Ursus americanus). ''PLoS One''. 2020; '''15''' (12):e0244056
Whole genome sequencing and genome annotation of the wild edible mushroom, Russula griseocarnosa. Description: Yu, Fei, et al. Whole genome sequencing and genome annotation of the wild edible mushroom, Russula griseocarnosa. ''Genomics''. 2020 Jan; '''112''' (1):603-614
Alterations of Gut Microbiome in Tibetan Patients With Coronary Heart Disease. Description: Liu, Fengyun, et al. Alterations of Gut Microbiome in Tibetan Patients With Coronary Heart Disease. ''Front Cell Infect Microbiol''. 2020; '''10''': 373
A new lineage of segmented RNA viruses infecting animals. Description: Obbard, Darren J, et al. A new lineage of segmented RNA viruses infecting animals. ''Virus Evol''. 2020 Jan; '''6''' (1):vez061
Aquatic and terrestrial cyanobacteria produce methane. Description: Bizic, M, et al. Aquatic and terrestrial cyanobacteria produce methane. ''Sci Adv''. 2020 Jan; '''6''' (3):eaax5343
Association of colitis with gut-microbiota dysbiosis in clathrin adapter AP-1B knockout mice. Description: Jangid, Aditi, et al. Association of colitis with gut-microbiota dysbiosis in clathrin adapter AP-1B knockout mice. ''PLoS One''. 2020; '''15''' (3):e0228358
A Systematic Bioinformatics Workflow With Meta-Analytics Identified Potential Pathogenic Factors of Alzheimer's Disease. Description: Yuen, Sze Chung, et al. A Systematic Bioinformatics Workflow With Meta-Analytics Identified Potential Pathogenic Factors of Alzheimer's Disease. ''Front Neurosci''. 2020; '''14''': 209
BarleyNet: A Network-Based Functional Omics Analysis Server for Cultivated Barley, Hordeum vulgare L. Description: Lee, Sungho, et al. BarleyNet: A Network-Based Functional Omics Analysis Server for Cultivated Barley, Hordeum vulgare L. ''Front Plant Sci''. 2020; '''11''': 98
Can We Use Functional Genetics to Predict the Fate of Nitrogen in Estuaries? Description: Raes, Eric J, et al. Can We Use Functional Genetics to Predict the Fate of Nitrogen in Estuaries? ''Front Microbiol''. 2020; '''11''': 1261
Characteristics and Functions of the Rumen Microbial Community of Cattle-Yak at Different Ages. Description: Sha, Yuzhu, et al. Characteristics and Functions of the Rumen Microbial Community of Cattle-Yak at Different Ages. ''Biomed Res Int''. 2020; '''2020''': 3482692
Characterization of an acid rock drainage microbiome and transcriptome at the Ely Copper Mine Superfund site. Description: Giddings, Lesley-Ann, et al. Characterization of an acid rock drainage microbiome and transcriptome at the Ely Copper Mine Superfund site. ''PLoS One''. 2020; '''15''' (8):e0237599
Characterization of a Novel Chromosomal Class C beta-Lactamase, YOC-1, and Comparative Genomics Analysis of a Multidrug Resistance Plasmid in Yokenella regensburgei W13. Description: Zhou, Danying, et al. Characterization of a Novel Chromosomal Class C beta-Lactamase, YOC-1, and Comparative Genomics Analysis of a Multidrug Resistance Plasmid in Yokenella regensburgei W13. ''Front Microbiol''. 2020; '''11''': 2021
Chromosome-scale assembly of the Kandelia obovata genome. Description: Hu, Min-Jie, et al. Chromosome-scale assembly of the Kandelia obovata genome. ''Hortic Res''. 2020; '''7''': 75
Co-expression clustering across flower development identifies modules for diverse floral forms in Achimenes (Gesneriaceae). Description: Roberts, Wade R, et al. Co-expression clustering across flower development identifies modules for diverse floral forms in Achimenes (Gesneriaceae). ''PeerJ''. 2020; '''8''': e8778
Comparative genomic analysis of Proteus spp. isolated from tree shrews indicated unexpectedly high genetic diversity. Description: Gu, Wenpeng, et al. Comparative genomic analysis of Proteus spp. isolated from tree shrews indicated unexpectedly high genetic diversity. ''PLoS One''. 2020; '''15''' (2):e0229125
Comparative transcriptome analyses in contrasting onion (Allium cepa L.) genotypes for drought stress. Description: Ghodke, Pranjali, et al. Comparative transcriptome analyses in contrasting onion (Allium cepa L.) genotypes for drought stress. ''PLoS One''. 2020; '''15''' (8):e0237457
Comparing Gut Microbiome in Mothers' Own Breast Milk- and Formula-Fed Moderate-Late Preterm Infants. Description: Wang, Ziyi, et al. Comparing Gut Microbiome in Mothers' Own Breast Milk- and Formula-Fed Moderate-Late Preterm Infants. ''Front Microbiol''. 2020; '''11''': 891
Complete Genome Sequencing and Transcriptome Analysis of Nitrogen Metabolism of Succinivibrio dextrinosolvens Strain Z6 Isolated From Dairy Cow Rumen. Description: Hailemariam, Samson, et al. Complete Genome Sequencing and Transcriptome Analysis of Nitrogen Metabolism of Succinivibrio dextrinosolvens Strain Z6 Isolated From Dairy Cow Rumen. ''Front Microbiol''. 2020; '''11''': 1826
Composition and function of rhizosphere microbiome of Panax notoginseng with discrepant yields. Description: Li, Mengzhi, et al. Composition and function of rhizosphere microbiome of Panax notoginseng with discrepant yields. ''Chin Med''. 2020; '''15''': 85
Composition of fecal microbiota in low-set rectal cancer patients treated with FOLFOX. Description: Li, Jing, et al. Composition of fecal microbiota in low-set rectal cancer patients treated with FOLFOX. ''Ther Adv Chronic Dis''. 2020; '''11''': 2040622320904293
Designing a Network Proximity-Based Drug Repurposing Strategy for COVID-19. Description: Stolfi, Paola, et al. Designing a Network Proximity-Based Drug Repurposing Strategy for COVID-19. ''Front Cell Dev Biol''. 2020; '''8''': 545089
Determining the Genetic Characteristics of Resistance and Virulence of the "Epidermidis Cluster Group" Through Pan-Genome Analysis. Description: Sun, Zhewei, et al. Determining the Genetic Characteristics of Resistance and Virulence of the "Epidermidis Cluster Group" Through Pan-Genome Analysis. ''Front Cell Infect Microbiol''. 2020; '''10''': 274
Distinctive Growth and Transcriptional Changes of the Diatom Seminavis robusta in Response to Quorum Sensing Related Compounds. Description: Stock, Frederike, et al. Distinctive Growth and Transcriptional Changes of the Diatom Seminavis robusta in Response to Quorum Sensing Related Compounds. ''Front Microbiol''. 2020; '''11''': 1240
Diverse Microbial Composition of Sourdoughs From Different Origins. Description: Comasio, Andrea, et al. Diverse Microbial Composition of Sourdoughs From Different Origins. ''Front Microbiol''. 2020; '''11''': 1212
Effects of Gut Microbiome and Short-Chain Fatty Acids (SCFAs) on Finishing Weight of Meat Rabbits. Description: Fang, Shaoming, et al. Effects of Gut Microbiome and Short-Chain Fatty Acids (SCFAs) on Finishing Weight of Meat Rabbits. ''Front Microbiol''. 2020; '''11''': 1835
Fast I(n)dentification of Pathogens in Neonates (FINDPATH-N): protocol for a prospective pilot cohort study of next-generation sequencing for pathogen identification in neonates with suspected sepsis. Description: Klowak, Jennifer Ann, et al. Fast I(n)dentification of Pathogens in Neonates (FINDPATH-N): protocol for a prospective pilot cohort study of next-generation sequencing for pathogen identification in neonates with suspected sepsis. ''BMJ Paediatr Open''. 2020; '''4''' (1):e000651
Functional dynamics of bacterial species in the mouse gut microbiome revealed by metagenomic and metatranscriptomic analyses. Description: Chung, Youn Wook, et al. Functional dynamics of bacterial species in the mouse gut microbiome revealed by metagenomic and metatranscriptomic analyses. ''PLoS One''. 2020; '''15''' (1):e0227886
Genome reconstruction of the non-culturable spinach downy mildew Peronospora effusa by metagenome filtering. Description: Klein, Joel, et al. Genome reconstruction of the non-culturable spinach downy mildew Peronospora effusa by metagenome filtering. ''PLoS One''. 2020; '''15''' (5):e0225808
Gonad-Specific Transcriptomes Reveal Differential Expression of Gene and miRNA Between Male and Female of the Discus Fish (Symphysodon aequifasciatus). Description: Fu, Yuanshuai, et al. Gonad-Specific Transcriptomes Reveal Differential Expression of Gene and miRNA Between Male and Female of the Discus Fish (Symphysodon aequifasciatus). ''Front Physiol''. 2020; '''11''': 754
GTDB: an integrated resource for glycosyltransferase sequences and annotations. Description: Zhou, Chenfen, et al. GTDB: an integrated resource for glycosyltransferase sequences and annotations. ''Database (Oxford)''. 2020 Jan 1; '''2020''':
Gut transcriptomic changes during hibernation in the greater horseshoe bat (Rhinolophus ferrumequinum). Description: Sun, Haijian, et al. Gut transcriptomic changes during hibernation in the greater horseshoe bat (Rhinolophus ferrumequinum). ''Front Zool''. 2020; '''17''': 21
High-pressure polymorphism in pyridine. Description: Giordano, Nico, et al. High-pressure polymorphism in pyridine. ''IUCrJ''. 2020 Jan 1; '''7''' (Pt 1):58-70
Hybrid de novo genome assembly of red gromwell (Lithospermum erythrorhizon) reveals evolutionary insight into shikonin biosynthesis. Description: Auber, Robert P, et al. Hybrid de novo genome assembly of red gromwell (Lithospermum erythrorhizon) reveals evolutionary insight into shikonin biosynthesis. ''Hortic Res''. 2020; '''7''': 82
In silico Proteomic Analysis Provides Insights Into Phylogenomics and Plant Biomass Deconstruction Potentials of the Tremelalles. Description: Aliyu, Habibu, et al. In silico Proteomic Analysis Provides Insights Into Phylogenomics and Plant Biomass Deconstruction Potentials of the Tremelalles. ''Front Bioeng Biotechnol''. 2020; '''8''': 226
Interactive Gene Expression Patterns of Susceptible and Resistant Lens ervoides Recombinant Inbred Lines and the Necrotroph Ascochyta lentis. Description: Cao, Zhe, et al. Interactive Gene Expression Patterns of Susceptible and Resistant Lens ervoides Recombinant Inbred Lines and the Necrotroph Ascochyta lentis. ''Front Microbiol''. 2020; '''11''': 1259
Isolation and sequence-based characterization of a koala symbiont: Lonepinella koalarum. Description: Dahlhausen, Katherine E, et al. Isolation and sequence-based characterization of a koala symbiont: Lonepinella koalarum. ''PeerJ''. 2020; '''8''': e10177
Isopod holobionts as promising models for lignocellulose degradation. Description: Bredon, Marius, et al. Isopod holobionts as promising models for lignocellulose degradation. ''Biotechnol Biofuels''. 2020; '''13''': 49
Labile Dissolved Organic Matter Compound Characteristics Select for Divergence in Marine Bacterial Activity and Transcription. Description: Pontiller, Benjamin, et al. Labile Dissolved Organic Matter Compound Characteristics Select for Divergence in Marine Bacterial Activity and Transcription. ''Front Microbiol''. 2020; '''11''': 588778
Life at the Frozen Limit: Microbial Carbon Metabolism Across a Late Pleistocene Permafrost Chronosequence. Description: Leewis, Mary-Cathrine, et al. Life at the Frozen Limit: Microbial Carbon Metabolism Across a Late Pleistocene Permafrost Chronosequence. ''Front Microbiol''. 2020; '''11''': 1753
Mechanism Study of the Protective Effects of Sodium Tanshinone IIA Sulfonate Against Atorvastatin-Induced Cerebral Hemorrhage in Zebrafish: Transcriptome Analysis. Description: Zhou, Zhong-Yan, et al. Mechanism Study of the Protective Effects of Sodium Tanshinone IIA Sulfonate Against Atorvastatin-Induced Cerebral Hemorrhage in Zebrafish: Transcriptome Analysis. ''Front Pharmacol''. 2020; '''11''': 551745
Metagenomic Insights Into the Cycling of Dimethylsulfoniopropionate and Related Molecules in the Eastern China Marginal Seas. Description: Song, Delei, et al. Metagenomic Insights Into the Cycling of Dimethylsulfoniopropionate and Related Molecules in the Eastern China Marginal Seas. ''Front Microbiol''. 2020; '''11''': 157
Metatranscriptomic Analysis Reveals Active Bacterial Communities in Diabetic Foot Infections. Description: Heravi, Fatemah Sadeghpour, et al. Metatranscriptomic Analysis Reveals Active Bacterial Communities in Diabetic Foot Infections. ''Front Microbiol''. 2020; '''11''': 1688
Metatranscriptomic Insights Into the Response of River Biofilm Communities to Ionic and Nano-Zinc Oxide Exposures. Description: Bergsveinson, Jordyn, et al. Metatranscriptomic Insights Into the Response of River Biofilm Communities to Ionic and Nano-Zinc Oxide Exposures. ''Front Microbiol''. 2020; '''11''': 267
Microbial signatures of protected and impacted Northern Caribbean reefs: changes from Cuba to the Florida Keys. Description: Weber, Laura, et al. Microbial signatures of protected and impacted Northern Caribbean reefs: changes from Cuba to the Florida Keys. ''Environ Microbiol''. 2020 Jan; '''22''' (1):499-519
Molecular analysis of population and De Novo transcriptome sequencing of Thai medaka, Oryzias minutillus (Teleostei: Adrianichthyidae). Description: Ngamniyom, Arin, et al. Molecular analysis of population and De Novo transcriptome sequencing of Thai medaka, Oryzias minutillus (Teleostei: Adrianichthyidae). ''Heliyon''. 2020 Jan; '''6''' (1):e03079
Morpho-Physiological and Genomic Evaluation of Juglans Species Reveals Regional Maladaptation to Cold Stress. Description: Ebrahimi, Aziz, et al. Morpho-Physiological and Genomic Evaluation of Juglans Species Reveals Regional Maladaptation to Cold Stress. ''Front Plant Sci''. 2020; '''11''': 229
Phylogenomic synteny network analyses reveal ancestral transpositions of auxin response factor genes in plants. Description: Gao, Bei, et al. Phylogenomic synteny network analyses reveal ancestral transpositions of auxin response factor genes in plants. ''Plant Methods''. 2020; '''16''': 70
Postnatal Gut Immunity and Microbiota Development Is Minimally Affected by Prenatal Inflammation in Preterm Pigs. Description: Pan, Xiaoyu, et al. Postnatal Gut Immunity and Microbiota Development Is Minimally Affected by Prenatal Inflammation in Preterm Pigs. ''Front Immunol''. 2020; '''11''': 420
Prediction of Antimicrobial Resistance in Gram-Negative Bacteria From Whole-Genome Sequencing Data. Description: Van Camp, Pieter-Jan, et al. Prediction of Antimicrobial Resistance in Gram-Negative Bacteria From Whole-Genome Sequencing Data. ''Front Microbiol''. 2020; '''11''': 1013
Quyushengxin Formula Causes Differences in Bacterial and Phage Composition in Ulcerative Colitis Patients. Description: Yang, Haojie, et al. Quyushengxin Formula Causes Differences in Bacterial and Phage Composition in Ulcerative Colitis Patients. ''Evid Based Complement Alternat Med''. 2020; '''2020''': 5859023
Reprogramming of the Developmental Program of Rhus javanica During Initial Stage of Gall Induction by Schlechtendalia chinensis. Description: Hirano, Tomoko, et al. Reprogramming of the Developmental Program of Rhus javanica During Initial Stage of Gall Induction by Schlechtendalia chinensis. ''Front Plant Sci''. 2020; '''11''': 471
Rumen Protozoa Play a Significant Role in Fungal Predation and Plant Carbohydrate Breakdown. Description: Williams, Cate L, et al. Rumen Protozoa Play a Significant Role in Fungal Predation and Plant Carbohydrate Breakdown. ''Front Microbiol''. 2020; '''11''': 720
Seasonal Variation and Sexual Dimorphism of the Microbiota in Wild Blue Sheep (Pseudois nayaur). Description: Zhu, Zhaoling, et al. Seasonal Variation and Sexual Dimorphism of the Microbiota in Wild Blue Sheep (Pseudois nayaur). ''Front Microbiol''. 2020; '''11''': 1260
Single Cell Genomics Reveals Viruses Consumed by Marine Protists. Description: Brown, Julia M, et al. Single Cell Genomics Reveals Viruses Consumed by Marine Protists. ''Front Microbiol''. 2020; '''11''': 524828
Site-Specific Conditions Change the Response of Bacterial Producers of Soil Structure-Stabilizing Agents Such as Exopolysaccharides and Lipopolysaccharides to Tillage Intensity. Description: Cania, Barbara, et al. Site-Specific Conditions Change the Response of Bacterial Producers of Soil Structure-Stabilizing Agents Such as Exopolysaccharides and Lipopolysaccharides to Tillage Intensity. ''Front Microbiol''. 2020; '''11''': 568
Succession of Gut Microbial Structure in Twin Giant Pandas During the Dietary Change Stage and Its Role in Polysaccharide Metabolism. Description: Zhan, Mingye, et al. Succession of Gut Microbial Structure in Twin Giant Pandas During the Dietary Change Stage and Its Role in Polysaccharide Metabolism. ''Front Microbiol''. 2020; '''11''': 551038
Symbiotic lifestyle triggers drastic changes in the gene expression of the algal endosymbiont Breviolum minutum (Symbiodiniaceae). Description: Maor-Landaw, Keren, et al. Symbiotic lifestyle triggers drastic changes in the gene expression of the algal endosymbiont Breviolum minutum (Symbiodiniaceae). ''Ecol Evol''. 2020 Jan; '''10''' (1):451-466
The DIAMOND Model: Deep Recurrent Neural Networks for Self-Organizing Robot Control. Description: Smith, Simon C, et al. The DIAMOND Model: Deep Recurrent Neural Networks for Self-Organizing Robot Control. ''Front Neurorobot''. 2020; '''14''': 62
The Genome of the Blind Soil-Dwelling and Ancestrally Wingless Dipluran Campodea augens: A Key Reference Hexapod for Studying the Emergence of Insect Innovations. Description: Manni, Mose, et al. The Genome of the Blind Soil-Dwelling and Ancestrally Wingless Dipluran Campodea augens: A Key Reference Hexapod for Studying the Emergence of Insect Innovations. ''Genome Biol Evol''. 2020 Jan 1; '''12''' (1):3534-3549
The Genome Sequence of Alpine Megacarpaea delavayi Identifies Species-Specific Whole-Genome Duplication. Description: Yang, Qiao, et al. The Genome Sequence of Alpine Megacarpaea delavayi Identifies Species-Specific Whole-Genome Duplication. ''Front Genet''. 2020; '''11''': 812
The genome, transcriptome, and proteome of the fish parasite Pomphorhynchus laevis (Acanthocephala). Description: Mauer, Katharina, et al. The genome, transcriptome, and proteome of the fish parasite Pomphorhynchus laevis (Acanthocephala). ''PLoS One''. 2020; '''15''' (6):e0232973
The Rhizosphere Microbiome of Mikania micrantha Provides Insight Into Adaptation and Invasion. Description: Yin, Lijuan, et al. The Rhizosphere Microbiome of Mikania micrantha Provides Insight Into Adaptation and Invasion. ''Front Microbiol''. 2020; '''11''': 1462
The whole body transcriptome of Coleophora obducta reveals important olfactory proteins. Description: Wang, Dongbai, et al. The whole body transcriptome of Coleophora obducta reveals important olfactory proteins. ''PeerJ''. 2020; '''8''': e8902
Time-Course RNAseq Reveals Exserohilum turcicum Effectors and Pathogenicity Determinants. Description: Human, Maria Petronella, et al. Time-Course RNAseq Reveals Exserohilum turcicum Effectors and Pathogenicity Determinants. ''Front Microbiol''. 2020; '''11''': 360
Transcriptomic Profiling of Various Developmental Stages of Aphis Aurantii to Provide a Genetic Resource for Gene Expression and SSR Analysis. Description: Hong, Feng, et al. Transcriptomic Profiling of Various Developmental Stages of Aphis Aurantii to Provide a Genetic Resource for Gene Expression and SSR Analysis. ''Front Physiol''. 2020; '''11''': 578939
Transient coating of gamma-Fe2O3 nanoparticles with glutamate for its delivery to and removal from brain nerve terminals. Description: Paliienko, Konstantin, et al. Transient coating of gamma-Fe2O3 nanoparticles with glutamate for its delivery to and removal from brain nerve terminals. ''Beilstein J Nanotechnol''. 2020; '''11''': 1381-1393
Ultrastructural and proapoptotic-like effects of kaempferol in Giardia duodenalis trophozoites and bioinformatics prediction of its potential protein target. Description: Arguello-Garcia, Raul, et al. Ultrastructural and proapoptotic-like effects of kaempferol in Giardia duodenalis trophozoites and bioinformatics prediction of its potential protein target. ''Mem Inst Oswaldo Cruz''. 2020; '''115''': e200127
Validating an Automated Nucleic Acid Extraction Device for Omics in Space Using Whole Cell Microbial Reference Standards. Description: Urbaniak, Camilla, et al. Validating an Automated Nucleic Acid Extraction Device for Omics in Space Using Whole Cell Microbial Reference Standards. ''Front Microbiol''. 2020; '''11''': 1909
VAMPr: VAriant Mapping and Prediction of antibiotic resistance via explainable features and machine learning. Description: Kim, Jiwoong, et al. VAMPr: VAriant Mapping and Prediction of antibiotic resistance via explainable features and machine learning. ''PLoS Comput Biol''. 2020 Jan; '''16''' (1):e1007511
Ciliary force-responsive striated fibers promote basal body connections and cortical interactions. Description: Soh, Adam W J, et al. Ciliary force-responsive striated fibers promote basal body connections and cortical interactions. ''J Cell Biol''. 2020 Jan 6; '''219''' (1):
Genome- and Community-Level Interaction Insights into Carbon Utilization and Element Cycling Functions of Hydrothermarchaeota in Hydrothermal Sediment. Description: Zhou, Zhichao, et al. Genome- and Community-Level Interaction Insights into Carbon Utilization and Element Cycling Functions of Hydrothermarchaeota in Hydrothermal Sediment. ''mSystems''. 2020 Jan 7; '''5''' (1):
Mobile resistome of human gut and pathogen drives anthropogenic bloom of antibiotic resistance. Description: Lee, Kihyun, et al. Mobile resistome of human gut and pathogen drives anthropogenic bloom of antibiotic resistance. ''Microbiome''. 2020 Jan 7; '''8''' (1):2
Comparative Genomics Analysis of Lactobacillus ruminis from Different Niches. Description: Wang, Shuo, et al. Comparative Genomics Analysis of Lactobacillus ruminis from Different Niches. ''Genes (Basel)''. 2020 Jan 8; '''11''' (1):
Evolutionary relationships among bifidobacteria and their hosts and environments. Description: Rodriguez, Cynthia I, et al. Evolutionary relationships among bifidobacteria and their hosts and environments. ''BMC Genomics''. 2020 Jan 8; '''21''' (1):26
Genetically engineered distal airway stem cell transplantation protects mice from pulmonary infection. Description: Zhou, Yue-Qing, et al. Genetically engineered distal airway stem cell transplantation protects mice from pulmonary infection. ''EMBO Mol Med''. 2020 Jan 9; '''12''' (1):e10233
The Structural and Magnetic Properties of Fe(II) and Co(II) Complexes with 2-(furan-2-yl)-5-pyridin-2-yl-1,3,4-oxadiazole. Description: Zoufaly, Pavel, et al. The Structural and Magnetic Properties of Fe(II) and Co(II) Complexes with 2-(furan-2-yl)-5-pyridin-2-yl-1,3,4-oxadiazole. ''Molecules''. 2020 Jan 9; '''25''' (2):
Development of novel nanoantibiotics using an outer membrane vesicle-based drug efflux mechanism. Description: Huang, Weiwei, et al. Development of novel nanoantibiotics using an outer membrane vesicle-based drug efflux mechanism. ''J Control Release''. 2020 Jan 10; '''317''': 1-22
Are viruses associated with disc herniation? A clinical case series. Description: Walker, B F, et al. Are viruses associated with disc herniation? A clinical case series. ''BMC Musculoskelet Disord''. 2020 Jan 14; '''21''' (1):27
Combined network pharmacology and virtual reverse pharmacology approaches for identification of potential targets to treat vascular dementia. Description: Lagunin, Alexey A, et al. Combined network pharmacology and virtual reverse pharmacology approaches for identification of potential targets to treat vascular dementia. ''Sci Rep''. 2020 Jan 14; '''10''' (1):257
Genome-resolved metagenomics analysis provides insights into the ecological role of Thaumarchaeota in the Amazon River and its plume. Description: Pinto, Otavio H B, et al. Genome-resolved metagenomics analysis provides insights into the ecological role of Thaumarchaeota in the Amazon River and its plume. ''BMC Microbiol''. 2020 Jan 15; '''20''' (1):13
Piphillin predicts metagenomic composition and dynamics from DADA2-corrected 16S rDNA sequences. Description: Narayan, Nicole R, et al. Piphillin predicts metagenomic composition and dynamics from DADA2-corrected 16S rDNA sequences. ''BMC Genomics''. 2020 Jan 17; '''21''' (1):56
Characterizing the microbiomes of Antarctic sponges: a functional metagenomic approach. Description: Moreno-Pino, Mario, et al. Characterizing the microbiomes of Antarctic sponges: a functional metagenomic approach. ''Sci Rep''. 2020 Jan 20; '''10''' (1):645
Conformational changes in Apolipoprotein N-acyltransferase (Lnt). Description: Wiseman, Benjamin, et al. Conformational changes in Apolipoprotein N-acyltransferase (Lnt). ''Sci Rep''. 2020 Jan 20; '''10''' (1):639
Identification of A Novel Papillomavirus Associated with Squamous Cell Carcinoma in A Domestic Cat. Description: Carrai, Maura, et al. Identification of A Novel Papillomavirus Associated with Squamous Cell Carcinoma in A Domestic Cat. ''Viruses''. 2020 Jan 20; '''12''' (1):
A sense of place: transcriptomics identifies environmental signatures in Cabernet Sauvignon berry skins in the late stages of ripening. Description: Cramer, Grant R, et al. A sense of place: transcriptomics identifies environmental signatures in Cabernet Sauvignon berry skins in the late stages of ripening. ''BMC Plant Biol''. 2020 Jan 28; '''20''' (1):41
Zwiesel bat banyangvirus, a potentially zoonotic Huaiyangshan banyangvirus (Formerly known as SFTS)-like banyangvirus in Northern bats from Germany. Description: Kohl, Claudia, et al. Zwiesel bat banyangvirus, a potentially zoonotic Huaiyangshan banyangvirus (Formerly known as SFTS)-like banyangvirus in Northern bats from Germany. ''Sci Rep''. 2020 Jan 28; '''10''' (1):1370
Diversity and Host Interactions Among Virulent and Temperate Baltic Sea Flavobacterium Phages. Description: Nilsson, Emelie, et al. Diversity and Host Interactions Among Virulent and Temperate Baltic Sea Flavobacterium Phages. ''Viruses''. 2020 Jan 30; '''12''' (2):
The Cannabis Proteome Draft Map Project. Description: Jenkins, Conor, et al. The Cannabis Proteome Draft Map Project. ''Int J Mol Sci''. 2020 Jan 31; '''21''' (3):
Clades of huge phages from across Earth's ecosystems. Description: Al-Shayeb, Basem, et al. Clades of huge phages from across Earth's ecosystems. ''Nature''. 2020 Feb; '''578''' (7795):425-431
Combining genomics and epidemiology to track mumps virus transmission in the United States. Description: Wohl, Shirlee, et al. Combining genomics and epidemiology to track mumps virus transmission in the United States. ''PLoS Biol''. 2020 Feb; '''18''' (2):e3000611
Genomes of early-diverging streptophyte algae shed light on plant terrestrialization. Description: Wang, Sibo, et al. Genomes of early-diverging streptophyte algae shed light on plant terrestrialization. ''Nat Plants''. 2020 Feb; '''6''' (2):95-106
Giant virus diversity and host interactions through global metagenomics. Description: Schulz, Frederik, et al. Giant virus diversity and host interactions through global metagenomics. ''Nature''. 2020 Feb; '''578''' (7795):432-436
Spatial and temporal axes impact ecology of the gut microbiome in juvenile European lobster (Homarus gammarus). Description: Holt, Corey C, et al. Spatial and temporal axes impact ecology of the gut microbiome in juvenile European lobster (Homarus gammarus). ''ISME J''. 2020 Feb; '''14''' (2):531-543
Syntheses of Dioxygenyl Salts by Photochemical Reactions in Liquid Anhydrous Hydrogen Fluoride: X-ray Crystal Structures of alpha- and beta-O2Sn2F9, O2Sn2F9.0.9HF, O2GeF5.HF, and O2[Hg(HF)]4(SbF6)9. Description: Mazej, Zoran, et al. Syntheses of Dioxygenyl Salts by Photochemical Reactions in Liquid Anhydrous Hydrogen Fluoride: X-ray Crystal Structures of alpha- and beta-O2Sn2F9, O2Sn2F9.0.9HF, O2GeF5.HF, and O2[Hg(HF)]4(SbF6)9. ''Inorg Chem''. 2020 Feb 3; '''59''' (3):2092-2103
De Novo Genome Assembly of Populus simonii Further Supports That Populus simonii and Populus trichocarpa Belong to Different Sections. Description: Wu, Hainan, et al. De Novo Genome Assembly of Populus simonii Further Supports That Populus simonii and Populus trichocarpa Belong to Different Sections. ''G3 (Bethesda)''. 2020 Feb 6; '''10''' (2):455-466
Comparative genomics applied to Mucor species with different lifestyles. Description: Lebreton, Annie, et al. Comparative genomics applied to Mucor species with different lifestyles. ''BMC Genomics''. 2020 Feb 10; '''21''' (1):135
Discovering the genes mediating the interactions between chronic respiratory diseases in the human interactome. Description: Maiorino, Enrico, et al. Discovering the genes mediating the interactions between chronic respiratory diseases in the human interactome. ''Nat Commun''. 2020 Feb 10; '''11''' (1):811
A 19-isolate reference-quality global pangenome for the fungal wheat pathogen Zymoseptoria tritici. Description: Badet, Thomas, et al. A 19-isolate reference-quality global pangenome for the fungal wheat pathogen Zymoseptoria tritici. ''BMC Biol''. 2020 Feb 11; '''18''' (1):12
Genome-wide gene expression profiling of the melon fly, Zeugodacus cucurbitae, during thirteen life stages. Description: Wei, Dong, et al. Genome-wide gene expression profiling of the melon fly, Zeugodacus cucurbitae, during thirteen life stages. ''Sci Data''. 2020 Feb 11; '''7''' (1):45
Machine learning-aided analyses of thousands of draft genomes reveal specific features of activated sludge processes. Description: Ye, Lin, et al. Machine learning-aided analyses of thousands of draft genomes reveal specific features of activated sludge processes. ''Microbiome''. 2020 Feb 11; '''8''' (1):16
Uncovering a hidden diversity: optimized protocols for the extraction of dsDNA bacteriophages from soil. Description: Goller, Pauline C, et al. Uncovering a hidden diversity: optimized protocols for the extraction of dsDNA bacteriophages from soil. ''Microbiome''. 2020 Feb 11; '''8''' (1):17
The metabolic pathway of sphingolipids biosynthesis and signaling in Entamoeba histolytica. Description: Avila-Garcia, Ricardo, et al. The metabolic pathway of sphingolipids biosynthesis and signaling in Entamoeba histolytica. ''Biochem Biophys Res Commun''. 2020 Feb 12; '''522''' (3):574-579
Assembly of hundreds of novel bacterial genomes from the chicken caecum. Description: Glendinning, Laura, et al. Assembly of hundreds of novel bacterial genomes from the chicken caecum. ''Genome Biol''. 2020 Feb 12; '''21''' (1):34
Bacteriophages Isolated from Stunted Children Can Regulate Gut Bacterial Communities in an Age-Specific Manner. Description: Khan Mirzaei, Mohammadali, et al. Bacteriophages Isolated from Stunted Children Can Regulate Gut Bacterial Communities in an Age-Specific Manner. ''Cell Host Microbe''. 2020 Feb 12; '''27''' (2):199-212.e5
High Genomic Variability in Equine Infectious Anemia Virus Obtained from Naturally Infected Horses in Pantanal, Brazil: An Endemic Region Case. Description: Malossi, Camila Dantas, et al. High Genomic Variability in Equine Infectious Anemia Virus Obtained from Naturally Infected Horses in Pantanal, Brazil: An Endemic Region Case. ''Viruses''. 2020 Feb 12; '''12''' (2):
Responses of Acidobacteria Granulicella sp. WH15 to High Carbon Revealed by Integrated Omics Analyses. Description: Costa, Ohana Y A, et al. Responses of Acidobacteria Granulicella sp. WH15 to High Carbon Revealed by Integrated Omics Analyses. ''Microorganisms''. 2020 Feb 12; '''8''' (2):
Towards the Preparation of Stable Cyclic Amino(ylide)Carbenes. Description: Steinert, Henning, et al. Towards the Preparation of Stable Cyclic Amino(ylide)Carbenes. ''Molecules''. 2020 Feb 12; '''25''' (4):
A comparative genomic analysis between methicillin-resistant Staphylococcus aureus strains of hospital acquired and community infections in Yunnan province of China. Description: Liao, Feng, et al. A comparative genomic analysis between methicillin-resistant Staphylococcus aureus strains of hospital acquired and community infections in Yunnan province of China. ''BMC Infect Dis''. 2020 Feb 13; '''20''' (1):137
Bergamot Polyphenols Improve Dyslipidemia and Pathophysiological Features in a Mouse Model of Non-Alcoholic Fatty Liver Disease. Description: Musolino, Vincenzo, et al. Bergamot Polyphenols Improve Dyslipidemia and Pathophysiological Features in a Mouse Model of Non-Alcoholic Fatty Liver Disease. ''Sci Rep''. 2020 Feb 13; '''10''' (1):2565
Metagenomic Insights into Effects of Thiamine Supplementation on Carbohydrate-Active Enzymes' Profile in Dairy Cows Fed High-Concentrate Diets. Description: Zhao, Yiguang, et al. Metagenomic Insights into Effects of Thiamine Supplementation on Carbohydrate-Active Enzymes' Profile in Dairy Cows Fed High-Concentrate Diets. ''Animals (Basel)''. 2020 Feb 14; '''10''' (2):
Crosstalk in the darkness: bulb vernalization activates meristem transition via circadian rhythm and photoperiodic pathway. Description: Ben Michael, Tomer E, et al. Crosstalk in the darkness: bulb vernalization activates meristem transition via circadian rhythm and photoperiodic pathway. ''BMC Plant Biol''. 2020 Feb 17; '''20''' (1):77
Metagenome Mining Reveals Hidden Genomic Diversity of Pelagimyophages in Aquatic Environments. Description: Zaragoza-Solas, Asier, et al. Metagenome Mining Reveals Hidden Genomic Diversity of Pelagimyophages in Aquatic Environments. ''mSystems''. 2020 Feb 18; '''5''' (1):
Phytochemical and comparative transcriptome analyses reveal different regulatory mechanisms in the terpenoid biosynthesis pathways between Matricaria recutita L. and Chamaemelum nobile L. Description: Tai, Yuling, et al. Phytochemical and comparative transcriptome analyses reveal different regulatory mechanisms in the terpenoid biosynthesis pathways between Matricaria recutita L. and Chamaemelum nobile L. ''BMC Genomics''. 2020 Feb 18; '''21''' (1):169
Transcriptional reprogramming strategies and miRNA-mediated regulation networks of Taxus media induced into callus cells from tissues. Description: Chen, Ying, et al. Transcriptional reprogramming strategies and miRNA-mediated regulation networks of Taxus media induced into callus cells from tissues. ''BMC Genomics''. 2020 Feb 18; '''21''' (1):168
Pre- and post-sequencing recommendations for functional annotation of human fecal metagenomes. Description: Treiber, Michelle L, et al. Pre- and post-sequencing recommendations for functional annotation of human fecal metagenomes. ''BMC Bioinformatics''. 2020 Feb 24; '''21''' (1):74
High-resolution structural insights into the heliorhodopsin family. Description: Kovalev, K, et al. High-resolution structural insights into the heliorhodopsin family. ''Proc Natl Acad Sci U S A''. 2020 Feb 25; '''117''' (8):4131-4141
Horizontal Gene Transfer to a Defensive Symbiont with a Reduced Genome in a Multipartite Beetle Microbiome. Description: Waterworth, Samantha C, et al. Horizontal Gene Transfer to a Defensive Symbiont with a Reduced Genome in a Multipartite Beetle Microbiome. ''mBio''. 2020 Feb 25; '''11''' (1):
In-depth Understanding of Camellia oleifera Self-incompatibility by Comparative Transcriptome, Proteome and Metabolome. Description: Zhou, Junqin, et al. In-depth Understanding of Camellia oleifera Self-incompatibility by Comparative Transcriptome, Proteome and Metabolome. ''Int J Mol Sci''. 2020 Feb 26; '''21''' (5):
Comprehensive characterization of cell-free tumor DNA in plasma and urine of patients with renal tumors. Description: Smith, Christopher G, et al. Comprehensive characterization of cell-free tumor DNA in plasma and urine of patients with renal tumors. ''Genome Med''. 2020 Feb 28; '''12''' (1):23
Maytenus disticha Extract and an Isolated beta-Dihydroagarofuran Induce Mitochondrial Depolarization and Apoptosis in Human Cancer Cells by Increasing Mitochondrial Reactive Oxygen Species. Description: Gonzalez-Chavarria, Ivan, et al. Maytenus disticha Extract and an Isolated beta-Dihydroagarofuran Induce Mitochondrial Depolarization and Apoptosis in Human Cancer Cells by Increasing Mitochondrial Reactive Oxygen Species. ''Biomolecules''. 2020 Feb 29; '''10''' (3):
BiomeNet: a database for construction and analysis of functional interaction networks for any species with a sequenced genome. Description: Kim, Eiru, et al. BiomeNet: a database for construction and analysis of functional interaction networks for any species with a sequenced genome. ''Bioinformatics''. 2020 Mar 1; '''36''' (5):1584-1589
DeepMicrobes: taxonomic classification for metagenomics with deep learning. Description: Liang, Qiaoxing, et al. DeepMicrobes: taxonomic classification for metagenomics with deep learning. ''NAR Genom Bioinform''. 2020 Mar; '''2''' (1):lqaa009
Structural and kinetic characterization of Trypanosoma congolense pyruvate kinase. Description: Pinto Torres, Joar Esteban, et al. Structural and kinetic characterization of Trypanosoma congolense pyruvate kinase. ''Mol Biochem Parasitol''. 2020 Mar; '''236''': 111263
WASPS: web-assisted symbolic plasmid synteny server. Description: Badel, Catherine, et al. WASPS: web-assisted symbolic plasmid synteny server. ''Bioinformatics''. 2020 Mar 1; '''36''' (5):1629-1631
Analysis of the quinoa genome reveals conservation and divergence of the flowering pathways. Description: Golicz, Agnieszka A, et al. Analysis of the quinoa genome reveals conservation and divergence of the flowering pathways. ''Funct Integr Genomics''. 2020 Mar; '''20''' (2):245-258
IL-6 produced by prostate epithelial cells stimulated with Trichomonas vaginalis promotes proliferation of prostate cancer cells by inducing M2 polarization of THP-1-derived macrophages. Description: Han, Ik-Hwan, et al. IL-6 produced by prostate epithelial cells stimulated with Trichomonas vaginalis promotes proliferation of prostate cancer cells by inducing M2 polarization of THP-1-derived macrophages. ''PLoS Negl Trop Dis''. 2020 Mar; '''14''' (3):e0008126
Long-term nutrient inputs shift soil microbial functional profiles of phosphorus cycling in diverse agroecosystems. Description: Dai, Zhongmin, et al. Long-term nutrient inputs shift soil microbial functional profiles of phosphorus cycling in diverse agroecosystems. ''ISME J''. 2020 Mar; '''14''' (3):757-770
Mycoparasitism illuminated by genome and transcriptome sequencing of Coniothyrium minitans, an important biocontrol fungus of the plant pathogen Sclerotinia sclerotiorum. Description: Zhao, Huizhang, et al. Mycoparasitism illuminated by genome and transcriptome sequencing of Coniothyrium minitans, an important biocontrol fungus of the plant pathogen Sclerotinia sclerotiorum. ''Microb Genom''. 2020 Mar; '''6''' (3):
Performance of Metagenomic Next-Generation Sequencing for the Diagnosis of Viral Meningoencephalitis in a Resource-Limited Setting. Description: Hong, Nguyen Thi Thu, et al. Performance of Metagenomic Next-Generation Sequencing for the Diagnosis of Viral Meningoencephalitis in a Resource-Limited Setting. ''Open Forum Infect Dis''. 2020 Mar; '''7''' (3):ofaa046
Shifts in reclamation management strategies shape the role of exopolysaccharide and lipopolysaccharide-producing bacteria during soil formation. Description: Vuko, Miljenka, et al. Shifts in reclamation management strategies shape the role of exopolysaccharide and lipopolysaccharide-producing bacteria during soil formation. ''Microb Biotechnol''. 2020 Mar; '''13''' (2):584-598
Impact of process temperature and organic loading rate on cellulolytic / hydrolytic biofilm microbiomes during biomethanation of ryegrass silage revealed by genome-centered metagenomics and metatranscriptomics. Description: Maus, Irena, et al. Impact of process temperature and organic loading rate on cellulolytic / hydrolytic biofilm microbiomes during biomethanation of ryegrass silage revealed by genome-centered metagenomics and metatranscriptomics. ''Environ Microbiome''. 2020 Mar 2; '''15''' (1):7
Metagenomic analysis reveals the microbiome and resistome in migratory birds. Description: Cao, Jian, et al. Metagenomic analysis reveals the microbiome and resistome in migratory birds. ''Microbiome''. 2020 Mar 2; '''8''' (1):26
An Integrated Metagenome Catalog Reveals New Insights into the Murine Gut Microbiome. Description: Lesker, Till R, et al. An Integrated Metagenome Catalog Reveals New Insights into the Murine Gut Microbiome. ''Cell Rep''. 2020 Mar 3; '''30''' (9):2909-2922.e6
Macrocyclic Peptides Uncover a Novel Binding Mode for Reversible Inhibitors of LSD1. Description: Yang, Jie, et al. Macrocyclic Peptides Uncover a Novel Binding Mode for Reversible Inhibitors of LSD1. ''ACS Omega''. 2020 Mar 3; '''5''' (8):3979-3995
Phylogenomics of Rhodocyclales and its distribution in wastewater treatment systems. Description: Wang, Zhongjie, et al. Phylogenomics of Rhodocyclales and its distribution in wastewater treatment systems. ''Sci Rep''. 2020 Mar 3; '''10''' (1):3883
Predictable modulation of cancer treatment outcomes by the gut microbiota. Description: Heshiki, Yoshitaro, et al. Predictable modulation of cancer treatment outcomes by the gut microbiota. ''Microbiome''. 2020 Mar 5; '''8''' (1):28
Transcriptome profiling provides insights into molecular mechanism in Peanut semi-dwarf mutant. Description: Guo, Fengdan, et al. Transcriptome profiling provides insights into molecular mechanism in Peanut semi-dwarf mutant. ''BMC Genomics''. 2020 Mar 5; '''21''' (1):211
Estimating relative biomasses of organisms in microbiota using "phylopeptidomics". Description: Pible, Olivier, et al. Estimating relative biomasses of organisms in microbiota using "phylopeptidomics". ''Microbiome''. 2020 Mar 6; '''8''' (1):30
New Viral Sequences Identified in the Flavescence Doree Phytoplasma Vector Scaphoideus titanus. Description: Ottati, Sara, et al. New Viral Sequences Identified in the Flavescence Doree Phytoplasma Vector Scaphoideus titanus. ''Viruses''. 2020 Mar 6; '''12''' (3):
Uncovering diversity and metabolic spectrum of animals in dead zone sediments. Description: Broman, Elias, et al. Uncovering diversity and metabolic spectrum of animals in dead zone sediments. ''Commun Biol''. 2020 Mar 6; '''3''' (1):106
Complementary Metagenomic Approaches Improve Reconstruction of Microbial Diversity in a Forest Soil. Description: Alteio, L V, et al. Complementary Metagenomic Approaches Improve Reconstruction of Microbial Diversity in a Forest Soil. ''mSystems''. 2020 Mar 10; '''5''' (2):
Microecological Koch's postulates reveal that intestinal microbiota dysbiosis contributes to shrimp white feces syndrome. Description: Huang, Zhijian, et al. Microecological Koch's postulates reveal that intestinal microbiota dysbiosis contributes to shrimp white feces syndrome. ''Microbiome''. 2020 Mar 10; '''8''' (1):32
Polymicrobial periodontal disease triggers a wide radius of effect and unique virome. Description: Gao, Li, et al. Polymicrobial periodontal disease triggers a wide radius of effect and unique virome. ''NPJ Biofilms Microbiomes''. 2020 Mar 10; '''6''' (1):10
Metagenomic analysis of bacterial species in tongue microbiome of current and never smokers. Description: Sato, Noriaki, et al. Metagenomic analysis of bacterial species in tongue microbiome of current and never smokers. ''NPJ Biofilms Microbiomes''. 2020 Mar 13; '''6''' (1):11
A Novel, Integron-Regulated, Class C beta-Lactamase. Description: Bohm, Maria-Elisabeth, et al. A Novel, Integron-Regulated, Class C beta-Lactamase. ''Antibiotics (Basel)''. 2020 Mar 14; '''9''' (3):
Characterization of antibiotic resistance and host-microbiome interactions in the human upper respiratory tract during influenza infection. Description: Zhang, Lingdi, et al. Characterization of antibiotic resistance and host-microbiome interactions in the human upper respiratory tract during influenza infection. ''Microbiome''. 2020 Mar 17; '''8''' (1):39
Comparative transcriptomic analysis of deep- and shallow-water barnacle species (Cirripedia, Poecilasmatidae) provides insights into deep-sea adaptation of sessile crustaceans. Description: Gan, Zhibin, et al. Comparative transcriptomic analysis of deep- and shallow-water barnacle species (Cirripedia, Poecilasmatidae) provides insights into deep-sea adaptation of sessile crustaceans. ''BMC Genomics''. 2020 Mar 17; '''21''' (1):240
Synthesis and Characterization of Two New Second Harmonic Generation Active Iodates: K3Sc(IO3)6 and KSc(IO3)3Cl. Description: Mitoudi Vagourdi, Eleni, et al. Synthesis and Characterization of Two New Second Harmonic Generation Active Iodates: K3Sc(IO3)6 and KSc(IO3)3Cl. ''ACS Omega''. 2020 Mar 17; '''5''' (10):5235-5240
Identification and Characterization of the First Virulent Phages, Including a Novel Jumbo Virus, Infecting Ochrobactrum spp. Description: Decewicz, Przemyslaw, et al. Identification and Characterization of the First Virulent Phages, Including a Novel Jumbo Virus, Infecting Ochrobactrum spp. ''Int J Mol Sci''. 2020 Mar 18; '''21''' (6):
Chemical-defined medium supporting the expansion of human mesenchymal stem cells. Description: Xu, Jianyong, et al. Chemical-defined medium supporting the expansion of human mesenchymal stem cells. ''Stem Cell Res Ther''. 2020 Mar 19; '''11''' (1):125
Comparison of leaf transcriptome in response to Rhizoctonia solani infection between resistant and susceptible rice cultivars. Description: Shi, Wei, et al. Comparison of leaf transcriptome in response to Rhizoctonia solani infection between resistant and susceptible rice cultivars. ''BMC Genomics''. 2020 Mar 19; '''21''' (1):245
Discovery of a novel integron-borne aminoglycoside resistance gene present in clinical pathogens by screening environmental bacterial communities. Description: Bohm, Maria-Elisabeth, et al. Discovery of a novel integron-borne aminoglycoside resistance gene present in clinical pathogens by screening environmental bacterial communities. ''Microbiome''. 2020 Mar 20; '''8''' (1):41
Evolutionary genetics of canine respiratory coronavirus and recent introduction into Swedish dogs. Description: Wille, Michelle, et al. Evolutionary genetics of canine respiratory coronavirus and recent introduction into Swedish dogs. ''Infect Genet Evol''. 2020 Mar 20; '''82''': 104290
Marine Sediments Illuminate Chlamydiae Diversity and Evolution. Description: Dharamshi, Jennah E, et al. Marine Sediments Illuminate Chlamydiae Diversity and Evolution. ''Curr Biol''. 2020 Mar 23; '''30''' (6):1032-1048.e7
No More Tears: Mining Sequencing Data for Novel Bt Cry Toxins with CryProcessor. Description: Shikov, Anton E, et al. No More Tears: Mining Sequencing Data for Novel Bt Cry Toxins with CryProcessor. ''Toxins (Basel)''. 2020 Mar 23; '''12''' (3):
De novo Sequencing and Analysis of Salvia hispanica Tissue-Specific Transcriptome and Identification of Genes Involved in Terpenoid Biosynthesis. Description: Wimberley, James, et al. De novo Sequencing and Analysis of Salvia hispanica Tissue-Specific Transcriptome and Identification of Genes Involved in Terpenoid Biosynthesis. ''Plants (Basel)''. 2020 Mar 24; '''9''' (3):
Butterfly eyespot color pattern formation requires physical contact of the pupal wing epithelium with extracellular materials for morphogenic signal propagation. Description: Otaki, Joji M. Butterfly eyespot color pattern formation requires physical contact of the pupal wing epithelium with extracellular materials for morphogenic signal propagation. ''BMC Dev Biol''. 2020 Mar 31; '''20''' (1):6
Insights into the Synthesis, Secretion and Curing of Barnacle Cyprid Adhesive via Transcriptomic and Proteomic Analyses of the Cement Gland. Description: Yan, Guoyong, et al. Insights into the Synthesis, Secretion and Curing of Barnacle Cyprid Adhesive via Transcriptomic and Proteomic Analyses of the Cement Gland. ''Mar Drugs''. 2020 Mar 31; '''18''' (4):
The First Genome Survey of the Antarctic Krill (Euphausia superba) Provides a Valuable Genetic Resource for Polar Biomedical Research. Description: Huang, Yuting, et al. The First Genome Survey of the Antarctic Krill (Euphausia superba) Provides a Valuable Genetic Resource for Polar Biomedical Research. ''Mar Drugs''. 2020 Mar 31; '''18''' (4):
Transcriptome reconstruction and functional analysis of eukaryotic marine plankton communities via high-throughput metagenomics and metatranscriptomics. Description: Vorobev, Alexey, et al. Transcriptome reconstruction and functional analysis of eukaryotic marine plankton communities via high-throughput metagenomics and metatranscriptomics. ''Genome Res''. 2020 Apr; '''30''' (4):647-659
A food-based, low-energy, low-carbohydrate diet for people with type 2 diabetes in primary care: A randomized controlled feasibility trial. Description: Morris, Elizabeth, et al. A food-based, low-energy, low-carbohydrate diet for people with type 2 diabetes in primary care: A randomized controlled feasibility trial. ''Diabetes Obes Metab''. 2020 Apr; '''22''' (4):512-520
Anaerobic methane oxidation coupled to manganese reduction by members of the Methanoperedenaceae. Description: Leu, Andy O, et al. Anaerobic methane oxidation coupled to manganese reduction by members of the Methanoperedenaceae. ''ISME J''. 2020 Apr; '''14''' (4):1030-1041
Linking extracellular enzymes to phylogeny indicates a predominantly particle-associated lifestyle of deep-sea prokaryotes. Description: Zhao, Zihao, et al. Linking extracellular enzymes to phylogeny indicates a predominantly particle-associated lifestyle of deep-sea prokaryotes. ''Sci Adv''. 2020 Apr; '''6''' (16):eaaz4354
The association between microbial community and ileal gene expression on intestinal wall thickness alterations in chickens. Description: Tang, Dazhi, et al. The association between microbial community and ileal gene expression on intestinal wall thickness alterations in chickens. ''Poult Sci''. 2020 Apr; '''99''' (4):1847-1861
The first dataset of de novo transcriptome assembly of Heterotrigona itama (Apidae, Meliponinae) queen larva. Description: Tamizi, Amin Asyraf, et al. The first dataset of de novo transcriptome assembly of Heterotrigona itama (Apidae, Meliponinae) queen larva. ''Data Brief''. 2020 Apr; '''29''': 105235
What Is in Umbilicaria pustulata? A Metagenomic Approach to Reconstruct the Holo-Genome of a Lichen. Description: Greshake Tzovaras, Bastian, et al. What Is in Umbilicaria pustulata? A Metagenomic Approach to Reconstruct the Holo-Genome of a Lichen. ''Genome Biol Evol''. 2020 Apr 1; '''12''' (4):309-324
Structure and function of the Arctic and Antarctic marine microbiota as revealed by metagenomics. Description: Zhang, Weipeng, et al. Structure and function of the Arctic and Antarctic marine microbiota as revealed by metagenomics. ''Microbiome''. 2020 Apr 2; '''8''' (1):47
Vermamoeba vermiformis CDC-19 draft genome sequence reveals considerable gene trafficking including with candidate phyla radiation and giant viruses. Description: Chelkha, Nisrine, et al. Vermamoeba vermiformis CDC-19 draft genome sequence reveals considerable gene trafficking including with candidate phyla radiation and giant viruses. ''Sci Rep''. 2020 Apr 3; '''10''' (1):5928
Small and mighty: adaptation of superphylum Patescibacteria to groundwater environment drives their genome simplicity. Description: Tian, Renmao, et al. Small and mighty: adaptation of superphylum Patescibacteria to groundwater environment drives their genome simplicity. ''Microbiome''. 2020 Apr 6; '''8''' (1):51
BlobToolKit - Interactive Quality Assessment of Genome Assemblies. Description: Challis, Richard, et al. BlobToolKit - Interactive Quality Assessment of Genome Assemblies. ''G3 (Bethesda)''. 2020 Apr 9; '''10''' (4):1361-1374
Azaphilones from the Red Sea Fungus Aspergillus falconensis. Description: El-Kashef, Dina H, et al. Azaphilones from the Red Sea Fungus Aspergillus falconensis. ''Mar Drugs''. 2020 Apr 10; '''18''' (4):
Identification of immune-related proteins of Dreissena polymorpha hemocytes and plasma involved in host-microbe interactions by differential proteomics. Description: Lepretre, Maxime, et al. Identification of immune-related proteins of Dreissena polymorpha hemocytes and plasma involved in host-microbe interactions by differential proteomics. ''Sci Rep''. 2020 Apr 10; '''10''' (1):6226
Selection Is a Significant Driver of Gene Gain and Loss in the Pangenome of the Bacterial Genus Sulfurovum in Geographically Distinct Deep-Sea Hydrothermal Vents. Description: Moulana, Alief, et al. Selection Is a Significant Driver of Gene Gain and Loss in the Pangenome of the Bacterial Genus Sulfurovum in Geographically Distinct Deep-Sea Hydrothermal Vents. ''mSystems''. 2020 Apr 14; '''5''' (2):
Synthesis, Antiproliferative Activity and Molecular Docking Studies of Novel Doubly Modified Colchicine Amides and Sulfonamides as Anticancer Agents. Description: Krzywik, Julia, et al. Synthesis, Antiproliferative Activity and Molecular Docking Studies of Novel Doubly Modified Colchicine Amides and Sulfonamides as Anticancer Agents. ''Molecules''. 2020 Apr 14; '''25''' (8):
Being red, blue and green: the genetic basis of coloration differences in the strawberry poison frog (Oophaga pumilio). Description: Rodriguez, Ariel, et al. Being red, blue and green: the genetic basis of coloration differences in the strawberry poison frog (Oophaga pumilio). ''BMC Genomics''. 2020 Apr 15; '''21''' (1):301
Transcriptomic analysis of sea cucumber (Holothuria leucospilota) coelomocytes revealed the echinoderm cytokine response during immune challenge. Description: Wu, Xiaofen, et al. Transcriptomic analysis of sea cucumber (Holothuria leucospilota) coelomocytes revealed the echinoderm cytokine response during immune challenge. ''BMC Genomics''. 2020 Apr 16; '''21''' (1):306
Impact of intestinal parasites on microbiota and cobalamin gene sequences: a pilot study. Description: Mejia, Rojelio, et al. Impact of intestinal parasites on microbiota and cobalamin gene sequences: a pilot study. ''Parasit Vectors''. 2020 Apr 19; '''13''' (1):200
Identification and molecular characterization of the first complete genome sequence of Human Parechovirus type 15. Description: Fernandez-Garcia, Maria Dolores, et al. Identification and molecular characterization of the first complete genome sequence of Human Parechovirus type 15. ''Sci Rep''. 2020 Apr 21; '''10''' (1):6759
Biological Activities of Essential Oils from Leaves of Paramignya trimera (Oliv.) Guillaum and Limnocitrus littoralis (Miq.) Swingle. Description: Trong Le, Nhan, et al. Biological Activities of Essential Oils from Leaves of Paramignya trimera (Oliv.) Guillaum and Limnocitrus littoralis (Miq.) Swingle. ''Antibiotics (Basel)''. 2020 Apr 24; '''9''' (4):
Rocket Science: The Effect of Spaceflight on Germination Physiology, Ageing, and Transcriptome of Eruca sativa Seeds. Description: Chandler, Jake O, et al. Rocket Science: The Effect of Spaceflight on Germination Physiology, Ageing, and Transcriptome of Eruca sativa Seeds. ''Life (Basel)''. 2020 Apr 24; '''10''' (4):
Influenza infection elicits an expansion of gut population of endogenous Bifidobacterium animalis which protects mice against infection. Description: Zhang, Qiang, et al. Influenza infection elicits an expansion of gut population of endogenous Bifidobacterium animalis which protects mice against infection. ''Genome Biol''. 2020 Apr 28; '''21''' (1):99
Microbial Nitrogen Metabolism in Chloraminated Drinking Water Reservoirs. Description: Potgieter, Sarah C, et al. Microbial Nitrogen Metabolism in Chloraminated Drinking Water Reservoirs. ''mSphere''. 2020 Apr 29; '''5''' (2):
The Dark Side of Orchid Symbiosis: Can Tulasnella calospora Decompose Host Tissues? Description: Adamo, Martino, et al. The Dark Side of Orchid Symbiosis: Can Tulasnella calospora Decompose Host Tissues? ''Int J Mol Sci''. 2020 Apr 29; '''21''' (9):
Under-the-Radar Dengue Virus Infections in Natural Populations of Aedes aegypti Mosquitoes. Description: Boyles, Sean M, et al. Under-the-Radar Dengue Virus Infections in Natural Populations of Aedes aegypti Mosquitoes. ''mSphere''. 2020 Apr 29; '''5''' (2):
Comparative Genomic and Proteomic Analyses of Three Widespread Phytophthora Species: Phytophthora chlamydospora, Phytophthora gonapodyides and Phytophthora pseudosyringae. Description: McGowan, Jamie, et al. Comparative Genomic and Proteomic Analyses of Three Widespread Phytophthora Species: Phytophthora chlamydospora, Phytophthora gonapodyides and Phytophthora pseudosyringae. ''Microorganisms''. 2020 Apr 30; '''8''' (5):
A single unidirectional piRNA cluster similar to the flamenco locus is the major source of EVE-derived transcription and small RNAs in Aedes aegypti mosquitoes. Description: Aguiar, Eric Roberto Guimaraes Rocha, et al. A single unidirectional piRNA cluster similar to the flamenco locus is the major source of EVE-derived transcription and small RNAs in Aedes aegypti mosquitoes. ''RNA''. 2020 May; '''26''' (5):581-594
Fecal metatranscriptomics and glycomics suggest that bovine milk oligosaccharides are fully utilized by healthy adults. Description: Westreich, Samuel T, et al. Fecal metatranscriptomics and glycomics suggest that bovine milk oligosaccharides are fully utilized by healthy adults. ''J Nutr Biochem''. 2020 May; '''79''': 108340
Viral metagenomics performed in patients with acute febrile syndrome during Toxoplasma gondii outbreak in south Brazil. Description: Bezerra, Rafael Dos Santos, et al. Viral metagenomics performed in patients with acute febrile syndrome during Toxoplasma gondii outbreak in south Brazil. ''Braz J Infect Dis''. 2020 May - Jun; '''24''' (3):250-255
A Continuum of Evolving De Novo Genes Drives Protein-Coding Novelty in Drosophila. Description: Heames, Brennen, et al. A Continuum of Evolving De Novo Genes Drives Protein-Coding Novelty in Drosophila. ''J Mol Evol''. 2020 May; '''88''' (4):382-398
Adverse effects of electronic cigarettes on the disease-naive oral microbiome. Description: Ganesan, Sukirth M, et al. Adverse effects of electronic cigarettes on the disease-naive oral microbiome. ''Sci Adv''. 2020 May; '''6''' (22):eaaz0108
Antiviral, Antibacterial, Antifungal, and Cytotoxic Silver(I) BioMOF Assembled from 1,3,5-Triaza-7-Phoshaadamantane and Pyromellitic Acid. Description: Jaros, Sabina W, et al. Antiviral, Antibacterial, Antifungal, and Cytotoxic Silver(I) BioMOF Assembled from 1,3,5-Triaza-7-Phoshaadamantane and Pyromellitic Acid. ''Molecules''. 2020 May 1; '''25''' (9):
A systematic machine learning and data type comparison yields metagenomic predictors of infant age, sex, breastfeeding, antibiotic usage, country of origin, and delivery type. Description: Le Goallec, Alan, et al. A systematic machine learning and data type comparison yields metagenomic predictors of infant age, sex, breastfeeding, antibiotic usage, country of origin, and delivery type. ''PLoS Comput Biol''. 2020 May; '''16''' (5):e1007895
Differential Expression of Immune Genes between Two Closely Related Beetle Species with Different Immunocompetence following Attack by Asecodes parviclava. Description: Yang, Xuyue, et al. Differential Expression of Immune Genes between Two Closely Related Beetle Species with Different Immunocompetence following Attack by Asecodes parviclava. ''Genome Biol Evol''. 2020 May 1; '''12''' (5):522-534
Distinct Life Histories Impact Dikaryotic Genome Evolution in the Rust Fungus Puccinia striiformis Causing Stripe Rust in Wheat. Description: Schwessinger, Benjamin, et al. Distinct Life Histories Impact Dikaryotic Genome Evolution in the Rust Fungus Puccinia striiformis Causing Stripe Rust in Wheat. ''Genome Biol Evol''. 2020 May 1; '''12''' (5):597-617
Ecogenomics of the SAR11 clade. Description: Haro-Moreno, Jose M, et al. Ecogenomics of the SAR11 clade. ''Environ Microbiol''. 2020 May; '''22''' (5):1748-1763
PSORTm: a bacterial and archaeal protein subcellular localization prediction tool for metagenomics data. Description: Peabody, Michael A, et al. PSORTm: a bacterial and archaeal protein subcellular localization prediction tool for metagenomics data. ''Bioinformatics''. 2020 May 1; '''36''' (10):3043-3048
The gene-rich genome of the scallop Pecten maximus. Description: Kenny, Nathan J, et al. The gene-rich genome of the scallop Pecten maximus. ''Gigascience''. 2020 May 1; '''9''' (5):
Transcriptome Analysis of Jojoba (Simmondsia chinensis) during Seed Development and Liquid Wax Ester Biosynthesis. Description: Alotaibi, Saqer S, et al. Transcriptome Analysis of Jojoba (Simmondsia chinensis) during Seed Development and Liquid Wax Ester Biosynthesis. ''Plants (Basel)''. 2020 May 4; '''9''' (5):
Virome of a Feline Outbreak of Diarrhea and Vomiting Includes Bocaviruses and a Novel Chapparvovirus. Description: Li, Yanpeng, et al. Virome of a Feline Outbreak of Diarrhea and Vomiting Includes Bocaviruses and a Novel Chapparvovirus. ''Viruses''. 2020 May 4; '''12''' (5):
A Modular Metagenomics Pipeline Allowing for the Inclusion of Prior Knowledge Using the Example of Anaerobic Digestion. Description: Becker, Daniela, et al. A Modular Metagenomics Pipeline Allowing for the Inclusion of Prior Knowledge Using the Example of Anaerobic Digestion. ''Microorganisms''. 2020 May 5; '''8''' (5):
Phages Actively Challenge Niche Communities in Antarctic Soils. Description: Bezuidt, Oliver K I, et al. Phages Actively Challenge Niche Communities in Antarctic Soils. ''mSystems''. 2020 May 5; '''5''' (3):
Multi-proxy analyses of a mid-15th century Middle Iron Age Bantu-speaker palaeo-faecal specimen elucidates the configuration of the 'ancestral' sub-Saharan African intestinal microbiome. Description: Rifkin, Riaan F, et al. Multi-proxy analyses of a mid-15th century Middle Iron Age Bantu-speaker palaeo-faecal specimen elucidates the configuration of the 'ancestral' sub-Saharan African intestinal microbiome. ''Microbiome''. 2020 May 6; '''8''' (1):62
High-Throughput Sequencing Reveals a Potentially Novel Sulfurovum Species Dominating the Microbial Communities of the Seawater-Sediment Interface of a Deep-Sea Cold Seep in South China Sea. Description: Sun, Qing-Lei, et al. High-Throughput Sequencing Reveals a Potentially Novel Sulfurovum Species Dominating the Microbial Communities of the Seawater-Sediment Interface of a Deep-Sea Cold Seep in South China Sea. ''Microorganisms''. 2020 May 8; '''8''' (5):
Small RNA and Transcriptome Sequencing Reveals miRNA Regulation of Floral Thermogenesis in Nelumbo nucifera. Description: Zou, Yu, et al. Small RNA and Transcriptome Sequencing Reveals miRNA Regulation of Floral Thermogenesis in Nelumbo nucifera. ''Int J Mol Sci''. 2020 May 8; '''21''' (9):
The loss of photosynthesis pathway and genomic locations of the lost plastid genes in a holoparasitic plant Aeginetia indica. Description: Chen, Jingfang, et al. The loss of photosynthesis pathway and genomic locations of the lost plastid genes in a holoparasitic plant Aeginetia indica. ''BMC Plant Biol''. 2020 May 8; '''20''' (1):199
Multi-omics reveals that the rumen microbiome and its metabolome together with the host metabolome contribute to individualized dairy cow performance. Description: Xue, Ming-Yuan, et al. Multi-omics reveals that the rumen microbiome and its metabolome together with the host metabolome contribute to individualized dairy cow performance. ''Microbiome''. 2020 May 12; '''8''' (1):64
Sorghum Growth Promotion by Paraburkholderia tropica and Herbaspirillum frisingense: Putative Mechanisms Revealed by Genomics and Metagenomics. Description: Kuramae, Eiko E, et al. Sorghum Growth Promotion by Paraburkholderia tropica and Herbaspirillum frisingense: Putative Mechanisms Revealed by Genomics and Metagenomics. ''Microorganisms''. 2020 May 13; '''8''' (5):
Transcriptome analyses suggest a molecular mechanism for the SIPC response of Amphibalanus amphitrite. Description: Zhang, Xinkang, et al. Transcriptome analyses suggest a molecular mechanism for the SIPC response of Amphibalanus amphitrite. ''Biochem Biophys Res Commun''. 2020 May 14; '''525''' (4):823-829
Metatranscriptomic Analysis of Oil-Exposed Seawater Bacterial Communities Archived by an Environmental Sample Processor (ESP). Description: Knapik, Kamila, et al. Metatranscriptomic Analysis of Oil-Exposed Seawater Bacterial Communities Archived by an Environmental Sample Processor (ESP). ''Microorganisms''. 2020 May 15; '''8''' (5):
Ruthenacarborane-Phenanthroline Derivatives as Potential Metallodrugs. Description: Kellert, Martin, et al. Ruthenacarborane-Phenanthroline Derivatives as Potential Metallodrugs. ''Molecules''. 2020 May 15; '''25''' (10):
Diversity, Transmission, and Cophylogeny of Ledanteviruses (Rhabdoviridae: Ledantevirus) and Nycteribiid Bat Flies Parasitizing Angolan Soft-Furred Fruit Bats in Bundibugyo District, Uganda. Description: Bennett, Andrew J, et al. Diversity, Transmission, and Cophylogeny of Ledanteviruses (Rhabdoviridae: Ledantevirus) and Nycteribiid Bat Flies Parasitizing Angolan Soft-Furred Fruit Bats in Bundibugyo District, Uganda. ''Microorganisms''. 2020 May 17; '''8''' (5):
Hemodynamic Change of Coronary Atherosclerotic Plaque After Statin Treatment: A Serial Follow-Up Study by Computed Tomography-Derived Fractional Flow Reserve. Description: Yu, Mengmeng, et al. Hemodynamic Change of Coronary Atherosclerotic Plaque After Statin Treatment: A Serial Follow-Up Study by Computed Tomography-Derived Fractional Flow Reserve. ''J Am Heart Assoc''. 2020 May 18; '''9''' (10):e015772
Parallel Evolution in the Integration of a Co-obligate Aphid Symbiosis. Description: Monnin, David, et al. Parallel Evolution in the Integration of a Co-obligate Aphid Symbiosis. ''Curr Biol''. 2020 May 18; '''30''' (10):1949-1957.e6
Comparative Analysis of RNA Virome Composition in Rabbits and Associated Ectoparasites. Description: Mahar, Jackie E, et al. Comparative Analysis of RNA Virome Composition in Rabbits and Associated Ectoparasites. ''J Virol''. 2020 May 18; '''94''' (11):
The microbiome as a biosensor: functional profiles elucidate hidden stress in hosts. Description: Zolti, Avihai, et al. The microbiome as a biosensor: functional profiles elucidate hidden stress in hosts. ''Microbiome''. 2020 May 21; '''8''' (1):71
Improving the mechanical behavior of reduced graphene oxide/hydroxyapatite nanocomposites using gas injection into powders synthesis autoclave. Description: Nosrati, Hassan, et al. Improving the mechanical behavior of reduced graphene oxide/hydroxyapatite nanocomposites using gas injection into powders synthesis autoclave. ''Sci Rep''. 2020 May 22; '''10''' (1):8552
Genomes of the dinoflagellate Polarella glacialis encode tandemly repeated single-exon genes with adaptive functions. Description: Stephens, Timothy G, et al. Genomes of the dinoflagellate Polarella glacialis encode tandemly repeated single-exon genes with adaptive functions. ''BMC Biol''. 2020 May 24; '''18''' (1):56
Lifestyle and the presence of helminths is associated with gut microbiome composition in Cameroonians. Description: Rubel, Meagan A, et al. Lifestyle and the presence of helminths is associated with gut microbiome composition in Cameroonians. ''Genome Biol''. 2020 May 25; '''21''' (1):122
A molecular filter for the cnidarian stinging response. Description: Weir, Keiko, et al. A molecular filter for the cnidarian stinging response. ''Elife''. 2020 May 26; '''9''':
Ruminal Methanogenic Responses to the Thiamine Supplementation in High-Concentrate Diets. Description: Xue, Fuguang, et al. Ruminal Methanogenic Responses to the Thiamine Supplementation in High-Concentrate Diets. ''Animals (Basel)''. 2020 May 28; '''10''' (6):
Transcriptome Analysis Identifies Candidate Target Genes Involved in Glyphosate-Resistance Mechanism in Lolium multiflorum. Description: Cechin, Joanei, et al. Transcriptome Analysis Identifies Candidate Target Genes Involved in Glyphosate-Resistance Mechanism in Lolium multiflorum. ''Plants (Basel)''. 2020 May 28; '''9''' (6):
Physiological and transcriptomic analysis of 'Whangkeumbae' pear core browning during low-temperature storage. Description: Zhou, Hongsheng, et al. Physiological and transcriptomic analysis of 'Whangkeumbae' pear core browning during low-temperature storage. ''Gene Expr Patterns''. 2020 Jun; '''36''': 119113
A catalog of microbial genes from the bovine rumen unveils a specialized and diverse biomass-degrading environment. Description: Li, Junhua, et al. A catalog of microbial genes from the bovine rumen unveils a specialized and diverse biomass-degrading environment. ''Gigascience''. 2020 Jun 1; '''9''' (6):
Cartography of opportunistic pathogens and antibiotic resistance genes in a tertiary hospital environment. Description: Chng, Kern Rei, et al. Cartography of opportunistic pathogens and antibiotic resistance genes in a tertiary hospital environment. ''Nat Med''. 2020 Jun; '''26''' (6):941-951
Cultivation-independent and cultivation-dependent metagenomes reveal genetic and enzymatic potential of microbial community involved in the degradation of a complex microbial polymer. Description: Costa, Ohana Y A, et al. Cultivation-independent and cultivation-dependent metagenomes reveal genetic and enzymatic potential of microbial community involved in the degradation of a complex microbial polymer. ''Microbiome''. 2020 Jun 1; '''8''' (1):76
GeneMark-EP+: eukaryotic gene prediction with self-training in the space of genes and proteins. Description: Bruna, Tomas, et al. GeneMark-EP+: eukaryotic gene prediction with self-training in the space of genes and proteins. ''NAR Genom Bioinform''. 2020 Jun; '''2''' (2):lqaa026
Genomic consequences of dietary diversification and parallel evolution due to nectarivory in leaf-nosed bats. Description: Gutierrez-Guerrero, Yocelyn T, et al. Genomic consequences of dietary diversification and parallel evolution due to nectarivory in leaf-nosed bats. ''Gigascience''. 2020 Jun 1; '''9''' (6):
Novel partiti-like viruses are conditional mutualistic symbionts in their normal lepidopteran host, African armyworm, but parasitic in a novel host, Fall armyworm. Description: Xu, Pengjun, et al. Novel partiti-like viruses are conditional mutualistic symbionts in their normal lepidopteran host, African armyworm, but parasitic in a novel host, Fall armyworm. ''PLoS Pathog''. 2020 Jun; '''16''' (6):e1008467
Novel phosphate-solubilizing bacteria enhance soil phosphorus cycling following ecological restoration of land degraded by mining. Description: Liang, Jie-Liang, et al. Novel phosphate-solubilizing bacteria enhance soil phosphorus cycling following ecological restoration of land degraded by mining. ''ISME J''. 2020 Jun; '''14''' (6):1600-1613
Polysaccharide niche partitioning of distinct Polaribacter clades during North Sea spring algal blooms. Description: Avci, Burak, et al. Polysaccharide niche partitioning of distinct Polaribacter clades during North Sea spring algal blooms. ''ISME J''. 2020 Jun; '''14''' (6):1369-1383
Preterm infants harbour diverse Klebsiella populations, including atypical species that encode and produce an array of antimicrobial resistance- and virulence-associated factors. Description: Chen, Yuhao, et al. Preterm infants harbour diverse Klebsiella populations, including atypical species that encode and produce an array of antimicrobial resistance- and virulence-associated factors. ''Microb Genom''. 2020 Jun; '''6''' (6):
*Single crystal structure, vibrational spectroscopy, gas sorption and antimicrobial properties of a new inorganic acidic diphosphates material (NH4)2Mg(H2P2O7)22H2O.** Description: Essehli, Rachid, et al. Single crystal structure, vibrational spectroscopy, gas sorption and antimicrobial properties of a new inorganic acidic diphosphates material (NH4)2Mg(H2P2O7)2*2H2O. ''Sci Rep''. 2020 Jun 1; '''10''' (1):8909
The First Draft Genome of the Plasterer Bee Colletes gigas (Hymenoptera: Colletidae: Colletes). Description: Zhou, Qing-Song, et al. The First Draft Genome of the Plasterer Bee Colletes gigas (Hymenoptera: Colletidae: Colletes). ''Genome Biol Evol''. 2020 Jun 1; '''12''' (6):860-866
------Widespread conservation and lineage-specific diversification of genome-wide DNA methylation patterns across arthropods. Description: Lewis, Samuel H, et al. ------Widespread conservation and lineage-specific diversification of genome-wide DNA methylation patterns across arthropods. ''PLoS Genet''. 2020 Jun; '''16''' (6):e1008864
Association of gut microbiota composition and function with an aged rat model of senile osteoporosis using 16S rRNA and metagenomic sequencing analysis. Description: Ma, Sicong, et al. Association of gut microbiota composition and function with an aged rat model of senile osteoporosis using 16S rRNA and metagenomic sequencing analysis. ''Aging (Albany NY)''. 2020 Jun 2; '''12''' (11):10795-10808
Structural and functional changes of gut microbiota in ovariectomized rats and their correlations with altered bone mass. Description: Ma, Sicong, et al. Structural and functional changes of gut microbiota in ovariectomized rats and their correlations with altered bone mass. ''Aging (Albany NY)''. 2020 Jun 2; '''12''' (11):10736-10753
Alterations in the Ocular Surface Microbiome in Traumatic Corneal Ulcer Patients. Description: Kang, Yutong, et al. Alterations in the Ocular Surface Microbiome in Traumatic Corneal Ulcer Patients. ''Invest Ophthalmol Vis Sci''. 2020 Jun 3; '''61''' (6):35
A Divergent Articulavirus in an Australian Gecko Identified Using Meta-Transcriptomics and Protein Structure Comparisons. Description: Ortiz-Baez, Ayda Susana, et al. A Divergent Articulavirus in an Australian Gecko Identified Using Meta-Transcriptomics and Protein Structure Comparisons. ''Viruses''. 2020 Jun 4; '''12''' (6):
Combining proteogenomics and metaproteomics for deep taxonomic and functional characterization of microbiomes from a non-sequenced host. Description: Gouveia, Duarte, et al. Combining proteogenomics and metaproteomics for deep taxonomic and functional characterization of microbiomes from a non-sequenced host. ''NPJ Biofilms Microbiomes''. 2020 Jun 5; '''6''' (1):23
Winter warming in Alaska accelerates lignin decomposition contributed by Proteobacteria. Description: Tao, Xuanyu, et al. Winter warming in Alaska accelerates lignin decomposition contributed by Proteobacteria. ''Microbiome''. 2020 Jun 5; '''8''' (1):84
A case study of salivary microbiome in smokers and non-smokers in Hungary: analysis by shotgun metagenome sequencing. Description: Wirth, Roland, et al. A case study of salivary microbiome in smokers and non-smokers in Hungary: analysis by shotgun metagenome sequencing. ''J Oral Microbiol''. 2020 Jun 7; '''12''' (1):1773067
Alteromonas Myovirus V22 Represents a New Genus of Marine Bacteriophages Requiring a Tail Fiber Chaperone for Host Recognition. Description: Gonzalez-Serrano, Rafael, et al. Alteromonas Myovirus V22 Represents a New Genus of Marine Bacteriophages Requiring a Tail Fiber Chaperone for Host Recognition. ''mSystems''. 2020 Jun 9; '''5''' (3):
The PPAR alpha/gamma Agonist Saroglitazar Improves Insulin Resistance and Steatohepatitis in a Diet Induced Animal Model of Nonalcoholic Fatty Liver Disease. Description: Kumar, Divya P, et al. The PPAR alpha/gamma Agonist Saroglitazar Improves Insulin Resistance and Steatohepatitis in a Diet Induced Animal Model of Nonalcoholic Fatty Liver Disease. ''Sci Rep''. 2020 Jun 9; '''10''' (1):9330
Bringing a New Flexible Mercaptoacetic Acid Linker to the Design of Coordination Polymers. Description: Ostasz, Agnieszka, et al. Bringing a New Flexible Mercaptoacetic Acid Linker to the Design of Coordination Polymers. ''Polymers (Basel)''. 2020 Jun 10; '''12''' (6):
Deep DNA metagenomic sequencing reveals oral microbiome divergence between monozygotic twins discordant for multiple sclerosis severity. Description: Boullerne, Anne I, et al. Deep DNA metagenomic sequencing reveals oral microbiome divergence between monozygotic twins discordant for multiple sclerosis severity. ''J Neuroimmunol''. 2020 Jun 15; '''343''': 577237
Characterization and Analysis of the Full-Length Transcriptomes of Multiple Organs in Pseudotaxus chienii (W.C.Cheng) W.C.Cheng. Description: Liu, Li, et al. Characterization and Analysis of the Full-Length Transcriptomes of Multiple Organs in Pseudotaxus chienii (W.C.Cheng) W.C.Cheng. ''Int J Mol Sci''. 2020 Jun 17; '''21''' (12):
Cognitive flexibility and N2/P3 event-related brain potentials. Description: Kopp, Bruno, et al. Cognitive flexibility and N2/P3 event-related brain potentials. ''Sci Rep''. 2020 Jun 17; '''10''' (1):9859
Importance of Defluviitalea raffinosedens for Hydrolytic Biomass Degradation in Co-Culture with Hungateiclostridium thermocellum. Description: Rettenmaier, Regina, et al. Importance of Defluviitalea raffinosedens for Hydrolytic Biomass Degradation in Co-Culture with Hungateiclostridium thermocellum. ''Microorganisms''. 2020 Jun 17; '''8''' (6):
Phytochemical Compositions and Biological Activities of Essential Oils from the Leaves, Rhizomes and Whole Plant of Hornstedtia bella Skornick. Description: Donadu, Matthew Gavino, et al. Phytochemical Compositions and Biological Activities of Essential Oils from the Leaves, Rhizomes and Whole Plant of Hornstedtia bella Skornick. ''Antibiotics (Basel)''. 2020 Jun 18; '''9''' (6):
Pontiella desulfatans gen. nov., sp. nov., and Pontiella sulfatireligans sp. nov., Two Marine Anaerobes of the Pontiellaceae fam. nov. Producing Sulfated Glycosaminoglycan-like Exopolymers. Description: van Vliet, Daan M, et al. Pontiella desulfatans gen. nov., sp. nov., and Pontiella sulfatireligans sp. nov., Two Marine Anaerobes of the Pontiellaceae fam. nov. Producing Sulfated Glycosaminoglycan-like Exopolymers. ''Microorganisms''. 2020 Jun 18; '''8''' (6):
The Genome Analysis of Methylobacterium populi YC-XJ1 with Diverse Xenobiotics Biodegrading Capacity and Degradation Characteristics of Related Hydrolase. Description: Li, Xianjun, et al. The Genome Analysis of Methylobacterium populi YC-XJ1 with Diverse Xenobiotics Biodegrading Capacity and Degradation Characteristics of Related Hydrolase. ''Int J Mol Sci''. 2020 Jun 22; '''21''' (12):
Alterations of gut microbiota contribute to the progression of unruptured intracranial aneurysms. Description: Li, Hao, et al. Alterations of gut microbiota contribute to the progression of unruptured intracranial aneurysms. ''Nat Commun''. 2020 Jun 25; '''11''' (1):3218
Discovery of Two Novel Negeviruses in a Dungfly Collected from the Arctic. Description: Lu, Gang, et al. Discovery of Two Novel Negeviruses in a Dungfly Collected from the Arctic. ''Viruses''. 2020 Jun 27; '''12''' (7):
Dinuclear Copper(II) Complexes with Schiff Bases Derived from 2-Hydroxy-5-Methylisophthalaldehyde and Histamine or 2-(2-Aminoethyl)pyridine and Their Application as Magnetic and Fluorescent Materials in Thin Film Deposition. Description: Barwiolek, Magdalena, et al. Dinuclear Copper(II) Complexes with Schiff Bases Derived from 2-Hydroxy-5-Methylisophthalaldehyde and Histamine or 2-(2-Aminoethyl)pyridine and Their Application as Magnetic and Fluorescent Materials in Thin Film Deposition. ''Int J Mol Sci''. 2020 Jun 28; '''21''' (13):
An efficient single-cell transcriptomics workflow for microbial eukaryotes benchmarked on Giardia intestinalis cells. Description: Onsbring, Henning, et al. An efficient single-cell transcriptomics workflow for microbial eukaryotes benchmarked on Giardia intestinalis cells. ''BMC Genomics''. 2020 Jun 29; '''21''' (1):448
Characterization of the phenotypic and genotypic tolerance to abiotic stresses of natural populations of Heterorhabditis bacteriophora. Description: Levy, Noa, et al. Characterization of the phenotypic and genotypic tolerance to abiotic stresses of natural populations of Heterorhabditis bacteriophora. ''Sci Rep''. 2020 Jun 29; '''10''' (1):10500
Lateral Gene Transfer Drives Metabolic Flexibility in the Anaerobic Methane-Oxidizing Archaeal Family Methanoperedenaceae. Description: Leu, Andy O, et al. Lateral Gene Transfer Drives Metabolic Flexibility in the Anaerobic Methane-Oxidizing Archaeal Family Methanoperedenaceae. ''mBio''. 2020 Jun 30; '''11''' (3):
Secondary Metabolism in the Gill Microbiota of Shipworms (Teredinidae) as Revealed by Comparison of Metagenomes and Nearly Complete Symbiont Genomes. Description: Altamia, Marvin A, et al. Secondary Metabolism in the Gill Microbiota of Shipworms (Teredinidae) as Revealed by Comparison of Metagenomes and Nearly Complete Symbiont Genomes. ''mSystems''. 2020 Jun 30; '''5''' (3):
Soil as an extended composite phenotype of the microbial metagenome. Description: Neal, Andrew L, et al. Soil as an extended composite phenotype of the microbial metagenome. ''Sci Rep''. 2020 Jun 30; '''10''' (1):10649
Analysis of the virome associated to grapevine downy mildew lesions reveals new mycovirus lineages. Description: Chiapello, M, et al. Analysis of the virome associated to grapevine downy mildew lesions reveals new mycovirus lineages. ''Virus Evol''. 2020 Jul; '''6''' (2):veaa058
Genome and secretome analysis of jute endophyte Grammothele lineata strain SDL-CO-2015-1: Insights into its lignocellulolytic structure and secondary metabolite profile. Description: Ehsan, Tasneem, et al. Genome and secretome analysis of jute endophyte Grammothele lineata strain SDL-CO-2015-1: Insights into its lignocellulolytic structure and secondary metabolite profile. ''Genomics''. 2020 Jul; '''112''' (4):2794-2803
Genome wide underpinning of antagonistic and plant beneficial attributes of Bacillus sp. SBA12. Description: Salwan, Richa, et al. Genome wide underpinning of antagonistic and plant beneficial attributes of Bacillus sp. SBA12. ''Genomics''. 2020 Jul; '''112''' (4):2894-2902
NGS-based characterization of microbial diversity and functional profiling of solid tannery waste metagenomes. Description: Verma, Sumit Kumar, et al. NGS-based characterization of microbial diversity and functional profiling of solid tannery waste metagenomes. ''Genomics''. 2020 Jul; '''112''' (4):2903-2913
Novel hepaci- and pegi-like viruses in native Australian wildlife and non-human primates. Description: Porter, Ashleigh F, et al. Novel hepaci- and pegi-like viruses in native Australian wildlife and non-human primates. ''Virus Evol''. 2020 Jul; '''6''' (2):veaa064
A Novel Microbialite-Associated Phototrophic Chloroflexi Lineage Exhibiting a Quasi-Clonal Pattern along Depth. Description: Saghai, Aurelien, et al. A Novel Microbialite-Associated Phototrophic Chloroflexi Lineage Exhibiting a Quasi-Clonal Pattern along Depth. ''Genome Biol Evol''. 2020 Jul 1; '''12''' (7):1207-1216
Cooperation between passive and active silicon transporters clarifies the ecophysiology and evolution of biosilicification in sponges. Description: Maldonado, M, et al. Cooperation between passive and active silicon transporters clarifies the ecophysiology and evolution of biosilicification in sponges. ''Sci Adv''. 2020 Jul; '''6''' (28):eaba9322
Gray whale transcriptome reveals longevity adaptations associated with DNA repair and ubiquitination. Description: Toren, Dmitri, et al. Gray whale transcriptome reveals longevity adaptations associated with DNA repair and ubiquitination. ''Aging Cell''. 2020 Jul; '''19''' (7):
Host-microbiota interaction helps to explain the bottom-up effects of climate change on a small rodent species. Description: Li, Guoliang, et al. Host-microbiota interaction helps to explain the bottom-up effects of climate change on a small rodent species. ''ISME J''. 2020 Jul; '''14''' (7):1795-1808
Metagenomic Profiling of Ocular Surface Microbiome Changes in Meibomian Gland Dysfunction. Description: Zhao, Fuxin, et al. Metagenomic Profiling of Ocular Surface Microbiome Changes in Meibomian Gland Dysfunction. ''Invest Ophthalmol Vis Sci''. 2020 Jul 1; '''61''' (8):22
Raman-activated sorting of antibiotic-resistant bacteria in human gut microbiota. Description: Wang, Yi, et al. Raman-activated sorting of antibiotic-resistant bacteria in human gut microbiota. ''Environ Microbiol''. 2020 Jul; '''22''' (7):2613-2624
Shifts in microbial community, pathogenicity-related genes and antibiotic resistance genes during dairy manure piled up. Description: Zhang, Xu, et al. Shifts in microbial community, pathogenicity-related genes and antibiotic resistance genes during dairy manure piled up. ''Microb Biotechnol''. 2020 Jul; '''13''' (4):1039-1053
X-ray crystal structure localizes the mechanism of inhibition of an IL-36R antagonist monoclonal antibody to interaction with Ig1 and Ig2 extra cellular domains. Description: Larson, Eric T, et al. X-ray crystal structure localizes the mechanism of inhibition of an IL-36R antagonist monoclonal antibody to interaction with Ig1 and Ig2 extra cellular domains. ''Protein Sci''. 2020 Jul; '''29''' (7):1679-1686
Design, synthesis, and biological evaluation of new 6,N (2)-diaryl-1,3,5-triazine-2,4-diamines as anticancer agents selectively targeting triple negative breast cancer cells. Description: Junaid, Ahmad, et al. Design, synthesis, and biological evaluation of new 6,N (2)-diaryl-1,3,5-triazine-2,4-diamines as anticancer agents selectively targeting triple negative breast cancer cells. ''RSC Adv''. 2020 Jul 3; '''10''' (43):25517-25528
The Seminavis robusta genome provides insights into the evolutionary adaptations of benthic diatoms. Description: Osuna-Cruz, Cristina Maria, et al. The Seminavis robusta genome provides insights into the evolutionary adaptations of benthic diatoms. ''Nat Commun''. 2020 Jul 3; '''11''' (1):3320
Transcriptome Sequencing and Chemical Analysis Reveal the Formation Mechanism of White Florets in Carthamus tinctorius L. Description: Qiang, Tingyan, et al. Transcriptome Sequencing and Chemical Analysis Reveal the Formation Mechanism of White Florets in Carthamus tinctorius L. ''Plants (Basel)''. 2020 Jul 4; '''9''' (7):
The DIAMOND portal: An innovative platform for sharing translational research workforce training and assessment resources. Description: Ianni, Phillip A, et al. The DIAMOND portal: An innovative platform for sharing translational research workforce training and assessment resources. ''J Clin Transl Sci''. 2020 Jul 6; '''4''' (6):480-484
Atomic-Scale Tuning of Tsai-Type Clusters in RE-Au-Si Systems (RE = Gd, Tb, Ho). Description: Gebresenbut, Girma, et al. Atomic-Scale Tuning of Tsai-Type Clusters in RE-Au-Si Systems (RE = Gd, Tb, Ho). ''Inorg Chem''. 2020 Jul 6; '''59''' (13):9152-9162
Genetic dominance governs the evolution and spread of mobile genetic elements in bacteria. Description: Rodriguez-Beltran, Jeronimo, et al. Genetic dominance governs the evolution and spread of mobile genetic elements in bacteria. ''Proc Natl Acad Sci U S A''. 2020 Jul 7; '''117''' (27):15755-15762
QTG-Finder2: A Generalized Machine-Learning Algorithm for Prioritizing QTL Causal Genes in Plants. Description: Lin, Fan, et al. QTG-Finder2: A Generalized Machine-Learning Algorithm for Prioritizing QTL Causal Genes in Plants. ''G3 (Bethesda)''. 2020 Jul 7; '''10''' (7):2411-2421
Globally Abundant "Candidatus Udaeobacter" Benefits from Release of Antibiotics in Soil and Potentially Performs Trace Gas Scavenging. Description: Willms, Inka M, et al. Globally Abundant "Candidatus Udaeobacter" Benefits from Release of Antibiotics in Soil and Potentially Performs Trace Gas Scavenging. ''mSphere''. 2020 Jul 8; '''5''' (4):
Comparative Genomics of Stenotrophomonas maltophilia and Stenotrophomonas rhizophila Revealed Characteristic Features of Both Species. Description: Pinski, Artur, et al. Comparative Genomics of Stenotrophomonas maltophilia and Stenotrophomonas rhizophila Revealed Characteristic Features of Both Species. ''Int J Mol Sci''. 2020 Jul 12; '''21''' (14):
Gut microbiome signatures of nursing home residents carrying Enterobacteria producing extended-spectrum beta-lactamases. Description: Le Bastard, Quentin, et al. Gut microbiome signatures of nursing home residents carrying Enterobacteria producing extended-spectrum beta-lactamases. ''Antimicrob Resist Infect Control''. 2020 Jul 14; '''9''' (1):107
Dynamism of PI4-Phosphate during Interactions with Human Erythrocytes in Entamoeba histolytica. Description: Watanabe, Natsuki, et al. Dynamism of PI4-Phosphate during Interactions with Human Erythrocytes in Entamoeba histolytica. ''Microorganisms''. 2020 Jul 15; '''8''' (7):
Silver(I) Complexes of Two Flexible Bis-phospholane Ligands: Metallamacrocycles, Polymeric Chains, and Metallacryptands. Description: Boar, Paul, et al. Silver(I) Complexes of Two Flexible Bis-phospholane Ligands: Metallamacrocycles, Polymeric Chains, and Metallacryptands. ''Z Anorg Allg Chem''. 2020 Jul 15; '''646''' (13):915-922
Transcriptomic analysis of flower opening response to relatively low temperatures in Osmanthus fragrans. Description: Fu, Jianxin, et al. Transcriptomic analysis of flower opening response to relatively low temperatures in Osmanthus fragrans. ''BMC Plant Biol''. 2020 Jul 16; '''20''' (1):337
Multi-omics sequencing provides insight into floral transition in Catalpa bungei. C.A. Mey. Description: Wang, Zhi, et al. Multi-omics sequencing provides insight into floral transition in Catalpa bungei. C.A. Mey. ''BMC Genomics''. 2020 Jul 22; '''21''' (1):508
Complex Virome in a Mesenteric Lymph Node from a Californian Sea Lion (Zalophus Californianus) with Polyserositis and Steatitis. Description: Altan, Eda, et al. Complex Virome in a Mesenteric Lymph Node from a Californian Sea Lion (Zalophus Californianus) with Polyserositis and Steatitis. ''Viruses''. 2020 Jul 23; '''12''' (8):
A carbohydrate-active enzyme (CAZy) profile links successful metabolic specialization of Prevotella to its abundance in gut microbiota. Description: Aakko, Juhani, et al. A carbohydrate-active enzyme (CAZy) profile links successful metabolic specialization of Prevotella to its abundance in gut microbiota. ''Sci Rep''. 2020 Jul 24; '''10''' (1):12411
Cultivar-specific transcriptome and pan-transcriptome reconstruction of tetraploid potato. Description: Petek, Marko, et al. Cultivar-specific transcriptome and pan-transcriptome reconstruction of tetraploid potato. ''Sci Data''. 2020 Jul 24; '''7''' (1):249
Fungus-growing insects host a distinctive microbiota apparently adapted to the fungiculture environment. Description: Barcoto, Mariana O, et al. Fungus-growing insects host a distinctive microbiota apparently adapted to the fungiculture environment. ''Sci Rep''. 2020 Jul 24; '''10''' (1):12384
Comprehensive database and evolutionary dynamics of U12-type introns. Description: Moyer, Devlin C, et al. Comprehensive database and evolutionary dynamics of U12-type introns. ''Nucleic Acids Res''. 2020 Jul 27; '''48''' (13):7066-7078
Production of Paralytic Shellfish Toxins (PSTs) in Toxic Alexandrium catenella is Intertwined with Photosynthesis and Energy Production. Description: Tse, Sirius Pui-Kam, et al. Production of Paralytic Shellfish Toxins (PSTs) in Toxic Alexandrium catenella is Intertwined with Photosynthesis and Energy Production. ''Toxins (Basel)''. 2020 Jul 27; '''12''' (8):
Tracing animal genomic evolution with the chromosomal-level assembly of the freshwater sponge Ephydatia muelleri. Description: Kenny, Nathan J, et al. Tracing animal genomic evolution with the chromosomal-level assembly of the freshwater sponge Ephydatia muelleri. ''Nat Commun''. 2020 Jul 27; '''11''' (1):3676
A Distinct Contractile Injection System Gene Cluster Found in a Majority of Healthy Adult Human Microbiomes. Description: Rojas, Maria I, et al. A Distinct Contractile Injection System Gene Cluster Found in a Majority of Healthy Adult Human Microbiomes. ''mSystems''. 2020 Jul 28; '''5''' (4):
Consumption of a Western-Style Diet Modulates the Response of the Murine Gut Microbiome to Ciprofloxacin. Description: Cabral, Damien J, et al. Consumption of a Western-Style Diet Modulates the Response of the Murine Gut Microbiome to Ciprofloxacin. ''mSystems''. 2020 Jul 28; '''5''' (4):
Microbiome and Metagenome Analyses of a Closed Habitat during Human Occupation. Description: Malli Mohan, Ganesh Babu, et al. Microbiome and Metagenome Analyses of a Closed Habitat during Human Occupation. ''mSystems''. 2020 Jul 28; '''5''' (4):
Bovine Polyomavirus 2 is a Probable Cause of Non-Suppurative Encephalitis in Cattle. Description: Hierweger, Melanie M, et al. Bovine Polyomavirus 2 is a Probable Cause of Non-Suppurative Encephalitis in Cattle. ''Pathogens''. 2020 Jul 29; '''9''' (8):
Completion of draft bacterial genomes by long-read sequencing of synthetic genomic pools. Description: Derakhshani, Hooman, et al. Completion of draft bacterial genomes by long-read sequencing of synthetic genomic pools. ''BMC Genomics''. 2020 Jul 29; '''21''' (1):519
Analysis of DNA methylation differences in gonads of the large yellow croaker. Description: He, Amei, et al. Analysis of DNA methylation differences in gonads of the large yellow croaker. ''Gene''. 2020 Jul 30; '''749''': 144754
iTRAQ-based quantitative proteomic analysis of Colletotrichum lini reveals ethanol induced mechanism for enhancing dihydroxylation efficiency of DHEA. Description: Li, Hui, et al. iTRAQ-based quantitative proteomic analysis of Colletotrichum lini reveals ethanol induced mechanism for enhancing dihydroxylation efficiency of DHEA. ''J Proteomics''. 2020 Jul 30; '''224''': 103851
Metagenomic data-mining reveals enrichment of trimethylamine-N-oxide synthesis in gut microbiome in atrial fibrillation patients. Description: Zuo, Kun, et al. Metagenomic data-mining reveals enrichment of trimethylamine-N-oxide synthesis in gut microbiome in atrial fibrillation patients. ''BMC Genomics''. 2020 Jul 30; '''21''' (1):526
Evaluation of 1,2-Benzothiazine 1,1-dioxide Derivatives In Vitro Activity towards Clinical-Relevant Microorganisms and Fibroblasts. Description: Dudek-Wicher, Ruth K, et al. Evaluation of 1,2-Benzothiazine 1,1-dioxide Derivatives In Vitro Activity towards Clinical-Relevant Microorganisms and Fibroblasts. ''Molecules''. 2020 Jul 31; '''25''' (15):
Chlamydial contribution to anaerobic metabolism during eukaryotic evolution. Description: Stairs, Courtney W, et al. Chlamydial contribution to anaerobic metabolism during eukaryotic evolution. ''Sci Adv''. 2020 Aug; '''6''' (35):eabb7258
Combining whole-genome shotgun sequencing and rRNA gene amplicon analyses to improve detection of microbe-microbe interaction networks in plant leaves. Description: Regalado, Julian, et al. Combining whole-genome shotgun sequencing and rRNA gene amplicon analyses to improve detection of microbe-microbe interaction networks in plant leaves. ''ISME J''. 2020 Aug; '''14''' (8):2116-2130
Genome diversification in globally distributed novel marine Proteobacteria is linked to environmental adaptation. Description: Zhou, Zhichao, et al. Genome diversification in globally distributed novel marine Proteobacteria is linked to environmental adaptation. ''ISME J''. 2020 Aug; '''14''' (8):2060-2077
Genomic and transcriptomic evidence for descent from Plasmodium and loss of blood schizogony in Hepatocystis parasites from naturally infected red colobus monkeys. Description: Aunin, Eerik, et al. Genomic and transcriptomic evidence for descent from Plasmodium and loss of blood schizogony in Hepatocystis parasites from naturally infected red colobus monkeys. ''PLoS Pathog''. 2020 Aug; '''16''' (8):e1008717
Investigating population-scale allelic differential expression in wild populations of Oithona similis (Cyclopoida, Claus, 1866). Description: Laso-Jadart, Romuald, et al. Investigating population-scale allelic differential expression in wild populations of Oithona similis (Cyclopoida, Claus, 1866). ''Ecol Evol''. 2020 Aug; '''10''' (16):8894-8905
Selective carbon sources influence the end products of microbial nitrate respiration. Description: Carlson, Hans K, et al. Selective carbon sources influence the end products of microbial nitrate respiration. ''ISME J''. 2020 Aug; '''14''' (8):2034-2045
Spin Density Topology. Description: Bruno, Giovanna, et al. Spin Density Topology. ''Molecules''. 2020 Aug 2; '''25''' (15):
Identification of Conserved Gene-Regulatory Networks that Integrate Environmental Sensing and Growth in the Root Cambium. Description: Hoang, Nam V, et al. Identification of Conserved Gene-Regulatory Networks that Integrate Environmental Sensing and Growth in the Root Cambium. ''Curr Biol''. 2020 Aug 3; '''30''' (15):2887-2900.e7
Scion genotypes exert long distance control over rootstock transcriptome responses to low phosphate in grafted grapevine. Description: Gautier, Antoine T, et al. Scion genotypes exert long distance control over rootstock transcriptome responses to low phosphate in grafted grapevine. ''BMC Plant Biol''. 2020 Aug 3; '''20''' (1):367
The alteration of gut microbiome and metabolism in amyotrophic lateral sclerosis patients. Description: Zeng, Qianqian, et al. The alteration of gut microbiome and metabolism in amyotrophic lateral sclerosis patients. ''Sci Rep''. 2020 Aug 3; '''10''' (1):12998
Chikungunya virus Detection in Aedes aegypti and Culex quinquefasciatus during an Outbreak in the Amazon Region. Description: Ribeiro Cruz, Ana Cecilia, et al. Chikungunya virus Detection in Aedes aegypti and Culex quinquefasciatus during an Outbreak in the Amazon Region. ''Viruses''. 2020 Aug 4; '''12''' (8):
Synthesis and Biological Activity of New 7-Amino-oxazolo[5,4-d]Pyrimidine Derivatives. Description: Sochacka-Cwikla, Aleksandra, et al. Synthesis and Biological Activity of New 7-Amino-oxazolo[5,4-d]Pyrimidine Derivatives. ''Molecules''. 2020 Aug 4; '''25''' (15):
Genomic Analysis of Diverse Members of the Fungal Genus Monosporascus Reveals Novel Lineages, Unique Genome Content and a Potential Bacterial Associate. Description: Robinson, Aaron J, et al. Genomic Analysis of Diverse Members of the Fungal Genus Monosporascus Reveals Novel Lineages, Unique Genome Content and a Potential Bacterial Associate. ''G3 (Bethesda)''. 2020 Aug 5; '''10''' (8):2573-2583
Genomic and enzymatic evidence of acetogenesis by anaerobic methanotrophic archaea. Description: Yang, Shanshan, et al. Genomic and enzymatic evidence of acetogenesis by anaerobic methanotrophic archaea. ''Nat Commun''. 2020 Aug 7; '''11''' (1):3941
Network-based modeling of drug effects on disease module in systemic sclerosis. Description: Kim, Ki-Jo, et al. Network-based modeling of drug effects on disease module in systemic sclerosis. ''Sci Rep''. 2020 Aug 7; '''10''' (1):13393
Ruthenium(II) and Iridium(III) Complexes as Tested Materials for New Anticancer Agents. Description: Masternak, Joanna, et al. Ruthenium(II) and Iridium(III) Complexes as Tested Materials for New Anticancer Agents. ''Materials (Basel)''. 2020 Aug 7; '''13''' (16):
Undinarchaeota illuminate DPANN phylogeny and the impact of gene transfer on archaeal evolution. Description: Dombrowski, Nina, et al. Undinarchaeota illuminate DPANN phylogeny and the impact of gene transfer on archaeal evolution. ''Nat Commun''. 2020 Aug 7; '''11''' (1):3939
Adaptation of Coccomyxa sp. to Extremely Low Light Conditions Causes Deep Chlorophyll and Oxygen Maxima in Acidic Pit Lakes. Description: Sanchez-Espana, Javier, et al. Adaptation of Coccomyxa sp. to Extremely Low Light Conditions Causes Deep Chlorophyll and Oxygen Maxima in Acidic Pit Lakes. ''Microorganisms''. 2020 Aug 11; '''8''' (8):
Import of Entamoeba histolytica Mitosomal ATP Sulfurylase Relies on Internal Targeting Sequences. Description: Santos, Herbert J, et al. Import of Entamoeba histolytica Mitosomal ATP Sulfurylase Relies on Internal Targeting Sequences. ''Microorganisms''. 2020 Aug 12; '''8''' (8):
Platinum (IV) Recovery from Waste Solutions by Adsorption onto Dibenzo-30-crown-10 Ether Immobilized on Amberlite XAD7 Resin-Factorial Design Analysis. Description: Buriac, Oana, et al. Platinum (IV) Recovery from Waste Solutions by Adsorption onto Dibenzo-30-crown-10 Ether Immobilized on Amberlite XAD7 Resin-Factorial Design Analysis. ''Molecules''. 2020 Aug 13; '''25''' (16):
Characterization of integrated prophages within diverse species of clinical nontuberculous mycobacteria. Description: Glickman, Cody, et al. Characterization of integrated prophages within diverse species of clinical nontuberculous mycobacteria. ''Virol J''. 2020 Aug 17; '''17''' (1):124
Whole Genome Sequencing of SARS-CoV-2: Adapting Illumina Protocols for Quick and Accurate Outbreak Investigation during a Pandemic. Description: Pillay, Sureshnee, et al. Whole Genome Sequencing of SARS-CoV-2: Adapting Illumina Protocols for Quick and Accurate Outbreak Investigation during a Pandemic. ''Genes (Basel)''. 2020 Aug 17; '''11''' (8):
Seasonal dynamics and starvation impact on the gut microbiome of urochordate ascidian Halocynthia roretzi. Description: Wei, Jiankai, et al. Seasonal dynamics and starvation impact on the gut microbiome of urochordate ascidian Halocynthia roretzi. ''Anim Microbiome''. 2020 Aug 18; '''2''' (1):30
Synthesis, Structure and Supramolecular Properties of a Novel C3 Cryptand with Pyridine Units in the Bridges. Description: Crisan, Cosmin Vasile, et al. Synthesis, Structure and Supramolecular Properties of a Novel C3 Cryptand with Pyridine Units in the Bridges. ''Molecules''. 2020 Aug 20; '''25''' (17):
Composition and Metabolic Functions of the Microbiome in Fermented Grain during Light-Flavor Baijiu Fermentation. Description: Huang, Xiaoning, et al. Composition and Metabolic Functions of the Microbiome in Fermented Grain during Light-Flavor Baijiu Fermentation. ''Microorganisms''. 2020 Aug 22; '''8''' (9):
Anion-Dominated Copper Salicyaldimine Complexes-Structures, Coordination Mode of Nitrate and Decolorization Properties toward Acid Orange 7 Dye. Description: Tsai, Meng-Jung, et al. Anion-Dominated Copper Salicyaldimine Complexes-Structures, Coordination Mode of Nitrate and Decolorization Properties toward Acid Orange 7 Dye. ''Polymers (Basel)''. 2020 Aug 24; '''12''' (9):
The Gut Virome Database Reveals Age-Dependent Patterns of Virome Diversity in the Human Gut. Description: Gregory, Ann C, et al. The Gut Virome Database Reveals Age-Dependent Patterns of Virome Diversity in the Human Gut. ''Cell Host Microbe''. 2020 Aug 24;
Whole-genome sequencing and gene network modules predict gemcitabine/carboplatin-induced myelosuppression in non-small cell lung cancer patients. Description: Bjorn, Niclas, et al. Whole-genome sequencing and gene network modules predict gemcitabine/carboplatin-induced myelosuppression in non-small cell lung cancer patients. ''NPJ Syst Biol Appl''. 2020 Aug 24; '''6''' (1):25
Press Disturbance Alters Community Structure and Assembly Mechanisms of Bacterial Taxa and Functional Genes in Mesocosm-Scale Bioreactors. Description: Santillan, Ezequiel, et al. Press Disturbance Alters Community Structure and Assembly Mechanisms of Bacterial Taxa and Functional Genes in Mesocosm-Scale Bioreactors. ''mSystems''. 2020 Aug 25; '''5''' (4):
Insights into the Vertical Stratification of Microbial Ecological Roles across the Deepest Seawater Column on Earth. Description: Xue, Chun-Xu, et al. Insights into the Vertical Stratification of Microbial Ecological Roles across the Deepest Seawater Column on Earth. ''Microorganisms''. 2020 Aug 27; '''8''' (9):
Integrated microbiota and metabolite profiles link Crohn's disease to sulfur metabolism. Description: Metwaly, Amira, et al. Integrated microbiota and metabolite profiles link Crohn's disease to sulfur metabolism. ''Nat Commun''. 2020 Aug 28; '''11''' (1):4322
The Virome of Acute Respiratory Diseases in Individuals at Risk of Zoonotic Infections. Description: Thi Kha Tu, Nguyen, et al. The Virome of Acute Respiratory Diseases in Individuals at Risk of Zoonotic Infections. ''Viruses''. 2020 Aug 29; '''12''' (9):
Polymorphs and pharmacokinetics of an antipsychotic drug candidate. Description: Hao, Chao, et al. Polymorphs and pharmacokinetics of an antipsychotic drug candidate. ''Int J Pharm''. 2020 Aug 30; '''586''': 119600
A complex virome including two distinct emaraviruses associated with virus-like symptoms in Camellia japonica. Description: Peracchio, C, et al. A complex virome including two distinct emaraviruses associated with virus-like symptoms in Camellia japonica. ''Virus Res''. 2020 Sep; '''286''': 197964
A series of four novel alkaline earth metal-organic frameworks constructed of Ca(ii), Sr(ii), Ba(ii) ions and tetrahedral MTB linker: structural diversity, stability study and low/high-pressure gas adsorption properties. Description: Almasi, Miroslav, et al. A series of four novel alkaline earth metal-organic frameworks constructed of Ca(ii), Sr(ii), Ba(ii) ions and tetrahedral MTB linker: structural diversity, stability study and low/high-pressure gas adsorption properties. ''RSC Adv''. 2020 Sep 1; '''10''' (54):32323-32334
Genome and sequence determinants governing the expression of horizontally acquired DNA in bacteria. Description: Gomes, Antonio L C, et al. Genome and sequence determinants governing the expression of horizontally acquired DNA in bacteria. ''ISME J''. 2020 Sep; '''14''' (9):2347-2357
Metabolic mechanisms of Coilia nasus in the natural food intake state during migration. Description: Yin, Denghua, et al. Metabolic mechanisms of Coilia nasus in the natural food intake state during migration. ''Genomics''. 2020 Sep; '''112''' (5):3294-3305
Genomic insights into a plant growth-promoting Pseudomonas koreensis strain with cyclic lipopeptide-mediated antifungal activity. Description: Gu, Yilin, et al. Genomic insights into a plant growth-promoting Pseudomonas koreensis strain with cyclic lipopeptide-mediated antifungal activity. ''Microbiologyopen''. 2020 Sep; '''9''' (9):e1092
The synergistic hepatoprotective potential of Beta vulgaris juice and 2,3- dimercaptosuccinic acid in lead-intoxicated rats via improving the hepatic oxidative and inflammatory stress. Description: Shaban, Nadia Z, et al. The synergistic hepatoprotective potential of Beta vulgaris juice and 2,3- dimercaptosuccinic acid in lead-intoxicated rats via improving the hepatic oxidative and inflammatory stress. ''BMC Complement Med Ther''. 2020 Sep 1; '''20''' (1):268
Large-Scale Comparative Analyses of Tick Genomes Elucidate Their Genetic Diversity and Vector Capacities. Description: Jia, Na, et al. Large-Scale Comparative Analyses of Tick Genomes Elucidate Their Genetic Diversity and Vector Capacities. ''Cell''. 2020 Sep 3; '''182''' (5):1328-1340.e13
1200 high-quality metagenome-assembled genomes from the rumen of African cattle and their relevance in the context of sub-optimal feeding. Description: Wilkinson, Toby, et al. 1200 high-quality metagenome-assembled genomes from the rumen of African cattle and their relevance in the context of sub-optimal feeding. ''Genome Biol''. 2020 Sep 3; '''21''' (1):229
Bacteria Belonging to Pseudomonas typographi sp. nov. from the Bark Beetle Ips typographus Have Genomic Potential to Aid in the Host Ecology. Description: Peral-Aranega, Ezequiel, et al. Bacteria Belonging to Pseudomonas typographi sp. nov. from the Bark Beetle Ips typographus Have Genomic Potential to Aid in the Host Ecology. ''Insects''. 2020 Sep 3; '''11''' (9):
LSTrAP-Crowd: prediction of novel components of bacterial ribosomes with crowd-sourced analysis of RNA sequencing data. Description: Hew, Benedict, et al. LSTrAP-Crowd: prediction of novel components of bacterial ribosomes with crowd-sourced analysis of RNA sequencing data. ''BMC Biol''. 2020 Sep 3; '''18''' (1):114
Exploring the Remarkable Diversity of Culturable Escherichia coli Phages in the Danish Wastewater Environment. Description: Olsen, Nikoline S, et al. Exploring the Remarkable Diversity of Culturable Escherichia coli Phages in the Danish Wastewater Environment. ''Viruses''. 2020 Sep 4; '''12''' (9):
Metagenomic and Metatranscriptomic Study of Microbial Metal Resistance in an Acidic Pit Lake. Description: Ayala-Munoz, Diana, et al. Metagenomic and Metatranscriptomic Study of Microbial Metal Resistance in an Acidic Pit Lake. ''Microorganisms''. 2020 Sep 4; '''8''' (9):
Meta-transcriptomic identification of Trypanosoma spp. in native wildlife species from Australia. Description: Ortiz-Baez, Ayda Susana, et al. Meta-transcriptomic identification of Trypanosoma spp. in native wildlife species from Australia. ''Parasit Vectors''. 2020 Sep 5; '''13''' (1):447
Conserved Patterns in Developmental Processes and Phases, Rather than Genes, Unite the Highly Divergent Bilateria. Description: Ferretti, Luca, et al. Conserved Patterns in Developmental Processes and Phases, Rather than Genes, Unite the Highly Divergent Bilateria. ''Life (Basel)''. 2020 Sep 6; '''10''' (9):
Prebiotics and Community Composition Influence Gas Production of the Human Gut Microbiota. Description: Yu, Xiaoqian, et al. Prebiotics and Community Composition Influence Gas Production of the Human Gut Microbiota. ''mBio''. 2020 Sep 8; '''11''' (5):
Bacteroides thetaiotaomicron-Infecting Bacteriophage Isolates Inform Sequence-Based Host Range Predictions. Description: Hryckowian, Andrew J, et al. Bacteroides thetaiotaomicron-Infecting Bacteriophage Isolates Inform Sequence-Based Host Range Predictions. ''Cell Host Microbe''. 2020 Sep 9; '''28''' (3):371-379.e5
Metagenomic Analysis of the Virome of Mosquito Excreta. Description: Ramirez, Ana L, et al. Metagenomic Analysis of the Virome of Mosquito Excreta. ''mSphere''. 2020 Sep 9; '''5''' (5):
Nanoparticle treatment of maize analyzed through the metatranscriptome: compromised nitrogen cycling, possible phytopathogen selection, and plant hormesis. Description: Sillen, Wouter M A, et al. Nanoparticle treatment of maize analyzed through the metatranscriptome: compromised nitrogen cycling, possible phytopathogen selection, and plant hormesis. ''Microbiome''. 2020 Sep 9; '''8''' (1):127
Estimating the quality of eukaryotic genomes recovered from metagenomic analysis with EukCC. Description: Saary, Paul, et al. Estimating the quality of eukaryotic genomes recovered from metagenomic analysis with EukCC. ''Genome Biol''. 2020 Sep 10; '''21''' (1):244
Identification, Characterization, and Genomic Analysis of Novel Serratia Temperate Phages from a Gold Mine. Description: Bujak, Katarzyna, et al. Identification, Characterization, and Genomic Analysis of Novel Serratia Temperate Phages from a Gold Mine. ''Int J Mol Sci''. 2020 Sep 13; '''21''' (18):
From 1D Coordination Polymers to Metal Organic Frameworks by the Use of 2-Pyridyl Oximes. Description: Mylonas-Margaritis, Ioannis, et al. From 1D Coordination Polymers to Metal Organic Frameworks by the Use of 2-Pyridyl Oximes. ''Materials (Basel)''. 2020 Sep 14; '''13''' (18):
TreeSAPP: the Tree-based Sensitive and Accurate Phylogenetic Profiler. Description: Morgan-Lang, Connor, et al. TreeSAPP: the Tree-based Sensitive and Accurate Phylogenetic Profiler. ''Bioinformatics''. 2020 Sep 15; '''36''' (18):4706-4713
Bacteria Contribute to Plant Secondary Compound Degradation in a Generalist Herbivore System. Description: Francoeur, Charlotte B, et al. Bacteria Contribute to Plant Secondary Compound Degradation in a Generalist Herbivore System. ''mBio''. 2020 Sep 15; '''11''' (5):
Global landscape of phenazine biosynthesis and biodegradation reveals species-specific colonization patterns in agricultural soils and crop microbiomes. Description: Dar, Daniel, et al. Global landscape of phenazine biosynthesis and biodegradation reveals species-specific colonization patterns in agricultural soils and crop microbiomes. ''Elife''. 2020 Sep 15; '''9''':
Reclassification of the Taxonomic Framework of Orders Cellvibrionales, Oceanospirillales, Pseudomonadales, and Alteromonadales in Class Gammaproteobacteria through Phylogenomic Tree Analysis. Description: Liao, Hu, et al. Reclassification of the Taxonomic Framework of Orders Cellvibrionales, Oceanospirillales, Pseudomonadales, and Alteromonadales in Class Gammaproteobacteria through Phylogenomic Tree Analysis. ''mSystems''. 2020 Sep 15; '''5''' (5):
Harnessing the strategy of metagenomics for exploring the intestinal microecology of sable (Martes zibellina), the national first-level protected animal. Description: Yan, Jiakuo, et al. Harnessing the strategy of metagenomics for exploring the intestinal microecology of sable (Martes zibellina), the national first-level protected animal. ''AMB Express''. 2020 Sep 18; '''10''' (1):169
Adaptation mechanism of mango fruit (Mangifera indica L. cv. Chaunsa White) to heat suggest modulation in several metabolic pathways. Description: Khanum, Zainab, et al. Adaptation mechanism of mango fruit (Mangifera indica L. cv. Chaunsa White) to heat suggest modulation in several metabolic pathways. ''RSC Adv''. 2020 Sep 21; '''10''' (58):35531-35544
Metagenomic Insights into the Sewage RNA Virosphere of a Large City. Description: Guajardo-Leiva, Sergio, et al. Metagenomic Insights into the Sewage RNA Virosphere of a Large City. ''Viruses''. 2020 Sep 21; '''12''' (9):
Clinical relevance of plasma virome dynamics in liver transplant recipients. Description: Thijssen, Marijn, et al. Clinical relevance of plasma virome dynamics in liver transplant recipients. ''EBioMedicine''. 2020 Sep 23; '''60''': 103009
Complete genome sequence of fish-pathogenic Aeromonas hydrophila HX-3 and a comparative analysis: insights into virulence factors and quorum sensing. Description: Jin, Lei, et al. Complete genome sequence of fish-pathogenic Aeromonas hydrophila HX-3 and a comparative analysis: insights into virulence factors and quorum sensing. ''Sci Rep''. 2020 Sep 23; '''10''' (1):15479
Stability of the Virome in Lab- and Field-Collected Aedes albopictus Mosquitoes across Different Developmental Stages and Possible Core Viruses in the Publicly Available Virome Data of Aedes Mosquitoes. Description: Shi, Chenyan, et al. Stability of the Virome in Lab- and Field-Collected Aedes albopictus Mosquitoes across Different Developmental Stages and Possible Core Viruses in the Publicly Available Virome Data of Aedes Mosquitoes. ''mSystems''. 2020 Sep 29; '''5''' (5):
Transcriptome characterization of BPG axis and expression profiles of ovarian steroidogenesis-related genes in the Japanese sardine. Description: Nyuji, Mitsuo, et al. Transcriptome characterization of BPG axis and expression profiles of ovarian steroidogenesis-related genes in the Japanese sardine. ''BMC Genomics''. 2020 Sep 29; '''21''' (1):668
Improved Reference Genome Uncovers Novel Sex-Linked Regions in the Guppy (Poecilia reticulata). Description: Fraser, Bonnie A, et al. Improved Reference Genome Uncovers Novel Sex-Linked Regions in the Guppy (Poecilia reticulata). ''Genome Biol Evol''. 2020 Oct 1; '''12''' (10):1789-1805
Large losses of ammonium-nitrogen from a rice ecosystem under elevated CO(2). Description: Xu, Chenchao, et al. Large losses of ammonium-nitrogen from a rice ecosystem under elevated CO(2). ''Sci Adv''. 2020 Oct; '''6''' (42):
Metagenomics approach the intestinal microbiome structure and function in the anti-H1N1 of a traditional chinese medicine acid polysaccharide. Description: Xiaoting, Lin, et al. Metagenomics approach the intestinal microbiome structure and function in the anti-H1N1 of a traditional chinese medicine acid polysaccharide. ''Microb Pathog''. 2020 Oct; '''147''': 104351
Transcriptome analysis of the Larimichthys polyactis under heat and cold stress. Description: Chu, Tianqi, et al. Transcriptome analysis of the Larimichthys polyactis under heat and cold stress. ''Cryobiology''. 2020 Oct; '''96''': 175-183
Anaerobic metabolism of Foraminifera thriving below the seafloor. Description: Orsi, William D, et al. Anaerobic metabolism of Foraminifera thriving below the seafloor. ''ISME J''. 2020 Oct; '''14''' (10):2580-2594
Comparative Genome Analysis Reveals Natural Variations in the Genomes of Erwinia pyrifoliae, a Black Shoot Blight Pathogen in Apple and Pear. Description: Lee, Gyu Min, et al. Comparative Genome Analysis Reveals Natural Variations in the Genomes of Erwinia pyrifoliae, a Black Shoot Blight Pathogen in Apple and Pear. ''Plant Pathol J''. 2020 Oct 1; '''36''' (5):428-439
Coronavirus discovery by metagenomic sequencing: a tool for pandemic preparedness. Description: Carbo, Ellen C, et al. Coronavirus discovery by metagenomic sequencing: a tool for pandemic preparedness. ''J Clin Virol''. 2020 Oct; '''131''': 104594
Dental Calculus as a Tool to Study the Evolution of the Mammalian Oral Microbiome. Description: Brealey, Jaelle C, et al. Dental Calculus as a Tool to Study the Evolution of the Mammalian Oral Microbiome. ''Mol Biol Evol''. 2020 Oct 1; '''37''' (10):3003-3022
Divergence of metabolites in three phylogenetically close Monascus species (M. pilosus, M. ruber, and M. purpureus) based on secondary metabolite biosynthetic gene clusters. Description: Higa, Yuki, et al. Divergence of metabolites in three phylogenetically close Monascus species (M. pilosus, M. ruber, and M. purpureus) based on secondary metabolite biosynthetic gene clusters. ''BMC Genomics''. 2020 Oct 1; '''21''' (1):679
Rational design of balanced dual-targeting antibiotics with limited resistance. Description: Nyerges, Akos, et al. Rational design of balanced dual-targeting antibiotics with limited resistance. ''PLoS Biol''. 2020 Oct; '''18''' (10):e3000819
Transcriptomic data on the transgenerational exposure of the keystone amphipod Gammarus locusta to simvastatin. Description: Neuparth, Teresa, et al. Transcriptomic data on the transgenerational exposure of the keystone amphipod Gammarus locusta to simvastatin. ''Data Brief''. 2020 Oct; '''32''': 106248
A Novel RNA Virus, Macrobrachium rosenbergii Golda Virus (MrGV), Linked to Mass Mortalities of the Larval Giant Freshwater Prawn in Bangladesh. Description: Hooper, Chantelle, et al. A Novel RNA Virus, Macrobrachium rosenbergii Golda Virus (MrGV), Linked to Mass Mortalities of the Larval Giant Freshwater Prawn in Bangladesh. ''Viruses''. 2020 Oct 2; '''12''' (10):
C3: connect separate connected components to form a succinct disease module. Description: Wang, Bingbo, et al. C3: connect separate connected components to form a succinct disease module. ''BMC Bioinformatics''. 2020 Oct 2; '''21''' (1):433
Densification, Microstructure, and Mechanical Properties of Additively Manufactured 2124 Al-Cu Alloy by Selective Laser Melting. Description: Deng, Junwang, et al. Densification, Microstructure, and Mechanical Properties of Additively Manufactured 2124 Al-Cu Alloy by Selective Laser Melting. ''Materials (Basel)''. 2020 Oct 5; '''13''' (19):
Reference Genome for the Highly Transformable Setaria viridis ME034V. Description: Thielen, Peter M, et al. Reference Genome for the Highly Transformable Setaria viridis ME034V. ''G3 (Bethesda)''. 2020 Oct 5; '''10''' (10):3467-3478
Insights into Ammonia Adaptation and Methanogenic Precursor Oxidation by Genome-Centric Analysis. Description: Yan, Miao, et al. Insights into Ammonia Adaptation and Methanogenic Precursor Oxidation by Genome-Centric Analysis. ''Environ Sci Technol''. 2020 Oct 6; '''54''' (19):12568-12582
Atribacteria Reproducing over Millions of Years in the Atlantic Abyssal Subseafloor. Description: Vuillemin, Aurele, et al. Atribacteria Reproducing over Millions of Years in the Atlantic Abyssal Subseafloor. ''mBio''. 2020 Oct 6; '''11''' (5):
The Evolutionary Success of the Marine Bacterium SAR11 Analyzed through a Metagenomic Perspective. Description: Lopez-Perez, Mario, et al. The Evolutionary Success of the Marine Bacterium SAR11 Analyzed through a Metagenomic Perspective. ''mSystems''. 2020 Oct 6; '''5''' (5):
Predicting toxins found in toxin-antitoxin systems with a role in host-induced Burkholderia pseudomallei persistence. Description: Ross, Brittany N, et al. Predicting toxins found in toxin-antitoxin systems with a role in host-induced Burkholderia pseudomallei persistence. ''Sci Rep''. 2020 Oct 9; '''10''' (1):16923
Metagenomic insights into the diversity of carbohydrate-degrading enzymes in the yak fecal microbial community. Description: Gong, Ga, et al. Metagenomic insights into the diversity of carbohydrate-degrading enzymes in the yak fecal microbial community. ''BMC Microbiol''. 2020 Oct 10; '''20''' (1):302
Synthesis, spectroscopy, crystal structure, TGA/DTA study, DFT and molecular docking investigations of (E)-4-(4-methylbenzyl)-6-styrylpyridazin-3(2H)-one. Description: Kalai, Fouad El, et al. Synthesis, spectroscopy, crystal structure, TGA/DTA study, DFT and molecular docking investigations of (E)-4-(4-methylbenzyl)-6-styrylpyridazin-3(2H)-one. ''J Mol Struct''. 2020 Oct 10; 129435
In silico benchmarking of metagenomic tools for coding sequence detection reveals the limits of sensitivity and precision. Description: Golob, Jonathan Louis, et al. In silico benchmarking of metagenomic tools for coding sequence detection reveals the limits of sensitivity and precision. ''BMC Bioinformatics''. 2020 Oct 15; '''21''' (1):459
Single crystalline quaternary sulfide nanobelts for efficient solar-to-hydrogen conversion. Description: Wu, Liang, et al. Single crystalline quaternary sulfide nanobelts for efficient solar-to-hydrogen conversion. ''Nat Commun''. 2020 Oct 15; '''11''' (1):5194
Anti-biofilm Fe3O4@C18-[1,3,4]thiadiazolo[3,2-a]pyrimidin-4-ium-2-thiolate Derivative Core-shell Nanocoatings. Description: Olar, Rodica, et al. Anti-biofilm Fe3O4@C18-[1,3,4]thiadiazolo[3,2-a]pyrimidin-4-ium-2-thiolate Derivative Core-shell Nanocoatings. ''Materials (Basel)''. 2020 Oct 17; '''13''' (20):
Genome-wide analysis and prediction of genes involved in the biosynthesis of polysaccharides and bioactive secondary metabolites in high-temperature-tolerant wild Flammulina filiformis. Description: Chen, Juan, et al. Genome-wide analysis and prediction of genes involved in the biosynthesis of polysaccharides and bioactive secondary metabolites in high-temperature-tolerant wild Flammulina filiformis. ''BMC Genomics''. 2020 Oct 17; '''21''' (1):719
Metagenomic characterization of bacterial community and antibiotic resistance genes in representative ready-to-eat food in southern China. Description: Li, YiMing, et al. Metagenomic characterization of bacterial community and antibiotic resistance genes in representative ready-to-eat food in southern China. ''Sci Rep''. 2020 Oct 22; '''10''' (1):15175
Comparative analyses of saprotrophy in Salisapilia sapeloensis and diverse plant pathogenic oomycetes reveal lifestyle-specific gene expression. Description: de Vries, Sophie, et al. Comparative analyses of saprotrophy in Salisapilia sapeloensis and diverse plant pathogenic oomycetes reveal lifestyle-specific gene expression. ''FEMS Microbiol Ecol''. 2020 Oct 24; '''96''' (11):
Experimental and Theoretical Studies of a Spirostannole and Formation of a Pentaorganostannate. Description: Ramirez Y Medina, Isabel-Maria, et al. Experimental and Theoretical Studies of a Spirostannole and Formation of a Pentaorganostannate. ''Molecules''. 2020 Oct 28; '''25''' (21):
Staphylococcal Protein A (spa) Locus Is a Hot Spot for Recombination and Horizontal Gene Transfer in Staphylococcus pseudintermedius. Description: Zukancic, Alem, et al. Staphylococcal Protein A (spa) Locus Is a Hot Spot for Recombination and Horizontal Gene Transfer in Staphylococcus pseudintermedius. ''mSphere''. 2020 Oct 28; '''5''' (5):
Comparative Genomic Analysis of Dactylonectria torresensis Strains from Grapevine, Soil and Weed Highlights Potential Mechanisms in Pathogenicity and Endophytic Lifestyle. Description: Gramaje, David, et al. Comparative Genomic Analysis of Dactylonectria torresensis Strains from Grapevine, Soil and Weed Highlights Potential Mechanisms in Pathogenicity and Endophytic Lifestyle. ''J Fungi (Basel)''. 2020 Oct 29; '''6''' (4):
Ameliorative Effect of Graviola (Annona muricata) on Mono Sodium Glutamate-Induced Hepatic Injury in Rats: Antioxidant, Apoptotic, Anti-inflammatory, Lipogenesis Markers, and Histopathological Studies. Description: Shukry, Mustafa, et al. Ameliorative Effect of Graviola (Annona muricata) on Mono Sodium Glutamate-Induced Hepatic Injury in Rats: Antioxidant, Apoptotic, Anti-inflammatory, Lipogenesis Markers, and Histopathological Studies. ''Animals (Basel)''. 2020 Oct 30; '''10''' (11):
Uncovering the genomic potential of the Amazon River microbiome to degrade rainforest organic matter. Description: Santos-Junior, Celio Dias, et al. Uncovering the genomic potential of the Amazon River microbiome to degrade rainforest organic matter. ''Microbiome''. 2020 Oct 30; '''8''' (1):151
A comparative 30-day outcome analysis of inpatient evaluation vs outpatient testing in patients presenting with chest pain in the high-sensitivity troponin era. A propensity score matched case-control retrospective study. Description: Mahmoud, Osama, et al. A comparative 30-day outcome analysis of inpatient evaluation vs outpatient testing in patients presenting with chest pain in the high-sensitivity troponin era. A propensity score matched case-control retrospective study. ''Clin Cardiol''. 2020 Nov; '''43''' (11):1248-1254
Ancestral state reconstruction of metabolic pathways across pangenome ensembles. Description: Psomopoulos, Fotis E, et al. Ancestral state reconstruction of metabolic pathways across pangenome ensembles. ''Microb Genom''. 2020 Nov; '''6''' (11):
Cross-scanner and cross-protocol multi-shell diffusion MRI data harmonization: Algorithms and results. Description: Ning, Lipeng, et al. Cross-scanner and cross-protocol multi-shell diffusion MRI data harmonization: Algorithms and results. ''Neuroimage''. 2020 Nov 1; '''221''': 117128
Quantitative microbiome profiling links microbial community variation to the intestine regeneration rate of the sea cucumber Apostichopus japonicus. Description: Zhang, Hongxia, et al. Quantitative microbiome profiling links microbial community variation to the intestine regeneration rate of the sea cucumber Apostichopus japonicus. ''Genomics''. 2020 Nov; '''112''' (6):5012-5020
Termite mounds contain soil-derived methanotroph communities kinetically adapted to elevated methane concentrations. Description: Chiri, Eleonora, et al. Termite mounds contain soil-derived methanotroph communities kinetically adapted to elevated methane concentrations. ''ISME J''. 2020 Nov; '''14''' (11):2715-2731
Unravelling lactate-acetate and sugar conversion into butyrate by intestinal Anaerobutyricum and Anaerostipes species by comparative proteogenomics. Description: Shetty, Sudarshan A, et al. Unravelling lactate-acetate and sugar conversion into butyrate by intestinal Anaerobutyricum and Anaerostipes species by comparative proteogenomics. ''Environ Microbiol''. 2020 Nov; '''22''' (11):4863-4875
Southern Chinese populations harbour non-nucleatum Fusobacteria possessing homologues of the colorectal cancer-associated FadA virulence factor. Description: Yeoh, Yun Kit, et al. Southern Chinese populations harbour non-nucleatum Fusobacteria possessing homologues of the colorectal cancer-associated FadA virulence factor. ''Gut''. 2020 Nov; '''69''' (11):1998-2007
Chromosome-Level Assembly of the Common Lizard (Zootoca vivipara) Genome. Description: Yurchenko, Andrey A, et al. Chromosome-Level Assembly of the Common Lizard (Zootoca vivipara) Genome. ''Genome Biol Evol''. 2020 Nov 3; '''12''' (11):1953-1960
From Inquilines to Gall Inducers: Genomic Signature of a Life-Style Transition in Synergus Gall Wasps. Description: Gobbo, Erik, et al. From Inquilines to Gall Inducers: Genomic Signature of a Life-Style Transition in Synergus Gall Wasps. ''Genome Biol Evol''. 2020 Nov 3; '''12''' (11):2060-2073
Short De-Etiolation Increases the Rooting of VC801 Avocado Rootstock. Description: Duman, Zvi, et al. Short De-Etiolation Increases the Rooting of VC801 Avocado Rootstock. ''Plants (Basel)''. 2020 Nov 3; '''9''' (11):
Metagenomic Analysis of the Enteric RNA Virome of Infants from the Oukasie Clinic, North West Province, South Africa, Reveals Diverse Eukaryotic Viruses. Description: Mogotsi, Milton T, et al. Metagenomic Analysis of the Enteric RNA Virome of Infants from the Oukasie Clinic, North West Province, South Africa, Reveals Diverse Eukaryotic Viruses. ''Viruses''. 2020 Nov 5; '''12''' (11):
A Novel Anphevirus in Aedes albopictus Mosquitoes Is Distributed Worldwide and Interacts with the Host RNA Interference Pathway. Description: Manni, Mose, et al. A Novel Anphevirus in Aedes albopictus Mosquitoes Is Distributed Worldwide and Interacts with the Host RNA Interference Pathway. ''Viruses''. 2020 Nov 6; '''12''' (11):
Biaryl Sulfonamides Based on the 2-Azabicycloalkane Skeleton-Synthesis and Antiproliferative Activity. Description: Iwan, Dominika, et al. Biaryl Sulfonamides Based on the 2-Azabicycloalkane Skeleton-Synthesis and Antiproliferative Activity. ''Materials (Basel)''. 2020 Nov 6; '''13''' (21):
Genomic and phenotypic analysis of COVID-19-associated pulmonary aspergillosis isolates of Aspergillus fumigatus. Description: Steenwyk, Jacob L, et al. Genomic and phenotypic analysis of COVID-19-associated pulmonary aspergillosis isolates of Aspergillus fumigatus. ''bioRxiv''. 2020 Nov 6;
In Silico Characterization and Phylogenetic Distribution of Extracellular Matrix Components in the Model Rhizobacteria Pseudomonas fluorescens F113 and Other Pseudomonads. Description: Blanco-Romero, Esther, et al. In Silico Characterization and Phylogenetic Distribution of Extracellular Matrix Components in the Model Rhizobacteria Pseudomonas fluorescens F113 and Other Pseudomonads. ''Microorganisms''. 2020 Nov 6; '''8''' (11):
Long-Term Cost-Effectiveness the Dexcom G6 Real-Time Continuous Glucose Monitoring System Compared with Self-Monitoring of Blood Glucose in People with Type 1 Diabetes in France. Description: Roze, Stephane, et al. Long-Term Cost-Effectiveness the Dexcom G6 Real-Time Continuous Glucose Monitoring System Compared with Self-Monitoring of Blood Glucose in People with Type 1 Diabetes in France. ''Diabetes Ther''. 2020 Nov 9;
Metagenomics reveals impact of geography and acute diarrheal disease on the Central Indian human gut microbiome. Description: Monaghan, Tanya M, et al. Metagenomics reveals impact of geography and acute diarrheal disease on the Central Indian human gut microbiome. ''Gut Microbes''. 2020 Nov 9; '''12''' (1):1752605
The Unexplored Virome of Two Atlantic Coast Fish: Contribution of Next-Generation Sequencing to Fish Virology. Description: Filipa-Silva, Andreia, et al. The Unexplored Virome of Two Atlantic Coast Fish: Contribution of Next-Generation Sequencing to Fish Virology. ''Foods''. 2020 Nov 9; '''9''' (11):
A compromised developmental trajectory of the infant gut microbiome and metabolome in atopic eczema. Description: Ta, Le Duc Huy, et al. A compromised developmental trajectory of the infant gut microbiome and metabolome in atopic eczema. ''Gut Microbes''. 2020 Nov 9; '''12''' (1):1-22
Linear and branched beta-Glucans degrading enzymes from versatile Bacteroides uniformis JCM 13288(T) and their roles in cooperation with gut bacteria. Description: Singh, Ravindra Pal, et al. Linear and branched beta-Glucans degrading enzymes from versatile Bacteroides uniformis JCM 13288(T) and their roles in cooperation with gut bacteria. ''Gut Microbes''. 2020 Nov 9; '''12''' (1):1-18
The gut microbiome stability is altered by probiotic ingestion and improved by the continuous supplementation of galactooligosaccharide. Description: Ma, Chenchen, et al. The gut microbiome stability is altered by probiotic ingestion and improved by the continuous supplementation of galactooligosaccharide. ''Gut Microbes''. 2020 Nov 9; '''12''' (1):1785252
De novo assembly and analysis of the transcriptome of the Dermacentor marginatus genes differentially expressed after blood-feeding and long-term starvation. Description: Hu, Ercha, et al. De novo assembly and analysis of the transcriptome of the Dermacentor marginatus genes differentially expressed after blood-feeding and long-term starvation. ''Parasit Vectors''. 2020 Nov 10; '''13''' (1):563
Molecular signatures of the rediae, cercariae and adult stages in the complex life cycles of parasitic flatworms (Digenea: Psilostomatidae). Description: Nesterenko, Maksim A, et al. Molecular signatures of the rediae, cercariae and adult stages in the complex life cycles of parasitic flatworms (Digenea: Psilostomatidae). ''Parasit Vectors''. 2020 Nov 10; '''13''' (1):559
Diversity, function and assembly of mangrove root-associated microbial communities at a continuous fine-scale. Description: Zhuang, Wei, et al. Diversity, function and assembly of mangrove root-associated microbial communities at a continuous fine-scale. ''NPJ Biofilms Microbiomes''. 2020 Nov 12; '''6''' (1):52
Identification of Novel Astroviruses in the Gastrointestinal Tract of Domestic Cats. Description: Brussel, Kate Van, et al. Identification of Novel Astroviruses in the Gastrointestinal Tract of Domestic Cats. ''Viruses''. 2020 Nov 12; '''12''' (11):
Comparative Genomics Reveals Novel Target Genes towards Specific Control of Plant-Parasitic Nematodes. Description: Grynberg, Priscila, et al. Comparative Genomics Reveals Novel Target Genes towards Specific Control of Plant-Parasitic Nematodes. ''Genes (Basel)''. 2020 Nov 13; '''11''' (11):
Integrative analysis of wood biomass and developing xylem transcriptome provide insights into mechanisms of lignin biosynthesis in wood formation of Pinus massoniana. Description: Ni, Zhouxian, et al. Integrative analysis of wood biomass and developing xylem transcriptome provide insights into mechanisms of lignin biosynthesis in wood formation of Pinus massoniana. ''Int J Biol Macromol''. 2020 Nov 15; '''163''': 1926-1937
New Lineage of Microbial Predators Adds Complexity to Reconstructing the Evolutionary Origin of Animals. Description: Tikhonenkov, Denis V, et al. New Lineage of Microbial Predators Adds Complexity to Reconstructing the Evolutionary Origin of Animals. ''Curr Biol''. 2020 Nov 16; '''30''' (22):4500-4509.e5
Duodenal Metatranscriptomics to Define Human and Microbial Functional Alterations Associated with Severe Obesity: A Pilot Study. Description: Granata, Ilaria, et al. Duodenal Metatranscriptomics to Define Human and Microbial Functional Alterations Associated with Severe Obesity: A Pilot Study. ''Microorganisms''. 2020 Nov 17; '''8''' (11):
Hydrogen-Oxidizing Bacteria Are Abundant in Desert Soils and Strongly Stimulated by Hydration. Description: Jordaan, Karen, et al. Hydrogen-Oxidizing Bacteria Are Abundant in Desert Soils and Strongly Stimulated by Hydration. ''mSystems''. 2020 Nov 17; '''5''' (6):
Thermogenic hydrocarbon biodegradation by diverse depth-stratified microbial populations at a Scotian Basin cold seep. Description: Dong, Xiyang, et al. Thermogenic hydrocarbon biodegradation by diverse depth-stratified microbial populations at a Scotian Basin cold seep. ''Nat Commun''. 2020 Nov 17; '''11''' (1):5825
Structural Insights into New Bi(III) Coordination Polymers with Pyridine-2,3-Dicarboxylic Acid: Photoluminescence Properties and Anti-Helicobacter pylori Activity. Description: Kowalik, Mateusz, et al. Structural Insights into New Bi(III) Coordination Polymers with Pyridine-2,3-Dicarboxylic Acid: Photoluminescence Properties and Anti-Helicobacter pylori Activity. ''Int J Mol Sci''. 2020 Nov 18; '''21''' (22):
Genome Mining and Evaluation of the Biocontrol Potential of Pseudomonas fluorescens BRZ63, a New Endophyte of Oilseed Rape (Brassica napus L.) against Fungal Pathogens. Description: Chlebek, Daria, et al. Genome Mining and Evaluation of the Biocontrol Potential of Pseudomonas fluorescens BRZ63, a New Endophyte of Oilseed Rape (Brassica napus L.) against Fungal Pathogens. ''Int J Mol Sci''. 2020 Nov 19; '''21''' (22):
Localized effect of treated wastewater effluent on the resistome of an urban watershed. Description: Thornton, Christopher N, et al. Localized effect of treated wastewater effluent on the resistome of an urban watershed. ''Gigascience''. 2020 Nov 19; '''9''' (11):
New viral biogeochemical roles revealed through metagenomic analysis of Lake Baikal. Description: Coutinho, F H, et al. New viral biogeochemical roles revealed through metagenomic analysis of Lake Baikal. ''Microbiome''. 2020 Nov 19; '''8''' (1):163
Genomic analysis of Helicobacter himalayensis sp. nov. isolated from Marmota himalayana. Description: Hu, Shoukui, et al. Genomic analysis of Helicobacter himalayensis sp. nov. isolated from Marmota himalayana. ''BMC Genomics''. 2020 Nov 23; '''21''' (1):826
Longitudinal Changes in Skin Microbiome Associated with Change in Skin Status in Patients with Psoriasis. Description: Wang, Hailun, et al. Longitudinal Changes in Skin Microbiome Associated with Change in Skin Status in Patients with Psoriasis. ''Acta Derm Venereol''. 2020 Nov 24; '''100''' (18):adv00329
Exploring the abundance, metabolic potential and gene expression of subseafloor Chloroflexi in million-year-old oxic and anoxic abyssal clay. Description: Vuillemin, Aurele, et al. Exploring the abundance, metabolic potential and gene expression of subseafloor Chloroflexi in million-year-old oxic and anoxic abyssal clay. ''FEMS Microbiol Ecol''. 2020 Nov 25; '''96''' (12):
Multi-omics examination of Q fever fatigue syndrome identifies similarities with chronic fatigue syndrome. Description: Raijmakers, Ruud P H, et al. Multi-omics examination of Q fever fatigue syndrome identifies similarities with chronic fatigue syndrome. ''J Transl Med''. 2020 Nov 26; '''18''' (1):448
Predicting clinical resistance prevalence using sewage metagenomic data. Description: Karkman, Antti, et al. Predicting clinical resistance prevalence using sewage metagenomic data. ''Commun Biol''. 2020 Nov 26; '''3''' (1):711
Profiling Novel Alternative Splicing within Multiple Tissues Provides Useful Insights into Porcine Genome Annotation. Description: Feng, Wen, et al. Profiling Novel Alternative Splicing within Multiple Tissues Provides Useful Insights into Porcine Genome Annotation. ''Genes (Basel)''. 2020 Nov 26; '''11''' (12):
Synthesis of Platinum(II) Complexes with Some 1-Methylnitropyrazoles and In Vitro Research on Their Cytotoxic Activity. Description: Mastalarz, Henryk, et al. Synthesis of Platinum(II) Complexes with Some 1-Methylnitropyrazoles and In Vitro Research on Their Cytotoxic Activity. ''Pharmaceuticals (Basel)''. 2020 Nov 28; '''13''' (12):
Comparative Analysis of ROS Network Genes in Extremophile Eukaryotes. Description: Lyall, Rafe, et al. Comparative Analysis of ROS Network Genes in Extremophile Eukaryotes. ''Int J Mol Sci''. 2020 Nov 30; '''21''' (23):
A combination of urinary biomarker panel and PancRISK score for earlier detection of pancreatic cancer: A case-control study. Description: Debernardi, Silvana, et al. A combination of urinary biomarker panel and PancRISK score for earlier detection of pancreatic cancer: A case-control study. ''PLoS Med''. 2020 Dec; '''17''' (12):e1003489
Analysis of the vaginal microbiome of giant pandas using metagenomics sequencing. Description: Zhang, Lan, et al. Analysis of the vaginal microbiome of giant pandas using metagenomics sequencing. ''Microbiologyopen''. 2020 Dec; '''9''' (12):e1131
DNA methyltransferase 3B deficiency unveils a new pathological mechanism of pulmonary hypertension. Description: Yan, Yi, et al. DNA methyltransferase 3B deficiency unveils a new pathological mechanism of pulmonary hypertension. ''Sci Adv''. 2020 Dec; '''6''' (50):
Expansion of RiPP biosynthetic space through integration of pan-genomics and machine learning uncovers a novel class of lanthipeptides. Description: Kloosterman, Alexander M, et al. Expansion of RiPP biosynthetic space through integration of pan-genomics and machine learning uncovers a novel class of lanthipeptides. ''PLoS Biol''. 2020 Dec; '''18''' (12):e3001026
Identification of chironomid species as natural reservoirs of toxigenic Vibrio cholerae strains with pandemic potential. Description: Laviad-Shitrit, Sivan, et al. Identification of chironomid species as natural reservoirs of toxigenic Vibrio cholerae strains with pandemic potential. ''PLoS Negl Trop Dis''. 2020 Dec; '''14''' (12):e0008959
Landscapes of bacterial and metabolic signatures and their interaction in major depressive disorders. Description: Yang, Jian, et al. Landscapes of bacterial and metabolic signatures and their interaction in major depressive disorders. ''Sci Adv''. 2020 Dec; '''6''' (49):
Metagenomic analysis reveals linkages between cecal microbiota and feed efficiency in Xiayan chickens. Description: Du, Wenya, et al. Metagenomic analysis reveals linkages between cecal microbiota and feed efficiency in Xiayan chickens. ''Poult Sci''. 2020 Dec; '''99''' (12):7066-7075
Pervasive generation of non-canonical subgenomic RNAs by SARS-CoV-2. Description: Nomburg, Jason, et al. Pervasive generation of non-canonical subgenomic RNAs by SARS-CoV-2. ''Genome Med''. 2020 Dec 1; '''12''' (1):108
The saccharibacterium TM7x elicits differential responses across its host range. Description: Utter, Daniel R, et al. The saccharibacterium TM7x elicits differential responses across its host range. ''ISME J''. 2020 Dec; '''14''' (12):3054-3067
Enhanced Symbiotic Characteristics in Bacterial Genomes with the Disruption of rRNA Operon. Description: Ahn, Hyeonju, et al. Enhanced Symbiotic Characteristics in Bacterial Genomes with the Disruption of rRNA Operon. ''Biology (Basel)''. 2020 Dec 3; '''9''' (12):
High-throughput profiling of diapause regulated genes from Trichogramma dendrolimi (Hymenoptera: Trichogrammatidae). Description: Zhang, Xue, et al. High-throughput profiling of diapause regulated genes from Trichogramma dendrolimi (Hymenoptera: Trichogrammatidae). ''BMC Genomics''. 2020 Dec 4; '''21''' (1):864
Network and Evolutionary Analysis of Human Epigenetic Regulators to Unravel Disease Associations. Description: Ohsawa, Shinji, et al. Network and Evolutionary Analysis of Human Epigenetic Regulators to Unravel Disease Associations. ''Genes (Basel)''. 2020 Dec 4; '''11''' (12):
Metagenomic Analysis Reveals the Mechanism for the Observed Increase in Antibacterial Activity of Penicillin against Uncultured Bacteria Candidatus Liberibacter asiaticus Relative to Oxytetracycline in Planta. Description: Yang, Chuanyu, et al. Metagenomic Analysis Reveals the Mechanism for the Observed Increase in Antibacterial Activity of Penicillin against Uncultured Bacteria Candidatus Liberibacter asiaticus Relative to Oxytetracycline in Planta. ''Antibiotics (Basel)''. 2020 Dec 5; '''9''' (12):
Benchmarking Orthogroup Inference Accuracy: Revisiting Orthobench. Description: Emms, David M, et al. Benchmarking Orthogroup Inference Accuracy: Revisiting Orthobench. ''Genome Biol Evol''. 2020 Dec 6; '''12''' (12):2258-2266
Diversity of Sea Star-Associated Densoviruses and Transcribed Endogenous Viral Elements of Densovirus Origin. Description: Jackson, Elliot W, et al. Diversity of Sea Star-Associated Densoviruses and Transcribed Endogenous Viral Elements of Densovirus Origin. ''J Virol''. 2020 Dec 9; '''95''' (1):
Segregation distortion: high genetic load suggested by a Chinese shrimp family under high-intensity selection. Description: Fu, Qiang, et al. Segregation distortion: high genetic load suggested by a Chinese shrimp family under high-intensity selection. ''Sci Rep''. 2020 Dec 11; '''10''' (1):21820
A collection of bacterial isolates from the pig intestine reveals functional and taxonomic diversity. Description: Wylensek, David, et al. A collection of bacterial isolates from the pig intestine reveals functional and taxonomic diversity. ''Nat Commun''. 2020 Dec 15; '''11''' (1):6389
Darunavir/Cobicistat/Emtricitabine/Tenofovir Alafenamide in a Rapid-Initiation Model of Care for Human Immunodeficiency Virus Type 1 Infection: Primary Analysis of the DIAMOND Study. Description: Huhn, Gregory D, et al. Darunavir/Cobicistat/Emtricitabine/Tenofovir Alafenamide in a Rapid-Initiation Model of Care for Human Immunodeficiency Virus Type 1 Infection: Primary Analysis of the DIAMOND Study. ''Clin Infect Dis''. 2020 Dec 15; '''71''' (12):3110-3117
Genomes of the "Candidatus Actinomarinales" Order: Highly Streamlined Marine Epipelagic Actinobacteria. Description: Lopez-Perez, Mario, et al. Genomes of the "Candidatus Actinomarinales" Order: Highly Streamlined Marine Epipelagic Actinobacteria. ''mSystems''. 2020 Dec 15; '''5''' (6):
Comparative genomics of Klebsiella michiganensis BD177 and related members of Klebsiella sp. reveal the symbiotic relationship with Bactrocera dorsalis. Description: Cai, Zhaohui, et al. Comparative genomics of Klebsiella michiganensis BD177 and related members of Klebsiella sp. reveal the symbiotic relationship with Bactrocera dorsalis. ''BMC Genet''. 2020 Dec 18; '''21''' (Suppl 2):138
A structure of substrate-bound Synaptojanin1 provides new insights in its mechanism and the effect of disease mutations. Description: Paesmans, Jone, et al. A structure of substrate-bound Synaptojanin1 provides new insights in its mechanism and the effect of disease mutations. ''Elife''. 2020 Dec 22; '''9''':
Metabolic Reconstruction Elucidates the Lifestyle of the Last Diplomonadida Common Ancestor. Description: Jimenez-Gonzalez, Alejandro, et al. Metabolic Reconstruction Elucidates the Lifestyle of the Last Diplomonadida Common Ancestor. ''mSystems''. 2020 Dec 22; '''5''' (6):
Comparative Analysis of Carbohydrate Active Enzymes in the Flammulina velutipes var. lupinicola Genome. Description: Yu, Hye-Won, et al. Comparative Analysis of Carbohydrate Active Enzymes in the Flammulina velutipes var. lupinicola Genome. ''Microorganisms''. 2020 Dec 23; '''9''' (1):
Genome and time-of-day transcriptome of Wolffia australiana link morphological minimization with gene loss and less growth control. Description: Michael, Todd P, et al. Genome and time-of-day transcriptome of Wolffia australiana link morphological minimization with gene loss and less growth control. ''Genome Res''. 2020 Dec 23;
The Developmental Transcriptome of Bagworm, Metisa plana (Lepidoptera: Psychidae) and Insights into Chitin Biosynthesis Genes. Description: Rahmat, Nur Lina, et al. The Developmental Transcriptome of Bagworm, Metisa plana (Lepidoptera: Psychidae) and Insights into Chitin Biosynthesis Genes. ''Genes (Basel)''. 2020 Dec 23; '''12''' (1):
DeepNOG: Fast and accurate protein orthologous group assignment. Description: Feldbauer, Roman, et al. DeepNOG: Fast and accurate protein orthologous group assignment. ''Bioinformatics''. 2020 Dec 26;
Effectors with Different Gears: Divergence of Ustilago maydis Effector Genes Is Associated with Their Temporal Expression Pattern during Plant Infection. Description: Depotter, Jasper R L, et al. Effectors with Different Gears: Divergence of Ustilago maydis Effector Genes Is Associated with Their Temporal Expression Pattern during Plant Infection. ''J Fungi (Basel)''. 2020 Dec 29; '''7''' (1):
Metage2Metabo, microbiota-scale metabolic complementarity for the identification of key species. Description: Belcour, Arnaud, et al. Metage2Metabo, microbiota-scale metabolic complementarity for the identification of key species. ''Elife''. 2020 Dec 29; '''9''':
Comparative transcriptome analysis of eyestalk from the white shrimp Litopenaeus vannamei after the injection of dopamine. Description: Wei, Cun, et al. Comparative transcriptome analysis of eyestalk from the white shrimp Litopenaeus vannamei after the injection of dopamine. ''Gene''. 2020 Dec 30; '''763''': 145115
A combination of fecal calprotectin and human beta-defensin 2 facilitates diagnosis and monitoring of inflammatory bowel disease. Description: Gacesa, R, et al. A combination of fecal calprotectin and human beta-defensin 2 facilitates diagnosis and monitoring of inflammatory bowel disease. ''Gut Microbes''. 2021 Jan-Dec; '''13''' (1):1943288
A Combined Metagenomics and Metatranscriptomics Approach to Unravel Costa Rican Cocoa Box Fermentation Processes Reveals Yet Unreported Microbial Species and Functionalities. Description: Verce, Marko, et al. A Combined Metagenomics and Metatranscriptomics Approach to Unravel Costa Rican Cocoa Box Fermentation Processes Reveals Yet Unreported Microbial Species and Functionalities. ''Front Microbiol''. 2021; '''12''': 641185
A Comparative Analysis on the Structure and Function of the Panax notoginseng Rhizosphere Microbiome. Description: Kui, Ling, et al. A Comparative Analysis on the Structure and Function of the Panax notoginseng Rhizosphere Microbiome. ''Front Microbiol''. 2021; '''12''': 673512
A Comprehensive Analysis of the Colonic Flora Diversity, Short Chain Fatty Acid Metabolism, Transcripts, and Biochemical Indexes in Heat-Stressed Pigs. Description: Hu, Canying, et al. A Comprehensive Analysis of the Colonic Flora Diversity, Short Chain Fatty Acid Metabolism, Transcripts, and Biochemical Indexes in Heat-Stressed Pigs. ''Front Immunol''. 2021; '''12''': 717723
Active Microbiome Structure and Functional Analyses of Freshwater Benthic Biofilm Samples Influenced by RNA Extraction Methods. Description: Yao, Yuan, et al. Active Microbiome Structure and Functional Analyses of Freshwater Benthic Biofilm Samples Influenced by RNA Extraction Methods. ''Front Microbiol''. 2021; '''12''': 588025
Adaptation of Gut Microbiome to Transgenic Pigs Secreting beta-Glucanase, Xylanase, and Phytase. Description: Mo, Jianxin, et al. Adaptation of Gut Microbiome to Transgenic Pigs Secreting beta-Glucanase, Xylanase, and Phytase. ''Front Genet''. 2021; '''12''': 631071
A genomic perspective on the potential of termite-associated Cellulosimicrobium cellulans MP1 as producer of plant biomass-acting enzymes and exopolysaccharides. Description: Vu, Nguyen Thi-Hanh, et al. A genomic perspective on the potential of termite-associated Cellulosimicrobium cellulans MP1 as producer of plant biomass-acting enzymes and exopolysaccharides. ''PeerJ''. 2021; '''9''': e11839
Ancient viral integrations in marsupials: a potential antiviral defence. Description: Harding, Emma F, et al. Ancient viral integrations in marsupials: a potential antiviral defence. ''Virus Evol''. 2021; '''7''' (2):veab076
An integrative network-based approach for drug target indication expansion. Description: Han, Yingnan, et al. An integrative network-based approach for drug target indication expansion. ''PLoS One''. 2021; '''16''' (7):e0253614
Associations of the gut microbiome with hepatic adiposity in the Multiethnic Cohort Adiposity Phenotype Study. Description: Hullar, Meredith A J, et al. Associations of the gut microbiome with hepatic adiposity in the Multiethnic Cohort Adiposity Phenotype Study. ''Gut Microbes''. 2021 Jan-Dec; '''13''' (1):1965463
Astrovirus Outbreak in an Animal Shelter Associated With Feline Vomiting. Description: Li, Yanpeng, et al. Astrovirus Outbreak in an Animal Shelter Associated With Feline Vomiting. ''Front Vet Sci''. 2021; '''8''': 628082
A unified catalog of 204,938 reference genomes from the human gut microbiome. Description: Almeida, Alexandre, et al. A unified catalog of 204,938 reference genomes from the human gut microbiome. ''Nat Biotechnol''. 2021 Jan; '''39''' (1):105-114
Bacterial Transformation of Aromatic Monomers in Softwood Black Liquor. Description: Navas, Laura E, et al. Bacterial Transformation of Aromatic Monomers in Softwood Black Liquor. ''Front Microbiol''. 2021; '''12''': 735000
Bagasse minority pathway expression: Real time study of GH2 beta-mannosidases from bacteroidetes. Description: Leonel, Tatiane Fernanda, et al. Bagasse minority pathway expression: Real time study of GH2 beta-mannosidases from bacteroidetes. ''PLoS One''. 2021; '''16''' (3):e0247822
Behavioral and molecular response of the insect parasitic nematode Steinernema carpocapsae to cues emitted by a host, the red palm weevil, Rhynchophorus ferrugineus. Description: Santhi, Velayudhan Satheeja, et al. Behavioral and molecular response of the insect parasitic nematode Steinernema carpocapsae to cues emitted by a host, the red palm weevil, Rhynchophorus ferrugineus. ''Mol Biochem Parasitol''. 2021 Jan; '''241''': 111345
Blood Meals With Active and Heat-Inactivated Serum Modifies the Gene Expression and Microbiome of Aedes albopictus. Description: Calle-Tobon, Arley, et al. Blood Meals With Active and Heat-Inactivated Serum Modifies the Gene Expression and Microbiome of Aedes albopictus. ''Front Microbiol''. 2021; '''12''': 724345
Bridging the membrane lipid divide: bacteria of the FCB group superphylum have the potential to synthesize archaeal ether lipids. Description: Villanueva, Laura, et al. Bridging the membrane lipid divide: bacteria of the FCB group superphylum have the potential to synthesize archaeal ether lipids. ''ISME J''. 2021 Jan; '''15''' (1):168-182
Bruceae Fructus Oil Inhibits Triple-Negative Breast Cancer by Restraining Autophagy: Dependence on the Gut Microbiota-Mediated Amino Acid Regulation. Description: Su, Jiyan, et al. Bruceae Fructus Oil Inhibits Triple-Negative Breast Cancer by Restraining Autophagy: Dependence on the Gut Microbiota-Mediated Amino Acid Regulation. ''Front Pharmacol''. 2021; '''12''': 727082
Characterization of fructooligosaccharide metabolism and fructooligosaccharide-degrading enzymes in human commensal butyrate producers. Description: Tanno, Hiroki, et al. Characterization of fructooligosaccharide metabolism and fructooligosaccharide-degrading enzymes in human commensal butyrate producers. ''Gut Microbes''. 2021 Jan-Dec; '''13''' (1):1-20
Characterization of Spacesuit Associated Microbial Communities and Their Implications for NASA Missions. Description: Danko, David, et al. Characterization of Spacesuit Associated Microbial Communities and Their Implications for NASA Missions. ''Front Microbiol''. 2021; '''12''': 608478
Characterization of the gut DNA and RNA Viromes in a Cohort of Chinese Residents and Visiting Pakistanis. Description: Yan, Qiulong, et al. Characterization of the gut DNA and RNA Viromes in a Cohort of Chinese Residents and Visiting Pakistanis. ''Virus Evol''. 2021 Jan; '''7''' (1):veab022
Chromosome-Level Genome Assembly and Annotation of the Fiber Flax (Linum usitatissimum) Genome. Description: Sa, Rula, et al. Chromosome-Level Genome Assembly and Annotation of the Fiber Flax (Linum usitatissimum) Genome. ''Front Genet''. 2021; '''12''': 735690
Chromosome-scale assembly of the yellow mealworm genome. Description: Eleftheriou, Evangelia, et al. Chromosome-scale assembly of the yellow mealworm genome. ''Open Res Eur''. 2021; '''1''': 94
Coastal Bacterial Community Response to Glacier Melting in the Western Antarctic Peninsula. Description: Alcaman-Arias, Maria Estrella, et al. Coastal Bacterial Community Response to Glacier Melting in the Western Antarctic Peninsula. ''Microorganisms''. 2021 Jan 1; '''9''' (1):
Comparative Genomic Analysis Reveals Genetic Variation and Adaptive Evolution in the Pathogenicity-Related Genes of Phytophthora capsici. Description: Lee, Joung-Ho, et al. Comparative Genomic Analysis Reveals Genetic Variation and Adaptive Evolution in the Pathogenicity-Related Genes of Phytophthora capsici. ''Front Microbiol''. 2021; '''12''': 694136
Comparative Genomic Insights Into the Taxonomic Classification, Diversity, and Secondary Metabolic Potentials of Kitasatospora, a Genus Closely Related to Streptomyces. Description: Li, Yisong, et al. Comparative Genomic Insights Into the Taxonomic Classification, Diversity, and Secondary Metabolic Potentials of Kitasatospora, a Genus Closely Related to Streptomyces. ''Front Microbiol''. 2021; '''12''': 683814
Comparative hologenomics of two Ixodes scapularis tick populations in New Jersey. Description: Price, Dana C, et al. Comparative hologenomics of two Ixodes scapularis tick populations in New Jersey. ''PeerJ''. 2021; '''9''': e12313
Comparative Metagenomics Reveals Microbial Signatures of Sugarcane Phyllosphere in Organic Management. Description: Khoiri, Ahmad Nuruddin, et al. Comparative Metagenomics Reveals Microbial Signatures of Sugarcane Phyllosphere in Organic Management. ''Front Microbiol''. 2021; '''12''': 623799
Complete Genome Sequence of Weissella confusa LM1 and Comparative Genomic Analysis. Description: Yuan, Shenglei, et al. Complete Genome Sequence of Weissella confusa LM1 and Comparative Genomic Analysis. ''Front Microbiol''. 2021; '''12''': 749218
Contamination in Reference Sequence Databases: Time for Divide-and-Rule Tactics. Description: Lupo, Valerian, et al. Contamination in Reference Sequence Databases: Time for Divide-and-Rule Tactics. ''Front Microbiol''. 2021; '''12''': 755101
Covariance of Phytoplankton, Bacteria, and Zooplankton Communities Within Microcystis Blooms in San Francisco Estuary. Description: Lehman, Peggy W, et al. Covariance of Phytoplankton, Bacteria, and Zooplankton Communities Within Microcystis Blooms in San Francisco Estuary. ''Front Microbiol''. 2021; '''12''': 632264
Cross-Sectional Study on the Gut Microbiome of Parkinson's Disease Patients in Central China. Description: Mao, Liangwei, et al. Cross-Sectional Study on the Gut Microbiome of Parkinson's Disease Patients in Central China. ''Front Microbiol''. 2021; '''12''': 728479
Cross-Sectional Variations in Structure and Function of Coral Reef Microbiome With Local Anthropogenic Impacts on the Kenyan Coast of the Indian Ocean. Description: Wambua, Sammy, et al. Cross-Sectional Variations in Structure and Function of Coral Reef Microbiome With Local Anthropogenic Impacts on the Kenyan Coast of the Indian Ocean. ''Front Microbiol''. 2021; '''12''': 673128
Deciphering Gut Microbiota Dysbiosis and Corresponding Genetic and Metabolic Dysregulation in Psoriasis Patients Using Metagenomics Sequencing. Description: Xiao, Shiju, et al. Deciphering Gut Microbiota Dysbiosis and Corresponding Genetic and Metabolic Dysregulation in Psoriasis Patients Using Metagenomics Sequencing. ''Front Cell Infect Microbiol''. 2021; '''11''': 605825
Deep (Meta)genomics and (Meta)transcriptome Analyses of Fungal and Bacteria Consortia From Aircraft Tanks and Kerosene Identify Key Genes in Fuel and Tank Corrosion. Description: Krohn, Ines, et al. Deep (Meta)genomics and (Meta)transcriptome Analyses of Fungal and Bacteria Consortia From Aircraft Tanks and Kerosene Identify Key Genes in Fuel and Tank Corrosion. ''Front Microbiol''. 2021; '''12''': 722259
Deep sequencing applied to the analysis of viromes in patients with beta-thalassemia. Description: Valenca, Ian Nunes, et al. Deep sequencing applied to the analysis of viromes in patients with beta-thalassemia. ''Rev Inst Med Trop Sao Paulo''. 2021; '''63''': e40
Defining the 'HoneySweet' insertion event utilizing NextGen sequencing and a de novo genome assembly of plum (Prunus domestica). Description: Callahan, Ann M, et al. Defining the 'HoneySweet' insertion event utilizing NextGen sequencing and a de novo genome assembly of plum (Prunus domestica). ''Hortic Res''. 2021 Jan 1; '''8''' (1):8
Development of Genome-Wide Functional Markers Using Draft Genome Assembly of Guava (Psidium guajava L.) cv. Allahabad Safeda to Expedite Molecular Breeding. Description: Thakur, Sujata, et al. Development of Genome-Wide Functional Markers Using Draft Genome Assembly of Guava (Psidium guajava L.) cv. Allahabad Safeda to Expedite Molecular Breeding. ''Front Plant Sci''. 2021; '''12''': 708332
Diel-Regulated Transcriptional Cascades of Microbial Eukaryotes in the North Pacific Subtropical Gyre. Description: Groussman, Ryan D, et al. Diel-Regulated Transcriptional Cascades of Microbial Eukaryotes in the North Pacific Subtropical Gyre. ''Front Microbiol''. 2021; '''12''': 682651
Discovery and surveillance of viruses from salmon in British Columbia using viral immune-response biomarkers, metatranscriptomics, and high-throughput RT-PCR. Description: Mordecai, Gideon J, et al. Discovery and surveillance of viruses from salmon in British Columbia using viral immune-response biomarkers, metatranscriptomics, and high-throughput RT-PCR. ''Virus Evol''. 2021 Jan; '''7''' (1):veaa069
Discovery of Novel Viruses Associated With the Invasive Cane Toad (Rhinella marina) in Its Native and Introduced Ranges. Description: Russo, Alice G, et al. Discovery of Novel Viruses Associated With the Invasive Cane Toad (Rhinella marina) in Its Native and Introduced Ranges. ''Front Microbiol''. 2021; '''12''': 733631
Diversity analysis of thermophilic hydrogenogenic carboxydotrophs by carbon monoxide dehydrogenase amplicon sequencing using new primers. Description: Omae, Kimiho, et al. Diversity analysis of thermophilic hydrogenogenic carboxydotrophs by carbon monoxide dehydrogenase amplicon sequencing using new primers. ''Extremophiles''. 2021 Jan; '''25''' (1):61-76
Diversity and function of culturable actinobacteria in the root-associated of Salvia miltiorrhiza Bunge. Description: Wu, Yu-Rui, et al. Diversity and function of culturable actinobacteria in the root-associated of Salvia miltiorrhiza Bunge. ''PeerJ''. 2021; '''9''': e11749
Draft genome sequence of Marssonina coronaria, causal agent of apple blotch, and comparisons with the Marssonina brunnea and Marssonina rosae genomes. Description: Cheng, Qiang, et al. Draft genome sequence of Marssonina coronaria, causal agent of apple blotch, and comparisons with the Marssonina brunnea and Marssonina rosae genomes. ''PLoS One''. 2021; '''16''' (2):e0246666
Draft genomes of Perkinsus olseni and Perkinsus chesapeaki reveal polyploidy and regional differences in heterozygosity. Description: Bogema, Daniel R, et al. Draft genomes of Perkinsus olseni and Perkinsus chesapeaki reveal polyploidy and regional differences in heterozygosity. ''Genomics''. 2021 Jan; '''113''' (1 Pt 2):677-688
Drought Stress Triggers Shifts in the Root Microbial Community and Alters Functional Categories in the Microbial Gene Pool. Description: Xie, Jianbo, et al. Drought Stress Triggers Shifts in the Root Microbial Community and Alters Functional Categories in the Microbial Gene Pool. ''Front Microbiol''. 2021; '''12''': 744897
Effects of Rotations With Legume on Soil Functional Microbial Communities Involved in Phosphorus Transformation. Description: Yu, Hui, et al. Effects of Rotations With Legume on Soil Functional Microbial Communities Involved in Phosphorus Transformation. ''Front Microbiol''. 2021; '''12''': 661100
Enhanced Recovery of Microbial Genes and Genomes From a Marine Water Column Using Long-Read Metagenomics. Description: Haro-Moreno, Jose M, et al. Enhanced Recovery of Microbial Genes and Genomes From a Marine Water Column Using Long-Read Metagenomics. ''Front Microbiol''. 2021; '''12''': 708782
Environmental Factors Influencing Phyllosphere Bacterial Communities in Giant Pandas' Staple Food Bamboos. Description: Long, Juejie, et al. Environmental Factors Influencing Phyllosphere Bacterial Communities in Giant Pandas' Staple Food Bamboos. ''Front Microbiol''. 2021; '''12''': 748141
Evaluation of the Long-Term Cost-Effectiveness of the Dexcom G6 Continuous Glucose Monitor versus Self-Monitoring of Blood Glucose in People with Type 1 Diabetes in Canada. Description: Roze, Stephane, et al. Evaluation of the Long-Term Cost-Effectiveness of the Dexcom G6 Continuous Glucose Monitor versus Self-Monitoring of Blood Glucose in People with Type 1 Diabetes in Canada. ''Clinicoecon Outcomes Res''. 2021; '''13''': 717-725
Evaluation of the Microba Community Profiler for Taxonomic Profiling of Metagenomic Datasets From the Human Gut Microbiome. Description: Parks, Donovan H, et al. Evaluation of the Microba Community Profiler for Taxonomic Profiling of Metagenomic Datasets From the Human Gut Microbiome. ''Front Microbiol''. 2021; '''12''': 643682
Factors Associated With the Microbiome in Moderate-Late Preterm Babies: A Cohort Study From the DIAMOND Randomized Controlled Trial. Description: Chong, Clara Yieh Lin, et al. Factors Associated With the Microbiome in Moderate-Late Preterm Babies: A Cohort Study From the DIAMOND Randomized Controlled Trial. ''Front Cell Infect Microbiol''. 2021; '''11''': 595323
FiberGrowth Pipeline: A Framework Toward Predicting Fiber-Specific Growth From Human Gut Bacteroidetes Genomes. Description: Colnet, Benedicte, et al. FiberGrowth Pipeline: A Framework Toward Predicting Fiber-Specific Growth From Human Gut Bacteroidetes Genomes. ''Front Microbiol''. 2021; '''12''': 632567
Fine Mapping of the "black" Peel Color in Pomegranate (Punica granatum L.) Strongly Suggests That a Mutation in the Anthocyanidin Reductase (ANR) Gene Is Responsible for the Trait. Description: Trainin, Taly, et al. Fine Mapping of the "black" Peel Color in Pomegranate (Punica granatum L.) Strongly Suggests That a Mutation in the Anthocyanidin Reductase (ANR) Gene Is Responsible for the Trait. ''Front Plant Sci''. 2021; '''12''': 642019
Freshwater sponge hosts and their green algae symbionts: a tractable model to understand intracellular symbiosis. Description: Hall, Chelsea, et al. Freshwater sponge hosts and their green algae symbionts: a tractable model to understand intracellular symbiosis. ''PeerJ''. 2021; '''9''': e10654
Full-length transcriptome analysis of Spodoptera frugiperda larval brain reveals detoxification genes. Description: Yang, Lei, et al. Full-length transcriptome analysis of Spodoptera frugiperda larval brain reveals detoxification genes. ''PeerJ''. 2021; '''9''': e12069
Functional capacities of microbial communities to carry out large scale geochemical processes are maintained during ex situ anaerobic incubation. Description: Wilson, R M, et al. Functional capacities of microbial communities to carry out large scale geochemical processes are maintained during ex situ anaerobic incubation. ''PLoS One''. 2021; '''16''' (2):e0245857
Functional metagenomic landscape of polluted river reveals potential genes involved in degradation of xenobiotic pollutants. Description: Yadav, Rakeshkumar, et al. Functional metagenomic landscape of polluted river reveals potential genes involved in degradation of xenobiotic pollutants. ''Environ Res''. 2021 Jan; '''192''': 110332
Gene expression during bacterivorous growth of a widespread marine heterotrophic flagellate. Description: Massana, Ramon, et al. Gene expression during bacterivorous growth of a widespread marine heterotrophic flagellate. ''ISME J''. 2021 Jan; '''15''' (1):154-167
Gene Expression Profile of the Human Colorectal Carcinoma LoVo Cells Treated With Sporamin and Thapsigargin. Description: Yang, Chun, et al. Gene Expression Profile of the Human Colorectal Carcinoma LoVo Cells Treated With Sporamin and Thapsigargin. ''Front Oncol''. 2021; '''11''': 621462
Genetic Elucidation of Quorum Sensing and Cobamide Biosynthesis in Divergent Bacterial-Fungal Associations Across the Soil-Mangrove Root Interface. Description: Zhou, Zhengyuan, et al. Genetic Elucidation of Quorum Sensing and Cobamide Biosynthesis in Divergent Bacterial-Fungal Associations Across the Soil-Mangrove Root Interface. ''Front Microbiol''. 2021; '''12''': 698385
Gene variations in autism spectrum disorder are associated with alteration of gut microbiota, metabolites and cytokines. Description: Liu, Zhi, et al. Gene variations in autism spectrum disorder are associated with alteration of gut microbiota, metabolites and cytokines. ''Gut Microbes''. 2021 Jan-Dec; '''13''' (1):1-16
Genome analysis reveals probiotic propensities of Paenibacillus polymyxa HK4. Description: Soni, Riteshri, et al. Genome analysis reveals probiotic propensities of Paenibacillus polymyxa HK4. ''Genomics''. 2021 Jan; '''113''' (1 Pt 2):861-873
Genome-wide survey and characterization of transcription factors in the silk gland of the silkworm, Bombyx mori. Description: Ma, Yan, et al. Genome-wide survey and characterization of transcription factors in the silk gland of the silkworm, Bombyx mori. ''PLoS One''. 2021; '''16''' (11):e0259870
Genome-Wide Transcription Factor DNA Binding Sites and Gene Regulatory Networks in Clostridium thermocellum. Description: Hebdon, Skyler D, et al. Genome-Wide Transcription Factor DNA Binding Sites and Gene Regulatory Networks in Clostridium thermocellum. ''Front Microbiol''. 2021; '''12''': 695517
Genomic Analysis of Sarcomyxa edulis Reveals the Basis of Its Medicinal Properties and Evolutionary Relationships. Description: Tian, Fenghua, et al. Genomic Analysis of Sarcomyxa edulis Reveals the Basis of Its Medicinal Properties and Evolutionary Relationships. ''Front Microbiol''. 2021; '''12''': 652324
Genomic and transcriptomic resources for candidate gene discovery in the Ranunculids. Description: Arias, Tatiana, et al. Genomic and transcriptomic resources for candidate gene discovery in the Ranunculids. ''Appl Plant Sci''. 2021 Jan; '''9''' (1):e11407
Genomic comparison of non-photosynthetic plants from the family Balanophoraceae with their photosynthetic relatives. Description: Schelkunov, Mikhail I, et al. Genomic comparison of non-photosynthetic plants from the family Balanophoraceae with their photosynthetic relatives. ''PeerJ''. 2021; '''9''': e12106
Genomic Insights Into the Pathogenicity of a Novel Biofilm-Forming Enterococcus sp. Bacteria (Enterococcus lacertideformus) Identified in Reptiles. Description: Agius, Jessica Esther, et al. Genomic Insights Into the Pathogenicity of a Novel Biofilm-Forming Enterococcus sp. Bacteria (Enterococcus lacertideformus) Identified in Reptiles. ''Front Microbiol''. 2021; '''12''': 635208
Glycan Biosynthesis Ability of Gut Microbiota Increased in Primary Hypertension Patients Taking Antihypertension Medications and Potentially Promoted by Macrophage-Adenosine Monophosphate-Activated Protein Kinase. Description: Zheng, Shuai, et al. Glycan Biosynthesis Ability of Gut Microbiota Increased in Primary Hypertension Patients Taking Antihypertension Medications and Potentially Promoted by Macrophage-Adenosine Monophosphate-Activated Protein Kinase. ''Front Microbiol''. 2021; '''12''': 719599
High Potential for Biomass-Degrading Enzymes Revealed by Hot Spring Metagenomics. Description: Reichart, Nicholas J, et al. High Potential for Biomass-Degrading Enzymes Revealed by Hot Spring Metagenomics. ''Front Microbiol''. 2021; '''12''': 668238
Host-Parasite Interaction of Atlantic salmon (Salmo salar) and the Ectoparasite Neoparamoeba perurans in Amoebic Gill Disease. Description: Botwright, Natasha A, et al. Host-Parasite Interaction of Atlantic salmon (Salmo salar) and the Ectoparasite Neoparamoeba perurans in Amoebic Gill Disease. ''Front Immunol''. 2021; '''12''': 672700
iBLAST: Incremental BLAST of new sequences via automated e-value correction. Description: Dash, Sajal, et al. iBLAST: Incremental BLAST of new sequences via automated e-value correction. ''PLoS One''. 2021; '''16''' (4):e0249410
Identification and Characterization of a Novel Aminoglycoside 3''-Nucleotidyltransferase, ANT(3'')-IId, From Acinetobacter lwoffii. Description: Liang, Jialei, et al. Identification and Characterization of a Novel Aminoglycoside 3''-Nucleotidyltransferase, ANT(3'')-IId, From Acinetobacter lwoffii. ''Front Microbiol''. 2021; '''12''': 728216
Identification of Three Clf-Sdr Subfamily Proteins in Staphylococcus warneri, and Comparative Genomics Analysis of a Locus Encoding CWA Proteins in Staphylococcus Species. Description: Sun, Zhewei, et al. Identification of Three Clf-Sdr Subfamily Proteins in Staphylococcus warneri, and Comparative Genomics Analysis of a Locus Encoding CWA Proteins in Staphylococcus Species. ''Front Microbiol''. 2021; '''12''': 691087
Identification of Tick-Borne Pathogens and Genotyping of Coxiella burnetii in Rhipicephalus microplus in Yunnan Province, China. Description: Jiao, Jun, et al. Identification of Tick-Borne Pathogens and Genotyping of Coxiella burnetii in Rhipicephalus microplus in Yunnan Province, China. ''Front Microbiol''. 2021; '''12''': 736484
Insights on the Evolutionary Genomics of the Blautia Genus: Potential New Species and Genetic Content Among Lineages. Description: Maturana, Jose Luis, et al. Insights on the Evolutionary Genomics of the Blautia Genus: Potential New Species and Genetic Content Among Lineages. ''Front Microbiol''. 2021; '''12''': 660920
Interannual dynamics, diversity and evolution of the virome in Sclerotinia sclerotiorum from a single crop field. Description: Jia, Jichun, et al. Interannual dynamics, diversity and evolution of the virome in Sclerotinia sclerotiorum from a single crop field. ''Virus Evol''. 2021 Jan; '''7''' (1):veab032
Interpopulation differences of retroduplication variations (RDVs) in rice retrogenes and their phenotypic correlations. Description: Zeng, Haiyue, et al. Interpopulation differences of retroduplication variations (RDVs) in rice retrogenes and their phenotypic correlations. ''Comput Struct Biotechnol J''. 2021; '''19''': 600-611
Joint transcriptomic and metabolomic analysis reveals the mechanism of low-temperature tolerance in Hosta ventricosa. Description: Zhuang, QianQian, et al. Joint transcriptomic and metabolomic analysis reveals the mechanism of low-temperature tolerance in Hosta ventricosa. ''PLoS One''. 2021; '''16''' (11):e0259455
Lipid accumulation of Chlorella sp. TLD6B from the Taklimakan Desert under salt stress. Description: Li, Hong, et al. Lipid accumulation of Chlorella sp. TLD6B from the Taklimakan Desert under salt stress. ''PeerJ''. 2021; '''9''': e11525
Liver Cancer: Therapeutic Challenges and the Importance of Experimental Models. Description: Galicia-Moreno, Marina, et al. Liver Cancer: Therapeutic Challenges and the Importance of Experimental Models. ''Can J Gastroenterol Hepatol''. 2021; '''2021''': 8837811
Metagenomic Analysis Identifies Sex-Related Cecal Microbial Gene Functions and Bacterial Taxa in the Quail. Description: Ma, Jing-E, et al. Metagenomic Analysis Identifies Sex-Related Cecal Microbial Gene Functions and Bacterial Taxa in the Quail. ''Front Vet Sci''. 2021; '''8''': 693755
Metagenomic Analysis of Biocide-Treated Neotropical Oil Reservoir Water Unveils Microdiversity of Thermophile Tepidiphilus. Description: Bedoya, Katherine, et al. Metagenomic Analysis of Biocide-Treated Neotropical Oil Reservoir Water Unveils Microdiversity of Thermophile Tepidiphilus. ''Front Microbiol''. 2021; '''12''': 741555
Metagenomic Analysis of Dental Plaque on Pit and Fissure Sites With and Without Caries Among Adolescents. Description: Pang, Liangyue, et al. Metagenomic Analysis of Dental Plaque on Pit and Fissure Sites With and Without Caries Among Adolescents. ''Front Cell Infect Microbiol''. 2021; '''11''': 740981
Metagenomic Analysis of Saliva Reveals Disease-Associated Microbiotas in Patients With Periodontitis and Crohn's Disease-Associated Periodontitis. Description: Sun, Boyang, et al. Metagenomic Analysis of Saliva Reveals Disease-Associated Microbiotas in Patients With Periodontitis and Crohn's Disease-Associated Periodontitis. ''Front Cell Infect Microbiol''. 2021; '''11''': 719411
Metagenomic Analysis Reveals Microbial Community Structure and Metabolic Potential for Nitrogen Acquisition in the Oligotrophic Surface Water of the Indian Ocean. Description: Wang, Yayu, et al. Metagenomic Analysis Reveals Microbial Community Structure and Metabolic Potential for Nitrogen Acquisition in the Oligotrophic Surface Water of the Indian Ocean. ''Front Microbiol''. 2021; '''12''': 518865
Metagenomic assessment of the global diversity and distribution of bacteria and fungi. Description: Bahram, Mohammad, et al. Metagenomic assessment of the global diversity and distribution of bacteria and fungi. ''Environ Microbiol''. 2021 Jan; '''23''' (1):316-326
Metagenomic Insights Into the Microbial Iron Cycle of Subseafloor Habitats. Description: Garber, Arkadiy I, et al. Metagenomic Insights Into the Microbial Iron Cycle of Subseafloor Habitats. ''Front Microbiol''. 2021; '''12''': 667944
Metatranscriptome Library Preparation Influences Analyses of Viral Community Activity During a Brown Tide Bloom. Description: Gann, Eric R, et al. Metatranscriptome Library Preparation Influences Analyses of Viral Community Activity During a Brown Tide Bloom. ''Front Microbiol''. 2021; '''12''': 664189
Metformin Strongly Affects Gut Microbiome Composition in High-Fat Diet-Induced Type 2 Diabetes Mouse Model of Both Sexes. Description: Silamikele, Laila, et al. Metformin Strongly Affects Gut Microbiome Composition in High-Fat Diet-Induced Type 2 Diabetes Mouse Model of Both Sexes. ''Front Endocrinol (Lausanne)''. 2021; '''12''': 626359
Microbial characteristics across different tongue coating types in a healthy population. Description: Chen, Hairong, et al. Microbial characteristics across different tongue coating types in a healthy population. ''J Oral Microbiol''. 2021; '''13''' (1):1946316
Multinuclei Occurred Under Cryopreservation and Enhanced the Pathogenicity of Melampsora larici-populina. Description: Zheng, Wei, et al. Multinuclei Occurred Under Cryopreservation and Enhanced the Pathogenicity of Melampsora larici-populina. ''Front Microbiol''. 2021; '''12''': 650902
New Arsenite Oxidase Gene (aioA) PCR Primers for Assessing Arsenite-Oxidizer Diversity in the Environment Using High-Throughput Sequencing. Description: Hu, Min, et al. New Arsenite Oxidase Gene (aioA) PCR Primers for Assessing Arsenite-Oxidizer Diversity in the Environment Using High-Throughput Sequencing. ''Front Microbiol''. 2021; '''12''': 691913
NGScloud2: optimized bioinformatic analysis using Amazon Web Services. Description: Mora-Marquez, Fernando, et al. NGScloud2: optimized bioinformatic analysis using Amazon Web Services. ''PeerJ''. 2021; '''9''': e11237
Performance of Multiple Metagenomics Pipelines in Understanding Microbial Diversity of a Low-Biomass Spacecraft Assembly Facility. Description: Wood, Jason M, et al. Performance of Multiple Metagenomics Pipelines in Understanding Microbial Diversity of a Low-Biomass Spacecraft Assembly Facility. ''Front Microbiol''. 2021; '''12''': 685254
Phage-Mediated Explosive Cell Lysis Induces the Formation of a Different Type of O-IMV in Shewanella vesiculosa M7(T). Description: Baeza, Nicolas, et al. Phage-Mediated Explosive Cell Lysis Induces the Formation of a Different Type of O-IMV in Shewanella vesiculosa M7(T). ''Front Microbiol''. 2021; '''12''': 713669
Plasma proteomics of green turtles (Chelonia mydas) reveals pathway shifts and potential biomarker candidates associated with health and disease. Description: Marancik, David P, et al. Plasma proteomics of green turtles (Chelonia mydas) reveals pathway shifts and potential biomarker candidates associated with health and disease. ''Conserv Physiol''. 2021; '''9''' (1):coab018
Precision targeting of bacterial pathogen via bi-functional nanozyme activated by biofilm microenvironment. Description: Huang, Yue, et al. Precision targeting of bacterial pathogen via bi-functional nanozyme activated by biofilm microenvironment. ''Biomaterials''. 2021 Jan; '''268''': 120581
Predicting drug-metagenome interactions: Variation in the microbial beta-glucuronidase level in the human gut metagenomes. Description: Elmassry, Moamen M, et al. Predicting drug-metagenome interactions: Variation in the microbial beta-glucuronidase level in the human gut metagenomes. ''PLoS One''. 2021; '''16''' (1):e0244876
Predictive Added Value of Selected Plasma Lipids to a Re-estimated Minimal Risk Tool. Description: Bodini, Antonella, et al. Predictive Added Value of Selected Plasma Lipids to a Re-estimated Minimal Risk Tool. ''Front Cardiovasc Med''. 2021; '''8''': 682785
RT-qPCR assay for detection of mink astrovirus in outbreaks of diarrhea on Danish mink farms. Description: Barsoe, Sofie, et al. RT-qPCR assay for detection of mink astrovirus in outbreaks of diarrhea on Danish mink farms. ''PLoS One''. 2021; '''16''' (5):e0252022
Seasonal Variation in Transcriptomic Profiling of Tetrastigma hemsleyanum Fully Developed Tuberous Roots Enriches Candidate Genes in Essential Metabolic Pathways and Phytohormone Signaling. Description: Xiang, Qianqian, et al. Seasonal Variation in Transcriptomic Profiling of Tetrastigma hemsleyanum Fully Developed Tuberous Roots Enriches Candidate Genes in Essential Metabolic Pathways and Phytohormone Signaling. ''Front Plant Sci''. 2021; '''12''': 659645
Selective DNA and Protein Isolation From Marine Macrophyte Surfaces. Description: Korlevic, Marino, et al. Selective DNA and Protein Isolation From Marine Macrophyte Surfaces. ''Front Microbiol''. 2021; '''12''': 665999
Solid-State and Theoretical Investigations of Some Banister-Type Macrocycles with 2,2'-Aldoxime-1,1'-Biphenyl Units. Description: Stroia, Ioan, et al. Solid-State and Theoretical Investigations of Some Banister-Type Macrocycles with 2,2'-Aldoxime-1,1'-Biphenyl Units. ''Front Chem''. 2021; '''9''': 750418
Specific Microbial Taxa and Functional Capacity Contribute to Chicken Abdominal Fat Deposition. Description: Xiang, Hai, et al. Specific Microbial Taxa and Functional Capacity Contribute to Chicken Abdominal Fat Deposition. ''Front Microbiol''. 2021; '''12''': 643025
Structural insight into the unique conformation of cystathionine beta-synthase from Toxoplasma gondii. Description: Fernandez-Rodriguez, Carmen, et al. Structural insight into the unique conformation of cystathionine beta-synthase from Toxoplasma gondii. ''Comput Struct Biotechnol J''. 2021; '''19''': 3542-3555
Struo2: efficient metagenome profiling database construction for ever-expanding microbial genome datasets. Description: Youngblut, Nicholas D, et al. Struo2: efficient metagenome profiling database construction for ever-expanding microbial genome datasets. ''PeerJ''. 2021; '''9''': e12198
Sugarcane/peanut intercropping system improves physicochemical properties by changing N and P cycling and organic matter turnover in root zone soil. Description: Tang, Xiumei, et al. Sugarcane/peanut intercropping system improves physicochemical properties by changing N and P cycling and organic matter turnover in root zone soil. ''PeerJ''. 2021; '''9''': e10880
Taxonomic, functional and expression analysis of viral communities associated with marine sponges. Description: Nguyen, Mary, et al. Taxonomic, functional and expression analysis of viral communities associated with marine sponges. ''PeerJ''. 2021; '''9''': e10715
The elusive parasite: comparing macroscopic, immunological, and genomic approaches to identifying malaria in human skeletal remains from Sayala, Egypt (third to sixth centuries AD). Description: Loufouma Mbouaka, Alvie, et al. The elusive parasite: comparing macroscopic, immunological, and genomic approaches to identifying malaria in human skeletal remains from Sayala, Egypt (third to sixth centuries AD). ''Archaeol Anthropol Sci''. 2021; '''13''' (7):115
The Genomic Impact of Mycoheterotrophy in Orchids. Description: Jakalski, Marcin, et al. The Genomic Impact of Mycoheterotrophy in Orchids. ''Front Plant Sci''. 2021; '''12''': 632033
The gut virome in Irritable Bowel Syndrome differs from that of controls. Description: Coughlan, S, et al. The gut virome in Irritable Bowel Syndrome differs from that of controls. ''Gut Microbes''. 2021 Jan-Dec; '''13''' (1):1-15
The microbiome of deep-sea fish reveals new microbial species and a sparsity of antibiotic resistance genes. Description: Collins, Fergus W J, et al. The microbiome of deep-sea fish reveals new microbial species and a sparsity of antibiotic resistance genes. ''Gut Microbes''. 2021 Jan-Dec; '''13''' (1):1-13
The Molecular Basis of Kale Domestication: Transcriptional Profiling of Developing Leaves Provides New Insights Into the Evolution of a Brassica oleracea Vegetative Morphotype. Description: Arias, Tatiana, et al. The Molecular Basis of Kale Domestication: Transcriptional Profiling of Developing Leaves Provides New Insights Into the Evolution of a Brassica oleracea Vegetative Morphotype. ''Front Plant Sci''. 2021; '''12''': 637115
The Transcriptional Response of Soil Bacteria to Long-Term Warming and Short-Term Seasonal Fluctuations in a Terrestrial Forest. Description: Roy Chowdhury, Priyanka, et al. The Transcriptional Response of Soil Bacteria to Long-Term Warming and Short-Term Seasonal Fluctuations in a Terrestrial Forest. ''Front Microbiol''. 2021; '''12''': 666558
Timing the origin of eukaryotic cellular complexity with ancient duplications. Description: Vosseberg, Julian, et al. Timing the origin of eukaryotic cellular complexity with ancient duplications. ''Nat Ecol Evol''. 2021 Jan; '''5''' (1):92-100
Transcriptional Activity of Predominant Streptococcus Species at Multiple Oral Sites Associate With Periodontal Status. Description: Belstrom, Daniel, et al. Transcriptional Activity of Predominant Streptococcus Species at Multiple Oral Sites Associate With Periodontal Status. ''Front Cell Infect Microbiol''. 2021; '''11''': 752664
Transcriptome Atlas of 16 Donkey Tissues. Description: Wang, Yinan, et al. Transcriptome Atlas of 16 Donkey Tissues. ''Front Genet''. 2021; '''12''': 682734
Transcriptomic and Metabolomic Data Reveal the Key Metabolic Pathways Affecting Streltzoviella insularis (Staudinger) (Lepidoptera: Cossidae) Larvae During Overwintering. Description: Pei, Jiahe, et al. Transcriptomic and Metabolomic Data Reveal the Key Metabolic Pathways Affecting Streltzoviella insularis (Staudinger) (Lepidoptera: Cossidae) Larvae During Overwintering. ''Front Physiol''. 2021; '''12''': 655059
Trehalose-Induced Remodelling of the Human Microbiota Affects Clostridioides difficile Infection Outcome in an In Vitro Colonic Model: A Pilot Study. Description: Buckley, Anthony M, et al. Trehalose-Induced Remodelling of the Human Microbiota Affects Clostridioides difficile Infection Outcome in an In Vitro Colonic Model: A Pilot Study. ''Front Cell Infect Microbiol''. 2021; '''11''': 670935
Ultrastructural and Functional Analysis of a Novel Extra-Axonemal Structure in Parasitic Trichomonads. Description: Coceres, Veronica M, et al. Ultrastructural and Functional Analysis of a Novel Extra-Axonemal Structure in Parasitic Trichomonads. ''Front Cell Infect Microbiol''. 2021; '''11''': 757185
Unraveling gene content variation across eukaryotic giant viruses based on network analyses and host associations. Description: Sun, Tsu-Wang, et al. Unraveling gene content variation across eukaryotic giant viruses based on network analyses and host associations. ''Virus Evol''. 2021; '''7''' (2):veab081
Variability in digestive and respiratory tract Ace2 expression is associated with the microbiome. Description: Koester, Sean T, et al. Variability in digestive and respiratory tract Ace2 expression is associated with the microbiome. ''PLoS One''. 2021; '''16''' (3):e0248730
Variation of Metagenome From Feedstock to Digestate in Full-Scale Biogas Plants. Description: Jiang, Fan, et al. Variation of Metagenome From Feedstock to Digestate in Full-Scale Biogas Plants. ''Front Microbiol''. 2021; '''12''': 660225
Virulence factor-related gut microbiota genes and immunoglobulin A levels as novel markers for machine learning-based classification of autism spectrum disorder. Description: Wang, Mingbang, et al. Virulence factor-related gut microbiota genes and immunoglobulin A levels as novel markers for machine learning-based classification of autism spectrum disorder. ''Comput Struct Biotechnol J''. 2021; '''19''': 545-554
Whole-Genome Analysis of Mycobacterium avium subsp. paratuberculosis IS900 Insertions Reveals Strain Type-Specific Modalities. Description: Conde, Cyril, et al. Whole-Genome Analysis of Mycobacterium avium subsp. paratuberculosis IS900 Insertions Reveals Strain Type-Specific Modalities. ''Front Microbiol''. 2021; '''12''': 660002
A framework for identifying the recent origins of mobile antibiotic resistance genes. Description: Ebmeyer, Stefan, et al. A framework for identifying the recent origins of mobile antibiotic resistance genes. ''Commun Biol''. 2021 Jan 4; '''4''' (1):8
Formulation and Characterization of Alginate-Based Membranes for the Potential Transdermal Delivery of Methotrexate. Description: Bajas, Dorothea, et al. Formulation and Characterization of Alginate-Based Membranes for the Potential Transdermal Delivery of Methotrexate. ''Polymers (Basel)''. 2021 Jan 4; '''13''' (1):
High-Throughput Metagenomics for Identification of Pathogens in the Clinical Settings. Description: Li, Na, et al. High-Throughput Metagenomics for Identification of Pathogens in the Clinical Settings. ''Small Methods''. 2021 Jan 4; '''5''' (1):2000792
Nerve growth factor interacts with CHRM4 and promotes neuroendocrine differentiation of prostate cancer and castration resistance. Description: Chen, Wei-Yu, et al. Nerve growth factor interacts with CHRM4 and promotes neuroendocrine differentiation of prostate cancer and castration resistance. ''Commun Biol''. 2021 Jan 4; '''4''' (1):22
A Multi-Omics Characterization of the Natural Product Potential of Tropical Filamentous Marine Cyanobacteria. Description: Leao, Tiago, et al. A Multi-Omics Characterization of the Natural Product Potential of Tropical Filamentous Marine Cyanobacteria. ''Mar Drugs''. 2021 Jan 6; '''19''' (1):
Functional plasticity in oyster gut microbiomes along a eutrophication gradient in an urbanized estuary. Description: Stevick, Rebecca J, et al. Functional plasticity in oyster gut microbiomes along a eutrophication gradient in an urbanized estuary. ''Anim Microbiome''. 2021 Jan 6; '''3''' (1):5
Effect of host breeds on gut microbiome and serum metabolome in meat rabbits. Description: Ye, Xiaoxing, et al. Effect of host breeds on gut microbiome and serum metabolome in meat rabbits. ''BMC Vet Res''. 2021 Jan 7; '''17''' (1):24
Nutrient-imbalanced conditions shift the interplay between zooplankton and gut microbiota. Description: Li, Yingdong, et al. Nutrient-imbalanced conditions shift the interplay between zooplankton and gut microbiota. ''BMC Genomics''. 2021 Jan 7; '''22''' (1):37
Re-purposing software for functional characterization of the microbiome. Description: Gardiner, Laura-Jayne, et al. Re-purposing software for functional characterization of the microbiome. ''Microbiome''. 2021 Jan 9; '''9''' (1):4
Bruchid beetle ovipositioning mediated defense responses in black gram pods. Description: Das, Debajit, et al. Bruchid beetle ovipositioning mediated defense responses in black gram pods. ''BMC Plant Biol''. 2021 Jan 11; '''21''' (1):38
Detection of Hypoxanthine from Inosine and Unusual Hydrolysis of Immunosuppressive Drug Azathioprine through the Formation of a Diruthenium(III) System. Description: Orts-Arroyo, Marta, et al. Detection of Hypoxanthine from Inosine and Unusual Hydrolysis of Immunosuppressive Drug Azathioprine through the Formation of a Diruthenium(III) System. ''Biosensors (Basel)''. 2021 Jan 11; '''11''' (1):
Full-Length Transcriptome Analysis of Four Different Tissues of Cephalotaxus oliveri. Description: He, Ziqing, et al. Full-Length Transcriptome Analysis of Four Different Tissues of Cephalotaxus oliveri. ''Int J Mol Sci''. 2021 Jan 14; '''22''' (2):
Reducing the cell lysis to enhance yield of acid-stable alpha amylase by deletion of multiple peptidoglycan hydrolase-related genes in Bacillus amyloliquefaciens. Description: Zhang, Jinfang, et al. Reducing the cell lysis to enhance yield of acid-stable alpha amylase by deletion of multiple peptidoglycan hydrolase-related genes in Bacillus amyloliquefaciens. ''Int J Biol Macromol''. 2021 Jan 15; '''167''': 777-786
Virome characterization of Cryphonectria parasitica isolates from Azerbaijan unveiled a new mymonavirus and a putative new RNA virus unrelated to described viral sequences. Description: Forgia, M, et al. Virome characterization of Cryphonectria parasitica isolates from Azerbaijan unveiled a new mymonavirus and a putative new RNA virus unrelated to described viral sequences. ''Virology''. 2021 Jan 15; '''553''': 51-61
Zero-, one-, two- and three-dimensional supramolecular architectures sustained by Se(...)O chalcogen bonding: A crystallographic survey. Description: Tiekink, Edward R T. Zero-, one-, two- and three-dimensional supramolecular architectures sustained by Se(...)O chalcogen bonding: A crystallographic survey. ''Coord Chem Rev''. 2021 Jan 15; '''427''': 213586
A high-quality de novo genome assembly of one swamp eel (Monopterus albus) strain with PacBio and Hi-C sequencing data. Description: Tian, Hai-Feng, et al. A high-quality de novo genome assembly of one swamp eel (Monopterus albus) strain with PacBio and Hi-C sequencing data. ''G3 (Bethesda)''. 2021 Jan 18; '''11''' (1):
Zn(II) and Cu(II)-Based Coordination Polymers and Metal Organic Frameworks by the of Use of 2-Pyridyl Oximes and 1,3,5-Benzenetricarboxylic Acid. Description: Mylonas-Margaritis, Ioannis, et al. Zn(II) and Cu(II)-Based Coordination Polymers and Metal Organic Frameworks by the of Use of 2-Pyridyl Oximes and 1,3,5-Benzenetricarboxylic Acid. ''Molecules''. 2021 Jan 18; '''26''' (2):
At Least Seven Distinct Rotavirus Genotype Constellations in Bats with Evidence of Reassortment and Zoonotic Transmissions. Description: Simsek, Ceren, et al. At Least Seven Distinct Rotavirus Genotype Constellations in Bats with Evidence of Reassortment and Zoonotic Transmissions. ''mBio''. 2021 Jan 19; '''12''' (1):
Horseshoe crab genomes reveal the evolution of genes and microRNAs after three rounds of whole genome duplication. Description: Nong, Wenyan, et al. Horseshoe crab genomes reveal the evolution of genes and microRNAs after three rounds of whole genome duplication. ''Commun Biol''. 2021 Jan 19; '''4''' (1):83
Prediction and analysis of metagenomic operons via MetaRon: a pipeline for prediction of Metagenome and whole-genome opeRons. Description: Zaidi, Syed Shujaat Ali, et al. Prediction and analysis of metagenomic operons via MetaRon: a pipeline for prediction of Metagenome and whole-genome opeRons. ''BMC Genomics''. 2021 Jan 19; '''22''' (1):60
Metagenomic analysis of the cow, sheep, reindeer and red deer rumen. Description: Glendinning, Laura, et al. Metagenomic analysis of the cow, sheep, reindeer and red deer rumen. ''Sci Rep''. 2021 Jan 21; '''11''' (1):1990
S. pseudintermedius and S. aureus lineages with transmission ability circulate as causative agents of infections in pets for years. Description: Ruiz-Ripa, Laura, et al. S. pseudintermedius and S. aureus lineages with transmission ability circulate as causative agents of infections in pets for years. ''BMC Vet Res''. 2021 Jan 21; '''17''' (1):42
Cortical Oxygenation Changes during Gastric Tube Feeding in Moderate- and Late-Preterm Babies: A NIRS Study. Description: Muelbert, Mariana, et al. Cortical Oxygenation Changes during Gastric Tube Feeding in Moderate- and Late-Preterm Babies: A NIRS Study. ''Nutrients''. 2021 Jan 25; '''13''' (2):
Role of human Pegivirus infections in whole Plasmodium falciparum sporozoite vaccination and controlled human malaria infection in African volunteers. Description: Tumbo, Anneth-Mwasi, et al. Role of human Pegivirus infections in whole Plasmodium falciparum sporozoite vaccination and controlled human malaria infection in African volunteers. ''Virol J''. 2021 Jan 26; '''18''' (1):28
Antimicrobial-specific response from resistance gene carriers studied in a natural, highly diverse microbiome. Description: Wicaksono, Wisnu Adi, et al. Antimicrobial-specific response from resistance gene carriers studied in a natural, highly diverse microbiome. ''Microbiome''. 2021 Jan 27; '''9''' (1):29
Global survey of miRNAs and tRNA-derived small RNAs from the human parasitic protist Trichomonas vaginalis. Description: Wang, Zhen-Sheng, et al. Global survey of miRNAs and tRNA-derived small RNAs from the human parasitic protist Trichomonas vaginalis. ''Parasit Vectors''. 2021 Jan 29; '''14''' (1):87
Design and Synthesis of N-Substituted 3,4-Pyrroledicarboximides as Potential Anti-Inflammatory Agents. Description: Redzicka, Aleksandra, et al. Design and Synthesis of N-Substituted 3,4-Pyrroledicarboximides as Potential Anti-Inflammatory Agents. ''Int J Mol Sci''. 2021 Jan 30; '''22''' (3):
Effectiveness of Online Mindfulness-Based Intervention (iMBI) on Inattention, Hyperactivity-Impulsivity, and Executive Functioning in College Emerging Adults with Attention-Deficit/Hyperactivity Disorder: A Study Protocol. Description: Pheh, Kai-Shuen, et al. Effectiveness of Online Mindfulness-Based Intervention (iMBI) on Inattention, Hyperactivity-Impulsivity, and Executive Functioning in College Emerging Adults with Attention-Deficit/Hyperactivity Disorder: A Study Protocol. ''Int J Environ Res Public Health''. 2021 Jan 30; '''18''' (3):
A methylotrophic origin of methanogenesis and early divergence of anaerobic multicarbon alkane metabolism. Description: Wang, Yinzhao, et al. A methylotrophic origin of methanogenesis and early divergence of anaerobic multicarbon alkane metabolism. ''Sci Adv''. 2021 Feb; '''7''' (7):
A region of the sex chromosome associated with population differences in diapause induction contains highly divergent alleles at clock genes. Description: Pruisscher, Peter, et al. A region of the sex chromosome associated with population differences in diapause induction contains highly divergent alleles at clock genes. ''Evolution''. 2021 Feb; '''75''' (2):490-500
Complete genome sequence of lovastatin producer Aspergillus terreus ATCC 20542 and evaluation of genomic diversity among A. terreus strains. Description: Ryngajllo, Malgorzata, et al. Complete genome sequence of lovastatin producer Aspergillus terreus ATCC 20542 and evaluation of genomic diversity among A. terreus strains. ''Appl Microbiol Biotechnol''. 2021 Feb; '''105''' (4):1615-1627
Eukaryotic translation initiation factor 5A and its posttranslational modifications play an important role in proliferation and potentially in differentiation of the human enteric protozoan parasite Entamoeba histolytica. Description: Jeelani, Ghulam, et al. Eukaryotic translation initiation factor 5A and its posttranslational modifications play an important role in proliferation and potentially in differentiation of the human enteric protozoan parasite Entamoeba histolytica. ''PLoS Pathog''. 2021 Feb; '''17''' (2):e1008909
Ge-Fe Carbonyl Cluster Compounds: Ionic Liquids-Based Synthesis, Structures, and Properties. Description: Wolf, Silke, et al. Ge-Fe Carbonyl Cluster Compounds: Ionic Liquids-Based Synthesis, Structures, and Properties. ''ChemistryOpen''. 2021 Feb; '''10''' (2):171-180
Performance of the coronary calcium score in an outpatient chest pain clinic and strategies for risk stratification. Description: Huang, Weiting, et al. Performance of the coronary calcium score in an outpatient chest pain clinic and strategies for risk stratification. ''Clin Cardiol''. 2021 Feb; '''44''' (2):267-275
Photochemistry with Chlorine Trifluoride: Syntheses and Characterization of Difluorooxychloronium(V) Hexafluorido(non)metallates(V), [ClOF2 ][MF6 ] (M=V, Nb, Ta, Ru, Os, Ir, P, Sb). Description: Scheibe, Benjamin, et al. Photochemistry with Chlorine Trifluoride: Syntheses and Characterization of Difluorooxychloronium(V) Hexafluorido(non)metallates(V), [ClOF2 ][MF6 ] (M=V, Nb, Ta, Ru, Os, Ir, P, Sb). ''Chemistry''. 2021 Feb 1; '''27''' (7):2381-2392
Tetrahydrothiophene-Based Ionic Liquids: Synthesis and Thermodynamic Characterizations. Description: Schmitz, Alexa, et al. Tetrahydrothiophene-Based Ionic Liquids: Synthesis and Thermodynamic Characterizations. ''ChemistryOpen''. 2021 Feb; '''10''' (2):153-163
New Pharmaceutical Salts of Trazodone. Description: Jaskowska, Jolanta, et al. New Pharmaceutical Salts of Trazodone. ''Molecules''. 2021 Feb 2; '''26''' (3):
De Novo Transcriptomic Analyses Revealed Some Detoxification Genes and Related Pathways Responsive to Noposion Yihaogong((R)) 5% EC (Lambda-Cyhalothrin 5%) Exposure in Spodoptera frugiperda Third-Instar Larvae. Description: Hafeez, Muhammad, et al. De Novo Transcriptomic Analyses Revealed Some Detoxification Genes and Related Pathways Responsive to Noposion Yihaogong((R)) 5% EC (Lambda-Cyhalothrin 5%) Exposure in Spodoptera frugiperda Third-Instar Larvae. ''Insects''. 2021 Feb 3; '''12''' (2):
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae). Description: Zhou, Yang, et al. The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae). ''Genome Biol Evol''. 2021 Feb 3; '''13''' (2):
The First Whole Genome Sequence and Characterisation of Avian Nephritis Virus Genotype 3. Description: Lagan Tregaskis, Paula, et al. The First Whole Genome Sequence and Characterisation of Avian Nephritis Virus Genotype 3. ''Viruses''. 2021 Feb 3; '''13''' (2):
Whole-Genome Comparisons of Ergot Fungi Reveals the Divergence and Evolution of Species within the Genus Claviceps Are the Result of Varying Mechanisms Driving Genome Evolution and Host Range Expansion. Description: Wyka, Stephen A, et al. Whole-Genome Comparisons of Ergot Fungi Reveals the Divergence and Evolution of Species within the Genus Claviceps Are the Result of Varying Mechanisms Driving Genome Evolution and Host Range Expansion. ''Genome Biol Evol''. 2021 Feb 3; '''13''' (2):
Genome-scale phylogenetic analyses confirm Olpidium as the closest living zoosporic fungus to the non-flagellated, terrestrial fungi. Description: Chang, Ying, et al. Genome-scale phylogenetic analyses confirm Olpidium as the closest living zoosporic fungus to the non-flagellated, terrestrial fungi. ''Sci Rep''. 2021 Feb 5; '''11''' (1):3217
Utilization of low-molecular-weight organic compounds by the filterable fraction of a lotic microbiome. Description: Ghuneim, Lydia-Ann J, et al. Utilization of low-molecular-weight organic compounds by the filterable fraction of a lotic microbiome. ''FEMS Microbiol Ecol''. 2021 Feb 5; '''97''' (2):
Signaling Nodes Associated with Endoplasmic Reticulum Stress during NAFLD Progression. Description: Koo, Ja Hyun, et al. Signaling Nodes Associated with Endoplasmic Reticulum Stress during NAFLD Progression. ''Biomolecules''. 2021 Feb 8; '''11''' (2):
A Novel Trichomonas vaginalis Surface Protein Modulates Parasite Attachment via Protein:Host Cell Proteoglycan Interaction. Description: Molgora, Brenda M, et al. A Novel Trichomonas vaginalis Surface Protein Modulates Parasite Attachment via Protein:Host Cell Proteoglycan Interaction. ''mBio''. 2021 Feb 9; '''12''' (1):
Elizabethkingia Intra-Abdominal Infection and Related Trimethoprim-Sulfamethoxazole Resistance: A Clinical-Genomic Study. Description: Teng, Ling-Chiao, et al. Elizabethkingia Intra-Abdominal Infection and Related Trimethoprim-Sulfamethoxazole Resistance: A Clinical-Genomic Study. ''Antibiotics (Basel)''. 2021 Feb 9; '''10''' (2):
Genomic analysis of dibenzofuran-degrading Pseudomonas veronii strain Pvy reveals its biodegradative versatility. Description: Lopez-Echartea, Eglantina, et al. Genomic analysis of dibenzofuran-degrading Pseudomonas veronii strain Pvy reveals its biodegradative versatility. ''G3 (Bethesda)''. 2021 Feb 9; '''11''' (2):
Sulfur Metabolites Play Key System-Level Roles in Modulating Denitrification. Description: Otwell, Anne E, et al. Sulfur Metabolites Play Key System-Level Roles in Modulating Denitrification. ''mSystems''. 2021 Feb 9; '''6''' (1):
The draft genome sequence of the grove snail Cepaea nemoralis. Description: Saenko, Suzanne V, et al. The draft genome sequence of the grove snail Cepaea nemoralis. ''G3 (Bethesda)''. 2021 Feb 9; '''11''' (2):
Integrated analyses of the transcriptome and small RNA of the hemiparasitic plant Monochasma savatieri before and after establishment of parasite-host association. Description: Chen, Lanlan, et al. Integrated analyses of the transcriptome and small RNA of the hemiparasitic plant Monochasma savatieri before and after establishment of parasite-host association. ''BMC Plant Biol''. 2021 Feb 10; '''21''' (1):90
Ruminal resistome of dairy cattle is individualized and the resistotypes are associated with milking traits. Description: Xue, Ming-Yuan, et al. Ruminal resistome of dairy cattle is individualized and the resistotypes are associated with milking traits. ''Anim Microbiome''. 2021 Feb 10; '''3''' (1):18
Transcriptome assisted label free proteomics of hepatic tissue in response to both dietary restriction and compensatory growth in cattle. Description: Mullins, Yvonne, et al. Transcriptome assisted label free proteomics of hepatic tissue in response to both dietary restriction and compensatory growth in cattle. ''J Proteomics''. 2021 Feb 10; '''232''': 104048
Metatranscriptome Analysis of Sympatric Bee Species Identifies Bee Virus Variants and a New Virus, Andrena-Associated Bee Virus-1. Description: Daughenbaugh, Katie F, et al. Metatranscriptome Analysis of Sympatric Bee Species Identifies Bee Virus Variants and a New Virus, Andrena-Associated Bee Virus-1. ''Viruses''. 2021 Feb 12; '''13''' (2):
Gentamicin Adsorption onto Soil Particles Prevents Overall Short-Term Effects on the Soil Microbiome and Resistome. Description: Sanchez-Cid, Concepcion, et al. Gentamicin Adsorption onto Soil Particles Prevents Overall Short-Term Effects on the Soil Microbiome and Resistome. ''Antibiotics (Basel)''. 2021 Feb 15; '''10''' (2):
Microbiome-based environmental monitoring of a dairy processing facility highlights the challenges associated with low microbial-load samples. Description: McHugh, Aoife J, et al. Microbiome-based environmental monitoring of a dairy processing facility highlights the challenges associated with low microbial-load samples. ''NPJ Sci Food''. 2021 Feb 15; '''5''' (1):4
Organoplatinum(II) Complexes Self-Assemble and Recognize AT-Rich Duplex DNA Sequences. Description: Zamora, Ana, et al. Organoplatinum(II) Complexes Self-Assemble and Recognize AT-Rich Duplex DNA Sequences. ''Inorg Chem''. 2021 Feb 15; '''60''' (4):2178-2187
Characterization of the human skin resistome and identification of two microbiota cutotypes. Description: Li, Zhiming, et al. Characterization of the human skin resistome and identification of two microbiota cutotypes. ''Microbiome''. 2021 Feb 17; '''9''' (1):47
Comparative genomics reveals broad genetic diversity, extensive recombination and nascent ecological adaptation in Micrococcus luteus. Description: Li, Yisong, et al. Comparative genomics reveals broad genetic diversity, extensive recombination and nascent ecological adaptation in Micrococcus luteus. ''BMC Genomics''. 2021 Feb 18; '''22''' (1):124
Insights into long non-coding RNA regulation of anthocyanin carrot root pigmentation. Description: Chialva, Constanza, et al. Insights into long non-coding RNA regulation of anthocyanin carrot root pigmentation. ''Sci Rep''. 2021 Feb 18; '''11''' (1):4093
Limited effects of long-term daily cranberry consumption on the gut microbiome in a placebo-controlled study of women with recurrent urinary tract infections. Description: Straub, Timothy J, et al. Limited effects of long-term daily cranberry consumption on the gut microbiome in a placebo-controlled study of women with recurrent urinary tract infections. ''BMC Microbiol''. 2021 Feb 18; '''21''' (1):53
De Novo Transcriptome Assembly of Two Microsorum Fern Species Identifies Enzymes Required for Two Upstream Pathways of Phytoecdysteroids. Description: Sripinyowanich, Siriporn, et al. De Novo Transcriptome Assembly of Two Microsorum Fern Species Identifies Enzymes Required for Two Upstream Pathways of Phytoecdysteroids. ''Int J Mol Sci''. 2021 Feb 19; '''22''' (4):
An Expanded Gene Catalog of Mouse Gut Metagenomes. Description: Zhu, Jiahui, et al. An Expanded Gene Catalog of Mouse Gut Metagenomes. ''mSphere''. 2021 Feb 24; '''6''' (1):
Evidence for reduced immune gene diversity and activity during the evolution of termites. Description: He, Shulin, et al. Evidence for reduced immune gene diversity and activity during the evolution of termites. ''Proc Biol Sci''. 2021 Feb 24; '''288''' (1945):20203168
The Distribution of Several Genomic Virulence Determinants Does Not Corroborate the Established Serotyping Classification of Bacillus thuringiensis. Description: Shikov, Anton E, et al. The Distribution of Several Genomic Virulence Determinants Does Not Corroborate the Established Serotyping Classification of Bacillus thuringiensis. ''Int J Mol Sci''. 2021 Feb 24; '''22''' (5):
Overexpression of A Biotic Stress-Inducible Pvgstu Gene Activates Early Protective Responses in Tobacco under Combined Heat and Drought. Description: Stavridou, Evangelia, et al. Overexpression of A Biotic Stress-Inducible Pvgstu Gene Activates Early Protective Responses in Tobacco under Combined Heat and Drought. ''Int J Mol Sci''. 2021 Feb 26; '''22''' (5):
A chromosome-scale assembly of allotetraploid Brassica juncea (AABB) elucidates comparative architecture of the A and B genomes. Description: Paritosh, Kumar, et al. A chromosome-scale assembly of allotetraploid Brassica juncea (AABB) elucidates comparative architecture of the A and B genomes. ''Plant Biotechnol J''. 2021 Mar; '''19''' (3):602-614
A De Novo Transcriptome Assembly of Ceratopteris richardii Provides Insights into the Evolutionary Dynamics of Complex Gene Families in Land Plants. Description: Geng, Yuan, et al. A De Novo Transcriptome Assembly of Ceratopteris richardii Provides Insights into the Evolutionary Dynamics of Complex Gene Families in Land Plants. ''Genome Biol Evol''. 2021 Mar 1; '''13''' (3):
A Draft Genome Assembly of Culex pipiens pallens (Diptera: Culicidae) Using PacBio Sequencing. Description: Peng, Cheng, et al. A Draft Genome Assembly of Culex pipiens pallens (Diptera: Culicidae) Using PacBio Sequencing. ''Genome Biol Evol''. 2021 Mar 1; '''13''' (3):
A Highly Contiguous Genome Assembly of a Polyphagous Predatory Mite Stratiolaelaps scimitus (Womersley) (Acari: Laelapidae). Description: Yan, Yi, et al. A Highly Contiguous Genome Assembly of a Polyphagous Predatory Mite Stratiolaelaps scimitus (Womersley) (Acari: Laelapidae). ''Genome Biol Evol''. 2021 Mar 1; '''13''' (3):
Anaerobic bacterial degradation of protein and lipid macromolecules in subarctic marine sediment. Description: Pelikan, Claus, et al. Anaerobic bacterial degradation of protein and lipid macromolecules in subarctic marine sediment. ''ISME J''. 2021 Mar; '''15''' (3):833-847
Anaerobic endosymbiont generates energy for ciliate host by denitrification. Description: Graf, Jon S, et al. Anaerobic endosymbiont generates energy for ciliate host by denitrification. ''Nature''. 2021 Mar; '''591''' (7850):445-450
A new emu genome illuminates the evolution of genome configuration and nuclear architecture of avian chromosomes. Description: Liu, Jing, et al. A new emu genome illuminates the evolution of genome configuration and nuclear architecture of avian chromosomes. ''Genome Res''. 2021 Mar; '''31''' (3):497-511
BRAKER2: automatic eukaryotic genome annotation with GeneMark-EP+ and AUGUSTUS supported by a protein database. Description: Bruna, Tomas, et al. BRAKER2: automatic eukaryotic genome annotation with GeneMark-EP+ and AUGUSTUS supported by a protein database. ''NAR Genom Bioinform''. 2021 Mar; '''3''' (1):lqaa108
Complete genome sequence of Photobacterium ganghwense C2.2: A new polyhydroxyalkanoate production candidate. Description: Lascu, Irina, et al. Complete genome sequence of Photobacterium ganghwense C2.2: A new polyhydroxyalkanoate production candidate. ''Microbiologyopen''. 2021 Mar; '''10''' (2):e1182
Discovery of PTN as a serum-based biomarker of pro-metastatic prostate cancer. Description: Liu, Shiqin, et al. Discovery of PTN as a serum-based biomarker of pro-metastatic prostate cancer. ''Br J Cancer''. 2021 Mar; '''124''' (5):896-900
Genomic characterization of 99 viruses from the bunyavirus families Nairoviridae, Peribunyaviridae, and Phenuiviridae, including 35 previously unsequenced viruses. Description: Kapuscinski, Marylee L, et al. Genomic characterization of 99 viruses from the bunyavirus families Nairoviridae, Peribunyaviridae, and Phenuiviridae, including 35 previously unsequenced viruses. ''PLoS Pathog''. 2021 Mar; '''17''' (3):e1009315
Highly homogeneous microbial communities dominated by Mycoplasma pneumoniae instead of increased resistance to macrolide antibiotics is the characteristic of lower respiratory tract microbiome of children with refractory Mycoplasma pneumoniae pneumonia. Description: Chen, Jinglong, et al. Highly homogeneous microbial communities dominated by Mycoplasma pneumoniae instead of increased resistance to macrolide antibiotics is the characteristic of lower respiratory tract microbiome of children with refractory Mycoplasma pneumoniae pneumonia. ''Transl Pediatr''. 2021 Mar; '''10''' (3):604-615
Microbial ecology of the newly discovered serpentinite-hosted Old City hydrothermal field (southwest Indian ridge). Description: Lecoeuvre, Aurelien, et al. Microbial ecology of the newly discovered serpentinite-hosted Old City hydrothermal field (southwest Indian ridge). ''ISME J''. 2021 Mar; '''15''' (3):818-832
Near-Chromosome-Level Genome Assembly of the Dark Septate Endophyte Laburnicola rhizohalophila: A Model for Investigating Root-Fungus Symbiosis. Description: He, Xinghua, et al. Near-Chromosome-Level Genome Assembly of the Dark Septate Endophyte Laburnicola rhizohalophila: A Model for Investigating Root-Fungus Symbiosis. ''Genome Biol Evol''. 2021 Mar 1; '''13''' (3):
New insights into the effect of ethanol and volatile fatty acids proportions on methanogenic activities and pathways. Description: Du, Jin, et al. New insights into the effect of ethanol and volatile fatty acids proportions on methanogenic activities and pathways. ''Environ Res''. 2021 Mar; '''194''': 110644
Plant resistome profiling in evolutionary old bog vegetation provides new clues to understand emergence of multi-resistance. Description: Obermeier, Melanie Maria, et al. Plant resistome profiling in evolutionary old bog vegetation provides new clues to understand emergence of multi-resistance. ''ISME J''. 2021 Mar; '''15''' (3):921-937
The use of mobile health interventions for gestational diabetes mellitus: a descriptive literature review. Description: Zahmatkeshan, Maryam, et al. The use of mobile health interventions for gestational diabetes mellitus: a descriptive literature review. ''J Med Life''. 2021 Mar-Apr; '''14''' (2):131-141
Calf Diarrhea Caused by Prolonged Expansion of Autochthonous Gut Enterobacteriaceae and Their Lytic Bacteriophages. Description: Whon, Tae Woong, et al. Calf Diarrhea Caused by Prolonged Expansion of Autochthonous Gut Enterobacteriaceae and Their Lytic Bacteriophages. ''mSystems''. 2021 Mar 2; '''6''' (2):
Dysbiosis in Metabolic Genes of the Gut Microbiomes of Patients with an Ileo-anal Pouch Resembles That Observed in Crohn's Disease. Description: Dubinsky, Vadim, et al. Dysbiosis in Metabolic Genes of the Gut Microbiomes of Patients with an Ileo-anal Pouch Resembles That Observed in Crohn's Disease. ''mSystems''. 2021 Mar 2; '''6''' (2):
Accurate and sensitive detection of microbial eukaryotes from whole metagenome shotgun sequencing. Description: Lind, Abigail L, et al. Accurate and sensitive detection of microbial eukaryotes from whole metagenome shotgun sequencing. ''Microbiome''. 2021 Mar 3; '''9''' (1):58
In Vivo Competitions between Fibrobacter succinogenes, Ruminococcus flavefaciens, and Ruminoccus albus in a Gnotobiotic Sheep Model Revealed by Multi-Omic Analyses. Description: Yeoman, Carl J, et al. In Vivo Competitions between Fibrobacter succinogenes, Ruminococcus flavefaciens, and Ruminoccus albus in a Gnotobiotic Sheep Model Revealed by Multi-Omic Analyses. ''mBio''. 2021 Mar 3; '''12''' (2):
Differences in the gut microbiomes of dogs and wolves: roles of antibiotics and starch. Description: Liu, Yuting, et al. Differences in the gut microbiomes of dogs and wolves: roles of antibiotics and starch. ''BMC Vet Res''. 2021 Mar 6; '''17''' (1):112
Breast milk urea as a nitrogen source for urease positive Bifidobacterium infantis. Description: Schimmel, Patrick, et al. Breast milk urea as a nitrogen source for urease positive Bifidobacterium infantis. ''FEMS Microbiol Ecol''. 2021 Mar 8; '''97''' (3):
Chromosome-Scale Genome Assemblies of Aphids Reveal Extensively Rearranged Autosomes and Long-Term Conservation of the X Chromosome. Description: Mathers, Thomas C, et al. Chromosome-Scale Genome Assemblies of Aphids Reveal Extensively Rearranged Autosomes and Long-Term Conservation of the X Chromosome. ''Mol Biol Evol''. 2021 Mar 9; '''38''' (3):856-875
Non-responder phenotype reveals apparent microbiome-wide antibiotic tolerance in the murine gut. Description: Diener, Christian, et al. Non-responder phenotype reveals apparent microbiome-wide antibiotic tolerance in the murine gut. ''Commun Biol''. 2021 Mar 9; '''4''' (1):316
Removing auto-activators from yeast-two-hybrid assays by conditional negative selection. Description: Shivhare, Devendra, et al. Removing auto-activators from yeast-two-hybrid assays by conditional negative selection. ''Sci Rep''. 2021 Mar 9; '''11''' (1):5477
Role of dietary fiber in the recovery of the human gut microbiome and its metabolome. Description: Tanes, Ceylan, et al. Role of dietary fiber in the recovery of the human gut microbiome and its metabolome. ''Cell Host Microbe''. 2021 Mar 10; '''29''' (3):394-407.e5
Monitoring Microbial Populations and Antibiotic Resistance Gene Enrichment Associated with Arctic Waste Stabilization Ponds. Description: Gromala, Monica, et al. Monitoring Microbial Populations and Antibiotic Resistance Gene Enrichment Associated with Arctic Waste Stabilization Ponds. ''Appl Environ Microbiol''. 2021 Mar 11; '''87''' (7):
Nutrient-driven genome evolution revealed by comparative genomics of chrysomonad flagellates. Description: Majda, Stephan, et al. Nutrient-driven genome evolution revealed by comparative genomics of chrysomonad flagellates. ''Commun Biol''. 2021 Mar 12; '''4''' (1):328
Recovery of complete genomes and non-chromosomal replicons from activated sludge enrichment microbial communities with long read metagenome sequencing. Description: Arumugam, Krithika, et al. Recovery of complete genomes and non-chromosomal replicons from activated sludge enrichment microbial communities with long read metagenome sequencing. ''NPJ Biofilms Microbiomes''. 2021 Mar 16; '''7''' (1):23
The microbiome of the Black Sea water column analyzed by shotgun and genome centric metagenomics. Description: Cabello-Yeves, Pedro J, et al. The microbiome of the Black Sea water column analyzed by shotgun and genome centric metagenomics. ''Environ Microbiome''. 2021 Mar 16; '''16''' (1):5
Prebiotic properties of Bacillus coagulans MA-13: production of galactoside hydrolyzing enzymes and characterization of the transglycosylation properties of a GH42 beta-galactosidase. Description: Aulitto, Martina, et al. Prebiotic properties of Bacillus coagulans MA-13: production of galactoside hydrolyzing enzymes and characterization of the transglycosylation properties of a GH42 beta-galactosidase. ''Microb Cell Fact''. 2021 Mar 18; '''20''' (1):71
Xylitol enhances synthesis of propionate in the colon via cross-feeding of gut microbiota. Description: Xiang, Shasha, et al. Xylitol enhances synthesis of propionate in the colon via cross-feeding of gut microbiota. ''Microbiome''. 2021 Mar 18; '''9''' (1):62
A chromosome-level genome of the spider Trichonephila antipodiana reveals the genetic basis of its polyphagy and evidence of an ancient whole-genome duplication event. Description: Fan, Zheng, et al. A chromosome-level genome of the spider Trichonephila antipodiana reveals the genetic basis of its polyphagy and evidence of an ancient whole-genome duplication event. ''Gigascience''. 2021 Mar 19; '''10''' (3):
A multiomics approach to identify host-microbe alterations associated with infection severity in diabetic foot infections: a pilot study. Description: Radzieta, Michael, et al. A multiomics approach to identify host-microbe alterations associated with infection severity in diabetic foot infections: a pilot study. ''NPJ Biofilms Microbiomes''. 2021 Mar 22; '''7''' (1):29
Revealing taxon-specific heavy metal-resistance mechanisms in denitrifying phosphorus removal sludge using genome-centric metaproteomics. Description: Lin, Yuan, et al. Revealing taxon-specific heavy metal-resistance mechanisms in denitrifying phosphorus removal sludge using genome-centric metaproteomics. ''Microbiome''. 2021 Mar 22; '''9''' (1):67
Shifts in morphology, gene expression, and selection underlie web loss in Hawaiian Tetragnatha spiders. Description: Berger, Cory A, et al. Shifts in morphology, gene expression, and selection underlie web loss in Hawaiian Tetragnatha spiders. ''BMC Ecol Evol''. 2021 Mar 22; '''21''' (1):48
Promoting photocatalytic CO2 reduction with a molecular copper purpurin chromophore. Description: Yuan, Huiqing, et al. Promoting photocatalytic CO2 reduction with a molecular copper purpurin chromophore. ''Nat Commun''. 2021 Mar 23; '''12''' (1):1835
Antimicrobial Hexaaquacopper(II) Complexes with Novel Polyiodide Chains. Description: Edis, Zehra, et al. Antimicrobial Hexaaquacopper(II) Complexes with Novel Polyiodide Chains. ''Polymers (Basel)''. 2021 Mar 24; '''13''' (7):
A chromosome-level genome assembly for the Pacific oyster Crassostrea gigas. Description: Penaloza, Carolina, et al. A chromosome-level genome assembly for the Pacific oyster Crassostrea gigas. ''Gigascience''. 2021 Mar 25; '''10''' (3):
A Degeneration Gradient of Poplar Trees Contributes to the Taxonomic, Functional, and Resistome Diversity of Bacterial Communities in Rhizosphere Soils. Description: Liu, Juan, et al. A Degeneration Gradient of Poplar Trees Contributes to the Taxonomic, Functional, and Resistome Diversity of Bacterial Communities in Rhizosphere Soils. ''Int J Mol Sci''. 2021 Mar 26; '''22''' (7):
Detection of Tioman Virus in Pteropus vampyrus Near Flores, Indonesia. Description: Tsang, Susan M, et al. Detection of Tioman Virus in Pteropus vampyrus Near Flores, Indonesia. ''Viruses''. 2021 Mar 26; '''13''' (4):
Microbial predation accelerates granulation and modulates microbial community composition. Description: Chan, Siew Herng, et al. Microbial predation accelerates granulation and modulates microbial community composition. ''BMC Microbiol''. 2021 Mar 27; '''21''' (1):91
Atomic Structure of the Trichomonas vaginalis Double-Stranded RNA Virus 2. Description: Stevens, Alexander, et al. Atomic Structure of the Trichomonas vaginalis Double-Stranded RNA Virus 2. ''mBio''. 2021 Mar 30; '''12''' (2):
Casting Light on the Adaptation Mechanisms and Evolutionary History of the Widespread Sumerlaeota. Description: Fang, Yun, et al. Casting Light on the Adaptation Mechanisms and Evolutionary History of the Widespread Sumerlaeota. ''mBio''. 2021 Mar 30; '''12''' (2):
Molecular cloning, characterization, and expression analysis of a sex-biased transcriptional factor sox9 gene of mud crab Scylla paramamosain. Description: Wan, Haifu, et al. Molecular cloning, characterization, and expression analysis of a sex-biased transcriptional factor sox9 gene of mud crab Scylla paramamosain. ''Gene''. 2021 Mar 30; '''774''': 145423
Secretomic insight into the biomass hydrolysis potential of the phytopathogenic fungus Chrysoporthe cubensis. Description: Tavares, Murillo Peterlini, et al. Secretomic insight into the biomass hydrolysis potential of the phytopathogenic fungus Chrysoporthe cubensis. ''J Proteomics''. 2021 Mar 30; '''236''': 104121
A Novel Rubi-Like Virus in the Pacific Electric Ray (Tetronarce californica) Reveals the Complex Evolutionary History of the Matonaviridae. Description: Grimwood, Rebecca M, et al. A Novel Rubi-Like Virus in the Pacific Electric Ray (Tetronarce californica) Reveals the Complex Evolutionary History of the Matonaviridae. ''Viruses''. 2021 Mar 31; '''13''' (4):
Bacterial cyclic diguanylate signaling networks sense temperature. Description: Almblad, Henrik, et al. Bacterial cyclic diguanylate signaling networks sense temperature. ''Nat Commun''. 2021 Mar 31; '''12''' (1):1986
Connecting structure to function with the recovery of over 1000 high-quality metagenome-assembled genomes from activated sludge using long-read sequencing. Description: Singleton, Caitlin M, et al. Connecting structure to function with the recovery of over 1000 high-quality metagenome-assembled genomes from activated sludge using long-read sequencing. ''Nat Commun''. 2021 Mar 31; '''12''' (1):2009
OMAmer: tree-driven and alignment-free protein assignment to subfamilies outperforms closest sequence approaches. Description: Rossier, Victor, et al. OMAmer: tree-driven and alignment-free protein assignment to subfamilies outperforms closest sequence approaches. ''Bioinformatics''. 2021 Mar 31;
A metagenomic assessment of microbial communities in anaerobic bioreactors and sediments: Taxonomic and functional relationships. Description: Beraud-Martinez, Liov Karel, et al. A metagenomic assessment of microbial communities in anaerobic bioreactors and sediments: Taxonomic and functional relationships. ''Anaerobe''. 2021 Apr; '''68''': 102296
Conjugated secondary 12alpha-hydroxylated bile acids promote liver fibrogenesis. Description: Xie, Guoxiang, et al. Conjugated secondary 12alpha-hydroxylated bile acids promote liver fibrogenesis. ''EBioMedicine''. 2021 Apr; '''66''': 103290
De novo assembly of a new Olea europaea genome accession using nanopore sequencing. Description: Rao, Guodong, et al. De novo assembly of a new Olea europaea genome accession using nanopore sequencing. ''Hortic Res''. 2021 Apr 1; '''8''' (1):64
Elevated CO2 and nitrate levels increase wheat root-associated bacterial abundance and impact rhizosphere microbial community composition and function. Description: Usyskin-Tonne, Alla, et al. Elevated CO2 and nitrate levels increase wheat root-associated bacterial abundance and impact rhizosphere microbial community composition and function. ''ISME J''. 2021 Apr; '''15''' (4):1073-1084
Evaluation of the Pharmacokinetics and Exposure-Response Relationship of Dapagliflozin in Patients without Diabetes and with Chronic Kidney Disease. Description: van der Aart-van der Beek, Annemarie B, et al. Evaluation of the Pharmacokinetics and Exposure-Response Relationship of Dapagliflozin in Patients without Diabetes and with Chronic Kidney Disease. ''Clin Pharmacokinet''. 2021 Apr; '''60''' (4):517-525
Genotoxicity, oxidative stress, and biochemical biomarkers of exposure to green synthesized cadmium nanoparticles in Oreochromis niloticus (L.). Description: Ibrahim, Ahmed Th A, et al. Genotoxicity, oxidative stress, and biochemical biomarkers of exposure to green synthesized cadmium nanoparticles in Oreochromis niloticus (L.). ''Comp Biochem Physiol C Toxicol Pharmacol''. 2021 Apr; '''242''': 108942
Identification of a unique endoplasmic retention motif in the Xenopus GIRK5 channel and its contribution to oocyte maturation. Description: Rangel-Garcia, Claudia I, et al. Identification of a unique endoplasmic retention motif in the Xenopus GIRK5 channel and its contribution to oocyte maturation. ''FEBS Open Bio''. 2021 Apr; '''11''' (4):1093-1108
Sensitive protein alignments at tree-of-life scale using DIAMOND. Description: Buchfink, Benjamin, et al. Sensitive protein alignments at tree-of-life scale using DIAMOND. ''Nat Methods''. 2021 Apr; '''18''' (4):366-368
Shotgun metagenomics reveals distinct functional diversity and metabolic capabilities between 12 000-year-old permafrost and active layers on Muot da Barba Peider (Swiss Alps). Description: Perez-Mon, Carla, et al. Shotgun metagenomics reveals distinct functional diversity and metabolic capabilities between 12 000-year-old permafrost and active layers on Muot da Barba Peider (Swiss Alps). ''Microb Genom''. 2021 Apr; '''7''' (4):
The virome of German bats: comparing virus discovery approaches. Description: Kohl, Claudia, et al. The virome of German bats: comparing virus discovery approaches. ''Sci Rep''. 2021 Apr 1; '''11''' (1):7430
Trichomonas vaginalis infection impairs anion secretion in vaginal epithelium. Description: Xu, Jian-Bang, et al. Trichomonas vaginalis infection impairs anion secretion in vaginal epithelium. ''PLoS Negl Trop Dis''. 2021 Apr; '''15''' (4):e0009319
Two-step functional screen on multiple proteinaceous substrates reveals temperature-robust proteases with a broad-substrate range. Description: Garcia-Moyano, Antonio, et al. Two-step functional screen on multiple proteinaceous substrates reveals temperature-robust proteases with a broad-substrate range. ''Appl Microbiol Biotechnol''. 2021 Apr; '''105''' (8):3195-3209
An insight into the anticancer potential of carbamates and thiocarbamates of 10-demethoxy-10-methylaminocolchicine. Description: Krzywik, Julia, et al. An insight into the anticancer potential of carbamates and thiocarbamates of 10-demethoxy-10-methylaminocolchicine. ''Eur J Med Chem''. 2021 Apr 5; '''215''': 113282
Extended Evaluation of Viral Diversity in Lake Baikal through Metagenomics. Description: Butina, Tatyana V, et al. Extended Evaluation of Viral Diversity in Lake Baikal through Metagenomics. ''Microorganisms''. 2021 Apr 5; '''9''' (4):
Predicted Input of Uncultured Fungal Symbionts to a Lichen Symbiosis from Metagenome-Assembled Genomes. Description: Tagirdzhanova, Gulnara, et al. Predicted Input of Uncultured Fungal Symbionts to a Lichen Symbiosis from Metagenome-Assembled Genomes. ''Genome Biol Evol''. 2021 Apr 5; '''13''' (4):
Genome-Based Targeted Sequencing as a Reproducible Microbial Community Profiling Assay. Description: Benjamino, Jacquelynn, et al. Genome-Based Targeted Sequencing as a Reproducible Microbial Community Profiling Assay. ''mSphere''. 2021 Apr 7; '''6''' (2):
The reference genome and transcriptome of the limestone langur, Trachypithecus leucocephalus, reveal expansion of genes related to alkali tolerance. Description: Que, Tengcheng, et al. The reference genome and transcriptome of the limestone langur, Trachypithecus leucocephalus, reveal expansion of genes related to alkali tolerance. ''BMC Biol''. 2021 Apr 8; '''19''' (1):67
A Network Medicine Approach for Drug Repurposing in Duchenne Muscular Dystrophy. Description: Lombardo, Salvo Danilo, et al. A Network Medicine Approach for Drug Repurposing in Duchenne Muscular Dystrophy. ''Genes (Basel)''. 2021 Apr 9; '''12''' (4):
Terpenoid Biosynthesis Dominates among Secondary Metabolite Clusters in Mucoromycotina Genomes. Description: Koczyk, Grzegorz, et al. Terpenoid Biosynthesis Dominates among Secondary Metabolite Clusters in Mucoromycotina Genomes. ''J Fungi (Basel)''. 2021 Apr 9; '''7''' (4):
Combining Functional Genomics and Whole-Genome Sequencing to Detect Antibiotic Resistance Genes in Bacterial Strains Co-Occurring Simultaneously in a Brazilian Hospital. Description: Borelli, Tiago Cabral, et al. Combining Functional Genomics and Whole-Genome Sequencing to Detect Antibiotic Resistance Genes in Bacterial Strains Co-Occurring Simultaneously in a Brazilian Hospital. ''Antibiotics (Basel)''. 2021 Apr 11; '''10''' (4):
Cellular fate of intersex differentiation. Description: Wang, Xin, et al. Cellular fate of intersex differentiation. ''Cell Death Dis''. 2021 Apr 12; '''12''' (4):388
Genomic Architecture of Rapid Parallel Adaptation to Fresh Water in a Wild Fish. Description: Zong, Shao-Bing, et al. Genomic Architecture of Rapid Parallel Adaptation to Fresh Water in a Wild Fish. ''Mol Biol Evol''. 2021 Apr 13; '''38''' (4):1317-1329
Ground Speed Optical Estimator for Miniature UAV. Description: Chmielewski, Piotr, et al. Ground Speed Optical Estimator for Miniature UAV. ''Sensors (Basel)''. 2021 Apr 13; '''21''' (8):
Metagenomic Insights into the Metabolic and Ecological Functions of Abundant Deep-Sea Hydrothermal Vent DPANN Archaea. Description: Cai, Ruining, et al. Metagenomic Insights into the Metabolic and Ecological Functions of Abundant Deep-Sea Hydrothermal Vent DPANN Archaea. ''Appl Environ Microbiol''. 2021 Apr 13; '''87''' (9):
A New Pyrimidine Schiff Base with Selective Activities against Enterococcus faecalis and Gastric Adenocarcinoma. Description: Stolarczyk, Marcin, et al. A New Pyrimidine Schiff Base with Selective Activities against Enterococcus faecalis and Gastric Adenocarcinoma. ''Molecules''. 2021 Apr 15; '''26''' (8):
MetaPrism: A versatile toolkit for joint taxa/gene analysis of metagenomic sequencing data. Description: Kim, Jiwoong, et al. MetaPrism: A versatile toolkit for joint taxa/gene analysis of metagenomic sequencing data. ''G3 (Bethesda)''. 2021 Apr 15; '''11''' (4):
Antarctic Rahnella inusitata: A Producer of Cold-Stable beta-Galactosidase Enzymes. Description: Nunez-Montero, Kattia, et al. Antarctic Rahnella inusitata: A Producer of Cold-Stable beta-Galactosidase Enzymes. ''Int J Mol Sci''. 2021 Apr 16; '''22''' (8):
Field and classroom initiatives for portable sequence-based monitoring of dengue virus in Brazil. Description: Adelino, Talita Emile Ribeiro, et al. Field and classroom initiatives for portable sequence-based monitoring of dengue virus in Brazil. ''Nat Commun''. 2021 Apr 16; '''12''' (1):2296
Unraveling the Metabolic Potential of Asgardarchaeota in a Sediment from the Mediterranean Hydrocarbon-Contaminated Water Basin Mar Piccolo (Taranto, Italy). Description: Firrincieli, Andrea, et al. Unraveling the Metabolic Potential of Asgardarchaeota in a Sediment from the Mediterranean Hydrocarbon-Contaminated Water Basin Mar Piccolo (Taranto, Italy). ''Microorganisms''. 2021 Apr 16; '''9''' (4):
Integrated Analysis of the Transcriptome and Metabolome Revealed Candidate Genes Involved in GA3-Induced Dormancy Release in Leymus chinensis Seeds. Description: Li, Bing, et al. Integrated Analysis of the Transcriptome and Metabolome Revealed Candidate Genes Involved in GA3-Induced Dormancy Release in Leymus chinensis Seeds. ''Int J Mol Sci''. 2021 Apr 17; '''22''' (8):
Multi-omics analysis provides insights into lignocellulosic biomass degradation by Laetiporus sulphureus ATCC 52600. Description: de Figueiredo, Fernanda Lopes, et al. Multi-omics analysis provides insights into lignocellulosic biomass degradation by Laetiporus sulphureus ATCC 52600. ''Biotechnol Biofuels''. 2021 Apr 17; '''14''' (1):96
Differential expression of starch and sucrose metabolic genes linked to varying biomass yield in Miscanthus hybrids. Description: De Vega, Jose J, et al. Differential expression of starch and sucrose metabolic genes linked to varying biomass yield in Miscanthus hybrids. ''Biotechnol Biofuels''. 2021 Apr 19; '''14''' (1):98
Metagenomic shotgun sequencing reveals host species as an important driver of virome composition in mosquitoes. Description: Thongsripong, Panpim, et al. Metagenomic shotgun sequencing reveals host species as an important driver of virome composition in mosquitoes. ''Sci Rep''. 2021 Apr 19; '''11''' (1):8448
Discovery of a New, Recurrent Enzyme in Bacterial Phosphonate Degradation: (R)-1-Hydroxy-2-aminoethylphosphonate Ammonia-lyase. Description: Zangelmi, Erika, et al. Discovery of a New, Recurrent Enzyme in Bacterial Phosphonate Degradation: (R)-1-Hydroxy-2-aminoethylphosphonate Ammonia-lyase. ''Biochemistry''. 2021 Apr 20; '''60''' (15):1214-1225
Genome-Wide Analysis of PL7 Alginate Lyases in the Genus Zobellia. Description: Chernysheva, Nadezhda, et al. Genome-Wide Analysis of PL7 Alginate Lyases in the Genus Zobellia. ''Molecules''. 2021 Apr 20; '''26''' (8):
Dynamics of rumen gene expression, microbiome colonization, and their interplay in goats. Description: Pan, Xiangyu, et al. Dynamics of rumen gene expression, microbiome colonization, and their interplay in goats. ''BMC Genomics''. 2021 Apr 21; '''22''' (1):288
Establishment of Culex modestus in Belgium and a Glance into the Virome of Belgian Mosquito Species. Description: Wang, Lanjiao, et al. Establishment of Culex modestus in Belgium and a Glance into the Virome of Belgian Mosquito Species. ''mSphere''. 2021 Apr 21; '''6''' (2):
Exploring the Diversity of Fungal DyPs in Mangrove Soils to Produce and Characterize Novel Biocatalysts. Description: Ben Ayed, Amal, et al. Exploring the Diversity of Fungal DyPs in Mangrove Soils to Produce and Characterize Novel Biocatalysts. ''J Fungi (Basel)''. 2021 Apr 21; '''7''' (5):
Cytotoxic Activity of Piperazin-2-One-Based Structures: Cyclic Imines, Lactams, Aminophosphonates, and Their Derivatives. Description: Iwanejko, Jakub, et al. Cytotoxic Activity of Piperazin-2-One-Based Structures: Cyclic Imines, Lactams, Aminophosphonates, and Their Derivatives. ''Materials (Basel)''. 2021 Apr 22; '''14''' (9):
First Description of the Composition and the Functional Capabilities of the Skin Microbial Community Accompanying Severe Scabies Infestation in Humans. Description: Bernigaud, Charlotte, et al. First Description of the Composition and the Functional Capabilities of the Skin Microbial Community Accompanying Severe Scabies Infestation in Humans. ''Microorganisms''. 2021 Apr 23; '''9''' (5):
Characteristics and variation of fecal bacterial communities and functions in isolated systolic and diastolic hypertensive patients. Description: Wang, Pan, et al. Characteristics and variation of fecal bacterial communities and functions in isolated systolic and diastolic hypertensive patients. ''BMC Microbiol''. 2021 Apr 26; '''21''' (1):128
Comparison of bacterial communities and antibiotic resistance genes in oxidation ditches and membrane bioreactors. Description: Luo, Lifang, et al. Comparison of bacterial communities and antibiotic resistance genes in oxidation ditches and membrane bioreactors. ''Sci Rep''. 2021 Apr 26; '''11''' (1):8955
Genome of the destructive oomycete Phytophthora cinnamomi provides insights into its pathogenicity and adaptive potential. Description: Engelbrecht, Juanita, et al. Genome of the destructive oomycete Phytophthora cinnamomi provides insights into its pathogenicity and adaptive potential. ''BMC Genomics''. 2021 Apr 26; '''22''' (1):302
Genome sequence, transcriptome, and annotation of rodent malaria parasite Plasmodium yoelii nigeriensis N67. Description: Zhang, Cui, et al. Genome sequence, transcriptome, and annotation of rodent malaria parasite Plasmodium yoelii nigeriensis N67. ''BMC Genomics''. 2021 Apr 26; '''22''' (1):303
Identification of the Potential Role of the Rumen Microbiome in Milk Protein and Fat Synthesis in Dairy Cows Using Metagenomic Sequencing. Description: Wu, Xin, et al. Identification of the Potential Role of the Rumen Microbiome in Milk Protein and Fat Synthesis in Dairy Cows Using Metagenomic Sequencing. ''Animals (Basel)''. 2021 Apr 26; '''11''' (5):
A Gadolinium(III) Complex Based on the Thymine Nucleobase with Properties Suitable for Magnetic Resonance Imaging. Description: Orts-Arroyo, Marta, et al. A Gadolinium(III) Complex Based on the Thymine Nucleobase with Properties Suitable for Magnetic Resonance Imaging. ''Int J Mol Sci''. 2021 Apr 27; '''22''' (9):
Categorization of Orthologous Gene Clusters in 92 Ascomycota Genomes Reveals Functions Important for Phytopathogenicity. Description: Peterson, Daniel, et al. Categorization of Orthologous Gene Clusters in 92 Ascomycota Genomes Reveals Functions Important for Phytopathogenicity. ''J Fungi (Basel)''. 2021 Apr 27; '''7''' (5):
Ecophysiological Features Shape the Distribution of Prophages and CRISPR in Sulfate Reducing Prokaryotes. Description: Orellana, Roberto, et al. Ecophysiological Features Shape the Distribution of Prophages and CRISPR in Sulfate Reducing Prokaryotes. ''Microorganisms''. 2021 Apr 27; '''9''' (5):
Genome-Wide Analysis of the Late Embryogenesis Abundant (LEA) and Abscisic Acid-, Stress-, and Ripening-Induced (ASR) Gene Superfamily from Canavalia rosea and Their Roles in Salinity/Alkaline and Drought Tolerance. Description: Lin, Ruoyi, et al. Genome-Wide Analysis of the Late Embryogenesis Abundant (LEA) and Abscisic Acid-, Stress-, and Ripening-Induced (ASR) Gene Superfamily from Canavalia rosea and Their Roles in Salinity/Alkaline and Drought Tolerance. ''Int J Mol Sci''. 2021 Apr 27; '''22''' (9):
Virome Diversity among Mosquito Populations in a Sub-Urban Region of Marseille, France. Description: Nebbak, Amira, et al. Virome Diversity among Mosquito Populations in a Sub-Urban Region of Marseille, France. ''Viruses''. 2021 Apr 27; '''13''' (5):
Characterisation of the Viral Community Associated with the Alfalfa Weevil (Hypera postica) and Its Host Plant, Alfalfa (Medicago sativa). Description: Francois, Sarah, et al. Characterisation of the Viral Community Associated with the Alfalfa Weevil (Hypera postica) and Its Host Plant, Alfalfa (Medicago sativa). ''Viruses''. 2021 Apr 28; '''13''' (5):
Chromosome-scale assembly and analysis of biomass crop Miscanthus lutarioriparius genome. Description: Miao, Jiashun, et al. Chromosome-scale assembly and analysis of biomass crop Miscanthus lutarioriparius genome. ''Nat Commun''. 2021 Apr 28; '''12''' (1):2458
Differential expressions of anthocyanin synthesis genes underlie flower color divergence in a sympatric Rhododendron sanguineum complex. Description: Ye, Lin-Jiang, et al. Differential expressions of anthocyanin synthesis genes underlie flower color divergence in a sympatric Rhododendron sanguineum complex. ''BMC Plant Biol''. 2021 Apr 28; '''21''' (1):204
Proteomic Charting of Imipenem Adaptive Responses in a Highly Carbapenem Resistant Clinical Enterobacter roggenkampii Isolate. Description: Nepal, Suruchi, et al. Proteomic Charting of Imipenem Adaptive Responses in a Highly Carbapenem Resistant Clinical Enterobacter roggenkampii Isolate. ''Antibiotics (Basel)''. 2021 Apr 28; '''10''' (5):
Reductive evolution and unique predatory mode in the CPR bacterium Vampirococcus lugosii. Description: Moreira, David, et al. Reductive evolution and unique predatory mode in the CPR bacterium Vampirococcus lugosii. ''Nat Commun''. 2021 Apr 28; '''12''' (1):2454
Identification of a Novel Papillomavirus Type (MfoiPV1) Associated with Acrochordon in a Stone Marten (Martes foina). Description: Kuhar, Urska, et al. Identification of a Novel Papillomavirus Type (MfoiPV1) Associated with Acrochordon in a Stone Marten (Martes foina). ''Pathogens''. 2021 Apr 30; '''10''' (5):
CheckV assesses the quality and completeness of metagenome-assembled viral genomes. Description: Nayfach, Stephen, et al. CheckV assesses the quality and completeness of metagenome-assembled viral genomes. ''Nat Biotechnol''. 2021 May; '''39''' (5):578-585
Comparative genomics analysis of two banana Fusarium wilt biocontrol endophytes Bacillus subtilis R31 and TR21 provides insights into their differences on phytobeneficial trait. Description: Li, Chunji, et al. Comparative genomics analysis of two banana Fusarium wilt biocontrol endophytes Bacillus subtilis R31 and TR21 provides insights into their differences on phytobeneficial trait. ''Genomics''. 2021 May; '''113''' (3):900-909
Comparative transcriptome analyses for metribuzin tolerance provide insights into key genes and mechanisms restoring photosynthetic efficiency in bread wheat (Triticum aestivum L.). Description: Bhoite, Roopali, et al. Comparative transcriptome analyses for metribuzin tolerance provide insights into key genes and mechanisms restoring photosynthetic efficiency in bread wheat (Triticum aestivum L.). ''Genomics''. 2021 May; '''113''' (3):910-918
Cotton transcriptome analysis reveals novel biological pathways that eliminate reactive oxygen species (ROS) under sodium bicarbonate (NaHCO(3)) alkaline stress. Description: Fan, Yapeng, et al. Cotton transcriptome analysis reveals novel biological pathways that eliminate reactive oxygen species (ROS) under sodium bicarbonate (NaHCO(3)) alkaline stress. ''Genomics''. 2021 May; '''113''' (3):1157-1169
High-quality reference genome for Clonorchis sinensis. Description: Young, Neil D, et al. High-quality reference genome for Clonorchis sinensis. ''Genomics''. 2021 May; '''113''' (3):1605-1615
Microbial Key Players Involved in P Turnover Differ in Artificial Soil Mixtures Depending on Clay Mineral Composition. Description: Tanuwidjaja, Irina, et al. Microbial Key Players Involved in P Turnover Differ in Artificial Soil Mixtures Depending on Clay Mineral Composition. ''Microb Ecol''. 2021 May; '''81''' (4):897-907
Molecular detection of cosaviruses in a patient with acute flaccid paralysis and in sewage samples in Germany. Description: Schneider, J, et al. Molecular detection of cosaviruses in a patient with acute flaccid paralysis and in sewage samples in Germany. ''Virus Res''. 2021 May; '''297''': 198285
Multiomics analysis reveals the presence of a microbiome in the gut of fetal lambs. Description: Bi, Yanliang, et al. Multiomics analysis reveals the presence of a microbiome in the gut of fetal lambs. ''Gut''. 2021 May; '''70''' (5):853-864
Shotgun metagenomics reveals significant gut microbiome features in different grades of acute pancreatitis. Description: Yu, Shanshan, et al. Shotgun metagenomics reveals significant gut microbiome features in different grades of acute pancreatitis. ''Microb Pathog''. 2021 May; '''154''': 104849
Strongly preserved modules between cancer tissue and cell line contribute to drug resistance analysis across multiple cancer types. Description: Dong, Siyao, et al. Strongly preserved modules between cancer tissue and cell line contribute to drug resistance analysis across multiple cancer types. ''Genomics''. 2021 May; '''113''' (3):1026-1036
The macronuclear genome of anaerobic ciliate Entodinium caudatum reveals its biological features adapted to the distinct rumen environment. Description: Park, Tansol, et al. The macronuclear genome of anaerobic ciliate Entodinium caudatum reveals its biological features adapted to the distinct rumen environment. ''Genomics''. 2021 May; '''113''' (3):1416-1427
Dicopper(II)-EDTA Chelate as a Bicephalic Receptor Model for a Synthetic Adenine Nucleoside. Description: Garcia-Rubino, Maria Eugenia, et al. Dicopper(II)-EDTA Chelate as a Bicephalic Receptor Model for a Synthetic Adenine Nucleoside. ''Pharmaceuticals (Basel)''. 2021 May 2; '''14''' (5):
The Crown Pearl: a draft genome assembly of the European freshwater pearl mussel Margaritifera margaritifera (Linnaeus, 1758). Description: Gomes-Dos-Santos, Andre, et al. The Crown Pearl: a draft genome assembly of the European freshwater pearl mussel Margaritifera margaritifera (Linnaeus, 1758). ''DNA Res''. 2021 May 2; '''28''' (2):
Integrating taxonomic, functional, and strain-level profiling of diverse microbial communities with bioBakery 3. Description: Beghini, Francesco, et al. Integrating taxonomic, functional, and strain-level profiling of diverse microbial communities with bioBakery 3. ''Elife''. 2021 May 4; '''10''':
Linked by Ancestral Bonds: Multiple Whole-Genome Duplications and Reticulate Evolution in a Brassicaceae Tribe. Description: Guo, Xinyi, et al. Linked by Ancestral Bonds: Multiple Whole-Genome Duplications and Reticulate Evolution in a Brassicaceae Tribe. ''Mol Biol Evol''. 2021 May 4; '''38''' (5):1695-1714
Particulate Metabolites and Transcripts Reflect Diel Oscillations of Microbial Activity in the Surface Ocean. Description: Boysen, Angela K, et al. Particulate Metabolites and Transcripts Reflect Diel Oscillations of Microbial Activity in the Surface Ocean. ''mSystems''. 2021 May 4; '''6''' (3):
geneshot: gene-level metagenomics identifies genome islands associated with immunotherapy response. Description: Minot, Samuel S, et al. geneshot: gene-level metagenomics identifies genome islands associated with immunotherapy response. ''Genome Biol''. 2021 May 5; '''22''' (1):135
Gut microbiota in healthy and unhealthy long-living people. Description: Zhang, Siyuan, et al. Gut microbiota in healthy and unhealthy long-living people. ''Gene''. 2021 May 5; '''779''': 145510
HIV-1 Infection Alters the Viral Composition of Plasma in Men Who Have Sex with Men. Description: Liu, Kai, et al. HIV-1 Infection Alters the Viral Composition of Plasma in Men Who Have Sex with Men. ''mSphere''. 2021 May 5; '''6''' (3):
Transcriptional profile of oil palm pathogen, Ganoderma boninense, reveals activation of lignin degradation machinery and possible evasion of host immune response. Description: Dhillon, Braham, et al. Transcriptional profile of oil palm pathogen, Ganoderma boninense, reveals activation of lignin degradation machinery and possible evasion of host immune response. ''BMC Genomics''. 2021 May 5; '''22''' (1):326
Ketogenic diet-mediated steroid metabolism reprogramming improves the immune microenvironment and myelin growth in spinal cord injury rats according to gene and co-expression network analyses. Description: Zeng, Hong, et al. Ketogenic diet-mediated steroid metabolism reprogramming improves the immune microenvironment and myelin growth in spinal cord injury rats according to gene and co-expression network analyses. ''Aging (Albany NY)''. 2021 May 6; '''13''' (9):12973-12995
Analysis of differentially expressed Sclerotinia sclerotiorum genes during the interaction with moderately resistant and highly susceptible chickpea lines. Description: Mwape, Virginia W, et al. Analysis of differentially expressed Sclerotinia sclerotiorum genes during the interaction with moderately resistant and highly susceptible chickpea lines. ''BMC Genomics''. 2021 May 8; '''22''' (1):333
The microbiota of healthy dogs demonstrates individualized responses to synbiotic supplementation in a randomized controlled trial. Description: Tanprasertsuk, Jirayu, et al. The microbiota of healthy dogs demonstrates individualized responses to synbiotic supplementation in a randomized controlled trial. ''Anim Microbiome''. 2021 May 10; '''3''' (1):36
Freshwater Chlorobia Exhibit Metabolic Specialization among Cosmopolitan and Endemic Populations. Description: Garcia, Sarahi L, et al. Freshwater Chlorobia Exhibit Metabolic Specialization among Cosmopolitan and Endemic Populations. ''mSystems''. 2021 May 11; '''6''' (3):
Haplotype-resolved genome assembly enables gene discovery in the red palm weevil Rhynchophorus ferrugineus. Description: Dias, Guilherme B, et al. Haplotype-resolved genome assembly enables gene discovery in the red palm weevil Rhynchophorus ferrugineus. ''Sci Rep''. 2021 May 11; '''11''' (1):9987
Novel Mycoviruses Discovered in the Mycovirome of a Necrotrophic Fungus. Description: Ruiz-Padilla, Ana, et al. Novel Mycoviruses Discovered in the Mycovirome of a Necrotrophic Fungus. ''mBio''. 2021 May 11; '''12''' (3):
Potential and expression of carbohydrate utilization by marine fungi in the global ocean. Description: Baltar, Federico, et al. Potential and expression of carbohydrate utilization by marine fungi in the global ocean. ''Microbiome''. 2021 May 11; '''9''' (1):106
Prenatal Exposure And Child brain and mental Health (PEACH) study: protocol for a cohort study of children and youth with prenatal alcohol exposure. Description: Lebel, Catherine A, et al. Prenatal Exposure And Child brain and mental Health (PEACH) study: protocol for a cohort study of children and youth with prenatal alcohol exposure. ''BMJ Open''. 2021 May 11; '''11''' (5):e051660
Covariation of the Fecal Microbiome with Diet in Nonpasserine Birds. Description: Xiao, Kangpeng, et al. Covariation of the Fecal Microbiome with Diet in Nonpasserine Birds. ''mSphere''. 2021 May 12; '''6''' (3):
Microbial Hotspots in Lithic Microhabitats Inferred from DNA Fractionation and Metagenomics in the Atacama Desert. Description: Schulze-Makuch, Dirk, et al. Microbial Hotspots in Lithic Microhabitats Inferred from DNA Fractionation and Metagenomics in the Atacama Desert. ''Microorganisms''. 2021 May 12; '''9''' (5):
Dual RNA-Sequencing Analysis of Resistant (Pinus pinea) and Susceptible (Pinus radiata) Hosts during Fusarium circinatum Challenge. Description: Zamora-Ballesteros, Cristina, et al. Dual RNA-Sequencing Analysis of Resistant (Pinus pinea) and Susceptible (Pinus radiata) Hosts during Fusarium circinatum Challenge. ''Int J Mol Sci''. 2021 May 15; '''22''' (10):
The Crystal Structure and Intermolecular Interactions in Fenamic Acids-Acridine Complexes. Description: Krawczyk, Marta S, et al. The Crystal Structure and Intermolecular Interactions in Fenamic Acids-Acridine Complexes. ''Molecules''. 2021 May 16; '''26''' (10):
Bacteriophage-Host Association in the Phytoplasma Insect Vector Euscelidius variegatus. Description: Vallino, Marta, et al. Bacteriophage-Host Association in the Phytoplasma Insect Vector Euscelidius variegatus. ''Pathogens''. 2021 May 17; '''10''' (5):
Diverse Viruses Carrying Genes for Microbial Extremotolerance in the Atacama Desert Hyperarid Soil. Description: Hwang, Yunha, et al. Diverse Viruses Carrying Genes for Microbial Extremotolerance in the Atacama Desert Hyperarid Soil. ''mSystems''. 2021 May 18; '''6''' (3):
Early-Life Immune System Maturation in Chickens Using a Synthetic Community of Cultured Gut Bacteria. Description: Zenner, Christian, et al. Early-Life Immune System Maturation in Chickens Using a Synthetic Community of Cultured Gut Bacteria. ''mSystems''. 2021 May 18; '''6''' (3):
Gut microbiota of frugo-folivorous sifakas across environments. Description: Greene, Lydia K, et al. Gut microbiota of frugo-folivorous sifakas across environments. ''Anim Microbiome''. 2021 May 18; '''3''' (1):39
Propionate Fermentative Genes of the Gut Microbiome Decrease in Inflammatory Bowel Disease. Description: Medina, Juan Manuel, et al. Propionate Fermentative Genes of the Gut Microbiome Decrease in Inflammatory Bowel Disease. ''J Clin Med''. 2021 May 18; '''10''' (10):
The fecal microbiota of patients with pancreatic ductal adenocarcinoma and autoimmune pancreatitis characterized by metagenomic sequencing. Description: Zhou, Wenli, et al. The fecal microbiota of patients with pancreatic ductal adenocarcinoma and autoimmune pancreatitis characterized by metagenomic sequencing. ''J Transl Med''. 2021 May 18; '''19''' (1):215
Database-independent de novo metaproteomics of complex microbial communities. Description: Kleikamp, Hugo B C, et al. Database-independent de novo metaproteomics of complex microbial communities. ''Cell Syst''. 2021 May 19; '''12''' (5):375-383.e5
Mitonuclear Coevolution, but not Nuclear Compensation, Drives Evolution of OXPHOS Complexes in Bivalves. Description: Piccinini, Giovanni, et al. Mitonuclear Coevolution, but not Nuclear Compensation, Drives Evolution of OXPHOS Complexes in Bivalves. ''Mol Biol Evol''. 2021 May 19; '''38''' (6):2597-2614
The Mastigamoeba balamuthi Genome and the Nature of the Free-Living Ancestor of Entamoeba. Description: Zarsky, Vojtech, et al. The Mastigamoeba balamuthi Genome and the Nature of the Free-Living Ancestor of Entamoeba. ''Mol Biol Evol''. 2021 May 19; '''38''' (6):2240-2259
Transcriptomic Analysis for the Identification of Metabolic Pathway Genes Related to Toluene Response in Ardisia pusilla. Description: Xu, Junping, et al. Transcriptomic Analysis for the Identification of Metabolic Pathway Genes Related to Toluene Response in Ardisia pusilla. ''Plants (Basel)''. 2021 May 19; '''10''' (5):
Benchmarking orthology methods using phylogenetic patterns defined at the base of Eukaryotes. Description: Deutekom, Eva S, et al. Benchmarking orthology methods using phylogenetic patterns defined at the base of Eukaryotes. ''Brief Bioinform''. 2021 May 20; '''22''' (3):
Dynamic transcriptome and histomorphology analysis of developmental traits of hindlimb thigh muscle from Odorrana tormota and its adaptability to different life history stages. Description: Shu, Yilin, et al. Dynamic transcriptome and histomorphology analysis of developmental traits of hindlimb thigh muscle from Odorrana tormota and its adaptability to different life history stages. ''BMC Genomics''. 2021 May 20; '''22''' (1):369
Transcriptome Analysis Identifies a Gene Cluster for the Biosynthesis of Biruloquinone, a Rare Phenanthraquinone, in a Lichen-Forming Fungus Cladonia macilenta. Description: Kim, Wonyong, et al. Transcriptome Analysis Identifies a Gene Cluster for the Biosynthesis of Biruloquinone, a Rare Phenanthraquinone, in a Lichen-Forming Fungus Cladonia macilenta. ''J Fungi (Basel)''. 2021 May 20; '''7''' (5):
Enlightening the taxonomy darkness of human gut microbiomes with a cultured biobank. Description: Liu, Chang, et al. Enlightening the taxonomy darkness of human gut microbiomes with a cultured biobank. ''Microbiome''. 2021 May 21; '''9''' (1):119
Prophage Genomics and Ecology in the Family Rhodobacteraceae. Description: Forcone, Kathryn, et al. Prophage Genomics and Ecology in the Family Rhodobacteraceae. ''Microorganisms''. 2021 May 21; '''9''' (6):
Two high-quality de novo genomes from single ethanol-preserved specimens of tiny metazoans (Collembola). Description: Schneider, Clement, et al. Two high-quality de novo genomes from single ethanol-preserved specimens of tiny metazoans (Collembola). ''Gigascience''. 2021 May 21; '''10''' (5):
Genome analysis of Spiroplasma citri strains from different host plants and its leafhopper vectors. Description: Rattner, Rachel, et al. Genome analysis of Spiroplasma citri strains from different host plants and its leafhopper vectors. ''BMC Genomics''. 2021 May 22; '''22''' (1):373
Meanders as a scaling motif for understanding of floodplain soil microbiome and biogeochemical potential at the watershed scale. Description: Matheus Carnevali, Paula B, et al. Meanders as a scaling motif for understanding of floodplain soil microbiome and biogeochemical potential at the watershed scale. ''Microbiome''. 2021 May 22; '''9''' (1):121
MolluscDB: a genome and transcriptome database for molluscs. Description: Caurcel, Carlos, et al. MolluscDB: a genome and transcriptome database for molluscs. ''Philos Trans R Soc Lond B Biol Sci''. 2021 May 24; '''376''' (1825):20200157
Re-examination of two diatom reference genomes using long-read sequencing. Description: Filloramo, Gina V, et al. Re-examination of two diatom reference genomes using long-read sequencing. ''BMC Genomics''. 2021 May 24; '''22''' (1):379
Gut microbiome contributions to altered metabolism in a pig model of undernutrition. Description: Chang, Hao-Wei, et al. Gut microbiome contributions to altered metabolism in a pig model of undernutrition. ''Proc Natl Acad Sci U S A''. 2021 May 25; '''118''' (21):
Growth inhibition of Spodoptera frugiperda larvae by camptothecin correlates with alteration of the structures and gene expression profiles of the midgut. Description: Shu, Benshui, et al. Growth inhibition of Spodoptera frugiperda larvae by camptothecin correlates with alteration of the structures and gene expression profiles of the midgut. ''BMC Genomics''. 2021 May 26; '''22''' (1):391
Population transcriptomic sequencing reveals allopatric divergence and local adaptation in Pseudotaxus chienii (Taxaceae). Description: Liu, Li, et al. Population transcriptomic sequencing reveals allopatric divergence and local adaptation in Pseudotaxus chienii (Taxaceae). ''BMC Genomics''. 2021 May 26; '''22''' (1):388
A stony coral cell atlas illuminates the molecular and cellular basis of coral symbiosis, calcification, and immunity. Description: Levy, Shani, et al. A stony coral cell atlas illuminates the molecular and cellular basis of coral symbiosis, calcification, and immunity. ''Cell''. 2021 May 27; '''184''' (11):2973-2987.e18
Draft genome sequence of the pulse crop blackgram [Vigna mungo (L.) Hepper] reveals potential R-genes. Description: Jegadeesan, Souframanien, et al. Draft genome sequence of the pulse crop blackgram [Vigna mungo (L.) Hepper] reveals potential R-genes. ''Sci Rep''. 2021 May 27; '''11''' (1):11247
Identification of tick-borne pathogens by metagenomic next-generation sequencing in Dermacentor nuttalli and Ixodes persulcatus in Inner Mongolia, China. Description: Jiao, Jun, et al. Identification of tick-borne pathogens by metagenomic next-generation sequencing in Dermacentor nuttalli and Ixodes persulcatus in Inner Mongolia, China. ''Parasit Vectors''. 2021 May 27; '''14''' (1):287
Discovery and Characterization of Actively Replicating DNA and Retro-Transcribing Viruses in Lower Vertebrate Hosts Based on RNA Sequencing. Description: Chen, Xin-Xin, et al. Discovery and Characterization of Actively Replicating DNA and Retro-Transcribing Viruses in Lower Vertebrate Hosts Based on RNA Sequencing. ''Viruses''. 2021 May 31; '''13''' (6):
The effects of combined environmental factors on the intestinal flora of mice based on ground simulation experiments. Description: Sun, Peiming, et al. The effects of combined environmental factors on the intestinal flora of mice based on ground simulation experiments. ''Sci Rep''. 2021 May 31; '''11''' (1):11373
Balancing selection maintains hyper-divergent haplotypes in Caenorhabditis elegans. Description: Lee, Daehan, et al. Balancing selection maintains hyper-divergent haplotypes in Caenorhabditis elegans. ''Nat Ecol Evol''. 2021 Jun; '''5''' (6):794-807
Comparative genomics reveals a core gene toolbox for lifestyle transitions in Hypocreales fungi. Description: Wu, Baojun, et al. Comparative genomics reveals a core gene toolbox for lifestyle transitions in Hypocreales fungi. ''Environ Microbiol''. 2021 Jun; '''23''' (6):3251-3264
Comparative genomics reveals new functional insights in uncultured MAST species. Description: Labarre, Aurelie, et al. Comparative genomics reveals new functional insights in uncultured MAST species. ''ISME J''. 2021 Jun; '''15''' (6):1767-1781
Comparison of the composition and function of the gut microbiome in herdsmen from two pasture regions, Hongyuan and Xilingol. Description: Yang, Chengcong, et al. Comparison of the composition and function of the gut microbiome in herdsmen from two pasture regions, Hongyuan and Xilingol. ''Food Sci Nutr''. 2021 Jun; '''9''' (6):3258-3268
Genomic insights into the sessile life and biofouling of barnacles (Crustacea: Cirripedia). Description: Ip, Jack Chi-Ho, et al. Genomic insights into the sessile life and biofouling of barnacles (Crustacea: Cirripedia). ''Heliyon''. 2021 Jun; '''7''' (6):e07291
Newly discovered Asgard archaea Hermodarchaeota potentially degrade alkanes and aromatics via alkyl/benzyl-succinate synthase and benzoyl-CoA pathway. Description: Zhang, Jia-Wei, et al. Newly discovered Asgard archaea Hermodarchaeota potentially degrade alkanes and aromatics via alkyl/benzyl-succinate synthase and benzoyl-CoA pathway. ''ISME J''. 2021 Jun; '''15''' (6):1826-1843
Plasma P-selectin is a predictor of mortality in heart failure with preserved ejection fraction. Description: Kanagala, Prathap, et al. Plasma P-selectin is a predictor of mortality in heart failure with preserved ejection fraction. ''ESC Heart Fail''. 2021 Jun; '''8''' (3):2328-2333
Complete genome sequence of Arthrobacter sp. PAMC25564 and its comparative genome analysis for elucidating the role of CAZymes in cold adaptation. Description: Han, So-Ra, et al. Complete genome sequence of Arthrobacter sp. PAMC25564 and its comparative genome analysis for elucidating the role of CAZymes in cold adaptation. ''BMC Genomics''. 2021 Jun 2; '''22''' (1):403
Comparative analysis of mite genomes reveals positive selection for diet adaptation. Description: Liu, Qiong, et al. Comparative analysis of mite genomes reveals positive selection for diet adaptation. ''Commun Biol''. 2021 Jun 3; '''4''' (1):668
Transcriptome analysis provides insights into copper toxicology in piebald naked carp (Gymnocypris eckloni). Description: Jin, Wenjie, et al. Transcriptome analysis provides insights into copper toxicology in piebald naked carp (Gymnocypris eckloni). ''BMC Genomics''. 2021 Jun 5; '''22''' (1):416
Comparative Study of Metagenomics and Metatranscriptomics to Reveal Microbiomes in Overwintering Pepper Fruits. Description: Jo, Yeonhwa, et al. Comparative Study of Metagenomics and Metatranscriptomics to Reveal Microbiomes in Overwintering Pepper Fruits. ''Int J Mol Sci''. 2021 Jun 8; '''22''' (12):
Remodeling of N-Heterocyclic Iminato Ligand Frameworks for the Facile Synthesis of Isoureas from Alcohols and Carbodiimides Promoted by Organoactinide (Th, U) Complexes. Description: Makarov, Konstantin, et al. Remodeling of N-Heterocyclic Iminato Ligand Frameworks for the Facile Synthesis of Isoureas from Alcohols and Carbodiimides Promoted by Organoactinide (Th, U) Complexes. ''ACS Omega''. 2021 Jun 8; '''6''' (22):14692-14700
Characterization of nucleic acids from extracellular vesicle-enriched human sweat. Description: Bart, Genevieve, et al. Characterization of nucleic acids from extracellular vesicle-enriched human sweat. ''BMC Genomics''. 2021 Jun 9; '''22''' (1):425
Ecology of inorganic sulfur auxiliary metabolism in widespread bacteriophages. Description: Kieft, Kristopher, et al. Ecology of inorganic sulfur auxiliary metabolism in widespread bacteriophages. ''Nat Commun''. 2021 Jun 9; '''12''' (1):3503
Mitogenomics and Evolutionary History of Rodent Whipworms (Trichuris spp.) Originating from Three Biogeographic Regions. Description: Petruzela, Jan, et al. Mitogenomics and Evolutionary History of Rodent Whipworms (Trichuris spp.) Originating from Three Biogeographic Regions. ''Life (Basel)''. 2021 Jun 9; '''11''' (6):
Synthesis, structural characterization and antimycobacterial evaluation of several halogenated non-nitro benzothiazinones. Description: Madikizela, Balungile, et al. Synthesis, structural characterization and antimycobacterial evaluation of several halogenated non-nitro benzothiazinones. ''Med Chem Res''. 2021 Jun 10; 1-11
Evidence of Transcriptional Shutoff by Pathogenic Viral Haemorrhagic Septicaemia Virus in Rainbow Trout. Description: Cano, Irene, et al. Evidence of Transcriptional Shutoff by Pathogenic Viral Haemorrhagic Septicaemia Virus in Rainbow Trout. ''Viruses''. 2021 Jun 11; '''13''' (6):
Genome analysis to decipher syntrophy in the bacterial consortium 'SCP' for azo dye degradation. Description: Nanjani, Sandhya, et al. Genome analysis to decipher syntrophy in the bacterial consortium 'SCP' for azo dye degradation. ''BMC Microbiol''. 2021 Jun 11; '''21''' (1):177
An integrated gene catalog and over 10,000 metagenome-assembled genomes from the gastrointestinal microbiome of ruminants. Description: Xie, Fei, et al. An integrated gene catalog and over 10,000 metagenome-assembled genomes from the gastrointestinal microbiome of ruminants. ''Microbiome''. 2021 Jun 12; '''9''' (1):137
Indoor bacterial, fungal and viral species and functional genes in urban and rural schools in Shanxi Province, China-association with asthma, rhinitis and rhinoconjunctivitis in high school students. Description: Fu, Xi, et al. Indoor bacterial, fungal and viral species and functional genes in urban and rural schools in Shanxi Province, China-association with asthma, rhinitis and rhinoconjunctivitis in high school students. ''Microbiome''. 2021 Jun 12; '''9''' (1):138
Linking genomic and physiological characteristics of psychrophilic Arthrobacter to metagenomic data to explain global environmental distribution. Description: Shen, Liang, et al. Linking genomic and physiological characteristics of psychrophilic Arthrobacter to metagenomic data to explain global environmental distribution. ''Microbiome''. 2021 Jun 12; '''9''' (1):136
Global mRNA and miRNA Analysis Reveal Key Processes in the Initial Response to Infection with WSSV in the Pacific Whiteleg Shrimp. Description: Millard, Rebecca S, et al. Global mRNA and miRNA Analysis Reveal Key Processes in the Initial Response to Infection with WSSV in the Pacific Whiteleg Shrimp. ''Viruses''. 2021 Jun 13; '''13''' (6):
Concise Synthesis of Both Enantiomers of Pilocarpine. Description: Schmidt, Theresa, et al. Concise Synthesis of Both Enantiomers of Pilocarpine. ''Molecules''. 2021 Jun 16; '''26''' (12):
Dietary fiber intake, the gut microbiome, and chronic systemic inflammation in a cohort of adult men. Description: Ma, Wenjie, et al. Dietary fiber intake, the gut microbiome, and chronic systemic inflammation in a cohort of adult men. ''Genome Med''. 2021 Jun 17; '''13''' (1):102
Transcriptome Reveals Roles of Lignin-Modifying Enzymes and Abscisic Acid in the Symbiosis of Mycena and Gastrodia elata. Description: Ren, Li-Ying, et al. Transcriptome Reveals Roles of Lignin-Modifying Enzymes and Abscisic Acid in the Symbiosis of Mycena and Gastrodia elata. ''Int J Mol Sci''. 2021 Jun 18; '''22''' (12):
Microbiomes attached to fresh perennial ryegrass are temporally resilient and adapt to changing ecological niches. Description: Huws, Sharon A, et al. Microbiomes attached to fresh perennial ryegrass are temporally resilient and adapt to changing ecological niches. ''Microbiome''. 2021 Jun 21; '''9''' (1):143
Hydrogen Bonds, Topologies, Energy Frameworks and Solubilities of Five Sorafenib Salts. Description: Phan, Chiuyen, et al. Hydrogen Bonds, Topologies, Energy Frameworks and Solubilities of Five Sorafenib Salts. ''Int J Mol Sci''. 2021 Jun 22; '''22''' (13):
Complex Modes of Inheritance in Hereditary Red Blood Cell Disorders: A Case Series Study of 155 Patients. Description: Andolfo, Immacolata, et al. Complex Modes of Inheritance in Hereditary Red Blood Cell Disorders: A Case Series Study of 155 Patients. ''Genes (Basel)''. 2021 Jun 23; '''12''' (7):
A global metagenomic map of urban microbiomes and antimicrobial resistance. Description: Danko, David, et al. A global metagenomic map of urban microbiomes and antimicrobial resistance. ''Cell''. 2021 Jun 24; '''184''' (13):3376-3393.e17
A spinach genome assembly with remarkable completeness, and its use for rapid identification of candidate genes for agronomic traits. Description: Hirakawa, Hideki, et al. A spinach genome assembly with remarkable completeness, and its use for rapid identification of candidate genes for agronomic traits. ''DNA Res''. 2021 Jun 25; '''28''' (3):
A synbiotic intervention modulates meta-omics signatures of gut redox potential and acidity in elective caesarean born infants. Description: Lay, Christophe, et al. A synbiotic intervention modulates meta-omics signatures of gut redox potential and acidity in elective caesarean born infants. ''BMC Microbiol''. 2021 Jun 25; '''21''' (1):191
Characterization and complexity of transcriptome in Gymnocypris przewalskii using single-molecule long-read sequencing and RNA-seq. Description: Li, Xindan, et al. Characterization and complexity of transcriptome in Gymnocypris przewalskii using single-molecule long-read sequencing and RNA-seq. ''DNA Res''. 2021 Jun 25; '''28''' (3):
Depletion of acetate-producing bacteria from the gut microbiota facilitates cognitive impairment through the gut-brain neural mechanism in diabetic mice. Description: Zheng, Hong, et al. Depletion of acetate-producing bacteria from the gut microbiota facilitates cognitive impairment through the gut-brain neural mechanism in diabetic mice. ''Microbiome''. 2021 Jun 25; '''9''' (1):145
Predicting Lifestyle from Positive Selection Data and Genome Properties in Oomycetes. Description: Gomez-Perez, Daniel, et al. Predicting Lifestyle from Positive Selection Data and Genome Properties in Oomycetes. ''Pathogens''. 2021 Jun 25; '''10''' (7):
Characterization of the Blood and Cerebrospinal Fluid Microbiome in Children with Bacterial Meningitis and Its Potential Correlation with Inflammation. Description: Liao, Huiping, et al. Characterization of the Blood and Cerebrospinal Fluid Microbiome in Children with Bacterial Meningitis and Its Potential Correlation with Inflammation. ''mSystems''. 2021 Jun 29; '''6''' (3):e0004921
Genomic and Phenotypic Evolution of Achromobacter xylosoxidans during Chronic Airway Infections of Patients with Cystic Fibrosis. Description: Khademi, S M Hossein, et al. Genomic and Phenotypic Evolution of Achromobacter xylosoxidans during Chronic Airway Infections of Patients with Cystic Fibrosis. ''mSystems''. 2021 Jun 29; e0052321
Integrated Multi-omics Investigations Reveal the Key Role of Synergistic Microbial Networks in Removing Plasticizer Di-(2-Ethylhexyl) Phthalate from Estuarine Sediments. Description: Wei, Sean Ting-Shyang, et al. Integrated Multi-omics Investigations Reveal the Key Role of Synergistic Microbial Networks in Removing Plasticizer Di-(2-Ethylhexyl) Phthalate from Estuarine Sediments. ''mSystems''. 2021 Jun 29; '''6''' (3):e0035821
Revealing the Viral Community in the Hadal Sediment of the New Britain Trench. Description: Zhou, Hui, et al. Revealing the Viral Community in the Hadal Sediment of the New Britain Trench. ''Genes (Basel)''. 2021 Jun 29; '''12''' (7):
The Termite Fungal Cultivar Termitomyces Combines Diverse Enzymes and Oxidative Reactions for Plant Biomass Conversion. Description: Schalk, Felix, et al. The Termite Fungal Cultivar Termitomyces Combines Diverse Enzymes and Oxidative Reactions for Plant Biomass Conversion. ''mBio''. 2021 Jun 29; '''12''' (3):e0355120
VB12Path for Accurate Metagenomic Profiling of Microbially Driven Cobalamin Synthesis Pathways. Description: Zhou, Jiayin, et al. VB12Path for Accurate Metagenomic Profiling of Microbially Driven Cobalamin Synthesis Pathways. ''mSystems''. 2021 Jun 29; '''6''' (3):e0049721
Viral Metagenome-Based Precision Surveillance of Pig Population at Large Scale Reveals Viromic Signatures of Sample Types and Influence of Farming Management on Pig Virome. Description: He, Biao, et al. Viral Metagenome-Based Precision Surveillance of Pig Population at Large Scale Reveals Viromic Signatures of Sample Types and Influence of Farming Management on Pig Virome. ''mSystems''. 2021 Jun 29; '''6''' (3):e0042021
Combined prenatal Lactobacillus reuteri and omega-3 supplementation synergistically modulates DNA methylation in neonatal T helper cells. Description: Huoman, Johanna, et al. Combined prenatal Lactobacillus reuteri and omega-3 supplementation synergistically modulates DNA methylation in neonatal T helper cells. ''Clin Epigenetics''. 2021 Jun 30; '''13''' (1):135
Genome-Wide Identification, Structure Characterization, Expression Pattern Profiling, and Substrate Specificity of the Metal Tolerance Protein Family in Canavalia rosea (Sw.) DC. Description: Zou, Tao, et al. Genome-Wide Identification, Structure Characterization, Expression Pattern Profiling, and Substrate Specificity of the Metal Tolerance Protein Family in Canavalia rosea (Sw.) DC. ''Plants (Basel)''. 2021 Jun 30; '''10''' (7):
Achromobacter spp. genetic adaptation in cystic fibrosis. Description: Gabrielaite, Migle, et al. Achromobacter spp. genetic adaptation in cystic fibrosis. ''Microb Genom''. 2021 Jul; '''7''' (7):
A methylotrophic origin of methanogenesis and early divergence of anaerobic multicarbon alkane metabolism. Description: Wang, Yinzhao, et al. A methylotrophic origin of methanogenesis and early divergence of anaerobic multicarbon alkane metabolism. ''Sci Adv''. 2021 Jul; '''7''' (27):
Cigarette smoking status alters dysbiotic gut microbes in hypertensive patients. Description: Wang, Pan, et al. Cigarette smoking status alters dysbiotic gut microbes in hypertensive patients. ''J Clin Hypertens (Greenwich)''. 2021 Jul; '''23''' (7):1431-1446
Genome mapping coupled with CRISPR gene editing reveals a P450 gene confers avermectin resistance in the beet armyworm. Description: Zuo, Yayun, et al. Genome mapping coupled with CRISPR gene editing reveals a P450 gene confers avermectin resistance in the beet armyworm. ''PLoS Genet''. 2021 Jul; '''17''' (7):e1009680
Genomic Diversity of CRESS DNA Viruses in the Eukaryotic Virome of Swine Feces. Description: Feher, Eniko, et al. Genomic Diversity of CRESS DNA Viruses in the Eukaryotic Virome of Swine Feces. ''Microorganisms''. 2021 Jul 1; '''9''' (7):
Gentamicin-induced hearing loss: A retrospective study using the Food and Drug Administration Adverse Event Reporting System and a toxicological study using drug-gene network analysis. Description: Tanaka, Mizuki, et al. Gentamicin-induced hearing loss: A retrospective study using the Food and Drug Administration Adverse Event Reporting System and a toxicological study using drug-gene network analysis. ''Heliyon''. 2021 Jul; '''7''' (7):e07429
Global homogenization of the structure and function in the soil microbiome of urban greenspaces. Description: Delgado-Baquerizo, Manuel, et al. Global homogenization of the structure and function in the soil microbiome of urban greenspaces. ''Sci Adv''. 2021 Jul; '''7''' (28):
Metagenomic compendium of 189,680 DNA viruses from the human gut microbiome. Description: Nayfach, Stephen, et al. Metagenomic compendium of 189,680 DNA viruses from the human gut microbiome. ''Nat Microbiol''. 2021 Jul; '''6''' (7):960-970
Metagenomics analysis revealed the distinctive ruminal microbiome and resistive profiles in dairy buffaloes. Description: Sun, Hui-Zeng, et al. Metagenomics analysis revealed the distinctive ruminal microbiome and resistive profiles in dairy buffaloes. ''Anim Microbiome''. 2021 Jul 1; '''3''' (1):44
Probiotics Lactobacillus rhamnosus GG ATCC53103 and Lactobacillus plantarum JL01 induce cytokine alterations by the production of TCDA, DHA, and succinic and palmitic acids, and enhance immunity of weaned piglets. Description: Geng, Tingting, et al. Probiotics Lactobacillus rhamnosus GG ATCC53103 and Lactobacillus plantarum JL01 induce cytokine alterations by the production of TCDA, DHA, and succinic and palmitic acids, and enhance immunity of weaned piglets. ''Res Vet Sci''. 2021 Jul; '''137''': 56-67
Transcriptome landscapes of multiple tissues highlight the genes involved in the flavor metabolic pathway in Chinese chive (Allium tuberosum). Description: Liu, Ning, et al. Transcriptome landscapes of multiple tissues highlight the genes involved in the flavor metabolic pathway in Chinese chive (Allium tuberosum). ''Genomics''. 2021 Jul; '''113''' (4):2145-2157
Viscoelastically tunable substrates elucidate the interface-relaxation-dependent adhesion and assembly behaviors of epithelial cells. Description: Chang, Alice Chinghsuan, et al. Viscoelastically tunable substrates elucidate the interface-relaxation-dependent adhesion and assembly behaviors of epithelial cells. ''Biomaterials''. 2021 Jul; '''274''': 120861
Fishing for the Virome of Tropical Tuna. Description: Gadoin, Elsa, et al. Fishing for the Virome of Tropical Tuna. ''Viruses''. 2021 Jul 2; '''13''' (7):
pLannotate: engineered plasmid annotation. Description: McGuffie, Matthew J, et al. pLannotate: engineered plasmid annotation. ''Nucleic Acids Res''. 2021 Jul 2; '''49''' (W1):W516-W522
The gutSMASH web server: automated identification of primary metabolic gene clusters from the gut microbiota. Description: Pascal Andreu, Victoria, et al. The gutSMASH web server: automated identification of primary metabolic gene clusters from the gut microbiota. ''Nucleic Acids Res''. 2021 Jul 2; '''49''' (W1):W263-W270
Whole genome analysis of Aichivirus A, isolated from a child, suffering from gastroenteritis, in Pakistan. Description: Sadiq, Asma, et al. Whole genome analysis of Aichivirus A, isolated from a child, suffering from gastroenteritis, in Pakistan. ''Virus Res''. 2021 Jul 2; '''299''': 198437
Genome Assembly of the Cold-Tolerant Leaf Beetle Gonioctena quinquepunctata, an Important Resource for Studying Its Evolution and Reproductive Barriers between Species. Description: Lukicheva, Svitlana, et al. Genome Assembly of the Cold-Tolerant Leaf Beetle Gonioctena quinquepunctata, an Important Resource for Studying Its Evolution and Reproductive Barriers between Species. ''Genome Biol Evol''. 2021 Jul 6; '''13''' (7):
Synthesis and Structure of Novel Copper(II) Complexes with N,O- or N,N-Donors as Radical Scavengers and a Functional Model of the Active Sites in Metalloenzymes. Description: Masternak, Joanna, et al. Synthesis and Structure of Novel Copper(II) Complexes with N,O- or N,N-Donors as Radical Scavengers and a Functional Model of the Active Sites in Metalloenzymes. ''Int J Mol Sci''. 2021 Jul 6; '''22''' (14):
PZLAST: an ultra-fast amino acid sequence similarity search server against public metagenomes. Description: Mori, Hiroshi, et al. PZLAST: an ultra-fast amino acid sequence similarity search server against public metagenomes. ''Bioinformatics''. 2021 Jul 7;
Dual species dynamic transcripts reveal the interaction mechanisms between Chrysanthemum morifolium and Alternaria alternata. Description: Liu, Lina, et al. Dual species dynamic transcripts reveal the interaction mechanisms between Chrysanthemum morifolium and Alternaria alternata. ''BMC Genomics''. 2021 Jul 9; '''22''' (1):523
RaFAH: Host prediction for viruses of Bacteria and Archaea based on protein content. Description: Coutinho, Felipe Hernandes, et al. RaFAH: Host prediction for viruses of Bacteria and Archaea based on protein content. ''Patterns (N Y)''. 2021 Jul 9; '''2''' (7):100274
Successful Dissemination of Plasmid-Mediated Extended-Spectrum beta-Lactamases in Enterobacterales over Humans to Wild Fauna. Description: Beyrouthy, Racha, et al. Successful Dissemination of Plasmid-Mediated Extended-Spectrum beta-Lactamases in Enterobacterales over Humans to Wild Fauna. ''Microorganisms''. 2021 Jul 9; '''9''' (7):
Sustained In Vitro and In Vivo Delivery of Metformin from Plant Pollen-Derived Composite Microcapsules. Description: Meligi, Noha M, et al. Sustained In Vitro and In Vivo Delivery of Metformin from Plant Pollen-Derived Composite Microcapsules. ''Pharmaceutics''. 2021 Jul 9; '''13''' (7):
Bacteriophage classification for assembled contigs using graph convolutional network. Description: Shang, Jiayu, et al. Bacteriophage classification for assembled contigs using graph convolutional network. ''Bioinformatics''. 2021 Jul 12; '''37''' (Suppl_1):i25-i33
Genome-wide identification and expression analysis of aquaporin family in Canavalia rosea and their roles in the adaptation to saline-alkaline soils and drought stress. Description: Lin, Ruoyi, et al. Genome-wide identification and expression analysis of aquaporin family in Canavalia rosea and their roles in the adaptation to saline-alkaline soils and drought stress. ''BMC Plant Biol''. 2021 Jul 13; '''21''' (1):333
Dispersal strategies shape persistence and evolution of human gut bacteria. Description: Hildebrand, Falk, et al. Dispersal strategies shape persistence and evolution of human gut bacteria. ''Cell Host Microbe''. 2021 Jul 14; '''29''' (7):1167-1176.e9
Flash glucose monitoring with the FreeStyle Libre 2 compared with self-monitoring of blood glucose in suboptimally controlled type 1 diabetes: the FLASH-UK randomised controlled trial protocol. Description: Wilmot, Emma G, et al. Flash glucose monitoring with the FreeStyle Libre 2 compared with self-monitoring of blood glucose in suboptimally controlled type 1 diabetes: the FLASH-UK randomised controlled trial protocol. ''BMJ Open''. 2021 Jul 14; '''11''' (7):e050713
Mating-Type Locus Organization and Mating-Type Chromosome Differentiation in the Bipolar Edible Button Mushroom Agaricus bisporus. Description: Foulongne-Oriol, Marie, et al. Mating-Type Locus Organization and Mating-Type Chromosome Differentiation in the Bipolar Edible Button Mushroom Agaricus bisporus. ''Genes (Basel)''. 2021 Jul 16; '''12''' (7):
Towards omics-based predictions of planktonic functional composition from environmental data. Description: Faure, Emile, et al. Towards omics-based predictions of planktonic functional composition from environmental data. ''Nat Commun''. 2021 Jul 16; '''12''' (1):4361
Proteo-Trancriptomic Analyses Reveal a Large Expansion of Metalloprotease-Like Proteins in Atypical Venom Vesicles of the Wasp Meteorus pulchricornis (Braconidae). Description: Gatti, Jean-Luc, et al. Proteo-Trancriptomic Analyses Reveal a Large Expansion of Metalloprotease-Like Proteins in Atypical Venom Vesicles of the Wasp Meteorus pulchricornis (Braconidae). ''Toxins (Basel)''. 2021 Jul 19; '''13''' (7):
Evaluation of Antiproliferative Palladium(II) Complexes of Synthetic Bisdemethoxycurcumin towards In Vitro Cytotoxicity and Molecular Docking on DNA Sequence. Description: Miklasova, Natalia, et al. Evaluation of Antiproliferative Palladium(II) Complexes of Synthetic Bisdemethoxycurcumin towards In Vitro Cytotoxicity and Molecular Docking on DNA Sequence. ''Molecules''. 2021 Jul 20; '''26''' (14):
Responses of Coastal Marine Microbiomes Exposed to Anthropogenic Dissolved Organic Carbon. Description: Cerro-Galvez, Elena, et al. Responses of Coastal Marine Microbiomes Exposed to Anthropogenic Dissolved Organic Carbon. ''Environ Sci Technol''. 2021 Jul 20; '''55''' (14):9609-9621
Next-Generation Sequencing Analysis of the Tineola bisselliella Larval Gut Transcriptome Reveals Candidate Enzymes for Keratin Digestion. Description: Schwabe, Michael, et al. Next-Generation Sequencing Analysis of the Tineola bisselliella Larval Gut Transcriptome Reveals Candidate Enzymes for Keratin Digestion. ''Genes (Basel)''. 2021 Jul 22; '''12''' (8):
Chironomus ramosus Larval Microbiome Composition Provides Evidence for the Presence of Detoxifying Enzymes. Description: Sela, Rotem, et al. Chironomus ramosus Larval Microbiome Composition Provides Evidence for the Presence of Detoxifying Enzymes. ''Microorganisms''. 2021 Jul 23; '''9''' (8):
Comparative genome and transcriptome analyses reveal innate differences in response to host plants by two color forms of the two-spotted spider mite Tetranychus urticae. Description: Huo, Shi-Mei, et al. Comparative genome and transcriptome analyses reveal innate differences in response to host plants by two color forms of the two-spotted spider mite Tetranychus urticae. ''BMC Genomics''. 2021 Jul 23; '''22''' (1):569
Genome and Secretome Analysis of Staphylotrichum longicolleum DSM105789 Cultured on Agro-Residual and Chitinous Biomass. Description: Ali, Arslan, et al. Genome and Secretome Analysis of Staphylotrichum longicolleum DSM105789 Cultured on Agro-Residual and Chitinous Biomass. ''Microorganisms''. 2021 Jul 25; '''9''' (8):
Integrated Phenotypic-Genotypic Analysis of Latilactobacillus sakei from Different Niches. Description: Chen, Ying, et al. Integrated Phenotypic-Genotypic Analysis of Latilactobacillus sakei from Different Niches. ''Foods''. 2021 Jul 25; '''10''' (8):
Oligosaccharide Metabolism and Lipoteichoic Acid Production in Lactobacillus gasseri and Lactobacillus paragasseri. Description: Shiraishi, Tsukasa, et al. Oligosaccharide Metabolism and Lipoteichoic Acid Production in Lactobacillus gasseri and Lactobacillus paragasseri. ''Microorganisms''. 2021 Jul 26; '''9''' (8):
PON-Sol2: Prediction of Effects of Variants on Protein Solubility. Description: Yang, Yang, et al. PON-Sol2: Prediction of Effects of Variants on Protein Solubility. ''Int J Mol Sci''. 2021 Jul 27; '''22''' (15):
DNA methylation profiling in mummified human remains from the eighteenth-century. Description: Schmidt, Marco, et al. DNA methylation profiling in mummified human remains from the eighteenth-century. ''Sci Rep''. 2021 Jul 29; '''11''' (1):15493
Interaction of Adenosine, Modified Using Carborane Clusters, with Ovarian Cancer Cells: A New Anticancer Approach against Chemoresistance. Description: Bednarska-Szczepaniak, Katarzyna, et al. Interaction of Adenosine, Modified Using Carborane Clusters, with Ovarian Cancer Cells: A New Anticancer Approach against Chemoresistance. ''Cancers (Basel)''. 2021 Jul 30; '''13''' (15):
Lytic archaeal viruses infect abundant primary producers in Earth's crust. Description: Rahlff, Janina, et al. Lytic archaeal viruses infect abundant primary producers in Earth's crust. ''Nat Commun''. 2021 Jul 30; '''12''' (1):4642
Structural and Functional Genomics of the Resistance of Cacao to Phytophthora palmivora. Description: Mucherino Munoz, Jonathan Javier, et al. Structural and Functional Genomics of the Resistance of Cacao to Phytophthora palmivora. ''Pathogens''. 2021 Jul 30; '''10''' (8):
Consuming Different Structural Parts of Bamboo Induce Gut Microbiome Changes in Captive Giant Pandas. Description: Yan, Zheng, et al. Consuming Different Structural Parts of Bamboo Induce Gut Microbiome Changes in Captive Giant Pandas. ''Curr Microbiol''. 2021 Aug; '''78''' (8):2998-3009
Deep sea sediments associated with cold seeps are a subsurface reservoir of viral diversity. Description: Li, Zexin, et al. Deep sea sediments associated with cold seeps are a subsurface reservoir of viral diversity. ''ISME J''. 2021 Aug; '''15''' (8):2366-2378
De novo transcriptome assembly of the Southern Ocean copepod Rhincalanus gigas sheds light on developmental changes in gene expression. Description: Berger, Cory A, et al. De novo transcriptome assembly of the Southern Ocean copepod Rhincalanus gigas sheds light on developmental changes in gene expression. ''Mar Genomics''. 2021 Aug; '''58''': 100835
Fine-scale metabolic discontinuity in a stratified prokaryote microbiome of a Red Sea deep halocline. Description: Michoud, Gregoire, et al. Fine-scale metabolic discontinuity in a stratified prokaryote microbiome of a Red Sea deep halocline. ''ISME J''. 2021 Aug; '''15''' (8):2351-2365
Genomics of Ochrobactrum pseudogrignonense (newly named Brucella pseudogrignonensis) reveals a new bla OXA subgroup. Description: Li, Shu-Yuan, et al. Genomics of Ochrobactrum pseudogrignonense (newly named Brucella pseudogrignonensis) reveals a new bla OXA subgroup. ''Microb Genom''. 2021 Aug; '''7''' (8):
Haustorium formation and a distinct biotrophic transcriptome characterize infection of Nicotiana benthamiana by the tree pathogen Phytophthora kernoviae. Description: Wang, Shumei, et al. Haustorium formation and a distinct biotrophic transcriptome characterize infection of Nicotiana benthamiana by the tree pathogen Phytophthora kernoviae. ''Mol Plant Pathol''. 2021 Aug; '''22''' (8):954-968
Long-term, Prolonged-release Tacrolimus-based Immunosuppression in De Novo Liver Transplant Recipients: 5-year Prospective Follow-up of Patients in the DIAMOND Study. Description: Friman, Styrbjorn, et al. Long-term, Prolonged-release Tacrolimus-based Immunosuppression in De Novo Liver Transplant Recipients: 5-year Prospective Follow-up of Patients in the DIAMOND Study. ''Transplant Direct''. 2021 Aug; '''7''' (8):e722
Micropathogen community identification in ticks (Acari: Ixodidae) using third-generation sequencing. Description: Luo, Jin, et al. Micropathogen community identification in ticks (Acari: Ixodidae) using third-generation sequencing. ''Int J Parasitol Parasites Wildl''. 2021 Aug; '''15''': 238-248
PhyloFisher: A phylogenomic package for resolving eukaryotic relationships. Description: Tice, Alexander K, et al. PhyloFisher: A phylogenomic package for resolving eukaryotic relationships. ''PLoS Biol''. 2021 Aug; '''19''' (8):e3001365
Phylum barrier and Escherichia coli intra-species phylogeny drive the acquisition of antibiotic-resistance genes. Description: Petitjean, Marie, et al. Phylum barrier and Escherichia coli intra-species phylogeny drive the acquisition of antibiotic-resistance genes. ''Microb Genom''. 2021 Aug; '''7''' (8):
Renal haemodynamic response to sodium-glucose cotransporter-2 inhibition does not depend on protein intake: An analysis of three randomized controlled trials. Description: van der Aart-van der Beek, Annemarie B, et al. Renal haemodynamic response to sodium-glucose cotransporter-2 inhibition does not depend on protein intake: An analysis of three randomized controlled trials. ''Diabetes Obes Metab''. 2021 Aug; '''23''' (8):1961-1967
Revealing the role of Plant Growth Promoting Rhizobacteria in suppressive soils against Fusarium oxysporum f.sp. cubense based on metagenomic analysis. Description: Nisrina, Lulu', et al. Revealing the role of Plant Growth Promoting Rhizobacteria in suppressive soils against Fusarium oxysporum f.sp. cubense based on metagenomic analysis. ''Heliyon''. 2021 Aug; '''7''' (8):e07636
The occurrence of antibiotic resistance genes in the microbiota of yak, beef and dairy cattle characterized by a metagenomic approach. Description: Wang, Weiwei, et al. The occurrence of antibiotic resistance genes in the microbiota of yak, beef and dairy cattle characterized by a metagenomic approach. ''J Antibiot (Tokyo)''. 2021 Aug; '''74''' (8):508-518
The roles of borderline personality disorder symptoms and dispositional capability for suicide in suicidal ideation and suicide attempts: Examination of the COMT Val158Met polymorphism. Description: Tull, Matthew T, et al. The roles of borderline personality disorder symptoms and dispositional capability for suicide in suicidal ideation and suicide attempts: Examination of the COMT Val158Met polymorphism. ''Psychiatry Res''. 2021 Aug; '''302''': 114011
Transcriptomic response of Daphnia magna to nitrogen- or phosphorus-limited diet. Description: Xu, Zhimeng, et al. Transcriptomic response of Daphnia magna to nitrogen- or phosphorus-limited diet. ''Ecol Evol''. 2021 Aug; '''11''' (16):11009-11019
Sequencing and de Novo Assembly of Abaca (Musa textilis Nee) var. Abuab Genome. Description: Galvez, Leny Calano, et al. Sequencing and de Novo Assembly of Abaca (Musa textilis Nee) var. Abuab Genome. ''Genes (Basel)''. 2021 Aug 2; '''12''' (8):
A Chromosome-Level Genome Assembly of Ephestia elutella (Hubner, 1796) (Lepidoptera: Pyralidae). Description: Yan, Bin, et al. A Chromosome-Level Genome Assembly of Ephestia elutella (Hubner, 1796) (Lepidoptera: Pyralidae). ''Genome Biol Evol''. 2021 Aug 3; '''13''' (8):
The Evolution of Interdependence in a Four-Way Mealybug Symbiosis. Description: Garber, Arkadiy I, et al. The Evolution of Interdependence in a Four-Way Mealybug Symbiosis. ''Genome Biol Evol''. 2021 Aug 3; '''13''' (8):
The Genome of the Haptophyte Diacronema lutheri (Pavlova lutheri, Pavlovales): A Model for Lipid Biosynthesis in Eukaryotic Algae. Description: Hulatt, Chris J, et al. The Genome of the Haptophyte Diacronema lutheri (Pavlova lutheri, Pavlovales): A Model for Lipid Biosynthesis in Eukaryotic Algae. ''Genome Biol Evol''. 2021 Aug 3; '''13''' (8):
Increased abundance of secreted hydrolytic enzymes and secondary metabolite gene clusters define the genomes of latent plant pathogens in the Botryosphaeriaceae. Description: Nagel, Jan H, et al. Increased abundance of secreted hydrolytic enzymes and secondary metabolite gene clusters define the genomes of latent plant pathogens in the Botryosphaeriaceae. ''BMC Genomics''. 2021 Aug 4; '''22''' (1):589
Antimicrobial susceptibilities and comparative whole genome analysis of two isolates of the probiotic bacterium Lactiplantibacillus plantarum, strain ATCC 202195. Description: Pell, Lisa G, et al. Antimicrobial susceptibilities and comparative whole genome analysis of two isolates of the probiotic bacterium Lactiplantibacillus plantarum, strain ATCC 202195. ''Sci Rep''. 2021 Aug 5; '''11''' (1):15893
Premature neonatal gut microbial community patterns supporting an epithelial TLR-mediated pathway for necrotizing enterocolitis. Description: Shaw, Alexander G, et al. Premature neonatal gut microbial community patterns supporting an epithelial TLR-mediated pathway for necrotizing enterocolitis. ''BMC Microbiol''. 2021 Aug 6; '''21''' (1):225
A Genomic and Transcriptomic Study on the DDT-Resistant Trichoderma hamatum FBL 587: First Genetic Data into Mycoremediation Strategies for DDT-Polluted Sites. Description: Davolos, Domenico, et al. A Genomic and Transcriptomic Study on the DDT-Resistant Trichoderma hamatum FBL 587: First Genetic Data into Mycoremediation Strategies for DDT-Polluted Sites. ''Microorganisms''. 2021 Aug 7; '''9''' (8):
A novel framework integrating AI model and enzymological experiments promotes identification of SARS-CoV-2 3CL protease inhibitors and activity-based probe. Description: Hu, Fan, et al. A novel framework integrating AI model and enzymological experiments promotes identification of SARS-CoV-2 3CL protease inhibitors and activity-based probe. ''Brief Bioinform''. 2021 Aug 9;
Genomic characterization of three marine fungi, including Emericellopsis atlantica sp. nov. with signatures of a generalist lifestyle and marine biomass degradation. Description: Hagestad, Ole Christian, et al. Genomic characterization of three marine fungi, including Emericellopsis atlantica sp. nov. with signatures of a generalist lifestyle and marine biomass degradation. ''IMA Fungus''. 2021 Aug 9; '''12''' (1):21
Conversion of dietary inositol into propionate and acetate by commensal Anaerostipes associates with host health. Description: Bui, Thi Phuong Nam, et al. Conversion of dietary inositol into propionate and acetate by commensal Anaerostipes associates with host health. ''Nat Commun''. 2021 Aug 10; '''12''' (1):4798
Elucidation of an anaerobic pathway for metabolism of l-carnitine-derived gamma-butyrobetaine to trimethylamine in human gut bacteria. Description: Rajakovich, Lauren J, et al. Elucidation of an anaerobic pathway for metabolism of l-carnitine-derived gamma-butyrobetaine to trimethylamine in human gut bacteria. ''Proc Natl Acad Sci U S A''. 2021 Aug 10; '''118''' (32):
High-Energy Mechanical Milling-Driven Reamorphization in Glassy Arsenic Monoselenide: On the Path of Tailoring Special Molecular-Network Glasses. Description: Shpotyuk, Yaroslav, et al. High-Energy Mechanical Milling-Driven Reamorphization in Glassy Arsenic Monoselenide: On the Path of Tailoring Special Molecular-Network Glasses. ''Materials (Basel)''. 2021 Aug 10; '''14''' (16):
Bog ecosystems as a playground for plant-microbe coevolution: bryophytes and vascular plants harbour functionally adapted bacteria. Description: Wicaksono, Wisnu Adi, et al. Bog ecosystems as a playground for plant-microbe coevolution: bryophytes and vascular plants harbour functionally adapted bacteria. ''Microbiome''. 2021 Aug 11; '''9''' (1):170
De Novo Transcriptome Assembly, Functional Annotation and SSR Marker Discovery of Qinling Takin (Budorcas taxicolor bedfordi). Description: Qiu, Ju, et al. De Novo Transcriptome Assembly, Functional Annotation and SSR Marker Discovery of Qinling Takin (Budorcas taxicolor bedfordi). ''Animals (Basel)''. 2021 Aug 11; '''11''' (8):
Solvatomorphism of Moxidectin. Description: Grell, Toni, et al. Solvatomorphism of Moxidectin. ''Molecules''. 2021 Aug 11; '''26''' (16):
Comparative transcriptomics provides a strategy for phylogenetic analysis and SSR marker development in Chaenomeles. Description: Shao, Wenhao, et al. Comparative transcriptomics provides a strategy for phylogenetic analysis and SSR marker development in Chaenomeles. ''Sci Rep''. 2021 Aug 12; '''11''' (1):16441
Sleeping for two: study protocol for a randomized controlled trial of cognitive behavioral therapy for insomnia in pregnant women. Description: MacKinnon, Anna L, et al. Sleeping for two: study protocol for a randomized controlled trial of cognitive behavioral therapy for insomnia in pregnant women. ''Trials''. 2021 Aug 12; '''22''' (1):532
Comparison of gene expression in the red imported fire ant (Solenopsis invicta) under different temperature conditions. Description: Vatanparast, Mohammad, et al. Comparison of gene expression in the red imported fire ant (Solenopsis invicta) under different temperature conditions. ''Sci Rep''. 2021 Aug 13; '''11''' (1):16476
Genetic and phenotypic analysis of the pathogenic potential of two novel Chlamydia gallinacea strains compared to Chlamydia psittaci. Description: Heijne, Marloes, et al. Genetic and phenotypic analysis of the pathogenic potential of two novel Chlamydia gallinacea strains compared to Chlamydia psittaci. ''Sci Rep''. 2021 Aug 13; '''11''' (1):16516
A primary cell wall cellulose-dependent defense mechanism against vascular pathogens revealed by time-resolved dual transcriptomics. Description: Menna, Alexandra, et al. A primary cell wall cellulose-dependent defense mechanism against vascular pathogens revealed by time-resolved dual transcriptomics. ''BMC Biol''. 2021 Aug 17; '''19''' (1):161
Phylogenomics of a new fungal phylum reveals multiple waves of reductive evolution across Holomycota. Description: Galindo, Luis Javier, et al. Phylogenomics of a new fungal phylum reveals multiple waves of reductive evolution across Holomycota. ''Nat Commun''. 2021 Aug 17; '''12''' (1):4973
Metagenomics-Based Analysis of the Age-Related Cumulative Effect of Antibiotic Resistance Genes in Gut Microbiota. Description: Wu, Lei, et al. Metagenomics-Based Analysis of the Age-Related Cumulative Effect of Antibiotic Resistance Genes in Gut Microbiota. ''Antibiotics (Basel)''. 2021 Aug 20; '''10''' (8):
Population Genomics Reveals Gene Flow and Adaptive Signature in Invasive Weed Mikania micrantha. Description: Ruan, Xiaoxian, et al. Population Genomics Reveals Gene Flow and Adaptive Signature in Invasive Weed Mikania micrantha. ''Genes (Basel)''. 2021 Aug 20; '''12''' (8):
Comparative transcriptomic analyses of glucosinolate metabolic genes during the formation of Chinese kale seeds. Description: Zhao, Yijiao, et al. Comparative transcriptomic analyses of glucosinolate metabolic genes during the formation of Chinese kale seeds. ''BMC Plant Biol''. 2021 Aug 21; '''21''' (1):394
Characterization of nit sheath protein functions and transglutaminase-mediated cross-linking in the human head louse, Pediculus humanus capitis. Description: Kim, Ju Hyeon, et al. Characterization of nit sheath protein functions and transglutaminase-mediated cross-linking in the human head louse, Pediculus humanus capitis. ''Parasit Vectors''. 2021 Aug 24; '''14''' (1):425
Proteorhodopsin Phototrophy in Antarctic Coastal Waters. Description: Cifuentes-Anticevic, Jeronimo, et al. Proteorhodopsin Phototrophy in Antarctic Coastal Waters. ''mSphere''. 2021 Aug 25; '''6''' (4):e0052521
Substitutions in SurA and BamA Lead to Reduced Susceptibility to Broad Range Antibiotics in Gonococci. Description: Bodoev, Ivan, et al. Substitutions in SurA and BamA Lead to Reduced Susceptibility to Broad Range Antibiotics in Gonococci. ''Genes (Basel)''. 2021 Aug 25; '''12''' (9):
Genome-Resolved Meta-Analysis of the Microbiome in Oil Reservoirs Worldwide. Description: Hidalgo, Kelly J, et al. Genome-Resolved Meta-Analysis of the Microbiome in Oil Reservoirs Worldwide. ''Microorganisms''. 2021 Aug 26; '''9''' (9):
Molecular dynamics study on the relationship between phase transition mechanism and loading direction of AZ31. Description: Yang, Qianhua, et al. Molecular dynamics study on the relationship between phase transition mechanism and loading direction of AZ31. ''Sci Rep''. 2021 Aug 26; '''11''' (1):17229
Human reference gut microbiome catalog including newly assembled genomes from under-represented Asian metagenomes. Description: Kim, Chan Yeong, et al. Human reference gut microbiome catalog including newly assembled genomes from under-represented Asian metagenomes. ''Genome Med''. 2021 Aug 27; '''13''' (1):134
Longitudinal study on the effects of growth-promoting and therapeutic antibiotics on the dynamics of chicken cloacal and litter microbiomes and resistomes. Description: Gupta, Chhedi Lal, et al. Longitudinal study on the effects of growth-promoting and therapeutic antibiotics on the dynamics of chicken cloacal and litter microbiomes and resistomes. ''Microbiome''. 2021 Aug 28; '''9''' (1):178
Altered synthesis of genes associated with short-chain fatty acids in the gut of patients with atrial fibrillation. Description: Zhang, Jing, et al. Altered synthesis of genes associated with short-chain fatty acids in the gut of patients with atrial fibrillation. ''BMC Genomics''. 2021 Aug 31; '''22''' (1):634
Comparative Genomics Provides Insights into the Genetic Diversity and Evolution of the DPANN Superphylum. Description: Li, Liangzhi, et al. Comparative Genomics Provides Insights into the Genetic Diversity and Evolution of the DPANN Superphylum. ''mSystems''. 2021 Aug 31; '''6''' (4):e0060221
Comparative Genomics Reveals Thermal Adaptation and a High Metabolic Diversity in "Candidatus Bathyarchaeia". Description: Qi, Yan-Ling, et al. Comparative Genomics Reveals Thermal Adaptation and a High Metabolic Diversity in "Candidatus Bathyarchaeia". ''mSystems''. 2021 Aug 31; '''6''' (4):e0025221
Deciphering Symbiotic Interactions of "Candidatus Aenigmarchaeota" with Inferred Horizontal Gene Transfers and Co-occurrence Networks. Description: Li, Yu-Xian, et al. Deciphering Symbiotic Interactions of "Candidatus Aenigmarchaeota" with Inferred Horizontal Gene Transfers and Co-occurrence Networks. ''mSystems''. 2021 Aug 31; '''6''' (4):e0060621
Ecogenomics and Adaptation Strategies of Southern Ocean Viral Communities. Description: Alarcon-Schumacher, Tomas, et al. Ecogenomics and Adaptation Strategies of Southern Ocean Viral Communities. ''mSystems''. 2021 Aug 31; '''6''' (4):e0039621
Host Colonization as a Major Evolutionary Force Favoring the Diversity and the Emergence of the Worldwide Multidrug-Resistant Escherichia coli ST131. Description: Bonnet, Richard, et al. Host Colonization as a Major Evolutionary Force Favoring the Diversity and the Emergence of the Worldwide Multidrug-Resistant Escherichia coli ST131. ''mBio''. 2021 Aug 31; '''12''' (4):e0145121
Metabolic Differentiation of Co-occurring Accumulibacter Clades Revealed through Genome-Resolved Metatranscriptomics. Description: McDaniel, Elizabeth A, et al. Metabolic Differentiation of Co-occurring Accumulibacter Clades Revealed through Genome-Resolved Metatranscriptomics. ''mSystems''. 2021 Aug 31; '''6''' (4):e0047421
The Interspecific Fungal Hybrid Verticillium longisporum Displays Subgenome-Specific Gene Expression. Description: Depotter, Jasper R L, et al. The Interspecific Fungal Hybrid Verticillium longisporum Displays Subgenome-Specific Gene Expression. ''mBio''. 2021 Aug 31; '''12''' (4):e0149621
The Resistome and Mobilome of Multidrug-Resistant Staphylococcus sciuri C2865 Unveil a Transferable Trimethoprim Resistance Gene, Designated dfrE, Spread Unnoticed. Description: Gomez-Sanz, Elena, et al. The Resistome and Mobilome of Multidrug-Resistant Staphylococcus sciuri C2865 Unveil a Transferable Trimethoprim Resistance Gene, Designated dfrE, Spread Unnoticed. ''mSystems''. 2021 Aug 31; '''6''' (4):e0051121
A Chromosome-Level Genome Assembly of the Reed Warbler (Acrocephalus scirpaceus). Description: Saetre, Camilla Lo Cascio, et al. A Chromosome-Level Genome Assembly of the Reed Warbler (Acrocephalus scirpaceus). ''Genome Biol Evol''. 2021 Sep 1; '''13''' (9):
ARG-SHINE: improve antibiotic resistance class prediction by integrating sequence homology, functional information and deep convolutional neural network. Description: Wang, Ziye, et al. ARG-SHINE: improve antibiotic resistance class prediction by integrating sequence homology, functional information and deep convolutional neural network. ''NAR Genom Bioinform''. 2021 Sep; '''3''' (3):lqab066
Down regulation of miR-30a-5p and miR-182-5p in gastric cancer: Clinical impact and survival analysis. Description: Soliman, Shimaa E, et al. Down regulation of miR-30a-5p and miR-182-5p in gastric cancer: Clinical impact and survival analysis. ''Biochem Biophys Rep''. 2021 Sep; '''27''': 101079
Next generation sequencing of near-full length genome of norovirus GII.4 from Botswana. Description: Makhaola, Kgomotso, et al. Next generation sequencing of near-full length genome of norovirus GII.4 from Botswana. ''Virus Res''. 2021 Sep; '''302''': 198491
Sialovirome of Brazilian tropical anophelines. Description: da Silva Neves, Nilvanei Aparecido, et al. Sialovirome of Brazilian tropical anophelines. ''Virus Res''. 2021 Sep; '''302''': 198494
Single worm transcriptomics identifies a developmental core network of oscillating genes with deep conservation across nematodes. Description: Sun, Shuai, et al. Single worm transcriptomics identifies a developmental core network of oscillating genes with deep conservation across nematodes. ''Genome Res''. 2021 Sep; '''31''' (9):1590-1601
Benchmarking network-based gene prioritization methods for cerebral small vessel disease. Description: Zhang, Huayu, et al. Benchmarking network-based gene prioritization methods for cerebral small vessel disease. ''Brief Bioinform''. 2021 Sep 2; '''22''' (5):
Arms race in a cell: genomic, transcriptomic, and proteomic insights into intracellular phage-bacteria interplay in deep-sea snail holobionts. Description: Zhou, Kun, et al. Arms race in a cell: genomic, transcriptomic, and proteomic insights into intracellular phage-bacteria interplay in deep-sea snail holobionts. ''Microbiome''. 2021 Sep 3; '''9''' (1):182
Genomic and Phenotypic Analysis of COVID-19-Associated Pulmonary Aspergillosis Isolates of Aspergillus fumigatus. Description: Steenwyk, Jacob L, et al. Genomic and Phenotypic Analysis of COVID-19-Associated Pulmonary Aspergillosis Isolates of Aspergillus fumigatus. ''Microbiol Spectr''. 2021 Sep 3; '''9''' (1):e0001021
Living to the High Extreme: Unraveling the Composition, Structure, and Functional Insights of Bacterial Communities Thriving in the Arsenic-Rich Salar de Huasco Altiplanic Ecosystem. Description: Castro-Severyn, Juan, et al. Living to the High Extreme: Unraveling the Composition, Structure, and Functional Insights of Bacterial Communities Thriving in the Arsenic-Rich Salar de Huasco Altiplanic Ecosystem. ''Microbiol Spectr''. 2021 Sep 3; '''9''' (1):e0044421
Comparative genomic analysis reveals metabolic flexibility of Woesearchaeota. Description: Huang, Wen-Cong, et al. Comparative genomic analysis reveals metabolic flexibility of Woesearchaeota. ''Nat Commun''. 2021 Sep 6; '''12''' (1):5281
Comparative Genomic Analysis of Novel Bifidobacterium longum subsp. longum Strains Reveals Functional Divergence in the Human Gut Microbiota. Description: Diaz, Romina, et al. Comparative Genomic Analysis of Novel Bifidobacterium longum subsp. longum Strains Reveals Functional Divergence in the Human Gut Microbiota. ''Microorganisms''. 2021 Sep 8; '''9''' (9):
Subacute Exposure to an Environmentally Relevant Dose of Di-(2-ethylhexyl) Phthalate during Gestation Alters the Cecal Microbiome, but Not Pregnancy Outcomes in Mice. Description: Chiu, Karen, et al. Subacute Exposure to an Environmentally Relevant Dose of Di-(2-ethylhexyl) Phthalate during Gestation Alters the Cecal Microbiome, but Not Pregnancy Outcomes in Mice. ''Toxics''. 2021 Sep 9; '''9''' (9):
Dynamics of the fecal microbiome and antimicrobial resistome in commercial piglets during the weaning period. Description: Suriyaphol, Prapat, et al. Dynamics of the fecal microbiome and antimicrobial resistome in commercial piglets during the weaning period. ''Sci Rep''. 2021 Sep 10; '''11''' (1):18091
Modelling Nonalcoholic Steatohepatitis In Vivo-A Close Transcriptomic Similarity Supports the Guinea Pig Disease Model. Description: Skat-Rordam, Josephine, et al. Modelling Nonalcoholic Steatohepatitis In Vivo-A Close Transcriptomic Similarity Supports the Guinea Pig Disease Model. ''Biomedicines''. 2021 Sep 10; '''9''' (9):
Relation of Procollagen Type III Amino Terminal Propeptide Level to Sepsis Severity in Pediatrics. Description: Saleh, Nagwan Y, et al. Relation of Procollagen Type III Amino Terminal Propeptide Level to Sepsis Severity in Pediatrics. ''Children (Basel)''. 2021 Sep 10; '''8''' (9):
In Vitro Secretome Analysis Suggests Differential Pathogenic Mechanisms between Fusarium oxysporum f. sp. cubense Race 1 and Race 4. Description: He, Yanqiu, et al. In Vitro Secretome Analysis Suggests Differential Pathogenic Mechanisms between Fusarium oxysporum f. sp. cubense Race 1 and Race 4. ''Biomolecules''. 2021 Sep 12; '''11''' (9):
Exploring the evolutionary process of alkannin/shikonin O-acyltransferases by a reliable Lithospermum erythrorhizon genome. Description: Tang, Chengyi. Exploring the evolutionary process of alkannin/shikonin O-acyltransferases by a reliable Lithospermum erythrorhizon genome. ''DNA Res''. 2021 Sep 13; '''28''' (5):
Prokaryotic viruses impact functional microorganisms in nutrient removal and carbon cycle in wastewater treatment plants. Description: Chen, Yiqiang, et al. Prokaryotic viruses impact functional microorganisms in nutrient removal and carbon cycle in wastewater treatment plants. ''Nat Commun''. 2021 Sep 13; '''12''' (1):5398
Characterization and Genetic Diversity of Listeria monocytogenes Isolated from Cattle Abortions in Latvia, 2013-2018. Description: Steingolde, Zanete, et al. Characterization and Genetic Diversity of Listeria monocytogenes Isolated from Cattle Abortions in Latvia, 2013-2018. ''Vet Sci''. 2021 Sep 14; '''8''' (9):
Disease-induced changes in plant microbiome assembly and functional adaptation. Description: Gao, Min, et al. Disease-induced changes in plant microbiome assembly and functional adaptation. ''Microbiome''. 2021 Sep 15; '''9''' (1):187
Infants with cystic fibrosis have altered fecal functional capacities with potential clinical and metabolic consequences. Description: Eng, Alexander, et al. Infants with cystic fibrosis have altered fecal functional capacities with potential clinical and metabolic consequences. ''BMC Microbiol''. 2021 Sep 15; '''21''' (1):247
De novo Assembly, Annotation, and Analysis of Transcriptome Data of the Ladakh Ground Skink Provide Genetic Information on High-Altitude Adaptation. Description: Hofmann, Sylvia, et al. De novo Assembly, Annotation, and Analysis of Transcriptome Data of the Ladakh Ground Skink Provide Genetic Information on High-Altitude Adaptation. ''Genes (Basel)''. 2021 Sep 16; '''12''' (9):
Microbial characterisation and Cold-Adapted Predicted Protein (CAPP) database construction from the active layer of Greenland's permafrost. Description: Varliero, Gilda, et al. Microbial characterisation and Cold-Adapted Predicted Protein (CAPP) database construction from the active layer of Greenland's permafrost. ''FEMS Microbiol Ecol''. 2021 Sep 16; '''97''' (10):
Direct Metatranscriptomic Survey of the Sunflower Microbiome and Virome. Description: Wang, Ziyi, et al. Direct Metatranscriptomic Survey of the Sunflower Microbiome and Virome. ''Viruses''. 2021 Sep 18; '''13''' (9):
Prognostic Impact of Genetic Variants of MECP2 and TIRAP on Clinical Outcomes of Systemic Lupus Erythematosus with and without Nephritis. Description: Tayel, Safaa I, et al. Prognostic Impact of Genetic Variants of MECP2 and TIRAP on Clinical Outcomes of Systemic Lupus Erythematosus with and without Nephritis. ''Biomolecules''. 2021 Sep 18; '''11''' (9):
Genome sequencing of the neotype strain CBS 554.65 reveals the MAT1-2 locus of Aspergillus niger. Description: Ellena, Valeria, et al. Genome sequencing of the neotype strain CBS 554.65 reveals the MAT1-2 locus of Aspergillus niger. ''BMC Genomics''. 2021 Sep 21; '''22''' (1):679
Identification of Faecalibacterium prausnitzii strains for gut microbiome-based intervention in Alzheimer's-type dementia. Description: Ueda, Atsushi, et al. Identification of Faecalibacterium prausnitzii strains for gut microbiome-based intervention in Alzheimer's-type dementia. ''Cell Rep Med''. 2021 Sep 21; '''2''' (9):100398
Improved Large-Scale Homology Search by Two-Step Seed Search Using Multiple Reduced Amino Acid Alphabets. Description: Takabatake, Kazuki, et al. Improved Large-Scale Homology Search by Two-Step Seed Search Using Multiple Reduced Amino Acid Alphabets. ''Genes (Basel)''. 2021 Sep 21; '''12''' (9):
Infant gut strain persistence is associated with maternal origin, phylogeny, and traits including surface adhesion and iron acquisition. Description: Lou, Yue Clare, et al. Infant gut strain persistence is associated with maternal origin, phylogeny, and traits including surface adhesion and iron acquisition. ''Cell Rep Med''. 2021 Sep 21; '''2''' (9):100393
Metatranscriptomic Analysis of Human Lung Metagenomes from Patients with Lung Cancer. Description: Chang, Ya-Sian, et al. Metatranscriptomic Analysis of Human Lung Metagenomes from Patients with Lung Cancer. ''Genes (Basel)''. 2021 Sep 21; '''12''' (9):
Evaluating the Efficiency of DNA Metabarcoding to Analyze the Diet of Hippocampus guttulatus (Teleostea: Syngnathidae). Description: Lazic, Tamara, et al. Evaluating the Efficiency of DNA Metabarcoding to Analyze the Diet of Hippocampus guttulatus (Teleostea: Syngnathidae). ''Life (Basel)''. 2021 Sep 22; '''11''' (10):
Probiotics maintain the gut microbiome homeostasis during Indian Antarctic expedition by ship. Description: Srivastava, Ashish Kumar, et al. Probiotics maintain the gut microbiome homeostasis during Indian Antarctic expedition by ship. ''Sci Rep''. 2021 Sep 22; '''11''' (1):18793
The First Whole Genome Sequencing of Sanghuangporus sanghuang Provides Insights into Its Medicinal Application and Evolution. Description: Jiang, Ji-Hang, et al. The First Whole Genome Sequencing of Sanghuangporus sanghuang Provides Insights into Its Medicinal Application and Evolution. ''J Fungi (Basel)''. 2021 Sep 22; '''7''' (10):
Genome Evolution of Filamentous Cyanobacterium Nostoc Species: From Facultative Symbiosis to Free Living. Description: Huo, Da, et al. Genome Evolution of Filamentous Cyanobacterium Nostoc Species: From Facultative Symbiosis to Free Living. ''Microorganisms''. 2021 Sep 23; '''9''' (10):
Antibiotic-induced disturbances of the gut microbiota result in accelerated breast tumor growth. Description: McKee, Alastair M, et al. Antibiotic-induced disturbances of the gut microbiota result in accelerated breast tumor growth. ''iScience''. 2021 Sep 24; '''24''' (9):103012
The chromosome-scale genome of Magnolia officinalis provides insight into the evolutionary position of magnoliids. Description: Yin, Yanpeng, et al. The chromosome-scale genome of Magnolia officinalis provides insight into the evolutionary position of magnoliids. ''iScience''. 2021 Sep 24; '''24''' (9):102997
Unveiling electron transfer in a supramolecular aggregate for adaptive and autonomous photochromic response. Description: Kuang, Xiaofei, et al. Unveiling electron transfer in a supramolecular aggregate for adaptive and autonomous photochromic response. ''iScience''. 2021 Sep 24; '''24''' (9):102956
The Response of Airborne Mycobiome to Dust Storms in the Eastern Mediterranean. Description: Peng, Xuefeng, et al. The Response of Airborne Mycobiome to Dust Storms in the Eastern Mediterranean. ''J Fungi (Basel)''. 2021 Sep 25; '''7''' (10):
A Chromosome-Level Assembly of Blunt Snout Bream (Megalobrama amblycephala) Genome Reveals an Expansion of Olfactory Receptor Genes in Freshwater Fish. Description: Liu, Han, et al. A Chromosome-Level Assembly of Blunt Snout Bream (Megalobrama amblycephala) Genome Reveals an Expansion of Olfactory Receptor Genes in Freshwater Fish. ''Mol Biol Evol''. 2021 Sep 27; '''38''' (10):4238-4251
Rooting the Animal Tree of Life. Description: Li, Yuanning, et al. Rooting the Animal Tree of Life. ''Mol Biol Evol''. 2021 Sep 27; '''38''' (10):4322-4333
TRAPID 2.0: a web application for taxonomic and functional analysis of de novo transcriptomes. Description: Bucchini, Francois, et al. TRAPID 2.0: a web application for taxonomic and functional analysis of de novo transcriptomes. ''Nucleic Acids Res''. 2021 Sep 27; '''49''' (17):e101
Crystal Structure and Solid-State Packing of 4-Chloro-5H-1,2,3-dithiazol-5-one and 4-Chloro-5H-1,2,3-dithiazole-5-thione. Description: Constantinides, Christos P, et al. Crystal Structure and Solid-State Packing of 4-Chloro-5H-1,2,3-dithiazol-5-one and 4-Chloro-5H-1,2,3-dithiazole-5-thione. ''Molecules''. 2021 Sep 28; '''26''' (19):
Elucidating gene expression adaptation of phylogenetically divergent coral holobionts under heat stress. Description: Avila-Magana, Viridiana, et al. Elucidating gene expression adaptation of phylogenetically divergent coral holobionts under heat stress. ''Nat Commun''. 2021 Sep 30; '''12''' (1):5731
A chromosome-level genome assembly for the eastern fence lizard (Sceloporus undulatus), a reptile model for physiological and evolutionary ecology. Description: Westfall, Aundrea K, et al. A chromosome-level genome assembly for the eastern fence lizard (Sceloporus undulatus), a reptile model for physiological and evolutionary ecology. ''Gigascience''. 2021 Oct 1; '''10''' (10):
Alterations in the Gut Virome in Obesity and Type 2 Diabetes Mellitus. Description: Yang, Keli, et al. Alterations in the Gut Virome in Obesity and Type 2 Diabetes Mellitus. ''Gastroenterology''. 2021 Oct; '''161''' (4):1257-1269.e13
A metatranscriptomic analysis of changing dynamics in the plankton communities adjacent to aquaculture leases in southern Tasmania, Australia. Description: Hook, Sharon E, et al. A metatranscriptomic analysis of changing dynamics in the plankton communities adjacent to aquaculture leases in southern Tasmania, Australia. ''Mar Genomics''. 2021 Oct; '''59''': 100858
A new carbohydrate-active oligosaccharide dehydratase is involved in the degradation of ulvan. Description: Baumgen, Marcus, et al. A new carbohydrate-active oligosaccharide dehydratase is involved in the degradation of ulvan. ''J Biol Chem''. 2021 Oct; '''297''' (4):101210
Feasibility of neighborhood and building scale wastewater-based genomic epidemiology for pathogen surveillance. Description: Spurbeck, Rachel R, et al. Feasibility of neighborhood and building scale wastewater-based genomic epidemiology for pathogen surveillance. ''Sci Total Environ''. 2021 Oct 1; '''789''': 147829
Metabolic flexibility allows bacterial habitat generalists to become dominant in a frequently disturbed ecosystem. Description: Chen, Ya-Jou, et al. Metabolic flexibility allows bacterial habitat generalists to become dominant in a frequently disturbed ecosystem. ''ISME J''. 2021 Oct; '''15''' (10):2986-3004
Organic carbon quantity and quality jointly triggered the switch between dissimilatory nitrate reduction to ammonium (DNRA) and denitrification in biofilters. Description: Sun, Feng, et al. Organic carbon quantity and quality jointly triggered the switch between dissimilatory nitrate reduction to ammonium (DNRA) and denitrification in biofilters. ''Chemosphere''. 2021 Oct; '''280''': 130917
RNA virome diversity and Wolbachia infection in individual Drosophila simulans flies. Description: Ortiz-Baez, Ayda Susana, et al. RNA virome diversity and Wolbachia infection in individual Drosophila simulans flies. ''J Gen Virol''. 2021 Oct; '''102''' (10):
Synthesis and evaluation of new mixed "2 + 1" Re, (99m)Tc and (186)Re tricarbonyl dithiocarbamate complexes with different monodentate ligands. Description: Shegani, Antonio, et al. Synthesis and evaluation of new mixed "2 + 1" Re, (99m)Tc and (186)Re tricarbonyl dithiocarbamate complexes with different monodentate ligands. ''Bioorg Med Chem''. 2021 Oct 1; '''47''': 116373
Comparison of virulence-related determinants between the ST59-t437 and ST239-t030 genotypes of methicillin-resistant Staphylococcus aureus. Description: Liao, Feng, et al. Comparison of virulence-related determinants between the ST59-t437 and ST239-t030 genotypes of methicillin-resistant Staphylococcus aureus. ''BMC Microbiol''. 2021 Oct 2; '''21''' (1):264
Depside and Depsidone Synthesis in Lichenized Fungi Comes into Focus through a Genome-Wide Comparison of the Olivetoric Acid and Physodic Acid Chemotypes of Pseudevernia furfuracea. Description: Singh, Garima, et al. Depside and Depsidone Synthesis in Lichenized Fungi Comes into Focus through a Genome-Wide Comparison of the Olivetoric Acid and Physodic Acid Chemotypes of Pseudevernia furfuracea. ''Biomolecules''. 2021 Oct 2; '''11''' (10):
RNA-Seq and Electrical Penetration Graph Revealed the Role of Grh1-Mediated Activation of Defense Mechanisms towards Green Rice Leafhopper (Nephotettix cincticeps Uhler) Resistance in Rice (Oryza sativa L.). Description: Kwon, Youngho, et al. RNA-Seq and Electrical Penetration Graph Revealed the Role of Grh1-Mediated Activation of Defense Mechanisms towards Green Rice Leafhopper (Nephotettix cincticeps Uhler) Resistance in Rice (Oryza sativa L.). ''Int J Mol Sci''. 2021 Oct 2; '''22''' (19):
Successional dynamics and alternative stable states in a saline activated sludge microbial community over 9 years. Description: Wang, Yulin, et al. Successional dynamics and alternative stable states in a saline activated sludge microbial community over 9 years. ''Microbiome''. 2021 Oct 6; '''9''' (1):199
Utilizing the VirIdAl Pipeline to Search for Viruses in the Metagenomic Data of Bat Samples. Description: Budkina, Anna Y, et al. Utilizing the VirIdAl Pipeline to Search for Viruses in the Metagenomic Data of Bat Samples. ''Viruses''. 2021 Oct 6; '''13''' (10):
A chromosome-level genome sequence of Chrysanthemum seticuspe, a model species for hexaploid cultivated chrysanthemum. Description: Nakano, Michiharu, et al. A chromosome-level genome sequence of Chrysanthemum seticuspe, a model species for hexaploid cultivated chrysanthemum. ''Commun Biol''. 2021 Oct 7; '''4''' (1):1167
Western and non-western gut microbiomes reveal new roles of Prevotella in carbohydrate metabolism and mouth-gut axis. Description: Prasoodanan P K, Vishnu, et al. Western and non-western gut microbiomes reveal new roles of Prevotella in carbohydrate metabolism and mouth-gut axis. ''NPJ Biofilms Microbiomes''. 2021 Oct 7; '''7''' (1):77
Hybrid Sequencing in Different Types of Goat Skeletal Muscles Reveals Genes Regulating Muscle Development and Meat Quality. Description: Pan, Yangyang, et al. Hybrid Sequencing in Different Types of Goat Skeletal Muscles Reveals Genes Regulating Muscle Development and Meat Quality. ''Animals (Basel)''. 2021 Oct 8; '''11''' (10):
RNA-Seq Analysis of Influenza A Virus-Induced Transcriptional Changes in Mice Lung and Its Possible Implications for the Virus Pathogenicity in Mice. Description: Ma, Tianxin, et al. RNA-Seq Analysis of Influenza A Virus-Induced Transcriptional Changes in Mice Lung and Its Possible Implications for the Virus Pathogenicity in Mice. ''Viruses''. 2021 Oct 8; '''13''' (10):
A Bipartite Geminivirus with a Highly Divergent Genomic Organization Identified in Olive Trees May Represent a Novel Evolutionary Direction in the Family Geminiviridae. Description: Materatski, Patrick, et al. A Bipartite Geminivirus with a Highly Divergent Genomic Organization Identified in Olive Trees May Represent a Novel Evolutionary Direction in the Family Geminiviridae. ''Viruses''. 2021 Oct 9; '''13''' (10):
An Outbreak of tet(X6)-Carrying Tigecycline-Resistant Acinetobacter baumannii Isolates with a New Capsular Type at a Hospital in Taiwan. Description: Hsieh, Yu-Chia, et al. An Outbreak of tet(X6)-Carrying Tigecycline-Resistant Acinetobacter baumannii Isolates with a New Capsular Type at a Hospital in Taiwan. ''Antibiotics (Basel)''. 2021 Oct 12; '''10''' (10):
Comparative RNA-Seq Analyses of Solenopsis japonica (Hymenoptera: Formicidae) Reveal Gene in Response to Cold Stress. Description: Vatanparast, Mohammad, et al. Comparative RNA-Seq Analyses of Solenopsis japonica (Hymenoptera: Formicidae) Reveal Gene in Response to Cold Stress. ''Genes (Basel)''. 2021 Oct 13; '''12''' (10):
Complexity and Local Specificity of the Virome Associated with Tospovirus-Transmitting Thrips Species. Description: Chiapello, M, et al. Complexity and Local Specificity of the Virome Associated with Tospovirus-Transmitting Thrips Species. ''J Virol''. 2021 Oct 13; '''95''' (21):e0059721
Specific gut microbiome signatures and the associated pro-inflamatory functions are linked to pediatric allergy and acquisition of immune tolerance. Description: De Filippis, Francesca, et al. Specific gut microbiome signatures and the associated pro-inflamatory functions are linked to pediatric allergy and acquisition of immune tolerance. ''Nat Commun''. 2021 Oct 13; '''12''' (1):5958
A 2-(benzothiazol-2-yl)-phenolato platinum(II) complex as potential photosensitizer for combating bacterial infections in lung cancer chemotherapydagger. Description: Ortega, Enrique, et al. A 2-(benzothiazol-2-yl)-phenolato platinum(II) complex as potential photosensitizer for combating bacterial infections in lung cancer chemotherapydagger. ''Eur J Med Chem''. 2021 Oct 15; '''222''': 113600
Transcriptome and de novo analysis of Rosa xanthina f. spontanea in response to cold stress. Description: Zhuang, Defeng, et al. Transcriptome and de novo analysis of Rosa xanthina f. spontanea in response to cold stress. ''BMC Plant Biol''. 2021 Oct 15; '''21''' (1):472
Class-II dihydroorotate dehydrogenases from three phylogenetically distant fungi support anaerobic pyrimidine biosynthesis. Description: Bouwknegt, Jonna, et al. Class-II dihydroorotate dehydrogenases from three phylogenetically distant fungi support anaerobic pyrimidine biosynthesis. ''Fungal Biol Biotechnol''. 2021 Oct 16; '''8''' (1):10
Transcriptomic and Coexpression Network Analyses Revealed Pine Chalcone Synthase Genes Associated with Pine Wood Nematode Infection. Description: Chen, Qiaoli, et al. Transcriptomic and Coexpression Network Analyses Revealed Pine Chalcone Synthase Genes Associated with Pine Wood Nematode Infection. ''Int J Mol Sci''. 2021 Oct 17; '''22''' (20):
FA-nf: A Functional Annotation Pipeline for Proteins from Non-Model Organisms Implemented in Nextflow. Description: Vlasova, Anna, et al. FA-nf: A Functional Annotation Pipeline for Proteins from Non-Model Organisms Implemented in Nextflow. ''Genes (Basel)''. 2021 Oct 19; '''12''' (10):
High-quality genome assembly of an important biodiesel plant, Euphorbia lathyris L. Description: Wang, Mingcheng, et al. High-quality genome assembly of an important biodiesel plant, Euphorbia lathyris L. ''DNA Res''. 2021 Oct 19;
Transcriptome analysis of Clavibacter michiganensis subsp. michiganensis-infected tomatoes: a role of salicylic acid in the host response. Description: Yokotani, Naoki, et al. Transcriptome analysis of Clavibacter michiganensis subsp. michiganensis-infected tomatoes: a role of salicylic acid in the host response. ''BMC Plant Biol''. 2021 Oct 19; '''21''' (1):476
Antimicrobial and Anticancer Application of Silver(I) Dipeptide Complexes. Description: Kuzderova, Gabriela, et al. Antimicrobial and Anticancer Application of Silver(I) Dipeptide Complexes. ''Molecules''. 2021 Oct 20; '''26''' (21):
Mobile Antimicrobial Resistance Genes in Probiotics. Description: Toth, Adrienn Greta, et al. Mobile Antimicrobial Resistance Genes in Probiotics. ''Antibiotics (Basel)''. 2021 Oct 21; '''10''' (11):
Prediction of Genes That Function in Methanogenesis and CO2 Pathways in Extremophiles. Description: Tilahun, Lulit, et al. Prediction of Genes That Function in Methanogenesis and CO2 Pathways in Extremophiles. ''Microorganisms''. 2021 Oct 24; '''9''' (11):
A Previously Undescribed Highly Prevalent Phage Identified in a Danish Enteric Virome Catalog. Description: Van Espen, Lore, et al. A Previously Undescribed Highly Prevalent Phage Identified in a Danish Enteric Virome Catalog. ''mSystems''. 2021 Oct 26; '''6''' (5):e0038221
Comparative Genomics Provides Insight into the Function of Broad-Host Range Sponge Symbionts. Description: Waterworth, Samantha C, et al. Comparative Genomics Provides Insight into the Function of Broad-Host Range Sponge Symbionts. ''mBio''. 2021 Oct 26; '''12''' (5):e0157721
Cytokinin Inhibits Fungal Development and Virulence by Targeting the Cytoskeleton and Cellular Trafficking. Description: Gupta, Rupali, et al. Cytokinin Inhibits Fungal Development and Virulence by Targeting the Cytoskeleton and Cellular Trafficking. ''mBio''. 2021 Oct 26; '''12''' (5):e0306820
Enzyme Production Potential of Penicillium oxalicum M1816 and Its Application in Ferulic Acid Production. Description: Zhang, Jing, et al. Enzyme Production Potential of Penicillium oxalicum M1816 and Its Application in Ferulic Acid Production. ''Foods''. 2021 Oct 26; '''10''' (11):
Genome-wide analysis of Claviceps paspali: insights into the secretome of the main species causing ergot disease in Paspalum spp. Description: Oberti, H, et al. Genome-wide analysis of Claviceps paspali: insights into the secretome of the main species causing ergot disease in Paspalum spp. ''BMC Genomics''. 2021 Oct 26; '''22''' (1):766
Genomic Stability and Genetic Defense Systems in Dolosigranulum pigrum, a Candidate Beneficial Bacterium from the Human Microbiome. Description: Flores Ramos, Stephany, et al. Genomic Stability and Genetic Defense Systems in Dolosigranulum pigrum, a Candidate Beneficial Bacterium from the Human Microbiome. ''mSystems''. 2021 Oct 26; '''6''' (5):e0042521
MetaFunPrimer: an Environment-Specific, High-Throughput Primer Design Tool for Improved Quantification of Target Genes. Description: Liu, Jia, et al. MetaFunPrimer: an Environment-Specific, High-Throughput Primer Design Tool for Improved Quantification of Target Genes. ''mSystems''. 2021 Oct 26; '''6''' (5):e0020121
Metagenomic Sequencing of Multiple Soil Horizons and Sites in Close Vicinity Revealed Novel Secondary Metabolite Diversity. Description: Mantri, Shrikant S, et al. Metagenomic Sequencing of Multiple Soil Horizons and Sites in Close Vicinity Revealed Novel Secondary Metabolite Diversity. ''mSystems''. 2021 Oct 26; '''6''' (5):e0101821
Metagenomic Sequencing Reveals that High-Grain Feeding Alters the Composition and Metabolism of Cecal Microbiota and Induces Cecal Mucosal Injury in Sheep. Description: Xie, Fei, et al. Metagenomic Sequencing Reveals that High-Grain Feeding Alters the Composition and Metabolism of Cecal Microbiota and Induces Cecal Mucosal Injury in Sheep. ''mSystems''. 2021 Oct 26; '''6''' (5):e0091521
MinION sequencing from sea ice cryoconites leads to de novo genome reconstruction from metagenomes. Description: Maggiori, Catherine, et al. MinION sequencing from sea ice cryoconites leads to de novo genome reconstruction from metagenomes. ''Sci Rep''. 2021 Oct 26; '''11''' (1):21041
Phylogenomics of SAR116 Clade Reveals Two Subclades with Different Evolutionary Trajectories and an Important Role in the Ocean Sulfur Cycle. Description: Roda-Garcia, Juan J, et al. Phylogenomics of SAR116 Clade Reveals Two Subclades with Different Evolutionary Trajectories and an Important Role in the Ocean Sulfur Cycle. ''mSystems''. 2021 Oct 26; '''6''' (5):e0094421
Depth-dependent variability of biological nitrogen fixation and diazotrophic communities in mangrove sediments. Description: Luo, Zhiwen, et al. Depth-dependent variability of biological nitrogen fixation and diazotrophic communities in mangrove sediments. ''Microbiome''. 2021 Oct 27; '''9''' (1):212
Two Reference-Quality Sea Snake Genomes Reveal Their Divergent Evolution of Adaptive Traits and Venom Systems. Description: Li, An, et al. Two Reference-Quality Sea Snake Genomes Reveal Their Divergent Evolution of Adaptive Traits and Venom Systems. ''Mol Biol Evol''. 2021 Oct 27; '''38''' (11):4867-4883
Alterations in the gut microbiota and metabolite profiles of patients with Kashin-Beck disease, an endemic osteoarthritis in China. Description: Wang, Xi, et al. Alterations in the gut microbiota and metabolite profiles of patients with Kashin-Beck disease, an endemic osteoarthritis in China. ''Cell Death Dis''. 2021 Oct 28; '''12''' (11):1015
Complete genomic sequence and phylogenomics analysis of Agrobacterium strain AB2/73: a new Rhizobium species with a unique mega-Ti plasmid. Description: Hooykaas, Marjolein J G, et al. Complete genomic sequence and phylogenomics analysis of Agrobacterium strain AB2/73: a new Rhizobium species with a unique mega-Ti plasmid. ''BMC Microbiol''. 2021 Oct 28; '''21''' (1):295
Microbial Plankton Community Structure and Function Responses to Vitamin B12 and B1 Amendments in an Upwelling System. Description: Joglar, Vanessa, et al. Microbial Plankton Community Structure and Function Responses to Vitamin B12 and B1 Amendments in an Upwelling System. ''Appl Environ Microbiol''. 2021 Oct 28; '''87''' (22):e0152521
Safety Assessment of Lactiplantibacillus (formerly Lactobacillus) plantarum Q180. Description: Kwon, Yoo Jin, et al. Safety Assessment of Lactiplantibacillus (formerly Lactobacillus) plantarum Q180. ''J Microbiol Biotechnol''. 2021 Oct 28; '''31''' (10):1420-1429
Seasonality and Geography Have a Greater Influence than the Use of Chlorine-Based Cleaning Agents on the Microbiota of Bulk Tank Raw Milk. Description: Yap, Min, et al. Seasonality and Geography Have a Greater Influence than the Use of Chlorine-Based Cleaning Agents on the Microbiota of Bulk Tank Raw Milk. ''Appl Environ Microbiol''. 2021 Oct 28; '''87''' (22):e0108121
Elevated colonic microbiota-associated paucimannosidic and truncated N-glycans in pediatric ulcerative colitis. Description: Li, Henghui, et al. Elevated colonic microbiota-associated paucimannosidic and truncated N-glycans in pediatric ulcerative colitis. ''J Proteomics''. 2021 Oct 30; '''249''': 104369
Adjunctive Probiotics Alleviates Asthmatic Symptoms via Modulating the Gut Microbiome and Serum Metabolome. Description: Liu, Ailing, et al. Adjunctive Probiotics Alleviates Asthmatic Symptoms via Modulating the Gut Microbiome and Serum Metabolome. ''Microbiol Spectr''. 2021 Oct 31; '''9''' (2):e0085921
Biogeography of Bacterial Communities and Specialized Metabolism in Human Aerodigestive Tract Microbiomes. Description: Stubbendieck, Reed M, et al. Biogeography of Bacterial Communities and Specialized Metabolism in Human Aerodigestive Tract Microbiomes. ''Microbiol Spectr''. 2021 Oct 31; '''9''' (2):e0166921
Characterization of the First Cultured Psychrotolerant Representative of Legionella from Antarctica Reveals Its Unique Genome Structure. Description: Shimada, Sho, et al. Characterization of the First Cultured Psychrotolerant Representative of Legionella from Antarctica Reveals Its Unique Genome Structure. ''Microbiol Spectr''. 2021 Oct 31; '''9''' (2):e0042421
Exploring the Genomic Diversity and Antimicrobial Susceptibility of Bifidobacterium pseudocatenulatum in a Vietnamese Population. Description: Chung The, Hao, et al. Exploring the Genomic Diversity and Antimicrobial Susceptibility of Bifidobacterium pseudocatenulatum in a Vietnamese Population. ''Microbiol Spectr''. 2021 Oct 31; '''9''' (2):e0052621
Patterns in the Microbial Community of Salt-Tolerant Plants and the Functional Genes Associated with Salt Stress Alleviation. Description: Zheng, Yanfen, et al. Patterns in the Microbial Community of Salt-Tolerant Plants and the Functional Genes Associated with Salt Stress Alleviation. ''Microbiol Spectr''. 2021 Oct 31; '''9''' (2):e0076721
A comparative study of pan-genome methods for microbial organisms: Acinetobacter baumannii pan-genome reveals structural variation in antimicrobial resistance-carrying plasmids. Description: Urhan, Aysun, et al. A comparative study of pan-genome methods for microbial organisms: Acinetobacter baumannii pan-genome reveals structural variation in antimicrobial resistance-carrying plasmids. ''Microb Genom''. 2021 Nov; '''7''' (11):
A genome guided evaluation of the Lab4 probiotic consortium. Description: Baker, L M, et al. A genome guided evaluation of the Lab4 probiotic consortium. ''Genomics''. 2021 Nov; '''113''' (6):4028-4038
A live measles-vectored COVID-19 vaccine induces strong immunity and protection from SARS-CoV-2 challenge in mice and hamsters. Description: Frantz, Phanramphoei N, et al. A live measles-vectored COVID-19 vaccine induces strong immunity and protection from SARS-CoV-2 challenge in mice and hamsters. ''Nat Commun''. 2021 Nov 1; '''12''' (1):6277
Bakta: rapid and standardized annotation of bacterial genomes via alignment-free sequence identification. Description: Schwengers, Oliver, et al. Bakta: rapid and standardized annotation of bacterial genomes via alignment-free sequence identification. ''Microb Genom''. 2021 Nov; '''7''' (11):
Chemosynthetic and photosynthetic bacteria contribute differentially to primary production across a steep desert aridity gradient. Description: Bay, Sean K, et al. Chemosynthetic and photosynthetic bacteria contribute differentially to primary production across a steep desert aridity gradient. ''ISME J''. 2021 Nov; '''15''' (11):3339-3356
Comprehensive functional core microbiome comparison in genetically obese and lean hosts under the same environment. Description: Martinez-Alvaro, Marina, et al. Comprehensive functional core microbiome comparison in genetically obese and lean hosts under the same environment. ''Commun Biol''. 2021 Nov 1; '''4''' (1):1246
Co-occurring microorganisms regulate the succession of cyanobacterial harmful algal blooms. Description: Wang, Kai, et al. Co-occurring microorganisms regulate the succession of cyanobacterial harmful algal blooms. ''Environ Pollut''. 2021 Nov 1; '''288''': 117682
Distinct composition and metabolic functions of human gut microbiota are associated with cachexia in lung cancer patients. Description: Ni, Yueqiong, et al. Distinct composition and metabolic functions of human gut microbiota are associated with cachexia in lung cancer patients. ''ISME J''. 2021 Nov; '''15''' (11):3207-3220
Histology and transcriptomic analyses of barnacles with different base materials and habitats shed lights on the duplication and chemical diversification of barnacle cement proteins. Description: Lin, Hsiu-Chin, et al. Histology and transcriptomic analyses of barnacles with different base materials and habitats shed lights on the duplication and chemical diversification of barnacle cement proteins. ''BMC Genomics''. 2021 Nov 1; '''22''' (1):783
Neurodevelopment vs. the immune system: Complementary contributions of maternally-inherited gene transcripts and proteins to successful embryonic development in fish. Description: Zarski, Daniel, et al. Neurodevelopment vs. the immune system: Complementary contributions of maternally-inherited gene transcripts and proteins to successful embryonic development in fish. ''Genomics''. 2021 Nov; '''113''' (6):3811-3826
Single-molecule real-time transcript sequencing of developing cotton anthers facilitates genome annotation and fertility restoration candidate gene discovery. Description: Li, Ting, et al. Single-molecule real-time transcript sequencing of developing cotton anthers facilitates genome annotation and fertility restoration candidate gene discovery. ''Genomics''. 2021 Nov; '''113''' (6):4245-4253
The draft chromosome-level genome assembly of tetraploid ground cherry (Prunus fruticosa Pall.) from long reads. Description: Wohner, Thomas W, et al. The draft chromosome-level genome assembly of tetraploid ground cherry (Prunus fruticosa Pall.) from long reads. ''Genomics''. 2021 Nov; '''113''' (6):4173-4183
The role of oxygen in stimulating methane production in wetlands. Description: Wilmoth, Jared L, et al. The role of oxygen in stimulating methane production in wetlands. ''Glob Chang Biol''. 2021 Nov; '''27''' (22):5831-5847
The salmon louse genome: Copepod features and parasitic adaptations. Description: Skern-Mauritzen, Rasmus, et al. The salmon louse genome: Copepod features and parasitic adaptations. ''Genomics''. 2021 Nov; '''113''' (6):3666-3680
*Assisted Self-Assembly to Target Heterometallic Mn-Nd and Mn-Sm SMMs: Synthesis and Magnetic Characterisation of [Mn7 Ln3 (O)4 (OH)4 (mdea)3 (piv)9 (NO3 )3 ] (Ln=Nd, Sm, Eu, Gd).** Description: Kaemmerer, Hagen, et al. Assisted Self-Assembly to Target Heterometallic Mn-Nd and Mn-Sm SMMs: Synthesis and Magnetic Characterisation of [Mn7 Ln3 (O)4 (OH)4 (mdea)3 (piv)9 (NO3 )3 ] (Ln=Nd, Sm, Eu, Gd)*. ''Chemistry''. 2021 Nov 2; '''27''' (61):15095-15101
Burkholderiaceae and Multidrug Resistance Genes Are Key Players in Resistome Development in a Germfree Soil Model. Description: Cao, Yuping, et al. Burkholderiaceae and Multidrug Resistance Genes Are Key Players in Resistome Development in a Germfree Soil Model. ''mSystems''. 2021 Nov 2; e0098821
The Role Transition of Dietary Species Richness in Modulating the Gut Microbial Assembly and Postweaning Performance of a Generalist Herbivore. Description: Li, Guoliang, et al. The Role Transition of Dietary Species Richness in Modulating the Gut Microbial Assembly and Postweaning Performance of a Generalist Herbivore. ''mSystems''. 2021 Nov 2; e0097921
Evaluating de Novo Assembly and Binning Strategies for Time Series Drinking Water Metagenomes. Description: Vosloo, Solize, et al. Evaluating de Novo Assembly and Binning Strategies for Time Series Drinking Water Metagenomes. ''Microbiol Spectr''. 2021 Nov 3; e0143421
Spike Formation Is a Turning Point Determining Wheat Root Microbiome Abundance, Structures and Functions. Description: Usyskin-Tonne, Alla, et al. Spike Formation Is a Turning Point Determining Wheat Root Microbiome Abundance, Structures and Functions. ''Int J Mol Sci''. 2021 Nov 4; '''22''' (21):
The origin and impeded dissemination of the DNA phosphorothioation system in prokaryotes. Description: Jian, Huahua, et al. The origin and impeded dissemination of the DNA phosphorothioation system in prokaryotes. ''Nat Commun''. 2021 Nov 4; '''12''' (1):6382
Analysis of Sex Chromosome Evolution in the Clade Palaeognathae from Phased Genome Assembly. Description: Okuno, Miki, et al. Analysis of Sex Chromosome Evolution in the Clade Palaeognathae from Phased Genome Assembly. ''Genome Biol Evol''. 2021 Nov 5; '''13''' (11):
Chromosome-Level Genome Assembly of Nephotettix cincticeps (Uhler, 1896) (Hemiptera: Cicadellidae: Deltocephalinae). Description: Yan, Bin, et al. Chromosome-Level Genome Assembly of Nephotettix cincticeps (Uhler, 1896) (Hemiptera: Cicadellidae: Deltocephalinae). ''Genome Biol Evol''. 2021 Nov 5; '''13''' (11):
Functional meta-omics provide critical insights into long- and short-read assemblies. Description: Galata, Valentina, et al. Functional meta-omics provide critical insights into long- and short-read assemblies. ''Brief Bioinform''. 2021 Nov 5; '''22''' (6):
iTRAQ-Based Proteomics Analysis of Response to Solanum tuberosum Leaves Treated with the Plant Phytotoxin Thaxtomin A. Description: Liu, Lu, et al. iTRAQ-Based Proteomics Analysis of Response to Solanum tuberosum Leaves Treated with the Plant Phytotoxin Thaxtomin A. ''Int J Mol Sci''. 2021 Nov 7; '''22''' (21):
A Preliminary Evaluation of the Unified Protocol among Trauma-Exposed Adults with and without PTSD. Description: Hood, Caitlyn O, et al. A Preliminary Evaluation of the Unified Protocol among Trauma-Exposed Adults with and without PTSD. ''Int J Environ Res Public Health''. 2021 Nov 8; '''18''' (21):
A novel SARS-CoV-2 related coronavirus in bats from Cambodia. Description: Delaune, Deborah, et al. A novel SARS-CoV-2 related coronavirus in bats from Cambodia. ''Nat Commun''. 2021 Nov 9; '''12''' (1):6563
Expression analyses in Ginkgo biloba provide new insights into the evolution and development of the seed. Description: Zumajo-Cardona, Cecilia, et al. Expression analyses in Ginkgo biloba provide new insights into the evolution and development of the seed. ''Sci Rep''. 2021 Nov 9; '''11''' (1):21995
PangenomeNet: a pan-genome-based network reveals functional modules on antimicrobial resistome for Escherichia coli strains. Description: Her, Hsuan-Lin, et al. PangenomeNet: a pan-genome-based network reveals functional modules on antimicrobial resistome for Escherichia coli strains. ''BMC Bioinformatics''. 2021 Nov 10; '''22''' (1):548
Developmental series of gene expression clarifies maternal mRNA provisioning and maternal-to-zygotic transition in a reef-building coral. Description: Chille, Erin, et al. Developmental series of gene expression clarifies maternal mRNA provisioning and maternal-to-zygotic transition in a reef-building coral. ''BMC Genomics''. 2021 Nov 11; '''22''' (1):815
Synthaser: a CD-Search enabled Python toolkit for analysing domain architecture of fungal secondary metabolite megasynth(et)ases. Description: Gilchrist, Cameron L M, et al. Synthaser: a CD-Search enabled Python toolkit for analysing domain architecture of fungal secondary metabolite megasynth(et)ases. ''Fungal Biol Biotechnol''. 2021 Nov 11; '''8''' (1):13
Genome of the estuarine oyster provides insights into climate impact and adaptive plasticity. Description: Li, Ao, et al. Genome of the estuarine oyster provides insights into climate impact and adaptive plasticity. ''Commun Biol''. 2021 Nov 12; '''4''' (1):1287
Mixed Transcriptome Analysis Revealed the Possible Interaction Mechanisms between Zizania latifolia and Ustilago esculenta Inducing Jiaobai Stem-Gall Formation. Description: Zhang, Zhi-Ping, et al. Mixed Transcriptome Analysis Revealed the Possible Interaction Mechanisms between Zizania latifolia and Ustilago esculenta Inducing Jiaobai Stem-Gall Formation. ''Int J Mol Sci''. 2021 Nov 12; '''22''' (22):
Metagenomic analysis to identify novel infectious agents in systemic anaplastic large cell lymphoma. Description: Mahale, Parag, et al. Metagenomic analysis to identify novel infectious agents in systemic anaplastic large cell lymphoma. ''Infect Agent Cancer''. 2021 Nov 14; '''16''' (1):65
Synthesis, Crystal Structure, and Biological Evaluation of Novel 5-Hydroxymethylpyrimidines. Description: Stolarczyk, Marcin, et al. Synthesis, Crystal Structure, and Biological Evaluation of Novel 5-Hydroxymethylpyrimidines. ''Materials (Basel)''. 2021 Nov 16; '''14''' (22):
Single cell genomics reveals plastid-lacking Picozoa are close relatives of red algae. Description: Schon, Max E, et al. Single cell genomics reveals plastid-lacking Picozoa are close relatives of red algae. ''Nat Commun''. 2021 Nov 17; '''12''' (1):6651
Systematic measurement of combination-drug landscapes to predict in vivo treatment outcomes for tuberculosis. Description: Larkins-Ford, Jonah, et al. Systematic measurement of combination-drug landscapes to predict in vivo treatment outcomes for tuberculosis. ''Cell Syst''. 2021 Nov 17; '''12''' (11):1046-1063.e7
Telomere-to-telomere genome assembly of asparaginase-producing Trichoderma simmonsii. Description: Chung, Dawoon, et al. Telomere-to-telomere genome assembly of asparaginase-producing Trichoderma simmonsii. ''BMC Genomics''. 2021 Nov 17; '''22''' (1):830
Undervalued Pseudo-nifH Sequences in Public Databases Distort Metagenomic Insights into Biological Nitrogen Fixers. Description: Mise, Kazumori, et al. Undervalued Pseudo-nifH Sequences in Public Databases Distort Metagenomic Insights into Biological Nitrogen Fixers. ''mSphere''. 2021 Nov 17; e0078521
Unveiling Ecological and Genetic Novelty within Lytic and Lysogenic Viral Communities of Hot Spring Phototrophic Microbial Mats. Description: Guajardo-Leiva, Sergio, et al. Unveiling Ecological and Genetic Novelty within Lytic and Lysogenic Viral Communities of Hot Spring Phototrophic Microbial Mats. ''Microbiol Spectr''. 2021 Nov 17; e0069421
High Prevalence of Coinfecting Enteropathogens in Suspected Rotavirus Vaccine Breakthrough Cases. Description: Simsek, Ceren, et al. High Prevalence of Coinfecting Enteropathogens in Suspected Rotavirus Vaccine Breakthrough Cases. ''J Clin Microbiol''. 2021 Nov 18; '''59''' (12):e0123621
De novo screening of disease-resistant genes from the chromosome-level genome of rare minnow using CRISPR-cas9 random mutation. Description: Huang, Rong, et al. De novo screening of disease-resistant genes from the chromosome-level genome of rare minnow using CRISPR-cas9 random mutation. ''Gigascience''. 2021 Nov 19; '''10''' (11):
Genome sequencing of the multicellular alga Astrephomene provides insights into convergent evolution of germ-soma differentiation. Description: Yamashita, Shota, et al. Genome sequencing of the multicellular alga Astrephomene provides insights into convergent evolution of germ-soma differentiation. ''Sci Rep''. 2021 Nov 22; '''11''' (1):22231
Interspecies variation in hominid gut microbiota controls host gene regulation. Description: Muehlbauer, Amanda L, et al. Interspecies variation in hominid gut microbiota controls host gene regulation. ''Cell Rep''. 2021 Nov 23; '''37''' (8):110057
Weaning Age and Its Effect on the Development of the Swine Gut Microbiome and Resistome. Description: Holman, Devin B, et al. Weaning Age and Its Effect on the Development of the Swine Gut Microbiome and Resistome. ''mSystems''. 2021 Nov 23; e0068221
Genomic Characterization of Imipenem- and Imipenem-Relebactam-Resistant Clinical Isolates of Pseudomonas aeruginosa. Description: Lopez-Perez, Mario, et al. Genomic Characterization of Imipenem- and Imipenem-Relebactam-Resistant Clinical Isolates of Pseudomonas aeruginosa. ''mSphere''. 2021 Nov 24; e0083621
Highly flexible metabolism of the marine euglenozoan protist Diplonema papillatum. Description: Skodova-Sverakova, Ingrid, et al. Highly flexible metabolism of the marine euglenozoan protist Diplonema papillatum. ''BMC Biol''. 2021 Nov 24; '''19''' (1):251
Metagenomics of Antarctic Marine Sediment Reveals Potential for Diverse Chemolithoautotrophy. Description: Garber, Arkadiy I, et al. Metagenomics of Antarctic Marine Sediment Reveals Potential for Diverse Chemolithoautotrophy. ''mSphere''. 2021 Nov 24; e0077021
Predicting the hosts of prokaryotic viruses using GCN-based semi-supervised learning. Description: Shang, Jiayu, et al. Predicting the hosts of prokaryotic viruses using GCN-based semi-supervised learning. ''BMC Biol''. 2021 Nov 24; '''19''' (1):250
Gut microbiome drives individual memory variation in bumblebees. Description: Li, Li, et al. Gut microbiome drives individual memory variation in bumblebees. ''Nat Commun''. 2021 Nov 25; '''12''' (1):6588
Love bites: male frogs (Plectrohyla, Hylidae) use teeth scratching to deliver sodefrin precursor-like factors to females during amplexus. Description: Schulte, Lisa M, et al. Love bites: male frogs (Plectrohyla, Hylidae) use teeth scratching to deliver sodefrin precursor-like factors to females during amplexus. ''Front Zool''. 2021 Nov 25; '''18''' (1):59
Leave no stone unturned: individually adapted xerotolerant Thaumarchaeota sheltered below the boulders of the Atacama Desert hyperarid core. Description: Hwang, Yunha, et al. Leave no stone unturned: individually adapted xerotolerant Thaumarchaeota sheltered below the boulders of the Atacama Desert hyperarid core. ''Microbiome''. 2021 Nov 26; '''9''' (1):234
Alteration of the gut microbiota in rhesus monkey with spontaneous osteoarthritis. Description: Yan, Yaping, et al. Alteration of the gut microbiota in rhesus monkey with spontaneous osteoarthritis. ''BMC Microbiol''. 2021 Nov 27; '''21''' (1):328
Acidovorax pan-genome reveals specific functional traits for plant beneficial and pathogenic plant-associations. Description: Siani, Roberto, et al. Acidovorax pan-genome reveals specific functional traits for plant beneficial and pathogenic plant-associations. ''Microb Genom''. 2021 Dec; '''7''' (12):
An in vitro model for studies of attenuation of antibiotic-inhibited growth of Aggregatibacter actinomycetemcomitans Y4 by polyamines. Description: Wattimena, Allan, et al. An in vitro model for studies of attenuation of antibiotic-inhibited growth of Aggregatibacter actinomycetemcomitans Y4 by polyamines. ''Mol Oral Microbiol''. 2021 Dec; '''36''' (6):308-315
A versatile genetic toolbox for Prevotella copri enables studying polysaccharide utilization systems. Description: Li, Jing, et al. A versatile genetic toolbox for Prevotella copri enables studying polysaccharide utilization systems. ''EMBO J''. 2021 Dec 1; '''40''' (23):e108287
Contrast-enhanced computed tomography assessment of aortic stenosis. Description: Cartlidge, Timothy Rg, et al. Contrast-enhanced computed tomography assessment of aortic stenosis. ''Heart''. 2021 Dec; '''107''' (23):1905-1911
Diamond-Forrester classification using echocardiography haemodynamic assessment in cardiac intensive care unit patients. Description: Kim, Kyung-Hee, et al. Diamond-Forrester classification using echocardiography haemodynamic assessment in cardiac intensive care unit patients. ''ESC Heart Fail''. 2021 Dec; '''8''' (6):4933-4943
Extraction and characterisation of arabinoxylan from brewers spent grain and investigation of microbiome modulation potential. Description: Lynch, Kieran M, et al. Extraction and characterisation of arabinoxylan from brewers spent grain and investigation of microbiome modulation potential. ''Eur J Nutr''. 2021 Dec; '''60''' (8):4393-4411
Modelling of gene loss propensity in the pangenomes of three Brassica species suggests different mechanisms between polyploids and diploids. Description: Bayer, Philipp E, et al. Modelling of gene loss propensity in the pangenomes of three Brassica species suggests different mechanisms between polyploids and diploids. ''Plant Biotechnol J''. 2021 Dec; '''19''' (12):2488-2500
OrtSuite: from genomes to prediction of microbial interactions within targeted ecosystem processes. Description: Saraiva, Joao Pedro, et al. OrtSuite: from genomes to prediction of microbial interactions within targeted ecosystem processes. ''Life Sci Alliance''. 2021 Dec; '''4''' (12):
Spatial-temporal targeted and non-targeted surveys to assess microbiological composition of drinking water in Puerto Rico following Hurricane Maria. Description: Sevillano, Maria, et al. Spatial-temporal targeted and non-targeted surveys to assess microbiological composition of drinking water in Puerto Rico following Hurricane Maria. ''Water Res X''. 2021 Dec 1; '''13''': 100123
Systematic investigation of the amino acid profiles that are correlated with xanthine oxidase inhibitory activity: Effects, mechanism and applications in protein source screening. Description: Huang, Yumeng, et al. Systematic investigation of the amino acid profiles that are correlated with xanthine oxidase inhibitory activity: Effects, mechanism and applications in protein source screening. ''Free Radic Biol Med''. 2021 Dec; '''177''': 326-336
Terrestrial-type nitrogen-fixing symbiosis between seagrass and a marine bacterium. Description: Mohr, Wiebke, et al. Terrestrial-type nitrogen-fixing symbiosis between seagrass and a marine bacterium. ''Nature''. 2021 Dec; '''600''' (7887):105-109
The association between hypertension and nonalcoholic fatty liver disease (NAFLD): literature evidence and systems biology analysis. Description: Ma, Chongyang, et al. The association between hypertension and nonalcoholic fatty liver disease (NAFLD): literature evidence and systems biology analysis. ''Bioengineered''. 2021 Dec; '''12''' (1):2187-2202
The Cymbidium genome reveals the evolution of unique morphological traits. Description: Ai, Ye, et al. The Cymbidium genome reveals the evolution of unique morphological traits. ''Hortic Res''. 2021 Dec 1; '''8''' (1):255
The Euscaphis japonica genome and the evolution of malvids. Description: Sun, Wei-Hong, et al. The Euscaphis japonica genome and the evolution of malvids. ''Plant J''. 2021 Dec; '''108''' (5):1382-1399
The genetic basis of phage susceptibility, cross-resistance and host-range in Salmonella. Description: Adler, Benjamin A, et al. The genetic basis of phage susceptibility, cross-resistance and host-range in Salmonella. ''Microbiology (Reading)''. 2021 Dec; '''167''' (12):
Viral evolution sustains a dengue outbreak of enhanced severity. Description: Inizan, Catherine, et al. Viral evolution sustains a dengue outbreak of enhanced severity. ''Emerg Microbes Infect''. 2021 Dec; '''10''' (1):536-544
Viromes and surveys of RNA viruses in camel-derived ticks revealing transmission patterns of novel tick-borne viral pathogens in Kenya. Description: Zhang, You, et al. Viromes and surveys of RNA viruses in camel-derived ticks revealing transmission patterns of novel tick-borne viral pathogens in Kenya. ''Emerg Microbes Infect''. 2021 Dec; '''10''' (1):1975-1987
Worldwide distribution and environmental origin of the Adelaide imipenemase (AIM-1), a potent carbapenemase in Pseudomonas aeruginosa. Description: Amsalu, Anteneh, et al. Worldwide distribution and environmental origin of the Adelaide imipenemase (AIM-1), a potent carbapenemase in Pseudomonas aeruginosa. ''Microb Genom''. 2021 Dec; '''7''' (12):
Reproductive health and endocrine disruption in smallmouth bass (Micropterus dolomieu) from the Lake Erie drainage, Pennsylvania, USA. Description: Walsh, Heather L, et al. Reproductive health and endocrine disruption in smallmouth bass (Micropterus dolomieu) from the Lake Erie drainage, Pennsylvania, USA. ''Environ Monit Assess''. 2021 Dec 4; '''194''' (1):3
Transcriptome Analysis Reveals the Gene Expression Changes in the Silkworm (Bombyx mori) in Response to Hydrogen Sulfide Exposure. Description: Zhang, Rui, et al. Transcriptome Analysis Reveals the Gene Expression Changes in the Silkworm (Bombyx mori) in Response to Hydrogen Sulfide Exposure. ''Insects''. 2021 Dec 13; '''12''' (12):
Streptozotocin-induced hyperglycemia alters the cecal metabolome and exacerbates antibiotic-induced dysbiosis. Description: Wurster, Jenna I, et al. Streptozotocin-induced hyperglycemia alters the cecal metabolome and exacerbates antibiotic-induced dysbiosis. ''Cell Rep''. 2021 Dec 14; '''37''' (11):110113
Draft genome of the blister beetle, Epicauta chinensis. Description: Tian, Xing, et al. Draft genome of the blister beetle, Epicauta chinensis. ''Int J Biol Macromol''. 2021 Dec 15; '''193''' (Pt B):1694-1706
Adapting Macroecology to Microbiology: Using Occupancy Modeling To Assess Functional Profiles across Metagenomes. Description: Hilts, Angus S, et al. Adapting Macroecology to Microbiology: Using Occupancy Modeling To Assess Functional Profiles across Metagenomes. ''mSystems''. 2021 Dec 21; '''6''' (6):e0079021
Resolving the immune landscape of human prostate at a single-cell level in health and cancer. Description: Tuong, Zewen Kelvin, et al. Resolving the immune landscape of human prostate at a single-cell level in health and cancer. ''Cell Rep''. 2021 Dec 21; '''37''' (12):110132
Rotavirus NSP1 Contributes to Intestinal Viral Replication, Pathogenesis, and Transmission. Description: Hou, Gaopeng, et al. Rotavirus NSP1 Contributes to Intestinal Viral Replication, Pathogenesis, and Transmission. ''mBio''. 2021 Dec 21; '''12''' (6):e0320821
Taxon-Specific Shifts in Bacterial and Archaeal Transcription of Dissolved Organic Matter Cycling Genes in a Stratified Fjord. Description: Pontiller, Benjamin, et al. Taxon-Specific Shifts in Bacterial and Archaeal Transcription of Dissolved Organic Matter Cycling Genes in a Stratified Fjord. ''mSystems''. 2021 Dec 21; '''6''' (6):e0057521
Transcriptomic and Proteomic Characterizations of the Molecular Response to Blue Light and Salicylic Acid in Haematococcus pluvialis. Description: Wang, Xiaodong, et al. Transcriptomic and Proteomic Characterizations of the Molecular Response to Blue Light and Salicylic Acid in Haematococcus pluvialis. ''Mar Drugs''. 2021 Dec 21; '''20''' (1):
Differences in Fecal Microbiome and Antimicrobial Resistance between Captive and Free-Range Sika Deer under the Same Exposure of Antibiotic Anthelmintics. Description: Wu, Kangqi, et al. Differences in Fecal Microbiome and Antimicrobial Resistance between Captive and Free-Range Sika Deer under the Same Exposure of Antibiotic Anthelmintics. ''Microbiol Spectr''. 2021 Dec 22; '''9''' (3):e0191821
Muribaculaceae Genomes Assembled from Metagenomes Suggest Genetic Drivers of Differential Response to Acarbose Treatment in Mice. Description: Smith, Byron J, et al. Muribaculaceae Genomes Assembled from Metagenomes Suggest Genetic Drivers of Differential Response to Acarbose Treatment in Mice. ''mSphere''. 2021 Dec 22; '''6''' (6):e0085121
Metagenomic Study on Chinese Homemade Paocai: The Effects of Raw Materials and Fermentation Periods on the Microbial Ecology and Volatile Components. Description: Jiang, Linjun, et al. Metagenomic Study on Chinese Homemade Paocai: The Effects of Raw Materials and Fermentation Periods on the Microbial Ecology and Volatile Components. ''Foods''. 2021 Dec 28; '''11''' (1):
The multiple effects of fecal microbiota transplantation on diarrhea-predominant irritable bowel syndrome (IBS-D) patients with anxiety and depression behaviors. Description: Lin, Hao, et al. The multiple effects of fecal microbiota transplantation on diarrhea-predominant irritable bowel syndrome (IBS-D) patients with anxiety and depression behaviors. ''Microb Cell Fact''. 2021 Dec 28; '''20''' (1):233
AadA36, a novel chromosomal aminoglycoside nucleotidyltransferase from a clinical isolate of Providencia stuartii. Description: Gao, Mengdi, et al. AadA36, a novel chromosomal aminoglycoside nucleotidyltransferase from a clinical isolate of Providencia stuartii. ''Front Microbiol''. 2022; '''13''': 1035651
A catalogue of 1,167 genomes from the human gut archaeome. Description: Chibani, Cynthia Maria, et al. A catalogue of 1,167 genomes from the human gut archaeome. ''Nat Microbiol''. 2022 Jan; '''7''' (1):48-61
Adaptation of the infant gut microbiome during the complementary feeding transition. Description: McKeen, Starin, et al. Adaptation of the infant gut microbiome during the complementary feeding transition. ''PLoS One''. 2022; '''17''' (7):e0270213
Biosynthetic potential of uncultured Antarctic soil bacteria revealed through long-read metagenomic sequencing. Description: Waschulin, Valentin, et al. Biosynthetic potential of uncultured Antarctic soil bacteria revealed through long-read metagenomic sequencing. ''ISME J''. 2022 Jan; '''16''' (1):101-111
Cannabinoid control of gingival immune activation in chronically SIV-infected rhesus macaques involves modulation of the indoleamine-2,3-dioxygenase-1 pathway and salivary microbiome. Description: McDew-White, Marina, et al. Cannabinoid control of gingival immune activation in chronically SIV-infected rhesus macaques involves modulation of the indoleamine-2,3-dioxygenase-1 pathway and salivary microbiome. ''EBioMedicine''. 2022 Jan; '''75''': 103769
Change in composition and potential functional genes of microbial communities on carbonatite rinds with different weathering times. Description: Chen, Jin, et al. Change in composition and potential functional genes of microbial communities on carbonatite rinds with different weathering times. ''Front Microbiol''. 2022; '''13''': 1024672
De novo transcriptome assembly and identification of G-Protein-Coupled-Receptors (GPCRs) in two species of monogenean parasites of fish. Description: Cana-Bozada, Victor, et al. De novo transcriptome assembly and identification of G-Protein-Coupled-Receptors (GPCRs) in two species of monogenean parasites of fish. ''Parasite''. 2022; '''29''': 51
Dietary Isoflavones Alter Gut Microbiota and Lipopolysaccharide Biosynthesis to Reduce Inflammation. Description: Ghimire, Sudeep, et al. Dietary Isoflavones Alter Gut Microbiota and Lipopolysaccharide Biosynthesis to Reduce Inflammation. ''Gut Microbes''. 2022 Jan-Dec; '''14''' (1):2127446
Economic Analysis of the CADScor System for Ruling Out Coronary Artery Disease in England. Description: Javanbakht, Mehdi, et al. Economic Analysis of the CADScor System for Ruling Out Coronary Artery Disease in England. ''Pharmacoecon Open''. 2022 Jan; '''6''' (1):123-135
Effects of different weaning times on the stress response and the intestinal microbiota composition of female forest musk deer (Moschus berezovskii) and their fawns. Description: Li, Yimeng, et al. Effects of different weaning times on the stress response and the intestinal microbiota composition of female forest musk deer (Moschus berezovskii) and their fawns. ''PLoS One''. 2022; '''17''' (10):e0276542
Evolutionarily recent dual obligatory symbiosis among adelgids indicates a transition between fungus- and insect-associated lifestyles. Description: Szabo, Gitta, et al. Evolutionarily recent dual obligatory symbiosis among adelgids indicates a transition between fungus- and insect-associated lifestyles. ''ISME J''. 2022 Jan; '''16''' (1):247-256
Extensive non-coding sequence divergence between the major human pathogen Aspergillus fumigatus and its relatives. Description: Brown, Alec, et al. Extensive non-coding sequence divergence between the major human pathogen Aspergillus fumigatus and its relatives. ''Front Fungal Biol''. 2022; '''3''':
Gut microbiome of captive wolves is more similar to domestic dogs than wild wolves indicated by metagenomics study. Description: Chen, Lei, et al. Gut microbiome of captive wolves is more similar to domestic dogs than wild wolves indicated by metagenomics study. ''Front Microbiol''. 2022; '''13''': 1027188
Lacticaseibacillus rhamnosus HN001 alters the microbiota composition in the cecum but not the feces in a piglet model. Description: Young, Wayne, et al. Lacticaseibacillus rhamnosus HN001 alters the microbiota composition in the cecum but not the feces in a piglet model. ''Front Nutr''. 2022; '''9''': 1002369
Linking meta-omics to the kinetics of denitrification intermediates reveals pH-dependent causes of N2O emissions and nitrite accumulation in soil. Description: Frostegard, Asa, et al. Linking meta-omics to the kinetics of denitrification intermediates reveals pH-dependent causes of N2O emissions and nitrite accumulation in soil. ''ISME J''. 2022 Jan; '''16''' (1):26-37
Local-scale virome depiction in Medellin, Colombia, supports significant differences between Aedes aegypti and Aedes albopictus. Description: Calle-Tobon, Arley, et al. Local-scale virome depiction in Medellin, Colombia, supports significant differences between Aedes aegypti and Aedes albopictus. ''PLoS One''. 2022; '''17''' (7):e0263143
Maternal diet associated with infants' intestinal microbiota mediated by predominant long-chain fatty acid in breast milk. Description: Xi, Menglu, et al. Maternal diet associated with infants' intestinal microbiota mediated by predominant long-chain fatty acid in breast milk. ''Front Microbiol''. 2022; '''13''': 1004175
MEDUSA: A Pipeline for Sensitive Taxonomic Classification and Flexible Functional Annotation of Metagenomic Shotgun Sequences. Description: Morais, Diego A A, et al. MEDUSA: A Pipeline for Sensitive Taxonomic Classification and Flexible Functional Annotation of Metagenomic Shotgun Sequences. ''Front Genet''. 2022; '''13''': 814437
Metagenomic and metabolic analyses of poly-extreme microbiome from an active crater volcano lake. Description: Pena-Ocana, Betsy Anaid, et al. Metagenomic and metabolic analyses of poly-extreme microbiome from an active crater volcano lake. ''Environ Res''. 2022 Jan; '''203''': 111862
Meta-transcriptomics reveals potential virus transfer between Aedes communis mosquitoes and their parasitic water mites. Description: Ortiz-Baez, Ayda Susana, et al. Meta-transcriptomics reveals potential virus transfer between Aedes communis mosquitoes and their parasitic water mites. ''Virus Evol''. 2022; '''8''' (2):veac090
Novel RNA viruses associated with avian haemosporidian parasites. Description: Rodrigues, Jose Roberto, et al. Novel RNA viruses associated with avian haemosporidian parasites. ''PLoS One''. 2022; '''17''' (6):e0269881
Quantifying the effects of hydrogen on carbon assimilation in a seafloor microbial community associated with ultramafic rocks. Description: Coskun, Omer K, et al. Quantifying the effects of hydrogen on carbon assimilation in a seafloor microbial community associated with ultramafic rocks. ''ISME J''. 2022 Jan; '''16''' (1):257-271
RNA Virosphere in a Marine Zooplankton Community in the Subtropical Western North Pacific. Description: Hirai, Junya, et al. RNA Virosphere in a Marine Zooplankton Community in the Subtropical Western North Pacific. ''Microbes Environ''. 2022; '''37''' (5):
Rural environment reduces allergic inflammation by modulating the gut microbiota. Description: Yang, Zhaowei, et al. Rural environment reduces allergic inflammation by modulating the gut microbiota. ''Gut Microbes''. 2022 Jan-Dec; '''14''' (1):2125733
Technical note: overcoming host contamination in bovine vaginal metagenomic samples with nanopore adaptive sequencing. Description: Ong, Chian Teng, et al. Technical note: overcoming host contamination in bovine vaginal metagenomic samples with nanopore adaptive sequencing. ''J Anim Sci''. 2022 Jan 1; '''100''' (1):
The landscape in the gut microbiome of long-lived families reveals new insights on longevity and aging - relevant neural and immune function. Description: Wang, Jingjing, et al. The landscape in the gut microbiome of long-lived families reveals new insights on longevity and aging - relevant neural and immune function. ''Gut Microbes''. 2022 Jan-Dec; '''14''' (1):2107288
The plasmid-encoded lactose operon plays a vital role in the acid production rate of Lacticaseibacillus casei during milk beverage fermentation. Description: Li, Xiaoxia, et al. The plasmid-encoded lactose operon plays a vital role in the acid production rate of Lacticaseibacillus casei during milk beverage fermentation. ''Front Microbiol''. 2022; '''13''': 1016904
Tracing RNA viruses associated with Nudibranchia gastropods. Description: Rosani, Umberto. Tracing RNA viruses associated with Nudibranchia gastropods. ''PeerJ''. 2022; '''10''': e13410
Whole-body metabolic modelling predicts isoleucine dependency of SARS-CoV-2 replication. Description: Thiele, Ines, et al. Whole-body metabolic modelling predicts isoleucine dependency of SARS-CoV-2 replication. ''Comput Struct Biotechnol J''. 2022; '''20''': 4098-4109
Endophytic fungus Pseudodidymocyrtis lobariellae KL27 promotes taxol biosynthesis and accumulation in Taxus chinensis. Description: Cao, Xiaoying, et al. Endophytic fungus Pseudodidymocyrtis lobariellae KL27 promotes taxol biosynthesis and accumulation in Taxus chinensis. ''BMC Plant Biol''. 2022 Jan 3; '''22''' (1):12
A Chromosome-Level Genome Assembly of the Parasitic Wasp Chelonus formosanus Sonan 1932 (Hymenoptera: Braconidae). Description: Liu, Jian-Feng, et al. A Chromosome-Level Genome Assembly of the Parasitic Wasp Chelonus formosanus Sonan 1932 (Hymenoptera: Braconidae). ''Genome Biol Evol''. 2022 Jan 4; '''14''' (1):
Evidence from Drosophila Supports Higher Duplicability of Faster Evolving Genes. Description: Vance, Zoe, et al. Evidence from Drosophila Supports Higher Duplicability of Faster Evolving Genes. ''Genome Biol Evol''. 2022 Jan 4; '''14''' (1):
Metatranscriptome Profiling of a Specialized Microbial Consortium during the Degradation of Nixtamalized Maize Pericarp. Description: Serrano-Gamboa, Jose German, et al. Metatranscriptome Profiling of a Specialized Microbial Consortium during the Degradation of Nixtamalized Maize Pericarp. ''Microbiol Spectr''. 2022 Jan 5; e0231821
The rumen liquid metatranscriptome of post-weaned dairy calves differed by pre-weaning ruminal administration of differentially-enriched, rumen-derived inocula. Description: Park, Tansol, et al. The rumen liquid metatranscriptome of post-weaned dairy calves differed by pre-weaning ruminal administration of differentially-enriched, rumen-derived inocula. ''Anim Microbiome''. 2022 Jan 5; '''4''' (1):4
Atom-precise fluorescent copper cluster for tumor microenvironment targeting and transient chemodynamic cancer therapy. Description: Yang, Zhenzhen, et al. Atom-precise fluorescent copper cluster for tumor microenvironment targeting and transient chemodynamic cancer therapy. ''J Nanobiotechnology''. 2022 Jan 6; '''20''' (1):20
Evolutionary Implications of the RNA N6-Methyladenosine Methylome in Plants. Description: Miao, Zhenyan, et al. Evolutionary Implications of the RNA N6-Methyladenosine Methylome in Plants. ''Mol Biol Evol''. 2022 Jan 7; '''39''' (1):
InsectBase 2.0: a comprehensive gene resource for insects. Description: Mei, Yang, et al. InsectBase 2.0: a comprehensive gene resource for insects. ''Nucleic Acids Res''. 2022 Jan 7; '''50''' (D1):D1040-D1045
Increased circulating butyrate and ursodeoxycholate during probiotic intervention in humans with type 2 diabetes. Description: McMurdie, Paul J, et al. Increased circulating butyrate and ursodeoxycholate during probiotic intervention in humans with type 2 diabetes. ''BMC Microbiol''. 2022 Jan 8; '''22''' (1):19
A pilot exploration of multi-omics research of gut microbiome in major depressive disorders. Description: Zhao, Haoyang, et al. A pilot exploration of multi-omics research of gut microbiome in major depressive disorders. ''Transl Psychiatry''. 2022 Jan 10; '''12''' (1):8
Genome-wide identification of the Liriodendron chinense WRKY gene family and its diverse roles in response to multiple abiotic stress. Description: Wu, Weihuang, et al. Genome-wide identification of the Liriodendron chinense WRKY gene family and its diverse roles in response to multiple abiotic stress. ''BMC Plant Biol''. 2022 Jan 10; '''22''' (1):25
High viral abundance and low diversity are associated with increased CRISPR-Cas prevalence across microbial ecosystems. Description: Meaden, Sean, et al. High viral abundance and low diversity are associated with increased CRISPR-Cas prevalence across microbial ecosystems. ''Curr Biol''. 2022 Jan 10; '''32''' (1):220-227.e5
Phylogenetically and functionally diverse microorganisms reside under the Ross Ice Shelf. Description: Martinez-Perez, Clara, et al. Phylogenetically and functionally diverse microorganisms reside under the Ross Ice Shelf. ''Nat Commun''. 2022 Jan 10; '''13''' (1):117
Chromosome-level genome assembly of Zizania latifolia provides insights into its seed shattering and phytocassane biosynthesis. Description: Yan, Ning, et al. Chromosome-level genome assembly of Zizania latifolia provides insights into its seed shattering and phytocassane biosynthesis. ''Commun Biol''. 2022 Jan 11; '''5''' (1):36
Genome-Resolved Metagenomics Reveals Distinct Phosphorus Acquisition Strategies between Soil Microbiomes. Description: Wu, Xingjie, et al. Genome-Resolved Metagenomics Reveals Distinct Phosphorus Acquisition Strategies between Soil Microbiomes. ''mSystems''. 2022 Jan 11; e0110721
Utilization Efficiency of Human Milk Oligosaccharides by Human-Associated Akkermansia Is Strain Dependent. Description: Luna, Estefani, et al. Utilization Efficiency of Human Milk Oligosaccharides by Human-Associated Akkermansia Is Strain Dependent. ''Appl Environ Microbiol''. 2022 Jan 11; '''88''' (1):e0148721
Distribution and Evolutionary History of Sialic Acid Catabolism in the Phylum Actinobacteria. Description: Li, Yisong, et al. Distribution and Evolutionary History of Sialic Acid Catabolism in the Phylum Actinobacteria. ''Microbiol Spectr''. 2022 Jan 12; e0238021
Genetic diversity in terrestrial subsurface ecosystems impacted by geological degassing. Description: Bornemann, Till L V, et al. Genetic diversity in terrestrial subsurface ecosystems impacted by geological degassing. ''Nat Commun''. 2022 Jan 12; '''13''' (1):284
A Comprehensive Assessment of the Secretome Responsible for Host Adaptation of the Legume Root Pathogen Aphanomyces euteiches. Description: Kiselev, Andrei, et al. A Comprehensive Assessment of the Secretome Responsible for Host Adaptation of the Legume Root Pathogen Aphanomyces euteiches. ''J Fungi (Basel)''. 2022 Jan 17; '''8''' (1):
Multimodal deep learning applied to classify healthy and disease states of human microbiome. Description: Lee, Seung Jae, et al. Multimodal deep learning applied to classify healthy and disease states of human microbiome. ''Sci Rep''. 2022 Jan 17; '''12''' (1):824
Elevational Constraints on the Composition and Genomic Attributes of Microbial Communities in Antarctic Soils. Description: Dragone, Nicholas B, et al. Elevational Constraints on the Composition and Genomic Attributes of Microbial Communities in Antarctic Soils. ''mSystems''. 2022 Jan 18; e0133021
The chrysanthemum lavandulifolium genome and the molecular mechanism underlying diverse capitulum types. Description: Wen, Xiaohui, et al. The chrysanthemum lavandulifolium genome and the molecular mechanism underlying diverse capitulum types. ''Hortic Res''. 2022 Jan 18;
Controllable synthesis of high-quality two-dimensional tellurium by a facile chemical vapor transport strategy. Description: Zhao, Xinxin, et al. Controllable synthesis of high-quality two-dimensional tellurium by a facile chemical vapor transport strategy. ''iScience''. 2022 Jan 21; '''25''' (1):103594
Association of Lipoprotein(a) With Atherosclerotic Plaque Progression. Description: Kaiser, Yannick, et al. Association of Lipoprotein(a) With Atherosclerotic Plaque Progression. ''J Am Coll Cardiol''. 2022 Jan 25; '''79''' (3):223-233
Microbiota of the prostate tumor environment investigated by whole-transcriptome profiling. Description: Salachan, Paul Vinu, et al. Microbiota of the prostate tumor environment investigated by whole-transcriptome profiling. ''Genome Med''. 2022 Jan 25; '''14''' (1):9
Microbiomes of air dust collected during the ground-based closed bioregenerative life support experiment "Lunar Palace 365". Description: Yang, Jianlou, et al. Microbiomes of air dust collected during the ground-based closed bioregenerative life support experiment "Lunar Palace 365". ''Environ Microbiome''. 2022 Jan 26; '''17''' (1):4
Zirconium-Based Metal-Organic Framework Mixed-Matrix Membranes as Analytical Devices for the Trace Analysis of Complex Cosmetic Samples in the Assessment of Their Personal Care Product Content. Description: Gutierrez-Serpa, Adrian, et al. Zirconium-Based Metal-Organic Framework Mixed-Matrix Membranes as Analytical Devices for the Trace Analysis of Complex Cosmetic Samples in the Assessment of Their Personal Care Product Content. ''ACS Appl Mater Interfaces''. 2022 Jan 26; '''14''' (3):4510-4521
Inhalable antibiotic resistomes emitted from hospitals: metagenomic insights into bacterial hosts, clinical relevance, and environmental risks. Description: Wu, Dong, et al. Inhalable antibiotic resistomes emitted from hospitals: metagenomic insights into bacterial hosts, clinical relevance, and environmental risks. ''Microbiome''. 2022 Jan 27; '''10''' (1):19
Long-read metagenomic sequencing reveals shifts in associations of antibiotic resistance genes with mobile genetic elements from sewage to activated sludge. Description: Dai, Dongjuan, et al. Long-read metagenomic sequencing reveals shifts in associations of antibiotic resistance genes with mobile genetic elements from sewage to activated sludge. ''Microbiome''. 2022 Jan 29; '''10''' (1):20
Genomic insight into the scale specialization of the biological control agent Novius pumilus (Weise, 1892). Description: Tang, Xue-Fei, et al. Genomic insight into the scale specialization of the biological control agent Novius pumilus (Weise, 1892). ''BMC Genomics''. 2022 Jan 31; '''23''' (1):90
In-situ sequencing reveals the effect of storage on lacustrine sediment microbiome demographics and functionality. Description: Tennant, Richard K, et al. In-situ sequencing reveals the effect of storage on lacustrine sediment microbiome demographics and functionality. ''Environ Microbiome''. 2022 Jan 31; '''17''' (1):5
A comparative genomics examination of desiccation tolerance and sensitivity in two sister grass species. Description: Chavez Montes, Ricardo A, et al. A comparative genomics examination of desiccation tolerance and sensitivity in two sister grass species. ''Proc Natl Acad Sci U S A''. 2022 Feb 1; '''119''' (5):
Anti-infection mechanism of a novel dental implant made of titanium-copper (TiCu) alloy and its mechanism associated with oral microbiology. Description: Liu, Hui, et al. Anti-infection mechanism of a novel dental implant made of titanium-copper (TiCu) alloy and its mechanism associated with oral microbiology. ''Bioact Mater''. 2022 Feb; '''8''': 381-395
A transcriptome-based association study of growth, wood quality, and oleoresin traits in a slash pine breeding population. Description: Ding, Xianyin, et al. A transcriptome-based association study of growth, wood quality, and oleoresin traits in a slash pine breeding population. ''PLoS Genet''. 2022 Feb; '''18''' (2):e1010017
Multi-omics analyses of the ulcerative colitis gut microbiome link Bacteroides vulgatus proteases with disease severity. Description: Mills, Robert H, et al. Multi-omics analyses of the ulcerative colitis gut microbiome link Bacteroides vulgatus proteases with disease severity. ''Nat Microbiol''. 2022 Feb; '''7''' (2):262-276
Quantifying cumulative phenotypic and genomic evidence for procedural generation of metabolic network reconstructions. Description: Moutinho, Thomas J Jr, et al. Quantifying cumulative phenotypic and genomic evidence for procedural generation of metabolic network reconstructions. ''PLoS Comput Biol''. 2022 Feb; '''18''' (2):e1009341
Safety assessment and probiotic characteristics of Enterococcus lactis JDM1. Description: Fu, Xiaomei, et al. Safety assessment and probiotic characteristics of Enterococcus lactis JDM1. ''Microb Pathog''. 2022 Feb; '''163''': 105380
The phylogeny of the Anderson's White-bellied Rat (Niviventer andersoni) based on complete mitochondrial genomes. Description: Liu, Shu-Jing, et al. The phylogeny of the Anderson's White-bellied Rat (Niviventer andersoni) based on complete mitochondrial genomes. ''Ecol Evol''. 2022 Feb; '''12''' (3):e8663
Whole gut virome analysis of 476 Japanese revealed a link between phage and autoimmune disease. Description: Tomofuji, Yoshihiko, et al. Whole gut virome analysis of 476 Japanese revealed a link between phage and autoimmune disease. ''Ann Rheum Dis''. 2022 Feb; '''81''' (2):278-288
Chromosome-Level Genome Assembly of Anthidium xuezhongi Niu & Zhu, 2020 (Hymenoptera: Apoidea: Megachilidae: Anthidiini). Description: Zhang, Dan, et al. Chromosome-Level Genome Assembly of Anthidium xuezhongi Niu & Zhu, 2020 (Hymenoptera: Apoidea: Megachilidae: Anthidiini). ''Genome Biol Evol''. 2022 Feb 4; '''14''' (2):
Complete genome sequence of the kiwifruit bacterial canker pathogen Pseudomonas savastanoi strain MHT1. Description: Zhong, Mingzhao, et al. Complete genome sequence of the kiwifruit bacterial canker pathogen Pseudomonas savastanoi strain MHT1. ''BMC Microbiol''. 2022 Feb 4; '''22''' (1):44
Residual chlorine disrupts the microbial communities and spreads antibiotic resistance in freshwater. Description: Zhang, Zhenyan, et al. Residual chlorine disrupts the microbial communities and spreads antibiotic resistance in freshwater. ''J Hazard Mater''. 2022 Feb 5; '''423''' (Pt B):127152
Insights into the proteomic profile of newly harvested corn and metagenomic analysis of the broiler intestinal microbiota. Description: Yin, Dafei, et al. Insights into the proteomic profile of newly harvested corn and metagenomic analysis of the broiler intestinal microbiota. ''J Anim Sci Biotechnol''. 2022 Feb 9; '''13''' (1):26
In Silico Approach Gives Insights into Ig-like Fold Containing Proteins in Vibrio parahaemolyticus: A Focus on the Fibrillar Adhesins. Description: Wang, Dan, et al. In Silico Approach Gives Insights into Ig-like Fold Containing Proteins in Vibrio parahaemolyticus: A Focus on the Fibrillar Adhesins. ''Toxins (Basel)''. 2022 Feb 10; '''14''' (2):
Chromosome-level genome assembly of Aristolochia contorta provides insights into the biosynthesis of benzylisoquinoline alkaloids and aristolochic acids. Description: Cui, Xinyun, et al. Chromosome-level genome assembly of Aristolochia contorta provides insights into the biosynthesis of benzylisoquinoline alkaloids and aristolochic acids. ''Hortic Res''. 2022 Feb 11;
Novel Insights into the Stemness and Immune Privilege of Mesenchymal Stem Cells from Human Wharton Jelly by Single-Cell RNA Sequencing. Description: Leng, Zikuan, et al. Novel Insights into the Stemness and Immune Privilege of Mesenchymal Stem Cells from Human Wharton Jelly by Single-Cell RNA Sequencing. ''Med Sci Monit''. 2022 Feb 14; '''28''': e934660
Design of new bis-triazolyl structure for identification of inhibitory activity on COVID-19 main protease by molecular docking approach. Description: Singh, Gurjaspreet, et al. Design of new bis-triazolyl structure for identification of inhibitory activity on COVID-19 main protease by molecular docking approach. ''J Mol Struct''. 2022 Feb 15; '''1250''': 131858
Genome Informatics and Machine Learning-Based Identification of Antimicrobial Resistance-Encoding Features and Virulence Attributes in Escherichia coli Genomes Representing Globally Prevalent Lineages, Including High-Risk Clonal Complexes. Description: Shaik, Sabiha, et al. Genome Informatics and Machine Learning-Based Identification of Antimicrobial Resistance-Encoding Features and Virulence Attributes in Escherichia coli Genomes Representing Globally Prevalent Lineages, Including High-Risk Clonal Complexes. ''mBio''. 2022 Feb 15; e0379621
Gut metagenome associations with extensive digital health data in a volunteer-based Estonian microbiome cohort. Description: Aasmets, Oliver, et al. Gut metagenome associations with extensive digital health data in a volunteer-based Estonian microbiome cohort. ''Nat Commun''. 2022 Feb 15; '''13''' (1):869
The dynamic trophic architecture of open-ocean protist communities revealed through machine-guided metatranscriptomics. Description: Lambert, Bennett S, et al. The dynamic trophic architecture of open-ocean protist communities revealed through machine-guided metatranscriptomics. ''Proc Natl Acad Sci U S A''. 2022 Feb 15; '''119''' (7):
Integrated meta-omics reveals new ruminal microbial features associated with feed efficiency in dairy cattle. Description: Xue, Ming-Yuan, et al. Integrated meta-omics reveals new ruminal microbial features associated with feed efficiency in dairy cattle. ''Microbiome''. 2022 Feb 16; '''10''' (1):32
METABOLIC: high-throughput profiling of microbial genomes for functional traits, metabolism, biogeochemistry, and community-scale functional networks. Description: Zhou, Zhichao, et al. METABOLIC: high-throughput profiling of microbial genomes for functional traits, metabolism, biogeochemistry, and community-scale functional networks. ''Microbiome''. 2022 Feb 16; '''10''' (1):33
A cattle graph genome incorporating global breed diversity. Description: Talenti, A, et al. A cattle graph genome incorporating global breed diversity. ''Nat Commun''. 2022 Feb 17; '''13''' (1):910
Thermophiles and carbohydrate-active enzymes (CAZymes) in biofilm microbial consortia that decompose lignocellulosic plant litters at high temperatures. Description: Liew, Kok Jun, et al. Thermophiles and carbohydrate-active enzymes (CAZymes) in biofilm microbial consortia that decompose lignocellulosic plant litters at high temperatures. ''Sci Rep''. 2022 Feb 18; '''12''' (1):2850
Tetra-Substituted p-Tert-Butylcalix[4]Arene with Phosphoryl and Salicylamide Functional Groups: Synthesis, Complexation and Selective Extraction of f-Element Cations. Description: Glasneck, Florian, et al. Tetra-Substituted p-Tert-Butylcalix[4]Arene with Phosphoryl and Salicylamide Functional Groups: Synthesis, Complexation and Selective Extraction of f-Element Cations. ''Chemistry''. 2022 Feb 19; '''28''' (11):e202104301
Nuclear genome of Bulinus truncatus, an intermediate host of the carcinogenic human blood fluke Schistosoma haematobium. Description: Young, Neil D, et al. Nuclear genome of Bulinus truncatus, an intermediate host of the carcinogenic human blood fluke Schistosoma haematobium. ''Nat Commun''. 2022 Feb 21; '''13''' (1):977
An estimate of the deepest branches of the tree of life from ancient vertically evolving genes. Description: Moody, Edmund R R, et al. An estimate of the deepest branches of the tree of life from ancient vertically evolving genes. ''Elife''. 2022 Feb 22; '''11''':
BugSplit enables genome-resolved metagenomics through highly accurate taxonomic binning of metagenomic assemblies. Description: Chandrakumar, Induja, et al. BugSplit enables genome-resolved metagenomics through highly accurate taxonomic binning of metagenomic assemblies. ''Commun Biol''. 2022 Feb 22; '''5''' (1):151
Using AnnoTree to Get More Assignments, Faster, in DIAMOND+MEGAN Microbiome Analysis. Description: Gautam, Anupam, et al. Using AnnoTree to Get More Assignments, Faster, in DIAMOND+MEGAN Microbiome Analysis. ''mSystems''. 2022 Feb 22; '''7''' (1):e0140821
Comparative Genome Analysis Reveals Phylogenetic Identity of Bacillus velezensis HNA3 and Genomic Insights into Its Plant Growth Promotion and Biocontrol Effects. Description: Zaid, Doaa S, et al. Comparative Genome Analysis Reveals Phylogenetic Identity of Bacillus velezensis HNA3 and Genomic Insights into Its Plant Growth Promotion and Biocontrol Effects. ''Microbiol Spectr''. 2022 Feb 23; '''10''' (1):e0216921
Gut Microbiome Characteristics in feral and domesticated horses from different geographic locations. Description: Ang, Li, et al. Gut Microbiome Characteristics in feral and domesticated horses from different geographic locations. ''Commun Biol''. 2022 Feb 25; '''5''' (1):172
Chromosome-level genome assembly of a xerophytic plant, Haloxylon ammodendron. Description: Wang, Mingcheng, et al. Chromosome-level genome assembly of a xerophytic plant, Haloxylon ammodendron. ''DNA Res''. 2022 Feb 27; '''29''' (2):
Constructing benchmark test sets for biological sequence analysis using independent set algorithms. Description: Petti, Samantha, et al. Constructing benchmark test sets for biological sequence analysis using independent set algorithms. ''PLoS Comput Biol''. 2022 Mar; '''18''' (3):e1009492
Dietary licorice enhances in vivo cadmium detoxification and modulates gut microbial metabolism in mice. Description: Zheng, Xin, et al. Dietary licorice enhances in vivo cadmium detoxification and modulates gut microbial metabolism in mice. ''Imeta''. 2022 Mar; '''1''' (1):e7
Distinct hepatic immunological patterns are associated with the progression or inhibition of hepatocellular carcinoma. Description: Mirshahi, Faridoddin, et al. Distinct hepatic immunological patterns are associated with the progression or inhibition of hepatocellular carcinoma. ''Cell Rep''. 2022 Mar 1; '''38''' (9):110454
Experimental evolution links post-transcriptional regulation to Leishmania fitness gain. Description: Piel, Laura, et al. Experimental evolution links post-transcriptional regulation to Leishmania fitness gain. ''PLoS Pathog''. 2022 Mar; '''18''' (3):e1010375
Finding the right fit: evaluation of short-read and long-read sequencing approaches to maximize the utility of clinical microbiome data. Description: Gehrig, Jeanette L, et al. Finding the right fit: evaluation of short-read and long-read sequencing approaches to maximize the utility of clinical microbiome data. ''Microb Genom''. 2022 Mar; '''8''' (3):
Hydrodynamic disturbance controls microbial community assembly and biogeochemical processes in coastal sediments. Description: Chen, Ya-Jou, et al. Hydrodynamic disturbance controls microbial community assembly and biogeochemical processes in coastal sediments. ''ISME J''. 2022 Mar; '''16''' (3):750-763
Insight into the ecology of vaginal bacteria through integrative analyses of metagenomic and metatranscriptomic data. Description: France, Michael T, et al. Insight into the ecology of vaginal bacteria through integrative analyses of metagenomic and metatranscriptomic data. ''Genome Biol''. 2022 Mar 1; '''23''' (1):66
Metagenomic analysis of microbial communities and antibiotic resistance genes in spoiled household chemicals. Description: Zhou, Gang, et al. Metagenomic analysis of microbial communities and antibiotic resistance genes in spoiled household chemicals. ''Chemosphere''. 2022 Mar; '''291''' (Pt 1):132766
Methods for the targeted sequencing and analysis of integrons and their gene cassettes from complex microbial communities. Description: Ghaly, Timothy M, et al. Methods for the targeted sequencing and analysis of integrons and their gene cassettes from complex microbial communities. ''Microb Genom''. 2022 Mar; '''8''' (3):
Microbial Consortiums of Putative Degraders of Low-Density Polyethylene-Associated Compounds in the Ocean. Description: Pinto, Maria, et al. Microbial Consortiums of Putative Degraders of Low-Density Polyethylene-Associated Compounds in the Ocean. ''mSystems''. 2022 Mar 1; e0141521
PlasticDB: a database of microorganisms and proteins linked to plastic biodegradation. Description: Gambarini, Victor, et al. PlasticDB: a database of microorganisms and proteins linked to plastic biodegradation. ''Database (Oxford)''. 2022 Mar 1; '''2022''':
Taxonomy of Rhizobiaceae revisited: proposal of a new framework for genus delimitation. Description: Kuzmanovic, Nemanja, et al. Taxonomy of Rhizobiaceae revisited: proposal of a new framework for genus delimitation. ''Int J Syst Evol Microbiol''. 2022 Mar; '''72''' (3):
Transitional genomes and nutritional role reversals identified for dual symbionts of adelgids (Aphidoidea: Adelgidae). Description: Dial, Dustin T, et al. Transitional genomes and nutritional role reversals identified for dual symbionts of adelgids (Aphidoidea: Adelgidae). ''ISME J''. 2022 Mar; '''16''' (3):642-654
Host Adaptation in Legionellales Is 1.9 Ga, Coincident with Eukaryogenesis. Description: Hugoson, Eric, et al. Host Adaptation in Legionellales Is 1.9 Ga, Coincident with Eukaryogenesis. ''Mol Biol Evol''. 2022 Mar 2; '''39''' (3):
Changes to gut amino acid transporters and microbiome associated with increased E/I ratio in Chd8(+/-) mouse model of ASD-like behavior. Description: Yu, You, et al. Changes to gut amino acid transporters and microbiome associated with increased E/I ratio in Chd8(+/-) mouse model of ASD-like behavior. ''Nat Commun''. 2022 Mar 3; '''13''' (1):1151
Extensive metagenomic analysis of the porcine gut resistome to identify indicators reflecting antimicrobial resistance. Description: Zhou, Yunyan, et al. Extensive metagenomic analysis of the porcine gut resistome to identify indicators reflecting antimicrobial resistance. ''Microbiome''. 2022 Mar 4; '''10''' (1):39
Host-microbiome protein-protein interactions capture disease-relevant pathways. Description: Zhou, Hao, et al. Host-microbiome protein-protein interactions capture disease-relevant pathways. ''Genome Biol''. 2022 Mar 4; '''23''' (1):72
The microbiome and resistome of apple fruits alter in the post-harvest period. Description: Wassermann, Birgit, et al. The microbiome and resistome of apple fruits alter in the post-harvest period. ''Environ Microbiome''. 2022 Mar 7; '''17''' (1):10
A mouse model of occult intestinal colonization demonstrating antibiotic-induced outgrowth of carbapenem-resistant Enterobacteriaceae. Description: Sim, Choon K, et al. A mouse model of occult intestinal colonization demonstrating antibiotic-induced outgrowth of carbapenem-resistant Enterobacteriaceae. ''Microbiome''. 2022 Mar 10; '''10''' (1):43
Exposure to Trypanosoma parasites induces changes in the microbiome of the Chagas disease vector Rhodnius prolixus. Description: Eberhard, Fanny E, et al. Exposure to Trypanosoma parasites induces changes in the microbiome of the Chagas disease vector Rhodnius prolixus. ''Microbiome''. 2022 Mar 10; '''10''' (1):45
Genome-wide identification and characterization of Fusarium circinatum-responsive lncRNAs in Pinus radiata. Description: Zamora-Ballesteros, Cristina, et al. Genome-wide identification and characterization of Fusarium circinatum-responsive lncRNAs in Pinus radiata. ''BMC Genomics''. 2022 Mar 10; '''23''' (1):194
RdRp-based sensitive taxonomic classification of RNA viruses for metagenomic data. Description: Tang, Xubo, et al. RdRp-based sensitive taxonomic classification of RNA viruses for metagenomic data. ''Brief Bioinform''. 2022 Mar 10; '''23''' (2):
New Insights into the Toxin Diversity and Antimicrobial Activity of the "Fire Coral" Millepora complanata. Description: Hernandez-Elizarraga, Victor Hugo, et al. New Insights into the Toxin Diversity and Antimicrobial Activity of the "Fire Coral" Millepora complanata. ''Toxins (Basel)''. 2022 Mar 14; '''14''' (3):
Superconducting YAu3Si and Antiferromagnetic GdAu3Si with an Interpenetrating Framework Structure Built from 16-Atom Polyhedra. Description: Gebresenbut, Girma Hailu, et al. Superconducting YAu3Si and Antiferromagnetic GdAu3Si with an Interpenetrating Framework Structure Built from 16-Atom Polyhedra. ''Inorg Chem''. 2022 Mar 14; '''61''' (10):4322-4334
Phosphonate production by marine microbes: Exploring new sources and potential function. Description: Acker, Marianne, et al. Phosphonate production by marine microbes: Exploring new sources and potential function. ''Proc Natl Acad Sci U S A''. 2022 Mar 15; '''119''' (11):e2113386119
Identifying biomarkers of the gut bacteria, bacteriophages and serum metabolites associated with three weaning periods in piglets. Description: Xiong, Xinwei, et al. Identifying biomarkers of the gut bacteria, bacteriophages and serum metabolites associated with three weaning periods in piglets. ''BMC Vet Res''. 2022 Mar 17; '''18''' (1):104
Species composition and overall diversity are significantly correlated between the tongue coating and gastric fluid microbiomes in gastritis patients. Description: Cui, Jiaxing, et al. Species composition and overall diversity are significantly correlated between the tongue coating and gastric fluid microbiomes in gastritis patients. ''BMC Med Genomics''. 2022 Mar 17; '''15''' (1):60
Structure and function of the soil microbiome underlying N2O emissions from global wetlands. Description: Bahram, Mohammad, et al. Structure and function of the soil microbiome underlying N2O emissions from global wetlands. ''Nat Commun''. 2022 Mar 17; '''13''' (1):1430
Transcriptome Sequencing Highlights the Regulatory Role of DNA Methylation in Immune-Related Genes' Expression of Chinese Oak Silkworm, Antheraea pernyi. Description: Kausar, Saima, et al. Transcriptome Sequencing Highlights the Regulatory Role of DNA Methylation in Immune-Related Genes' Expression of Chinese Oak Silkworm, Antheraea pernyi. ''Insects''. 2022 Mar 17; '''13''' (3):
In silico evaluation of a targeted metaproteomics strategy for broad screening of cellulolytic enzyme capacities in anaerobic microbiome bioreactors. Description: Villalobos Solis, Manuel I, et al. In silico evaluation of a targeted metaproteomics strategy for broad screening of cellulolytic enzyme capacities in anaerobic microbiome bioreactors. ''Biotechnol Biofuels Bioprod''. 2022 Mar 18; '''15''' (1):32
Microbiomes in the Challenger Deep slope and bottom-axis sediments. Description: Zhou, Ying-Li, et al. Microbiomes in the Challenger Deep slope and bottom-axis sediments. ''Nat Commun''. 2022 Mar 21; '''13''' (1):1515
Differential Response of Bacterial Microdiversity to Simulated Global Change. Description: Scales, N C, et al. Differential Response of Bacterial Microdiversity to Simulated Global Change. ''Appl Environ Microbiol''. 2022 Mar 22; '''88''' (6):e0242921
Genome wide study of cysteine rich receptor like proteins in Gossypium sp. Description: Hussain, Athar, et al. Genome wide study of cysteine rich receptor like proteins in Gossypium sp. ''Sci Rep''. 2022 Mar 22; '''12''' (1):4885
Metabolome and transcriptome analyses identify the plant immunity systems that facilitate sesquiterpene and lignan biosynthesis in Syringa pinnatifolia Hemsl. Description: Gao, Jiaqi, et al. Metabolome and transcriptome analyses identify the plant immunity systems that facilitate sesquiterpene and lignan biosynthesis in Syringa pinnatifolia Hemsl. ''BMC Plant Biol''. 2022 Mar 22; '''22''' (1):132
Ethylmalonyl-CoA pathway involved in polyhydroxyvalerate synthesis in Candidatus Contendobacter. Description: Zhao, Chen, et al. Ethylmalonyl-CoA pathway involved in polyhydroxyvalerate synthesis in Candidatus Contendobacter. ''AMB Express''. 2022 Mar 25; '''12''' (1):39
MicroRNA-mediated post-transcriptional regulation of Pinus pinaster response and resistance to pinewood nematode. Description: Modesto, Ines, et al. MicroRNA-mediated post-transcriptional regulation of Pinus pinaster response and resistance to pinewood nematode. ''Sci Rep''. 2022 Mar 25; '''12''' (1):5160
Genomic epidemiology reveals the impact of national and international restrictions measures on the SARS-CoV-2 epidemic in Brazil. Description: Giovanetti, Marta, et al. Genomic epidemiology reveals the impact of national and international restrictions measures on the SARS-CoV-2 epidemic in Brazil. ''medRxiv''. 2022 Mar 28;
The virota and its transkingdom interactions in the healthy infant gut. Description: Beller, Leen, et al. The virota and its transkingdom interactions in the healthy infant gut. ''Proc Natl Acad Sci U S A''. 2022 Mar 29; '''119''' (13):e2114619119
Digital plasmonic nanobubble detection for rapid and ultrasensitive virus diagnostics. Description: Liu, Yaning, et al. Digital plasmonic nanobubble detection for rapid and ultrasensitive virus diagnostics. ''Nat Commun''. 2022 Mar 30; '''13''' (1):1687
Phylogenomic classification and synteny network analyses deciphered the evolutionary landscape of aldo-keto reductase (AKR) gene superfamily in the plant kingdom. Description: Krishnamurthy, Panneerselvam, et al. Phylogenomic classification and synteny network analyses deciphered the evolutionary landscape of aldo-keto reductase (AKR) gene superfamily in the plant kingdom. ''Gene''. 2022 Mar 30; '''816''': 146169
Efficient Microcystis removal and sulfonamide-resistance gene propagation mitigation by constructed wetlands and functional genes analysis. Description: Wang, Bo, et al. Efficient Microcystis removal and sulfonamide-resistance gene propagation mitigation by constructed wetlands and functional genes analysis. ''Chemosphere''. 2022 Apr; '''292''': 133481
Fungal dye-decolorizing peroxidase diversity: roles in either intra- or extracellular processes. Description: Adamo, Martino, et al. Fungal dye-decolorizing peroxidase diversity: roles in either intra- or extracellular processes. ''Appl Microbiol Biotechnol''. 2022 Apr; '''106''' (8):2993-3007
Genomes of leafy and leafless Platanthera orchids illuminate the evolution of mycoheterotrophy. Description: Li, Ming-He, et al. Genomes of leafy and leafless Platanthera orchids illuminate the evolution of mycoheterotrophy. ''Nat Plants''. 2022 Apr; '''8''' (4):373-388
Transcriptional responses of Trichodesmium to natural inverse gradients of Fe and P availability. Description: Cerdan-Garcia, E, et al. Transcriptional responses of Trichodesmium to natural inverse gradients of Fe and P availability. ''ISME J''. 2022 Apr; '''16''' (4):1055-1064
Porcine gut microbiota in mediating host metabolic adaptation to cold stress. Description: Zhang, Yu, et al. Porcine gut microbiota in mediating host metabolic adaptation to cold stress. ''NPJ Biofilms Microbiomes''. 2022 Apr 5; '''8''' (1):18
Inter-species Metabolic Interactions in an In-vitro Minimal Human Gut Microbiome of Core Bacteria. Description: Shetty, Sudarshan A, et al. Inter-species Metabolic Interactions in an In-vitro Minimal Human Gut Microbiome of Core Bacteria. ''NPJ Biofilms Microbiomes''. 2022 Apr 8; '''8''' (1):21
Genome-Wide Assessment of Stress-Associated Genes in Bifidobacteria. Description: Schopping, Marie, et al. Genome-Wide Assessment of Stress-Associated Genes in Bifidobacteria. ''Appl Environ Microbiol''. 2022 Apr 12; '''88''' (7):e0225121
Chronic activation of cardiac Atg-5 and pancreatic Atg-7 by intermittent fasting alleviates acute myocardial infarction in old rats. Description: El Agaty, Sahar Mohamed, et al. Chronic activation of cardiac Atg-5 and pancreatic Atg-7 by intermittent fasting alleviates acute myocardial infarction in old rats. ''Egypt Heart J''. 2022 Apr 13; '''74''' (1):31
The genomic basis of host and vector specificity in non-pathogenic trypanosomatids. Description: Oldrieve, Guy R, et al. The genomic basis of host and vector specificity in non-pathogenic trypanosomatids. ''Biol Open''. 2022 Apr 15; '''11''' (4):
Structural Phase Transitions in closo-Dicarbadodecaboranes C2B10H12. Description: Brighi, Matteo, et al. Structural Phase Transitions in closo-Dicarbadodecaboranes C2B10H12. ''Inorg Chem''. 2022 Apr 18; '''61''' (15):5813-5823
Comprehensive Genomic Analysis of Marine Strain Streptomyces sp. 891, an Excellent Producer of Chrysomycin A with Therapeutic Potential. Description: Hu, Xu, et al. Comprehensive Genomic Analysis of Marine Strain Streptomyces sp. 891, an Excellent Producer of Chrysomycin A with Therapeutic Potential. ''Mar Drugs''. 2022 Apr 24; '''20''' (5):
Shotgun metagenomic sequencing revealed the prebiotic potential of a grain-based diet in mice. Description: Jangid, Aditi, et al. Shotgun metagenomic sequencing revealed the prebiotic potential of a grain-based diet in mice. ''Sci Rep''. 2022 Apr 25; '''12''' (1):6748
Entamoeba histolytica EHD1 Is Involved in Mitosome-Endosome Contact. Description: Santos, Herbert J, et al. Entamoeba histolytica EHD1 Is Involved in Mitosome-Endosome Contact. ''mBio''. 2022 Apr 26; '''13''' (2):e0384921
Functional Traits Resolve Mechanisms Governing the Assembly and Distribution of Nitrogen-Cycling Microbial Communities in the Global Ocean. Description: Song, Wen, et al. Functional Traits Resolve Mechanisms Governing the Assembly and Distribution of Nitrogen-Cycling Microbial Communities in the Global Ocean. ''mBio''. 2022 Apr 26; '''13''' (2):e0383221
Murine Gut Microbiome Meta-analysis Reveals Alterations in Carbohydrate Metabolism in Response to Aging. Description: You, Xiaomeng, et al. Murine Gut Microbiome Meta-analysis Reveals Alterations in Carbohydrate Metabolism in Response to Aging. ''mSystems''. 2022 Apr 26; '''7''' (2):e0124821
Phylogeny-Aware Analysis of Metagenome Community Ecology Based on Matched Reference Genomes while Bypassing Taxonomy. Description: Zhu, Qiyun, et al. Phylogeny-Aware Analysis of Metagenome Community Ecology Based on Matched Reference Genomes while Bypassing Taxonomy. ''mSystems''. 2022 Apr 26; '''7''' (2):e0016722
Quantifying and Cataloguing Unknown Sequences within Human Microbiomes. Description: Modha, Sejal, et al. Quantifying and Cataloguing Unknown Sequences within Human Microbiomes. ''mSystems''. 2022 Apr 26; '''7''' (2):e0146821
The CIAMIB: a Large and Metabolically Diverse Collection of Inflammation-Associated Bacteria from the Murine Gut. Description: Wong, Erin Oi-Yan, et al. The CIAMIB: a Large and Metabolically Diverse Collection of Inflammation-Associated Bacteria from the Murine Gut. ''mBio''. 2022 Apr 26; '''13''' (2):e0294921
Characterization of the Ocular Surface Microbiome in Keratitis Patients after Repeated Ophthalmic Antibiotic Exposure. Description: Kang, Yutong, et al. Characterization of the Ocular Surface Microbiome in Keratitis Patients after Repeated Ophthalmic Antibiotic Exposure. ''Microbiol Spectr''. 2022 Apr 27; '''10''' (2):e0216221
Classification of 27 Corynebacterium kroppenstedtii-Like Isolates Associated with Mastitis in China and Descriptions of C. parakroppenstedtii sp. nov. and C. pseudokroppenstedtii sp. nov. Description: Luo, Qiang, et al. Classification of 27 Corynebacterium kroppenstedtii-Like Isolates Associated with Mastitis in China and Descriptions of C. parakroppenstedtii sp. nov. and C. pseudokroppenstedtii sp. nov. ''Microbiol Spectr''. 2022 Apr 27; '''10''' (2):e0137221
Contributions of Human-Associated Archaeal Metabolites to Tumor Microenvironment and Carcinogenesis. Description: Cai, Mingwei, et al. Contributions of Human-Associated Archaeal Metabolites to Tumor Microenvironment and Carcinogenesis. ''Microbiol Spectr''. 2022 Apr 27; '''10''' (2):e0236721
Evaluation of Host Depletion and Extraction Methods for Shotgun Metagenomic Analysis of Bovine Vaginal Samples. Description: Ong, Chian Teng, et al. Evaluation of Host Depletion and Extraction Methods for Shotgun Metagenomic Analysis of Bovine Vaginal Samples. ''Microbiol Spectr''. 2022 Apr 27; '''10''' (2):e0041221
Groundcovers and Rain Shelters Alter Co-Occurrence Patterns among Ground Beetle Communities in an Organic Raspberry Crop. Description: Moreau, Gaetan, et al. Groundcovers and Rain Shelters Alter Co-Occurrence Patterns among Ground Beetle Communities in an Organic Raspberry Crop. ''Insects''. 2022 Apr 27; '''13''' (5):
Positive Interventional Effect of Engineered Butyrate-Producing Bacteria on Metabolic Disorders and Intestinal Flora Disruption in Obese Mice. Description: Wang, Lina, et al. Positive Interventional Effect of Engineered Butyrate-Producing Bacteria on Metabolic Disorders and Intestinal Flora Disruption in Obese Mice. ''Microbiol Spectr''. 2022 Apr 27; '''10''' (2):e0114721
Simultaneous Hospital Outbreaks of New Delhi Metallo-beta-Lactamase-Producing Enterobacterales Unraveled Using Whole-Genome Sequencing. Description: Lo, Stephane, et al. Simultaneous Hospital Outbreaks of New Delhi Metallo-beta-Lactamase-Producing Enterobacterales Unraveled Using Whole-Genome Sequencing. ''Microbiol Spectr''. 2022 Apr 27; '''10''' (2):e0228721
A chromosome-level reference genome of Ensete glaucum gives insight into diversity and chromosomal and repetitive sequence evolution in the Musaceae. Description: Wang, Ziwei, et al. A chromosome-level reference genome of Ensete glaucum gives insight into diversity and chromosomal and repetitive sequence evolution in the Musaceae. ''Gigascience''. 2022 Apr 30; '''11''':
Slope aspect affects the soil microbial communities in karst tiankeng negative landforms. Description: Jiang, Cong, et al. Slope aspect affects the soil microbial communities in karst tiankeng negative landforms. ''BMC Ecol Evol''. 2022 Apr 30; '''22''' (1):54
Annotating unknown species of urban microorganisms on a global scale unveils novel functional diversity and local environment association. Description: Wu, Jun, et al. Annotating unknown species of urban microorganisms on a global scale unveils novel functional diversity and local environment association. ''Environ Res''. 2022 May 1; '''207''': 112183
'Candidatus Mellornella promiscua' n. gen. n. sp. (Alphaproteobacteria: Rickettsiales: Anaplasmataceae): An intracytoplasmic, hepatopancreatic, pathogen of the flatback mud crab, Eurypanopeus depressus. Description: Bojko, Jamie, et al. 'Candidatus Mellornella promiscua' n. gen. n. sp. (Alphaproteobacteria: Rickettsiales: Anaplasmataceae): An intracytoplasmic, hepatopancreatic, pathogen of the flatback mud crab, Eurypanopeus depressus. ''J Invertebr Pathol''. 2022 May; '''190''': 107737
Carbon assimilating fungi from surface ocean to subseafloor revealed by coupled phylogenetic and stable isotope analysis. Description: Orsi, William D, et al. Carbon assimilating fungi from surface ocean to subseafloor revealed by coupled phylogenetic and stable isotope analysis. ''ISME J''. 2022 May; '''16''' (5):1245-1261
Comparative Transcriptome Analysis Reveals Molecular Insights in Overwintering Monochamus alternatus (Coleoptera: Cerambycidae). Description: Li, Hui, et al. Comparative Transcriptome Analysis Reveals Molecular Insights in Overwintering Monochamus alternatus (Coleoptera: Cerambycidae). ''J Insect Sci''. 2022 May 1; '''22''' (3):
Into the darkness: the ecologies of novel 'microbial dark matter' phyla in an Antarctic lake. Description: Williams, Timothy J, et al. Into the darkness: the ecologies of novel 'microbial dark matter' phyla in an Antarctic lake. ''Environ Microbiol''. 2022 May; '''24''' (5):2576-2603
Metagenomics Analysis to Investigate the Microbial Communities and Their Functional Profile During Cyanobacterial Blooms in Lake Varese. Description: Sanseverino, Isabella, et al. Metagenomics Analysis to Investigate the Microbial Communities and Their Functional Profile During Cyanobacterial Blooms in Lake Varese. ''Microb Ecol''. 2022 May; '''83''' (4):850-868
Organochlorine contamination enriches virus-encoded metabolism and pesticide degradation associated auxiliary genes in soil microbiomes. Description: Zheng, Xiaoxuan, et al. Organochlorine contamination enriches virus-encoded metabolism and pesticide degradation associated auxiliary genes in soil microbiomes. ''ISME J''. 2022 May; '''16''' (5):1397-1408
Precise genotyping of circular mobile elements from metagenomic data uncovers human-associated plasmids with recent common ancestors. Description: Shalon, Nitan, et al. Precise genotyping of circular mobile elements from metagenomic data uncovers human-associated plasmids with recent common ancestors. ''Genome Res''. 2022 May; '''32''' (5):986-1003
PTEN differentially regulates endocytosis, migration, and proliferation in the enteric protozoan parasite Entamoeba histolytica. Description: Kadri, Samia, et al. PTEN differentially regulates endocytosis, migration, and proliferation in the enteric protozoan parasite Entamoeba histolytica. ''PLoS Pathog''. 2022 May; '''18''' (5):e1010147
Seasonal variations in the composition and functional profiles of gut microbiota reflect dietary changes in plateau pikas. Description: Fan, Chao, et al. Seasonal variations in the composition and functional profiles of gut microbiota reflect dietary changes in plateau pikas. ''Integr Zool''. 2022 May; '''17''' (3):379-395
Type B and type A influenza polymerases have evolved distinct binding interfaces to recruit the RNA polymerase II CTD. Description: Krischuns, Tim, et al. Type B and type A influenza polymerases have evolved distinct binding interfaces to recruit the RNA polymerase II CTD. ''PLoS Pathog''. 2022 May; '''18''' (5):e1010328
A chromosome-scale genome assembly of the false clownfish, Amphiprion ocellaris. Description: Ryu, Taewoo, et al. A chromosome-scale genome assembly of the false clownfish, Amphiprion ocellaris. ''G3 (Bethesda)''. 2022 May 6; '''12''' (5):
Genomic features of the polyphagous cotton leafworm Spodoptera littoralis. Description: Wu, Chao, et al. Genomic features of the polyphagous cotton leafworm Spodoptera littoralis. ''BMC Genomics''. 2022 May 7; '''23''' (1):353
Microbial Activities and Selection from Surface Ocean to Subseafloor on the Namibian Continental Shelf. Description: Vuillemin, Aurele, et al. Microbial Activities and Selection from Surface Ocean to Subseafloor on the Namibian Continental Shelf. ''Appl Environ Microbiol''. 2022 May 10; '''88''' (9):e0021622
Parallel Optimization of Potency and Pharmacokinetics Leading to the Discovery of a Pyrrole Carboxamide ERK5 Kinase Domain Inhibitor. Description: Miller, Duncan C, et al. Parallel Optimization of Potency and Pharmacokinetics Leading to the Discovery of a Pyrrole Carboxamide ERK5 Kinase Domain Inhibitor. ''J Med Chem''. 2022 May 12; '''65''' (9):6513-6540
Adaptation of gut microbiome and host metabolic systems to lignocellulosic degradation in bamboo rats. Description: Xiao, Kangpeng, et al. Adaptation of gut microbiome and host metabolic systems to lignocellulosic degradation in bamboo rats. ''ISME J''. 2022 May 14;
mucG, mucH, and mucI Modulate Production of Mutanocyclin and Reutericyclins in Streptococcus mutans B04Sm5. Description: Baker, Jonathon L, et al. mucG, mucH, and mucI Modulate Production of Mutanocyclin and Reutericyclins in Streptococcus mutans B04Sm5. ''J Bacteriol''. 2022 May 17; '''204''' (5):e0004222
Online Video Teletherapy Treatment of Obsessive-Compulsive Disorder Using Exposure and Response Prevention: Clinical Outcomes From a Retrospective Longitudinal Observational Study. Description: Feusner, Jamie D, et al. Online Video Teletherapy Treatment of Obsessive-Compulsive Disorder Using Exposure and Response Prevention: Clinical Outcomes From a Retrospective Longitudinal Observational Study. ''J Med Internet Res''. 2022 May 19; '''24''' (5):e36431
Lake microbiome and trophy fluctuations of the ancient hemp rettery. Description: Iwanska, Olga, et al. Lake microbiome and trophy fluctuations of the ancient hemp rettery. ''Sci Rep''. 2022 May 25; '''12''' (1):8846
A chromosome-level genome assembly of the pollinating fig wasp Valisia javana. Description: Chen, Lianfu, et al. A chromosome-level genome assembly of the pollinating fig wasp Valisia javana. ''DNA Res''. 2022 May 27; '''29''' (3):
FUNAGE-Pro: comprehensive web server for gene set enrichment analysis of prokaryotes. Description: de Jong, Anne, et al. FUNAGE-Pro: comprehensive web server for gene set enrichment analysis of prokaryotes. ''Nucleic Acids Res''. 2022 May 31;
Genomic and AntiSMASH Analyses of Marine-Sponge-Derived Strain Aspergillus niger L14 Unveiling Its Vast Potential of Secondary Metabolites Biosynthesis. Description: Wang, Ping, et al. Genomic and AntiSMASH Analyses of Marine-Sponge-Derived Strain Aspergillus niger L14 Unveiling Its Vast Potential of Secondary Metabolites Biosynthesis. ''J Fungi (Basel)''. 2022 May 31; '''8''' (6):
Biological manganese-dependent sulfide oxidation impacts elemental gradients in redox-stratified systems: indications from the Black Sea water column. Description: Henkel, J V, et al. Biological manganese-dependent sulfide oxidation impacts elemental gradients in redox-stratified systems: indications from the Black Sea water column. ''ISME J''. 2022 Jun; '''16''' (6):1523-1533
Cluster Compounds with Oxidised, Hexanuclear [Nb6 Cl(i) 12 I(a) 6 ](n-) Anions (n=2 or 3). Description: Schroder, Florian, et al. Cluster Compounds with Oxidised, Hexanuclear [Nb6 Cl(i) 12 I(a) 6 ](n-) Anions (n=2 or 3). ''ChemistryOpen''. 2022 Jun; '''11''' (6):e202200063
Comparison of gut microbiota compositions and corresponding genetic and metabolic features between guttate and plaque psoriasis by metagenomic sequencing. Description: Wang, Xiaoxu, et al. Comparison of gut microbiota compositions and corresponding genetic and metabolic features between guttate and plaque psoriasis by metagenomic sequencing. ''Microb Pathog''. 2022 Jun; '''167''': 105560
Easy efficient HDR-based targeted knock-in in Saccharomyces cerevisiae genome using CRISPR-Cas9 system. Description: Singh, Rajveer, et al. Easy efficient HDR-based targeted knock-in in Saccharomyces cerevisiae genome using CRISPR-Cas9 system. ''Bioengineered''. 2022 Jun; '''13''' (6):14857-14871
Genome evolution and diversity of wild and cultivated potatoes. Description: Tang, Die, et al. Genome evolution and diversity of wild and cultivated potatoes. ''Nature''. 2022 Jun; '''606''' (7914):535-541
GR13-type plasmids in Acinetobacter potentiate the accumulation and horizontal transfer of diverse accessory genes. Description: Moran, Robert A, et al. GR13-type plasmids in Acinetobacter potentiate the accumulation and horizontal transfer of diverse accessory genes. ''Microb Genom''. 2022 Jun; '''8''' (6):
Insights into plastic biodegradation: community composition and functional capabilities of the superworm (Zophobas morio) microbiome in styrofoam feeding trials. Description: Sun, Jiarui, et al. Insights into plastic biodegradation: community composition and functional capabilities of the superworm (Zophobas morio) microbiome in styrofoam feeding trials. ''Microb Genom''. 2022 Jun; '''8''' (6):
Metagenomic analysis further extends the role of Chloroflexi in fundamental biogeochemical cycles. Description: Narsing Rao, Manik Prabhu, et al. Metagenomic analysis further extends the role of Chloroflexi in fundamental biogeochemical cycles. ''Environ Res''. 2022 Jun; '''209''': 112888
Metagenomic assemblage genomes analyses reveal the polysaccharides hydrolyzing potential of marine group II euryarchaea. Description: Qu, Liping, et al. Metagenomic assemblage genomes analyses reveal the polysaccharides hydrolyzing potential of marine group II euryarchaea. ''Environ Res''. 2022 Jun; '''209''': 112865
Niche partitioning of the ubiquitous and ecologically relevant NS5 marine group. Description: Priest, Taylor, et al. Niche partitioning of the ubiquitous and ecologically relevant NS5 marine group. ''ISME J''. 2022 Jun; '''16''' (6):1570-1582
Novel viruses discovered in the transcriptomes of agnathan fish. Description: Mercer, Lewis K, et al. Novel viruses discovered in the transcriptomes of agnathan fish. ''J Fish Dis''. 2022 Jun; '''45''' (6):931-938
PHISDetector: A Tool to Detect Diverse In Silico Phage-host Interaction Signals for Virome Studies. Description: Zhou, Fengxia, et al. PHISDetector: A Tool to Detect Diverse In Silico Phage-host Interaction Signals for Virome Studies. ''Genomics Proteomics Bioinformatics''. 2022 Jun; '''20''' (3):508-523
Quantifying microcalcification activity in the thoracic aorta. Description: Fletcher, Alexander J, et al. Quantifying microcalcification activity in the thoracic aorta. ''J Nucl Cardiol''. 2022 Jun; '''29''' (3):1372-1385
Soil phytoremediation reveals alteration in soil microbial metabolic activities along time gradient of cover crop mulching. Description: Wang, Yuanji, et al. Soil phytoremediation reveals alteration in soil microbial metabolic activities along time gradient of cover crop mulching. ''Environ Res''. 2022 Jun; '''209''': 112884
Solvent Selective Effect Occurs in Iodinated Adamantanone Ferroelectrics. Description: Xu, Lei, et al. Solvent Selective Effect Occurs in Iodinated Adamantanone Ferroelectrics. ''Adv Sci (Weinh)''. 2022 Jun; '''9''' (18):e2201702
Targeting MuRF1 by small molecules in a HFpEF rat model improves myocardial diastolic function and skeletal muscle contractility. Description: Adams, Volker, et al. Targeting MuRF1 by small molecules in a HFpEF rat model improves myocardial diastolic function and skeletal muscle contractility. ''J Cachexia Sarcopenia Muscle''. 2022 Jun; '''13''' (3):1565-1581
The novel genus, 'Candidatus Phosphoribacter', previously identified as Tetrasphaera, is the dominant polyphosphate accumulating lineage in EBPR wastewater treatment plants worldwide. Description: Singleton, C M, et al. The novel genus, 'Candidatus Phosphoribacter', previously identified as Tetrasphaera, is the dominant polyphosphate accumulating lineage in EBPR wastewater treatment plants worldwide. ''ISME J''. 2022 Jun; '''16''' (6):1605-1616
The Role of Acetate Kinase in the Human Parasite Entamoeba histolytica. Description: Dang, Thanh, et al. The Role of Acetate Kinase in the Human Parasite Entamoeba histolytica. ''Parasitologia''. 2022 Jun; '''2''' (2):147-159
Unraveling microbe-mediated degradation of lignin and lignin-derived aromatic fragments in the Pearl River Estuary sediments. Description: Li, Jia-Ling, et al. Unraveling microbe-mediated degradation of lignin and lignin-derived aromatic fragments in the Pearl River Estuary sediments. ''Chemosphere''. 2022 Jun; '''296''': 133995
Complete genome sequence of the Pogostemon cablin bacterial wilt pathogen Ralstonia solanacearum strain SY1. Description: Sun, Yunhao, et al. Complete genome sequence of the Pogostemon cablin bacterial wilt pathogen Ralstonia solanacearum strain SY1. ''Genes Genomics''. 2022 Jun 7;
Functional and phylogenetic analyses of camel rumen microbiota associated with different lignocellulosic substrates. Description: Gharechahi, Javad, et al. Functional and phylogenetic analyses of camel rumen microbiota associated with different lignocellulosic substrates. ''NPJ Biofilms Microbiomes''. 2022 Jun 8; '''8''' (1):46
Structured Framework and Genome Analysis of Magnaporthe grisea Inciting Pearl Millet Blast Disease Reveals Versatile Metabolic Pathways, Protein Families, and Virulence Factors. Description: Reddy, Bhaskar, et al. Structured Framework and Genome Analysis of Magnaporthe grisea Inciting Pearl Millet Blast Disease Reveals Versatile Metabolic Pathways, Protein Families, and Virulence Factors. ''J Fungi (Basel)''. 2022 Jun 9; '''8''' (6):
Antibiotic-Induced Treatments Reveal Stress-Responsive Gene Expression in the Endangered Lichen Lobaria pulmonaria. Description: Chavarria-Pizarro, Tania, et al. Antibiotic-Induced Treatments Reveal Stress-Responsive Gene Expression in the Endangered Lichen Lobaria pulmonaria. ''J Fungi (Basel)''. 2022 Jun 12; '''8''' (6):
Bacillus licheniformis-fermented products and enramycin differentially modulate microbiota and antibiotic resistome in the cecal digesta of broilers. Description: Chen, Ying-Chu, et al. Bacillus licheniformis-fermented products and enramycin differentially modulate microbiota and antibiotic resistome in the cecal digesta of broilers. ''Poult Sci''. 2022 Jun 15; '''101''' (9):102010
Identification of Pathogenicity-Related Effector Proteins and the Role of Piwsc1 in the Virulence of Penicillium italicum on Citrus Fruits. Description: Li, Xiaoying, et al. Identification of Pathogenicity-Related Effector Proteins and the Role of Piwsc1 in the Virulence of Penicillium italicum on Citrus Fruits. ''J Fungi (Basel)''. 2022 Jun 20; '''8''' (6):
Transcriptome of the synganglion in the tick Ixodes ricinus and evolution of the cys-loop ligand-gated ion channel family in ticks. Description: Rispe, Claude, et al. Transcriptome of the synganglion in the tick Ixodes ricinus and evolution of the cys-loop ligand-gated ion channel family in ticks. ''BMC Genomics''. 2022 Jun 23; '''23''' (1):463
Gut microbiota alternation under the intestinal epithelium-specific knockout of mouse Piga gene. Description: Jangid, Aditi, et al. Gut microbiota alternation under the intestinal epithelium-specific knockout of mouse Piga gene. ''Sci Rep''. 2022 Jun 25; '''12''' (1):10812
Comparative Genomics Unveils the Habitat Adaptation and Metabolic Profiles of Clostridium in an Artificial Ecosystem for Liquor Production. Description: Fang, Guan-Yu, et al. Comparative Genomics Unveils the Habitat Adaptation and Metabolic Profiles of Clostridium in an Artificial Ecosystem for Liquor Production. ''mSystems''. 2022 Jun 28; '''7''' (3):e0029722
Differentiated Evolutionary Strategies of Genetic Diversification in Atlantic and Pacific Thaumarchaeal Populations. Description: Hwang, Yunha, et al. Differentiated Evolutionary Strategies of Genetic Diversification in Atlantic and Pacific Thaumarchaeal Populations. ''mSystems''. 2022 Jun 28; '''7''' (3):e0147721
Longitudinal Evaluation of Gut Bacteriomes and Viromes after Fecal Microbiota Transplantation for Eradication of Carbapenem-Resistant Enterobacteriaceae. Description: Liu, Qin, et al. Longitudinal Evaluation of Gut Bacteriomes and Viromes after Fecal Microbiota Transplantation for Eradication of Carbapenem-Resistant Enterobacteriaceae. ''mSystems''. 2022 Jun 28; '''7''' (3):e0151021
Long-Read Metagenomics Improves the Recovery of Viral Diversity from Complex Natural Marine Samples. Description: Zaragoza-Solas, Asier, et al. Long-Read Metagenomics Improves the Recovery of Viral Diversity from Complex Natural Marine Samples. ''mSystems''. 2022 Jun 28; '''7''' (3):e0019222
Multi-omic Profiling Reveals that Intra-abdominal-Hypertension-Induced Intestinal Damage Can Be Prevented by Microbiome and Metabolic Modulations with 5-Hydroxyindoleacetic Acid as a Diagnostic Marker. Description: Li, Fang, et al. Multi-omic Profiling Reveals that Intra-abdominal-Hypertension-Induced Intestinal Damage Can Be Prevented by Microbiome and Metabolic Modulations with 5-Hydroxyindoleacetic Acid as a Diagnostic Marker. ''mSystems''. 2022 Jun 28; '''7''' (3):e0120421
Organizing the Global Diversity of Microviruses. Description: Kirchberger, Paul C, et al. Organizing the Global Diversity of Microviruses. ''mBio''. 2022 Jun 28; '''13''' (3):e0058822
Performance Characteristics of Next-Generation Sequencing for the Detection of Antimicrobial Resistance Determinants in Escherichia coli Genomes and Metagenomes. Description: Rooney, Ashley M, et al. Performance Characteristics of Next-Generation Sequencing for the Detection of Antimicrobial Resistance Determinants in Escherichia coli Genomes and Metagenomes. ''mSystems''. 2022 Jun 28; '''7''' (3):e0002222
Reevaluation of the Phylogenetic Diversity and Global Distribution of the Genus "Candidatus Accumulibacter". Description: Petriglieri, Francesca, et al. Reevaluation of the Phylogenetic Diversity and Global Distribution of the Genus "Candidatus Accumulibacter". ''mSystems''. 2022 Jun 28; '''7''' (3):e0001622
ROCker Models for Reliable Detection and Typing of Short-Read Sequences Carrying beta-Lactamase Genes. Description: Zhang, Si-Yu, et al. ROCker Models for Reliable Detection and Typing of Short-Read Sequences Carrying beta-Lactamase Genes. ''mSystems''. 2022 Jun 28; '''7''' (3):e0128121
The Proteobacterial Methanotroph Methylosinus trichosporium OB3b Remodels Membrane Lipids in Response to Phosphate Limitation. Description: Scanlan, Julie, et al. The Proteobacterial Methanotroph Methylosinus trichosporium OB3b Remodels Membrane Lipids in Response to Phosphate Limitation. ''mBio''. 2022 Jun 28; '''13''' (3):e0024722
The Virome of Healthy Honey Bee Colonies: Ubiquitous Occurrence of Known and New Viruses in Bee Populations. Description: Kadleckova, Dominika, et al. The Virome of Healthy Honey Bee Colonies: Ubiquitous Occurrence of Known and New Viruses in Bee Populations. ''mSystems''. 2022 Jun 28; '''7''' (3):e0007222
Extensively Drug-Resistant Klebsiella pneumoniae Counteracts Fitness and Virulence Costs That Accompanied Ceftazidime-Avibactam Resistance Acquisition. Description: Eger, Elias, et al. Extensively Drug-Resistant Klebsiella pneumoniae Counteracts Fitness and Virulence Costs That Accompanied Ceftazidime-Avibactam Resistance Acquisition. ''Microbiol Spectr''. 2022 Jun 29; '''10''' (3):e0014822
Genome of Malassezia arunalokei and Its Distribution on Facial Skin. Description: Cho, Yong-Joon, et al. Genome of Malassezia arunalokei and Its Distribution on Facial Skin. ''Microbiol Spectr''. 2022 Jun 29; '''10''' (3):e0050622
Insights into Prokaryotic Community and Its Potential Functions in Nitrogen Metabolism in the Bay of Bengal, a Pronounced Oxygen Minimum Zone. Description: Gu, Bowei, et al. Insights into Prokaryotic Community and Its Potential Functions in Nitrogen Metabolism in the Bay of Bengal, a Pronounced Oxygen Minimum Zone. ''Microbiol Spectr''. 2022 Jun 29; '''10''' (3):e0089221
Marine Sponge Endosymbionts: Structural and Functional Specificity of the Microbiome within Euryspongia arenaria Cells. Description: Yang, Qi, et al. Marine Sponge Endosymbionts: Structural and Functional Specificity of the Microbiome within Euryspongia arenaria Cells. ''Microbiol Spectr''. 2022 Jun 29; '''10''' (3):e0229621
Metatranscriptomics Unravel Composition, Drivers, and Functions of the Active Microorganisms in Light-Flavor Liquor Fermentation. Description: Pan, Yuanyuan, et al. Metatranscriptomics Unravel Composition, Drivers, and Functions of the Active Microorganisms in Light-Flavor Liquor Fermentation. ''Microbiol Spectr''. 2022 Jun 29; '''10''' (3):e0215121
Recovery of the Structure and Function of the Pig Manure Bacterial Community after Enrofloxacin Exposure. Description: Chen, Tao, et al. Recovery of the Structure and Function of the Pig Manure Bacterial Community after Enrofloxacin Exposure. ''Microbiol Spectr''. 2022 Jun 29; '''10''' (3):e0200421
A metatranscriptomic approach to explore longitudinal tissue specimens from non-healing diabetes related foot ulcers. Description: Radzieta, Michael, et al. A metatranscriptomic approach to explore longitudinal tissue specimens from non-healing diabetes related foot ulcers. ''APMIS''. 2022 Jul; '''130''' (7):383-396
Biosynthetic potential of the global ocean microbiome. Description: Paoli, Lucas, et al. Biosynthetic potential of the global ocean microbiome. ''Nature''. 2022 Jul; '''607''' (7917):111-118
Characterization of Diastereomeric Equilibria of Pseudotetrahedral Bis[(R or S)-N-1-(Ar)Ethylsalicylaldiminato-kappa(2) N,O]zinc(II) with Lambda/Delta-Chirality-At-Metal Induction. Description: Enamullah, Mohammed, et al. Characterization of Diastereomeric Equilibria of Pseudotetrahedral Bis[(R or S)-N-1-(Ar)Ethylsalicylaldiminato-kappa(2) N,O]zinc(II) with Lambda/Delta-Chirality-At-Metal Induction. ''ChemistryOpen''. 2022 Jul; '''11''' (7):e202200116
C-section increases cecal abundance of the archetypal bile acid and glucocorticoid modifying Lachnoclostridium [clostridium] scindens in mice. Description: Adams, Sean H, et al. C-section increases cecal abundance of the archetypal bile acid and glucocorticoid modifying Lachnoclostridium [clostridium] scindens in mice. ''Physiol Rep''. 2022 Jul; '''10''' (13):e15363
From rags to enriched: metagenomic insights into ammonia-oxidizing archaea following ammonia enrichment of a denuded oligotrophic soil ecosystem. Description: Vuong, Paton, et al. From rags to enriched: metagenomic insights into ammonia-oxidizing archaea following ammonia enrichment of a denuded oligotrophic soil ecosystem. ''Environ Microbiol''. 2022 Jul; '''24''' (7):3097-3110
Full length transcriptomes analysis of cold-resistance of Apis cerana in Changbai Mountain during overwintering period. Description: Liu, Nan-Nan, et al. Full length transcriptomes analysis of cold-resistance of Apis cerana in Changbai Mountain during overwintering period. ''Gene''. 2022 Jul 1; '''830''': 146503
Linking transcriptional dynamics of CH4-cycling grassland soil microbiomes to seasonal gas fluxes. Description: Taumer, Jana, et al. Linking transcriptional dynamics of CH4-cycling grassland soil microbiomes to seasonal gas fluxes. ''ISME J''. 2022 Jul; '''16''' (7):1788-1797
Long-term cost-effectiveness of Dexcom G6 real-time continuous glucose monitoring system in people with type 1 diabetes in Australia. Description: Isitt, J J, et al. Long-term cost-effectiveness of Dexcom G6 real-time continuous glucose monitoring system in people with type 1 diabetes in Australia. ''Diabet Med''. 2022 Jul; '''39''' (7):e14831
Microbial communities of Auka hydrothermal sediments shed light on vent biogeography and the evolutionary history of thermophily. Description: Speth, Daan R, et al. Microbial communities of Auka hydrothermal sediments shed light on vent biogeography and the evolutionary history of thermophily. ''ISME J''. 2022 Jul; '''16''' (7):1750-1764
Thoracic Aortic (18)F-Sodium Fluoride Activity and Ischemic Stroke in Patients With Established Cardiovascular Disease. Description: Fletcher, Alexander J, et al. Thoracic Aortic (18)F-Sodium Fluoride Activity and Ischemic Stroke in Patients With Established Cardiovascular Disease. ''JACC Cardiovasc Imaging''. 2022 Jul; '''15''' (7):1274-1288
Pseudofinder: Detection of Pseudogenes in Prokaryotic Genomes. Description: Syberg-Olsen, Mitchell J, et al. Pseudofinder: Detection of Pseudogenes in Prokaryotic Genomes. ''Mol Biol Evol''. 2022 Jul 2; '''39''' (7):
Lysophosphatidylserines derived from microbiota in Crohn's disease elicit pathological Th1 response. Description: Otake-Kasamoto, Yuriko, et al. Lysophosphatidylserines derived from microbiota in Crohn's disease elicit pathological Th1 response. ''J Exp Med''. 2022 Jul 4; '''219''' (7):
Halomonas salinarum sp. nov., a moderately halophilic bacterium isolated from saline soil in Yingkou, China. Description: Yin, Ya-Lin, et al. Halomonas salinarum sp. nov., a moderately halophilic bacterium isolated from saline soil in Yingkou, China. ''Arch Microbiol''. 2022 Jul 8; '''204''' (8):466
Chromosome-level assembly and annotation of the blue catfish Ictalurus furcatus, an aquaculture species for hybrid catfish reproduction, epigenetics, and heterosis studies. Description: Wang, Haolong, et al. Chromosome-level assembly and annotation of the blue catfish Ictalurus furcatus, an aquaculture species for hybrid catfish reproduction, epigenetics, and heterosis studies. ''Gigascience''. 2022 Jul 9; '''11''':
Lilac (Syringa oblata) genome provides insights into its evolution and molecular mechanism of petal color change. Description: Ma, Bo, et al. Lilac (Syringa oblata) genome provides insights into its evolution and molecular mechanism of petal color change. ''Commun Biol''. 2022 Jul 9; '''5''' (1):686
Chromosome-level genome assembly of the diploid blueberry Vaccinium darrowii provides insights into its subtropical adaptation and cuticle synthesis. Description: Cui, Fuqiang, et al. Chromosome-level genome assembly of the diploid blueberry Vaccinium darrowii provides insights into its subtropical adaptation and cuticle synthesis. ''Plant Commun''. 2022 Jul 11; '''3''' (4):100307
Crystal Growth from Anhydrous HF Solutions of M(2+) (M = Ca, Sr, Ba) and [AuF6](-), Not Only Simple M(AuF6)2 Salts. Description: Mazej, Zoran, et al. Crystal Growth from Anhydrous HF Solutions of M(2+) (M = Ca, Sr, Ba) and [AuF6](-), Not Only Simple M(AuF6)2 Salts. ''Inorg Chem''. 2022 Jul 11; '''61''' (27):10587-10597
Extracellular fructooligosaccharide degradation in Anaerostipes hadrus for co-metabolism with non-fructooligosaccharide utilizers. Description: Endo, Akihito, et al. Extracellular fructooligosaccharide degradation in Anaerostipes hadrus for co-metabolism with non-fructooligosaccharide utilizers. ''Biochem Biophys Res Commun''. 2022 Jul 12; '''613''': 81-86
Accurate identification of bacteriophages from metagenomic data using Transformer. Description: Shang, Jiayu, et al. Accurate identification of bacteriophages from metagenomic data using Transformer. ''Brief Bioinform''. 2022 Jul 18; '''23''' (4):
Genomic surveillance of Rift Valley fever virus: from sequencing to lineage assignment. Description: Juma, John, et al. Genomic surveillance of Rift Valley fever virus: from sequencing to lineage assignment. ''BMC Genomics''. 2022 Jul 18; '''23''' (1):520
Deoxynivalenol Biosynthesis in Fusarium pseudograminearum Significantly Repressed by a Megabirnavirus. Description: Li, Ke, et al. Deoxynivalenol Biosynthesis in Fusarium pseudograminearum Significantly Repressed by a Megabirnavirus. ''Toxins (Basel)''. 2022 Jul 19; '''14''' (7):
Isolation and Characterization of a Lytic Vibrio parahaemolyticus Phage vB_VpaP_GHSM17 from Sewage Samples. Description: Liang, Xunru, et al. Isolation and Characterization of a Lytic Vibrio parahaemolyticus Phage vB_VpaP_GHSM17 from Sewage Samples. ''Viruses''. 2022 Jul 22; '''14''' (8):
A De Novo Chromosome-Level Genome Assembly of the White-Tailed Deer, Odocoileus Virginianus. Description: London, Evan W, et al. A De Novo Chromosome-Level Genome Assembly of the White-Tailed Deer, Odocoileus Virginianus. ''J Hered''. 2022 Jul 23; '''113''' (4):479-489
An Age Effect of Rumen Microbiome in Dairy Buffaloes Revealed by Metagenomics. Description: Li, Long-Ping, et al. An Age Effect of Rumen Microbiome in Dairy Buffaloes Revealed by Metagenomics. ''Microorganisms''. 2022 Jul 25; '''10''' (8):
Single crystal spectroscopy and multiple structures from one crystal (MSOX) define catalysis in copper nitrite reductases. Description: Rose, Samuel L, et al. Single crystal spectroscopy and multiple structures from one crystal (MSOX) define catalysis in copper nitrite reductases. ''Proc Natl Acad Sci U S A''. 2022 Jul 26; '''119''' (30):e2205664119
A chromosome-level genome assembly of Neotoxoptera formosana (Takahashi, 1921) (Hemiptera: Aphididae). Description: Ye, Shuai, et al. A chromosome-level genome assembly of Neotoxoptera formosana (Takahashi, 1921) (Hemiptera: Aphididae). ''G3 (Bethesda)''. 2022 Jul 29; '''12''' (8):
Genome of the bee Holcopasites calliopsidis-a species showing the common apid trait of brood parasitism. Description: Sless, Trevor J L, et al. Genome of the bee Holcopasites calliopsidis-a species showing the common apid trait of brood parasitism. ''G3 (Bethesda)''. 2022 Jul 29; '''12''' (8):
Antibiotic resistance genes are differentially mobilized according to resistance mechanism. Description: Nielsen, Tue Kjaergaard, et al. Antibiotic resistance genes are differentially mobilized according to resistance mechanism. ''Gigascience''. 2022 Jul 30; '''11''':
Probing the transcriptome of Boehmeria nivea reveals candidate genes associated with the biosynthesis of chlorogenic acid. Description: Zhao, Liqiang, et al. Probing the transcriptome of Boehmeria nivea reveals candidate genes associated with the biosynthesis of chlorogenic acid. ''Gene''. 2022 Jul 30; '''833''': 146579
Cm28, a scorpion toxin having a unique primary structure, inhibits KV1.2 and KV1.3 with high affinity. Description: Naseem, Muhammad Umair, et al. Cm28, a scorpion toxin having a unique primary structure, inhibits KV1.2 and KV1.3 with high affinity. ''J Gen Physiol''. 2022 Aug 1; '''154''' (8):
Cross-feeding among microalgae facilitates nitrogen recovery at low C/N. Description: Kong, Lingrui, et al. Cross-feeding among microalgae facilitates nitrogen recovery at low C/N. ''Environ Res''. 2022 Aug; '''211''': 113052
Discovery of lignin-transforming bacteria and enzymes in thermophilic environments using stable isotope probing. Description: Levy-Booth, David J, et al. Discovery of lignin-transforming bacteria and enzymes in thermophilic environments using stable isotope probing. ''ISME J''. 2022 Aug; '''16''' (8):1944-1956
Distinct translatome changes in specific neural populations precede electroencephalographic changes in prion-infected mice. Description: Kaczmarczyk, Lech, et al. Distinct translatome changes in specific neural populations precede electroencephalographic changes in prion-infected mice. ''PLoS Pathog''. 2022 Aug; '''18''' (8):e1010747
Effects of dapagliflozin on volume status and systemic haemodynamics in patients with chronic kidney disease without diabetes: Results from DAPASALT and DIAMOND. Description: Sen, Taha, et al. Effects of dapagliflozin on volume status and systemic haemodynamics in patients with chronic kidney disease without diabetes: Results from DAPASALT and DIAMOND. ''Diabetes Obes Metab''. 2022 Aug; '''24''' (8):1578-1587
Metagenomic tracking of antibiotic resistance genes through a pre-harvest vegetable production system: an integrated lab-, microcosm- and greenhouse-scale analysis. Description: Keenum, Ishi, et al. Metagenomic tracking of antibiotic resistance genes through a pre-harvest vegetable production system: an integrated lab-, microcosm- and greenhouse-scale analysis. ''Environ Microbiol''. 2022 Aug; '''24''' (8):3705-3721
The activity and functions of soil microbial communities in the Finnish sub-Arctic vary across vegetation types. Description: Viitamaki, Sirja, et al. The activity and functions of soil microbial communities in the Finnish sub-Arctic vary across vegetation types. ''FEMS Microbiol Ecol''. 2022 Aug 1; '''98''' (8):
The evolutionary origin of host association in the Rickettsiales. Description: Schon, Max E, et al. The evolutionary origin of host association in the Rickettsiales. ''Nat Microbiol''. 2022 Aug; '''7''' (8):1189-1199
Trafficked Malayan pangolins contain viral pathogens of humans. Description: Shi, Wenqiang, et al. Trafficked Malayan pangolins contain viral pathogens of humans. ''Nat Microbiol''. 2022 Aug; '''7''' (8):1259-1269
PCR-tips for rapid diagnosis of bacterial pathogens. Description: Gimenez, Claudia, et al. PCR-tips for rapid diagnosis of bacterial pathogens. ''Appl Microbiol Biotechnol''. 2022 Aug 2;
HGT is widespread in insects and contributes to male courtship in lepidopterans. Description: Li, Yang, et al. HGT is widespread in insects and contributes to male courtship in lepidopterans. ''Cell''. 2022 Aug 4; '''185''' (16):2975-2987.e10
Uncovering Hidden Members and Functions of the Soil Microbiome Using De Novo Metaproteomics. Description: Lee, Joon-Yong, et al. Uncovering Hidden Members and Functions of the Soil Microbiome Using De Novo Metaproteomics. ''J Proteome Res''. 2022 Aug 5; '''21''' (8):2023-2035
Bromo- and iodo-bridged building units in metal-organic frameworks for enhanced carrier transport and CO2 photoreduction by water vapor. Description: Chen, Xinfeng, et al. Bromo- and iodo-bridged building units in metal-organic frameworks for enhanced carrier transport and CO2 photoreduction by water vapor. ''Nat Commun''. 2022 Aug 6; '''13''' (1):4592
Comparative transcriptomics reveals the molecular toolkit used by an algivorous protist for cell wall perforation. Description: Gerbracht, Jennifer V, et al. Comparative transcriptomics reveals the molecular toolkit used by an algivorous protist for cell wall perforation. ''Curr Biol''. 2022 Aug 8; '''32''' (15):3374-3384.e5
Metagenomic assembly reveals hosts and mobility of common antibiotic resistome in animal manure and commercial compost. Description: Qiu, Tianlei, et al. Metagenomic assembly reveals hosts and mobility of common antibiotic resistome in animal manure and commercial compost. ''Environ Microbiome''. 2022 Aug 11; '''17''' (1):42
vRhyme enables binning of viral genomes from metagenomes. Description: Kieft, Kristopher, et al. vRhyme enables binning of viral genomes from metagenomes. ''Nucleic Acids Res''. 2022 Aug 12; '''50''' (14):e83
The gill transcriptome of threatened European freshwater mussels. Description: Gomes-Dos-Santos, Andre, et al. The gill transcriptome of threatened European freshwater mussels. ''Sci Data''. 2022 Aug 13; '''9''' (1):494
Comparative genomics analysis of Bacillus velezensis LOH112 isolated from a nonagenarian provides insights into its biocontrol and probiotic traits. Description: Ge, Zhenhuang, et al. Comparative genomics analysis of Bacillus velezensis LOH112 isolated from a nonagenarian provides insights into its biocontrol and probiotic traits. ''Gene''. 2022 Aug 15; '''835''': 146644
Genome analysis uncovers the prolific antagonistic and plant growth-promoting potential of endophyte Bacillus velezensis K1. Description: Nanjani, Sandhya, et al. Genome analysis uncovers the prolific antagonistic and plant growth-promoting potential of endophyte Bacillus velezensis K1. ''Gene''. 2022 Aug 20; '''836''': 146671
A Long-Read Genome Assembly of a Native Mite in China Pyemotes zhonghuajia Yu, Zhang & He (Prostigmata: Pyemotidae) Reveals Gene Expansion in Toxin-Related Gene Families. Description: Song, Yan-Fei, et al. A Long-Read Genome Assembly of a Native Mite in China Pyemotes zhonghuajia Yu, Zhang & He (Prostigmata: Pyemotidae) Reveals Gene Expansion in Toxin-Related Gene Families. ''Toxins (Basel)''. 2022 Aug 21; '''14''' (8):
Comparative Genomics of Mortierellaceae Provides Insights into Lipid Metabolism: Two Novel Types of Fatty Acid Synthase. Description: Zhao, Heng, et al. Comparative Genomics of Mortierellaceae Provides Insights into Lipid Metabolism: Two Novel Types of Fatty Acid Synthase. ''J Fungi (Basel)''. 2022 Aug 23; '''8''' (9):
A chromosome-level reference genome of a Convolvulaceae species Ipomoea cairica. Description: Jiang, Fan, et al. A chromosome-level reference genome of a Convolvulaceae species Ipomoea cairica. ''G3 (Bethesda)''. 2022 Aug 25; '''12''' (9):
Adaptation to Environmental Extremes Structures Functional Traits in Biological Soil Crust and Hypolithic Microbial Communities. Description: Mackelprang, Rachel, et al. Adaptation to Environmental Extremes Structures Functional Traits in Biological Soil Crust and Hypolithic Microbial Communities. ''mSystems''. 2022 Aug 30; '''7''' (4):e0141921
Comparative Metagenomics Highlight a Widespread Pathway Involved in Catabolism of Phosphonates in Marine and Terrestrial Serpentinizing Ecosystems. Description: Frouin, Eleonore, et al. Comparative Metagenomics Highlight a Widespread Pathway Involved in Catabolism of Phosphonates in Marine and Terrestrial Serpentinizing Ecosystems. ''mSystems''. 2022 Aug 30; '''7''' (4):e0032822
Comprehensive Evaluation of RNA and DNA Viromic Methods Based on Species Richness and Abundance Analyses Using Marmot Rectal Samples. Description: Sun, Yue, et al. Comprehensive Evaluation of RNA and DNA Viromic Methods Based on Species Richness and Abundance Analyses Using Marmot Rectal Samples. ''mSystems''. 2022 Aug 30; '''7''' (4):e0043022
Deep-Sea In Situ Insights into the Formation of Zero-Valent Sulfur Driven by a Bacterial Thiosulfate Oxidation Pathway. Description: Cai, Ruining, et al. Deep-Sea In Situ Insights into the Formation of Zero-Valent Sulfur Driven by a Bacterial Thiosulfate Oxidation Pathway. ''mBio''. 2022 Aug 30; '''13''' (4):e0014322
Diverse Genomic Traits Differentiate Sinking-Particle-Associated versus Free-Living Microbes throughout the Oligotrophic Open Ocean Water Column. Description: Leu, Andy O, et al. Diverse Genomic Traits Differentiate Sinking-Particle-Associated versus Free-Living Microbes throughout the Oligotrophic Open Ocean Water Column. ''mBio''. 2022 Aug 30; '''13''' (4):e0156922
Long-Read-Resolved, Ecosystem-Wide Exploration of Nucleotide and Structural Microdiversity of Lake Bacterioplankton Genomes. Description: Okazaki, Yusuke, et al. Long-Read-Resolved, Ecosystem-Wide Exploration of Nucleotide and Structural Microdiversity of Lake Bacterioplankton Genomes. ''mSystems''. 2022 Aug 30; '''7''' (4):e0043322
A Candidate Gene Cluster for the Bioactive Natural Product Gyrophoric Acid in Lichen-Forming Fungi. Description: Singh, Garima, et al. A Candidate Gene Cluster for the Bioactive Natural Product Gyrophoric Acid in Lichen-Forming Fungi. ''Microbiol Spectr''. 2022 Aug 31; '''10''' (4):e0010922
Carbohydrate-Active Enzymes of a Novel Halotolerant Alkalihalobacillus Species for Hydrolysis of Starch and Other Algal Polysaccharides. Description: Masasa, Matan, et al. Carbohydrate-Active Enzymes of a Novel Halotolerant Alkalihalobacillus Species for Hydrolysis of Starch and Other Algal Polysaccharides. ''Microbiol Spectr''. 2022 Aug 31; '''10''' (4):e0107822
Comprehensive Assessment of Functional Effects of Commonly Used Sugar Substitute Sweeteners on Ex Vivo Human Gut Microbiome. Description: Sun, Zhongzhi, et al. Comprehensive Assessment of Functional Effects of Commonly Used Sugar Substitute Sweeteners on Ex Vivo Human Gut Microbiome. ''Microbiol Spectr''. 2022 Aug 31; '''10''' (4):e0041222
Cytokinin Regulates Energy Utilization in Botrytis cinerea. Description: Anand, Gautam, et al. Cytokinin Regulates Energy Utilization in Botrytis cinerea. ''Microbiol Spectr''. 2022 Aug 31; '''10''' (4):e0028022
Divergent Host-Microbe Interaction and Pathogenesis Proteins Detected in Recently Identified Liberibacter Species. Description: Hansen, Allison K, et al. Divergent Host-Microbe Interaction and Pathogenesis Proteins Detected in Recently Identified Liberibacter Species. ''Microbiol Spectr''. 2022 Aug 31; '''10''' (4):e0209122
Dysgonomonas mossii Strain Shenzhen WH 0221, a New Member of the Genus Dysgonomonas Isolated from the Blood of a Patient with Diabetic Nephropathy, Exhibits Multiple Antibiotic Resistance. Description: Gao, Xiaojuan, et al. Dysgonomonas mossii Strain Shenzhen WH 0221, a New Member of the Genus Dysgonomonas Isolated from the Blood of a Patient with Diabetic Nephropathy, Exhibits Multiple Antibiotic Resistance. ''Microbiol Spectr''. 2022 Aug 31; '''10''' (4):e0238121
From Glaciers to Refrigerators: the Population Genomics and Biocontrol Potential of the Black Yeast Aureobasidium subglaciale. Description: Zajc, Janja, et al. From Glaciers to Refrigerators: the Population Genomics and Biocontrol Potential of the Black Yeast Aureobasidium subglaciale. ''Microbiol Spectr''. 2022 Aug 31; '''10''' (4):e0145522
In Vitro Effect of 5-Nitroimidazole Drugs against Trichomonas vaginalis Clinical Isolates. Description: Mtshali, Andile, et al. In Vitro Effect of 5-Nitroimidazole Drugs against Trichomonas vaginalis Clinical Isolates. ''Microbiol Spectr''. 2022 Aug 31; '''10''' (4):e0091222
Plasma Virome Reveals Blooms and Transmission of Anellovirus in Intravenous Drug Users with HIV-1, HCV, and/or HBV Infections. Description: Li, Yanpeng, et al. Plasma Virome Reveals Blooms and Transmission of Anellovirus in Intravenous Drug Users with HIV-1, HCV, and/or HBV Infections. ''Microbiol Spectr''. 2022 Aug 31; '''10''' (4):e0144722
Virome of Giant Panda-Infesting Ticks Reveals Novel Bunyaviruses and Other Viruses That Are Genetically Close to Those from Giant Pandas. Description: Ma, Rui, et al. Virome of Giant Panda-Infesting Ticks Reveals Novel Bunyaviruses and Other Viruses That Are Genetically Close to Those from Giant Pandas. ''Microbiol Spectr''. 2022 Aug 31; '''10''' (4):e0203422
Divergent genomic trajectories predate the origin of animals and fungi. Description: Ocana-Pallares, Eduard, et al. Divergent genomic trajectories predate the origin of animals and fungi. ''Nature''. 2022 Sep; '''609''' (7928):747-753
Dynamic patterns of quorum sensing signals in phycospheric microbes during a marine algal bloom. Description: Zhu, Jianming, et al. Dynamic patterns of quorum sensing signals in phycospheric microbes during a marine algal bloom. ''Environ Res''. 2022 Sep; '''212''' (Pt C):113443
Dynamics of the secreted frizzled related protein Sizzled and potential implications for binding to bone morphogenetic protein-1 (BMP-1). Description: Sharma, Urvashi, et al. Dynamics of the secreted frizzled related protein Sizzled and potential implications for binding to bone morphogenetic protein-1 (BMP-1). ''Sci Rep''. 2022 Sep 1; '''12''' (1):14850
Evolutionary conservation of maternal RNA localization in fishes and amphibians revealed by TOMO-Seq. Description: Naraine, Ravindra, et al. Evolutionary conservation of maternal RNA localization in fishes and amphibians revealed by TOMO-Seq. ''Dev Biol''. 2022 Sep; '''489''': 146-160
Exploring the mobilome and resistome of Enterococcus faecium in a One Health context across two continents. Description: Sanderson, Haley, et al. Exploring the mobilome and resistome of Enterococcus faecium in a One Health context across two continents. ''Microb Genom''. 2022 Sep; '''8''' (9):
Genomic epidemiology of the SARS-CoV-2 epidemic in Brazil. Description: Giovanetti, Marta, et al. Genomic epidemiology of the SARS-CoV-2 epidemic in Brazil. ''Nat Microbiol''. 2022 Sep; '''7''' (9):1490-1500
Global and seasonal variation of marine phosphonate metabolism. Description: Lockwood, Scott, et al. Global and seasonal variation of marine phosphonate metabolism. ''ISME J''. 2022 Sep; '''16''' (9):2198-2212
Globally distributed mining-impacted environments are underexplored hotspots of multidrug resistance genes. Description: Yi, Xinzhu, et al. Globally distributed mining-impacted environments are underexplored hotspots of multidrug resistance genes. ''ISME J''. 2022 Sep; '''16''' (9):2099-2113
Higher spreading risk of antibacterial biocide and heavy metal resistance genes than antibiotic resistance genes in aerobic granular sludge. Description: Li, Dingchang, et al. Higher spreading risk of antibacterial biocide and heavy metal resistance genes than antibiotic resistance genes in aerobic granular sludge. ''Environ Res''. 2022 Sep; '''212''' (Pt C):113356
Identification of nosZ-expressing microorganisms consuming trace N2O in microaerobic chemostat consortia dominated by an uncultured Burkholderiales. Description: Kim, Daehyun D, et al. Identification of nosZ-expressing microorganisms consuming trace N2O in microaerobic chemostat consortia dominated by an uncultured Burkholderiales. ''ISME J''. 2022 Sep; '''16''' (9):2087-2098
Maternal and neonatal viromes indicate the risk of offspring's gastrointestinal tract exposure to pathogenic viruses of vaginal origin during delivery. Description: Wang, Jinfeng, et al. Maternal and neonatal viromes indicate the risk of offspring's gastrointestinal tract exposure to pathogenic viruses of vaginal origin during delivery. ''mLife''. 2022 Sep; '''1''' (3):303-310
Metatranscriptomic profiling reveals diverse tick-borne bacteria, protozoans and viruses in ticks and wildlife from Australia. Description: Gofton, Alexander W, et al. Metatranscriptomic profiling reveals diverse tick-borne bacteria, protozoans and viruses in ticks and wildlife from Australia. ''Transbound Emerg Dis''. 2022 Sep; '''69''' (5):e2389-e2407
Origination of LTR Retroelement-Derived NYNRIN Coincides with Therian Placental Emergence. Description: Plianchaisuk, Arnon, et al. Origination of LTR Retroelement-Derived NYNRIN Coincides with Therian Placental Emergence. ''Mol Biol Evol''. 2022 Sep 1; '''39''' (9):
Stable carbon isotope values of syndepositional carbonate spherules and micrite record spatial and temporal changes in photosynthesis intensity. Description: Chen, Mingfei, et al. Stable carbon isotope values of syndepositional carbonate spherules and micrite record spatial and temporal changes in photosynthesis intensity. ''Geobiology''. 2022 Sep; '''20''' (5):667-689
StrainPanDA: Linked reconstruction of strain composition and gene content profiles via pangenome-based decomposition of metagenomic data. Description: Hu, Han, et al. StrainPanDA: Linked reconstruction of strain composition and gene content profiles via pangenome-based decomposition of metagenomic data. ''Imeta''. 2022 Sep; '''1''' (3):e41
The enteric virome of cats with feline panleukopenia differs in abundance and diversity from healthy cats. Description: Van Brussel, Kate, et al. The enteric virome of cats with feline panleukopenia differs in abundance and diversity from healthy cats. ''Transbound Emerg Dis''. 2022 Sep; '''69''' (5):e2952-e2966
Design, synthesis and characterization of novel Ni(II) and Cu(II) complexes as antivirus drug candidates against SARS-CoV-2 and HIV virus. Description: Aprajita, et al. Design, synthesis and characterization of novel Ni(II) and Cu(II) complexes as antivirus drug candidates against SARS-CoV-2 and HIV virus. ''J Mol Struct''. 2022 Sep 5; '''1263''': 133114
Metabolic Strategies Shared by Basement Residents of the Lost City Hydrothermal Field. Description: Brazelton, William J, et al. Metabolic Strategies Shared by Basement Residents of the Lost City Hydrothermal Field. ''Appl Environ Microbiol''. 2022 Sep 13; '''88''' (17):e0092922
Glucose consumption rate-dependent transcriptome profiling of Escherichia coli provides insight on performance as microbial factories. Description: Fragoso-Jimenez, Juan Carlos, et al. Glucose consumption rate-dependent transcriptome profiling of Escherichia coli provides insight on performance as microbial factories. ''Microb Cell Fact''. 2022 Sep 14; '''21''' (1):189
Metagenomic analysis reveals presence of different animal viruses in commercial fetal bovine serum and trypsin. Description: Zhang, Peng, et al. Metagenomic analysis reveals presence of different animal viruses in commercial fetal bovine serum and trypsin. ''Zool Res''. 2022 Sep 18; '''43''' (5):756-766
Design principles to assemble drug combinations for effective tuberculosis therapy using interpretable pairwise drug response measurements. Description: Larkins-Ford, Jonah, et al. Design principles to assemble drug combinations for effective tuberculosis therapy using interpretable pairwise drug response measurements. ''Cell Rep Med''. 2022 Sep 20; '''3''' (9):100737
Whole Transcriptome Analyses of Apricots and Japanese Plum Fruits after 1-MCP (Ethylene-Inhibitor) and Ethrel (Ethylene-Precursor) Treatments Reveal New Insights into the Physiology of the Ripening Process. Description: Salazar, Juan A, et al. Whole Transcriptome Analyses of Apricots and Japanese Plum Fruits after 1-MCP (Ethylene-Inhibitor) and Ethrel (Ethylene-Precursor) Treatments Reveal New Insights into the Physiology of the Ripening Process. ''Int J Mol Sci''. 2022 Sep 20; '''23''' (19):
A combined protein toxin screening based on the transcriptome and proteome of Solenopsis invicta. Description: Cai, Liuyang, et al. A combined protein toxin screening based on the transcriptome and proteome of Solenopsis invicta. ''Proteome Sci''. 2022 Sep 21; '''20''' (1):15
Full-Length Transcriptome Maps of Reef-Building Coral Illuminate the Molecular Basis of Calcification, Symbiosis, and Circadian Genes. Description: Han, Tingyu, et al. Full-Length Transcriptome Maps of Reef-Building Coral Illuminate the Molecular Basis of Calcification, Symbiosis, and Circadian Genes. ''Int J Mol Sci''. 2022 Sep 22; '''23''' (19):
Accurate detection of benign and malignant renal tumor subtypes with MethylBoostER: An epigenetic marker-driven learning framework. Description: Rossi, Sabrina H, et al. Accurate detection of benign and malignant renal tumor subtypes with MethylBoostER: An epigenetic marker-driven learning framework. ''Sci Adv''. 2022 Sep 30; '''8''' (39):eabn9828
Comparative Metagenomics and Metabolomes Reveals Abnormal Metabolism Activity Is Associated with Gut Microbiota in Alzheimer's Disease Mice. Description: Sun, Peilin, et al. Comparative Metagenomics and Metabolomes Reveals Abnormal Metabolism Activity Is Associated with Gut Microbiota in Alzheimer's Disease Mice. ''Int J Mol Sci''. 2022 Sep 30; '''23''' (19):
alpha-cyanobacteria possessing form IA RuBisCO globally dominate aquatic habitats. Description: Cabello-Yeves, Pedro J, et al. alpha-cyanobacteria possessing form IA RuBisCO globally dominate aquatic habitats. ''ISME J''. 2022 Oct; '''16''' (10):2421-2432
A super pan-genomic landscape of rice. Description: Shang, Lianguang, et al. A super pan-genomic landscape of rice. ''Cell Res''. 2022 Oct; '''32''' (10):878-896
Expression and regulatory network of long noncoding RNA in rats after spinal cord hemisection injury. Description: Liu, Wei, et al. Expression and regulatory network of long noncoding RNA in rats after spinal cord hemisection injury. ''Neural Regen Res''. 2022 Oct; '''17''' (10):2300-2304
Metagenomics and metatranscriptomics analyses of antibiotic synthesis in activated sludge. Description: Huang, Yu, et al. Metagenomics and metatranscriptomics analyses of antibiotic synthesis in activated sludge. ''Environ Res''. 2022 Oct; '''213''': 113741
Rapid bacterioplankton transcription cascades regulate organic matter utilization during phytoplankton bloom progression in a coastal upwelling system. Description: Pontiller, Benjamin, et al. Rapid bacterioplankton transcription cascades regulate organic matter utilization during phytoplankton bloom progression in a coastal upwelling system. ''ISME J''. 2022 Oct; '''16''' (10):2360-2372
The Natural Product Domain Seeker version 2 (NaPDoS2) webtool relates ketosynthase phylogeny to biosynthetic function. Description: Klau, Leesa J, et al. The Natural Product Domain Seeker version 2 (NaPDoS2) webtool relates ketosynthase phylogeny to biosynthetic function. ''J Biol Chem''. 2022 Oct; '''298''' (10):102480
Transcriptomic Analysis to Unravel Potential Pathways and Genes Involved in Pecan (Carya illinoinensis) Resistance to Pestalotiopsis microspora. Description: Chen, Yu, et al. Transcriptomic Analysis to Unravel Potential Pathways and Genes Involved in Pecan (Carya illinoinensis) Resistance to Pestalotiopsis microspora. ''Int J Mol Sci''. 2022 Oct 1; '''23''' (19):
Integrated Multi-Omics Analysis Reveals Differential Effects of Fructo-Oligosaccharides (FOS) Supplementation on the Human Gut Ecosystem. Description: Kato, Tamotsu, et al. Integrated Multi-Omics Analysis Reveals Differential Effects of Fructo-Oligosaccharides (FOS) Supplementation on the Human Gut Ecosystem. ''Int J Mol Sci''. 2022 Oct 3; '''23''' (19):
Comprehensive collection of genes and comparative analysis of full-length transcriptome sequences from Japanese larch (Larix kaempferi) and Kuril larch (Larix gmelinii var. japonica). Description: Mishima, Kentaro, et al. Comprehensive collection of genes and comparative analysis of full-length transcriptome sequences from Japanese larch (Larix kaempferi) and Kuril larch (Larix gmelinii var. japonica). ''BMC Plant Biol''. 2022 Oct 4; '''22''' (1):470
Ultra-deep Sequencing of Hadza Hunter-Gatherers Recovers Vanishing Gut Microbes. Description: Merrill, Bryan D, et al. Ultra-deep Sequencing of Hadza Hunter-Gatherers Recovers Vanishing Gut Microbes. ''bioRxiv''. 2022 Oct 6;
Examining the Effects of Hibernation on Germline Mutation Rates in Grizzly Bears. Description: Wang, Richard J, et al. Examining the Effects of Hibernation on Germline Mutation Rates in Grizzly Bears. ''Genome Biol Evol''. 2022 Oct 7; '''14''' (10):
De novo transcriptome reconstruction in aquacultured early life stages of the cephalopod Octopus vulgaris. Description: Prado-Alvarez, Maria, et al. De novo transcriptome reconstruction in aquacultured early life stages of the cephalopod Octopus vulgaris. ''Sci Data''. 2022 Oct 8; '''9''' (1):609
Genome-Wide Prediction and Analysis of Oryza Species NRP Genes in Rice Blast Resistance. Description: Liang, Dong, et al. Genome-Wide Prediction and Analysis of Oryza Species NRP Genes in Rice Blast Resistance. ''Int J Mol Sci''. 2022 Oct 8; '''23''' (19):
Pivotal interplays between fecal metabolome and gut microbiome reveal functional signatures in cerebral ischemic stroke. Description: Zhao, Lanlan, et al. Pivotal interplays between fecal metabolome and gut microbiome reveal functional signatures in cerebral ischemic stroke. ''J Transl Med''. 2022 Oct 8; '''20''' (1):459
Phylogenetic and functional diverse ANME-1 thrive in Arctic hydrothermal vents. Description: Vulcano, F, et al. Phylogenetic and functional diverse ANME-1 thrive in Arctic hydrothermal vents. ''FEMS Microbiol Ecol''. 2022 Oct 17; '''98''' (11):
Effects of heat stress on 16S rDNA, metagenome and metabolome in Holstein cows at different growth stages. Description: Feng, Lei, et al. Effects of heat stress on 16S rDNA, metagenome and metabolome in Holstein cows at different growth stages. ''Sci Data''. 2022 Oct 22; '''9''' (1):644
Altered fecal microbial and metabolic profile reveals potential mechanisms underlying iron deficiency anemia in pregnant women in China. Description: Chen, Haixia, et al. Altered fecal microbial and metabolic profile reveals potential mechanisms underlying iron deficiency anemia in pregnant women in China. ''Bosn J Basic Med Sci''. 2022 Oct 23; '''22''' (6):923-933
Association of Cervical Dysbacteriosis, HPV Oncogene Expression, and Cervical Lesion Progression. Description: Liu, Hang, et al. Association of Cervical Dysbacteriosis, HPV Oncogene Expression, and Cervical Lesion Progression. ''Microbiol Spectr''. 2022 Oct 26; '''10''' (5):e0015122
Bidirectional Interactions between Arboviruses and the Bacterial and Viral Microbiota in Aedes aegypti and Culex quinquefasciatus. Description: Shi, Chenyan, et al. Bidirectional Interactions between Arboviruses and the Bacterial and Viral Microbiota in Aedes aegypti and Culex quinquefasciatus. ''mBio''. 2022 Oct 26; '''13''' (5):e0102122
Chromosome-Level Genome Sequences, Comparative Genomic Analyses, and Secondary-Metabolite Biosynthesis Evaluation of the Medicinal Edible Mushroom Laetiporus sulphureus. Description: Dong, Wei-Ge, et al. Chromosome-Level Genome Sequences, Comparative Genomic Analyses, and Secondary-Metabolite Biosynthesis Evaluation of the Medicinal Edible Mushroom Laetiporus sulphureus. ''Microbiol Spectr''. 2022 Oct 26; '''10''' (5):e0243922
Community Dynamics in Structure and Function of Honey Bee Gut Bacteria in Response to Winter Dietary Shift. Description: Li, Chenyi, et al. Community Dynamics in Structure and Function of Honey Bee Gut Bacteria in Response to Winter Dietary Shift. ''mBio''. 2022 Oct 26; '''13''' (5):e0113122
Dysbiotic Oral and Gut Viromes in Untreated and Treated Rheumatoid Arthritis Patients. Description: Guo, Ruochun, et al. Dysbiotic Oral and Gut Viromes in Untreated and Treated Rheumatoid Arthritis Patients. ''Microbiol Spectr''. 2022 Oct 26; '''10''' (5):e0034822
Genome-Resolved Metagenomics Informs the Functional Ecology of Uncultured Acidobacteria in Redox Oscillated Sphagnum Peat. Description: Reji, Linta, et al. Genome-Resolved Metagenomics Informs the Functional Ecology of Uncultured Acidobacteria in Redox Oscillated Sphagnum Peat. ''mSystems''. 2022 Oct 26; '''7''' (5):e0005522
High Nucleotide Substitution Rates Associated with Retrotransposon Proliferation Drive Dynamic Secretome Evolution in Smut Pathogens. Description: Depotter, J R L, et al. High Nucleotide Substitution Rates Associated with Retrotransposon Proliferation Drive Dynamic Secretome Evolution in Smut Pathogens. ''Microbiol Spectr''. 2022 Oct 26; '''10''' (5):e0034922
Intraintestinal Analysis of the Functional Activity of Microbiomes and Its Application to the Common Marmoset Intestine. Description: Uehara, Mika, et al. Intraintestinal Analysis of the Functional Activity of Microbiomes and Its Application to the Common Marmoset Intestine. ''mSystems''. 2022 Oct 26; '''7''' (5):e0052022
MetaPhage: an Automated Pipeline for Analyzing, Annotating, and Classifying Bacteriophages in Metagenomics Sequencing Data. Description: Pandolfo, Mattia, et al. MetaPhage: an Automated Pipeline for Analyzing, Annotating, and Classifying Bacteriophages in Metagenomics Sequencing Data. ''mSystems''. 2022 Oct 26; '''7''' (5):e0074122
Moisture Controls the Suppression of Panax notoginseng Root Rot Disease by Indigenous Bacterial Communities. Description: Guo, Cunwu, et al. Moisture Controls the Suppression of Panax notoginseng Root Rot Disease by Indigenous Bacterial Communities. ''mSystems''. 2022 Oct 26; '''7''' (5):e0041822
Reduced and Nonreduced Genomes in Paraburkholderia Symbionts of Social Amoebas. Description: Noh, Suegene, et al. Reduced and Nonreduced Genomes in Paraburkholderia Symbionts of Social Amoebas. ''mSystems''. 2022 Oct 26; '''7''' (5):e0056222
Canine Saliva as a Possible Source of Antimicrobial Resistance Genes. Description: Toth, Adrienn Greta, et al. Canine Saliva as a Possible Source of Antimicrobial Resistance Genes. ''Antibiotics (Basel)''. 2022 Oct 27; '''11''' (11):
Integrated Analysis of the Fecal Metagenome and Metabolome in Bladder Cancer in a Chinese Population. Description: Qin, Chuan, et al. Integrated Analysis of the Fecal Metagenome and Metabolome in Bladder Cancer in a Chinese Population. ''Genes (Basel)''. 2022 Oct 28; '''13''' (11):
Analyses of adult transcriptomes from four different populations of the spongy moth, Lymantria dispar L., from China and the USA. Description: Wang, Yi-Ming, et al. Analyses of adult transcriptomes from four different populations of the spongy moth, Lymantria dispar L., from China and the USA. ''Sci Rep''. 2022 Oct 29; '''12''' (1):18232
Isolation and Molecular Characterization of Two Novel Lytic Bacteriophages for the Biocontrol of Escherichia coli in Uterine Infections: In Vitro and Ex Vivo Preliminary Studies in Veterinary Medicine. Description: Balcao, Victor M, et al. Isolation and Molecular Characterization of Two Novel Lytic Bacteriophages for the Biocontrol of Escherichia coli in Uterine Infections: In Vitro and Ex Vivo Preliminary Studies in Veterinary Medicine. ''Pharmaceutics''. 2022 Oct 30; '''14''' (11):
The Capparis spinosa var. herbacea genome provides the first genomic instrument for a diversity and evolution study of the Capparaceae family. Description: Wang, Lei, et al. The Capparis spinosa var. herbacea genome provides the first genomic instrument for a diversity and evolution study of the Capparaceae family. ''Gigascience''. 2022 Oct 30; '''11''':
Adherent Bacteria and Parasiticidal Secretion Products of Human Cervicovaginal Microbiota-Associated Lactobacillus gasseri Confer Non-Identical Cell Protection against Trichomonas vaginalis-Induced Cell Detachment. Description: Pradines, Benedicte, et al. Adherent Bacteria and Parasiticidal Secretion Products of Human Cervicovaginal Microbiota-Associated Lactobacillus gasseri Confer Non-Identical Cell Protection against Trichomonas vaginalis-Induced Cell Detachment. ''Pharmaceuticals (Basel)''. 2022 Oct 31; '''15''' (11):
Genome-Wide Identification and Functional Analysis of the GASA Gene Family Responding to Multiple Stressors in Canavalia rosea. Description: Zhang, Mei, et al. Genome-Wide Identification and Functional Analysis of the GASA Gene Family Responding to Multiple Stressors in Canavalia rosea. ''Genes (Basel)''. 2022 Oct 31; '''13''' (11):
Gut Microbiome and Its Cofactors Are Linked to Lipoprotein Distribution Profiles. Description: Castro-Mejia, Josue L, et al. Gut Microbiome and Its Cofactors Are Linked to Lipoprotein Distribution Profiles. ''Microorganisms''. 2022 Oct 31; '''10''' (11):
Impact of Stagnation on the Diversity of Cyanobacteria in Drinking Water Treatment Plant Sludge. Description: Jalili, Farhad, et al. Impact of Stagnation on the Diversity of Cyanobacteria in Drinking Water Treatment Plant Sludge. ''Toxins (Basel)''. 2022 Oct 31; '''14''' (11):
Retrospective Analysis of the SARS-CoV-2 Infection Profile in COVID-19 Positive Patients in Vitoria da Conquista, Northeast Brazil. Description: Dantas, Anna Carolina S, et al. Retrospective Analysis of the SARS-CoV-2 Infection Profile in COVID-19 Positive Patients in Vitoria da Conquista, Northeast Brazil. ''Viruses''. 2022 Oct 31; '''14''' (11):
Adapting to climate with limited genetic diversity: Nucleotide, DNA methylation and microbiome variation among populations of the social spider Stegodyphus dumicola. Description: Aagaard, Anne, et al. Adapting to climate with limited genetic diversity: Nucleotide, DNA methylation and microbiome variation among populations of the social spider Stegodyphus dumicola. ''Mol Ecol''. 2022 Nov; '''31''' (22):5765-5783
Atmospheric chemosynthesis is phylogenetically and geographically widespread and contributes significantly to carbon fixation throughout cold deserts. Description: Ray, Angelique E, et al. Atmospheric chemosynthesis is phylogenetically and geographically widespread and contributes significantly to carbon fixation throughout cold deserts. ''ISME J''. 2022 Nov; '''16''' (11):2547-2560
Demonstrating a Comprehensive Wastewater-Based Surveillance Approach That Differentiates Globally Sourced Resistomes. Description: Prieto Riquelme, Maria Virginia, et al. Demonstrating a Comprehensive Wastewater-Based Surveillance Approach That Differentiates Globally Sourced Resistomes. ''Environ Sci Technol''. 2022 Nov 1; '''56''' (21):14982-14993
Dissection of Besnoitia besnoiti intermediate host life cycle stages: From morphology to gene expression. Description: Ramakrishnan, Chandra, et al. Dissection of Besnoitia besnoiti intermediate host life cycle stages: From morphology to gene expression. ''PLoS Pathog''. 2022 Nov; '''18''' (11):e1010955
Divergent evolutionary trajectories of bryophytes and tracheophytes from a complex common ancestor of land plants. Description: Harris, Brogan J, et al. Divergent evolutionary trajectories of bryophytes and tracheophytes from a complex common ancestor of land plants. ''Nat Ecol Evol''. 2022 Nov; '''6''' (11):1634-1643
Functional genomics of the lactic acid bacterium Limosilactobacillus fermentum LAB-1: metabolic, probiotic and biotechnological perspectives. Description: Hossain, Tanim Jabid. Functional genomics of the lactic acid bacterium Limosilactobacillus fermentum LAB-1: metabolic, probiotic and biotechnological perspectives. ''Heliyon''. 2022 Nov; '''8''' (11):e11412
Haplotype-resolved Chinese male genome assembly based on high-fidelity sequencing. Description: Yang, Xiaofei, et al. Haplotype-resolved Chinese male genome assembly based on high-fidelity sequencing. ''Fundam Res''. 2022 Nov; '''2''' (6):946-953
Metagenomic analysis reveals antibiotic resistance genes and virulence factors in the saline-alkali soils from the Yellow River Delta, China. Description: Yang, Chao, et al. Metagenomic analysis reveals antibiotic resistance genes and virulence factors in the saline-alkali soils from the Yellow River Delta, China. ''Environ Res''. 2022 Nov; '''214''' (Pt 2):113823
Metagenomic insights into the spatiotemporal responses of antibiotic resistance genes and microbial communities in aquaculture sediments. Description: Xu, Ming, et al. Metagenomic insights into the spatiotemporal responses of antibiotic resistance genes and microbial communities in aquaculture sediments. ''Chemosphere''. 2022 Nov; '''307''' (Pt 1):135596
Metaproteome plasticity sheds light on the ecology of the rumen microbiome and its connection to host traits. Description: Sasson, Goor, et al. Metaproteome plasticity sheds light on the ecology of the rumen microbiome and its connection to host traits. ''ISME J''. 2022 Nov; '''16''' (11):2610-2621
Molecular detection and characterisation of the first Japanese encephalitis virus belonging to genotype IV acquired in Australia. Description: Sikazwe, Chisha, et al. Molecular detection and characterisation of the first Japanese encephalitis virus belonging to genotype IV acquired in Australia. ''PLoS Negl Trop Dis''. 2022 Nov; '''16''' (11):e0010754
Patiromer for the management of hyperkalemia in heart failure with reduced ejection fraction: the DIAMOND trial. Description: Butler, Javed, et al. Patiromer for the management of hyperkalemia in heart failure with reduced ejection fraction: the DIAMOND trial. ''Eur Heart J''. 2022 Nov 1; '''43''' (41):4362-4373
The pan-genome of Aspergillus fumigatus provides a high-resolution view of its population structure revealing high levels of lineage-specific diversity driven by recombination. Description: Lofgren, Lotus A, et al. The pan-genome of Aspergillus fumigatus provides a high-resolution view of its population structure revealing high levels of lineage-specific diversity driven by recombination. ''PLoS Biol''. 2022 Nov; '''20''' (11):e3001890
Transitioning of People With Type 1 Diabetes From Multiple Daily Injections and Self-Monitoring of Blood Glucose Directly to MiniMed 780G Advanced Hybrid Closed-Loop System: A Two-Center, Randomized, Controlled Study. Description: Matejko, Bartlomiej, et al. Transitioning of People With Type 1 Diabetes From Multiple Daily Injections and Self-Monitoring of Blood Glucose Directly to MiniMed 780G Advanced Hybrid Closed-Loop System: A Two-Center, Randomized, Controlled Study. ''Diabetes Care''. 2022 Nov 1; '''45''' (11):2628-2635
Frequency of occurrence and habitat selection shape the spatial variation in the antibiotic resistome in riverine ecosystems in eastern China. Description: Jiang, Chunxia, et al. Frequency of occurrence and habitat selection shape the spatial variation in the antibiotic resistome in riverine ecosystems in eastern China. ''Environ Microbiome''. 2022 Nov 2; '''17''' (1):53
Immunomodulatory fecal metabolites are associated with mortality in COVID-19 patients with respiratory failure. Description: Stutz, Matthew R, et al. Immunomodulatory fecal metabolites are associated with mortality in COVID-19 patients with respiratory failure. ''Nat Commun''. 2022 Nov 3; '''13''' (1):6615
Metagenomic Insights into Microbial Community Structure, Function, and Salt Adaptation in Saline Soils of Arid Land, China. Description: Yang, Jianjun, et al. Metagenomic Insights into Microbial Community Structure, Function, and Salt Adaptation in Saline Soils of Arid Land, China. ''Microorganisms''. 2022 Nov 3; '''10''' (11):
A chromosome-level assembly of the widely used Rockefeller strain of Aedes aegypti, the yellow fever mosquito. Description: Fisher, Cera R, et al. A chromosome-level assembly of the widely used Rockefeller strain of Aedes aegypti, the yellow fever mosquito. ''G3 (Bethesda)''. 2022 Nov 4; '''12''' (11):
Genomic remnants of ancestral methanogenesis and hydrogenotrophy in Archaea drive anaerobic carbon cycling. Description: Adam, Panagiotis S, et al. Genomic remnants of ancestral methanogenesis and hydrogenotrophy in Archaea drive anaerobic carbon cycling. ''Sci Adv''. 2022 Nov 4; '''8''' (44):eabm9651
Identification and Expression Analysis of Odorant-Binding and Chemosensory Protein Genes in Virus Vector Nephotettix cincticeps. Description: Chang, Xuefei, et al. Identification and Expression Analysis of Odorant-Binding and Chemosensory Protein Genes in Virus Vector Nephotettix cincticeps. ''Insects''. 2022 Nov 5; '''13''' (11):
Clinical and In Vitro Evidence Favoring Immunoglobulin Treatment of a Chronic Norovirus Infection in a Patient With Common Variable Immunodeficiency. Description: van Kampen, Jeroen J A, et al. Clinical and In Vitro Evidence Favoring Immunoglobulin Treatment of a Chronic Norovirus Infection in a Patient With Common Variable Immunodeficiency. ''J Infect Dis''. 2022 Nov 11; '''226''' (10):1781-1789
Inactivation of the MSTN gene expression changes the composition and function of the gut microbiome in sheep. Description: Du, Chenchen, et al. Inactivation of the MSTN gene expression changes the composition and function of the gut microbiome in sheep. ''BMC Microbiol''. 2022 Nov 11; '''22''' (1):273
Integrated next-generation sequencing and comparative transcriptomic analysis of leaves provides novel insights into the ethylene pathway of Chrysanthemum morifolium in response to a Chinese isolate of chrysanthemum virus B. Description: Zhong, Xueting, et al. Integrated next-generation sequencing and comparative transcriptomic analysis of leaves provides novel insights into the ethylene pathway of Chrysanthemum morifolium in response to a Chinese isolate of chrysanthemum virus B. ''Virol J''. 2022 Nov 11; '''19''' (1):182
Reaction of Pertechnetate in Highly Alkaline Solution: Synthesis and Characterization of the Nitridotrioxotechnetate Ba[TcO(3) N]. Description: Badea, D, et al. Reaction of Pertechnetate in Highly Alkaline Solution: Synthesis and Characterization of the Nitridotrioxotechnetate Ba[TcO(3) N]. ''Chemistry''. 2022 Nov 11; '''28''' (63):e202201738
Patterns of Genomic Variations in the Plant Pathogen Dickeya solani. Description: Khayi, Slimane, et al. Patterns of Genomic Variations in the Plant Pathogen Dickeya solani. ''Microorganisms''. 2022 Nov 14; '''10''' (11):
The cancer chemotherapeutic 5-fluorouracil is a potent Fusobacterium nucleatum inhibitor and its activity is modified by intratumoral microbiota. Description: LaCourse, Kaitlyn D, et al. The cancer chemotherapeutic 5-fluorouracil is a potent Fusobacterium nucleatum inhibitor and its activity is modified by intratumoral microbiota. ''Cell Rep''. 2022 Nov 15; '''41''' (7):111625
Adaptation of a microbial community to demand-oriented biological methanation. Description: Khesali Aghtaei, Hoda, et al. Adaptation of a microbial community to demand-oriented biological methanation. ''Biotechnol Biofuels Bioprod''. 2022 Nov 16; '''15''' (1):125
Genomic Analysis to Elucidate the Lignocellulose Degrading Capability of a New Halophile Robertkochia solimangrovi. Description: Lam, Ming Quan, et al. Genomic Analysis to Elucidate the Lignocellulose Degrading Capability of a New Halophile Robertkochia solimangrovi. ''Genes (Basel)''. 2022 Nov 17; '''13''' (11):
Discovery of integrons in Archaea: Platforms for cross-domain gene transfer. Description: Ghaly, Timothy M, et al. Discovery of integrons in Archaea: Platforms for cross-domain gene transfer. ''Sci Adv''. 2022 Nov 18; '''8''' (46):eabq6376
Plasmid Genomes Reveal the Distribution, Abundance, and Organization of Mercury-Related Genes and Their Co-Distribution with Antibiotic Resistant Genes in Gammaproteobacteria. Description: Li, Xiangyang, et al. Plasmid Genomes Reveal the Distribution, Abundance, and Organization of Mercury-Related Genes and Their Co-Distribution with Antibiotic Resistant Genes in Gammaproteobacteria. ''Genes (Basel)''. 2022 Nov 18; '''13''' (11):
binny: an automated binning algorithm to recover high-quality genomes from complex metagenomic datasets. Description: Hickl, Oskar, et al. binny: an automated binning algorithm to recover high-quality genomes from complex metagenomic datasets. ''Brief Bioinform''. 2022 Nov 19; '''23''' (6):
First Report and Comparative Genomic Analysis of Mycoplasma capricolum subsp. capricolum HN-B in Hainan Island, China. Description: Zhang, Zhenxing, et al. First Report and Comparative Genomic Analysis of Mycoplasma capricolum subsp. capricolum HN-B in Hainan Island, China. ''Microorganisms''. 2022 Nov 19; '''10''' (11):
The Impact of Sleep Disturbance on Gut Microbiota, Atrial Substrate, and Atrial Fibrillation Inducibility in Mice: A Multi-Omics Analysis. Description: Zuo, Kun, et al. The Impact of Sleep Disturbance on Gut Microbiota, Atrial Substrate, and Atrial Fibrillation Inducibility in Mice: A Multi-Omics Analysis. ''Metabolites''. 2022 Nov 20; '''12''' (11):
Absorbable Electrospun Poly-4-hydroxybutyrate Scaffolds as a Potential Solution for Pelvic Organ Prolapse Surgery. Description: Verhorstert, Kim, et al. Absorbable Electrospun Poly-4-hydroxybutyrate Scaffolds as a Potential Solution for Pelvic Organ Prolapse Surgery. ''ACS Appl Bio Mater''. 2022 Nov 21; '''5''' (11):5270-5280
Genomic signatures of recent convergent transitions to social life in spiders. Description: Tong, Chao, et al. Genomic signatures of recent convergent transitions to social life in spiders. ''Nat Commun''. 2022 Nov 22; '''13''' (1):6967
MarpolBase Expression: A Web-Based, Comprehensive Platform for Visualization and Analysis of Transcriptomes in the Liverwort Marchantia polymorpha. Description: Kawamura, Shogo, et al. MarpolBase Expression: A Web-Based, Comprehensive Platform for Visualization and Analysis of Transcriptomes in the Liverwort Marchantia polymorpha. ''Plant Cell Physiol''. 2022 Nov 22; '''63''' (11):1745-1755
Genome sequence and silkomics of the spindle ermine moth, Yponomeuta cagnagella, representing the early diverging lineage of the ditrysian Lepidoptera. Description: Volenikova, Anna, et al. Genome sequence and silkomics of the spindle ermine moth, Yponomeuta cagnagella, representing the early diverging lineage of the ditrysian Lepidoptera. ''Commun Biol''. 2022 Nov 23; '''5''' (1):1281
The extrachromosomal circular DNAs of the rice blast pathogen Magnaporthe oryzae contain a wide variety of LTR retrotransposons, genes, and effectors. Description: Joubert, Pierre M, et al. The extrachromosomal circular DNAs of the rice blast pathogen Magnaporthe oryzae contain a wide variety of LTR retrotransposons, genes, and effectors. ''BMC Biol''. 2022 Nov 23; '''20''' (1):260
Genomic and Metabolomic Analyses of the Medicinal Fungus Inonotus hispidus for Its Metabolite's Biosynthesis and Medicinal Application. Description: Zhang, Rui-Qi, et al. Genomic and Metabolomic Analyses of the Medicinal Fungus Inonotus hispidus for Its Metabolite's Biosynthesis and Medicinal Application. ''J Fungi (Basel)''. 2022 Nov 25; '''8''' (12):
A large-scale benchmark study of tools for the classification of protein-coding and non-coding RNAs. Description: Singh, Dalwinder, et al. A large-scale benchmark study of tools for the classification of protein-coding and non-coding RNAs. ''Nucleic Acids Res''. 2022 Nov 28; '''50''' (21):12094-12111
Characteristics of the Genome, Transcriptome and Ganoderic Acid of the Medicinal Fungus Ganoderma lingzhi. Description: Wu, Qiang, et al. Characteristics of the Genome, Transcriptome and Ganoderic Acid of the Medicinal Fungus Ganoderma lingzhi. ''J Fungi (Basel)''. 2022 Nov 28; '''8''' (12):
Genomic analysis and in vivo efficacy of Pediococcus acidilactici as a potential probiotic to prevent hyperglycemia, hypercholesterolemia and gastrointestinal infections. Description: Al-Emran, Hassan M, et al. Genomic analysis and in vivo efficacy of Pediococcus acidilactici as a potential probiotic to prevent hyperglycemia, hypercholesterolemia and gastrointestinal infections. ''Sci Rep''. 2022 Nov 28; '''12''' (1):20429
Inflammatory Bowel Disease-Associated Gut Commensals Degrade Components of the Extracellular Matrix. Description: Porras, Ana Maria, et al. Inflammatory Bowel Disease-Associated Gut Commensals Degrade Components of the Extracellular Matrix. ''mBio''. 2022 Nov 29; '''13''' (6):e0220122
Chromosome-level genome of a leaf vegetable Glebionis coronaria provides insights into the biosynthesis of monoterpenoids contributing to its special aroma. Description: Wang, Sen, et al. Chromosome-level genome of a leaf vegetable Glebionis coronaria provides insights into the biosynthesis of monoterpenoids contributing to its special aroma. ''DNA Res''. 2022 Dec 1; '''29''' (6):
Chromosome-scale genome assembly of Glycyrrhiza uralensis revealed metabolic gene cluster centred specialized metabolites biosynthesis. Description: Rai, Amit, et al. Chromosome-scale genome assembly of Glycyrrhiza uralensis revealed metabolic gene cluster centred specialized metabolites biosynthesis. ''DNA Res''. 2022 Dec 1; '''29''' (6):
Comparative genomics of Lactobacillaceae from the gut of honey bees, Apis mellifera, from the Eastern United States. Description: Bradford, Emma L, et al. Comparative genomics of Lactobacillaceae from the gut of honey bees, Apis mellifera, from the Eastern United States. ''G3 (Bethesda)''. 2022 Dec 1; '''12''' (12):
Cost-Effectiveness of a Real-Time Continuous Glucose Monitoring System Versus Self-Monitoring of Blood Glucose in People with Type 2 Diabetes on Insulin Therapy in the UK. Description: Isitt, John J, et al. Cost-Effectiveness of a Real-Time Continuous Glucose Monitoring System Versus Self-Monitoring of Blood Glucose in People with Type 2 Diabetes on Insulin Therapy in the UK. ''Diabetes Ther''. 2022 Dec; '''13''' (11-12):1875-1890
De novo whole-genome assembly in an interspecific hybrid table grape, 'Shine Muscat'. Description: Shirasawa, Kenta, et al. De novo whole-genome assembly in an interspecific hybrid table grape, 'Shine Muscat'. ''DNA Res''. 2022 Dec 1; '''29''' (6):
Diverse viromes in polar regions: A retrospective study of metagenomic data from Antarctic animal feces and Arctic frozen soil in 2012-2014. Description: Wang, Jun, et al. Diverse viromes in polar regions: A retrospective study of metagenomic data from Antarctic animal feces and Arctic frozen soil in 2012-2014. ''Virol Sin''. 2022 Dec; '''37''' (6):883-893
Epigenetic rewiring of pathways related to odour perception in immune cells exposed to SARS-CoV-2 in vivo and in vitro. Description: Huoman, Johanna, et al. Epigenetic rewiring of pathways related to odour perception in immune cells exposed to SARS-CoV-2 in vivo and in vitro. ''Epigenetics''. 2022 Dec; '''17''' (13):1875-1891
Evidence for evolutionary adaptation of mixotrophic nanoflagellates to warmer temperatures. Description: Lepori-Bui, Michelle, et al. Evidence for evolutionary adaptation of mixotrophic nanoflagellates to warmer temperatures. ''Glob Chang Biol''. 2022 Dec; '''28''' (23):7094-7107
Genetic and physiological insights into the diazotrophic activity of a non-cyanobacterial marine diazotroph. Description: Joublin-Delavat, Aurelie, et al. Genetic and physiological insights into the diazotrophic activity of a non-cyanobacterial marine diazotroph. ''Environ Microbiol''. 2022 Dec; '''24''' (12):6510-6523
Genomic diversity and biosynthetic capabilities of sponge-associated chlamydiae. Description: Dharamshi, Jennah E, et al. Genomic diversity and biosynthetic capabilities of sponge-associated chlamydiae. ''ISME J''. 2022 Dec; '''16''' (12):2725-2740
Improved assembly and annotation of the sesame genome. Description: Wang, Mingcheng, et al. Improved assembly and annotation of the sesame genome. ''DNA Res''. 2022 Dec 1; '''29''' (6):
Improved pre-test likelihood estimation of coronary artery disease using phonocardiography. Description: Larsen, Bjarke Skogstad, et al. Improved pre-test likelihood estimation of coronary artery disease using phonocardiography. ''Eur Heart J Digit Health''. 2022 Dec; '''3''' (4):600-609
Investigation of Streptomyces sp. Strain EMB24 Secondary Metabolite Profile Has Unraveled Its Extraordinary Antibacterial Potency Against Drug-Resistant Bacteria. Description: Goel, Nikky, et al. Investigation of Streptomyces sp. Strain EMB24 Secondary Metabolite Profile Has Unraveled Its Extraordinary Antibacterial Potency Against Drug-Resistant Bacteria. ''Mar Biotechnol (NY)''. 2022 Dec; '''24''' (6):1168-1175
Novel RNA viruses in oysters revealed by virome. Description: Zhu, Peng, et al. Novel RNA viruses in oysters revealed by virome. ''Imeta''. 2022 Dec; '''1''' (4):e65
Plant pathogens provide clues to the potential origin of bat white-nose syndrome Pseudogymnoascus destructans. Description: Meteyer, Carol Uphoff, et al. Plant pathogens provide clues to the potential origin of bat white-nose syndrome Pseudogymnoascus destructans. ''Virulence''. 2022 Dec; '''13''' (1):1020-1031
The genome sequence of Hirschfeldia incana, a new Brassicaceae model to improve photosynthetic light-use efficiency. Description: Garassino, Francesco, et al. The genome sequence of Hirschfeldia incana, a new Brassicaceae model to improve photosynthetic light-use efficiency. ''Plant J''. 2022 Dec; '''112''' (5):1298-1315
The SWC4 subunit of the SWR1 chromatin remodeling complex is involved in varying virulence of Metarhizium brunneum isolates offering role of epigenetic regulation of pathogenicity. Description: Reingold, Victoria, et al. The SWC4 subunit of the SWR1 chromatin remodeling complex is involved in varying virulence of Metarhizium brunneum isolates offering role of epigenetic regulation of pathogenicity. ''Virulence''. 2022 Dec; '''13''' (1):1252-1269
Zinc oxide nanoparticles and spironolactone-enhanced Nrf2/HO-1 pathway and inhibited Wnt/beta-catenin pathway in adenine-induced nephrotoxicity in rats. Description: Awadalla, Amira, et al. Zinc oxide nanoparticles and spironolactone-enhanced Nrf2/HO-1 pathway and inhibited Wnt/beta-catenin pathway in adenine-induced nephrotoxicity in rats. ''Redox Rep''. 2022 Dec; '''27''' (1):249-258
Population structure of an Antarctic aquatic cyanobacterium. Description: Panwar, Pratibha, et al. Population structure of an Antarctic aquatic cyanobacterium. ''Microbiome''. 2022 Dec 2; '''10''' (1):207
The microbiome's fiber degradation profile and its relationship with the host diet. Description: Cohen, Yotam, et al. The microbiome's fiber degradation profile and its relationship with the host diet. ''BMC Biol''. 2022 Dec 5; '''20''' (1):266
New globally distributed bacterial phyla within the FCB superphylum. Description: Gong, Xianzhe, et al. New globally distributed bacterial phyla within the FCB superphylum. ''Nat Commun''. 2022 Dec 6; '''13''' (1):7516
Enhanced Arbovirus Surveillance with High-Throughput Metatranscriptomic Processing of Field-Collected Mosquitoes. Description: Batovska, Jana, et al. Enhanced Arbovirus Surveillance with High-Throughput Metatranscriptomic Processing of Field-Collected Mosquitoes. ''Viruses''. 2022 Dec 11; '''14''' (12):
Integrated multi-omics of the gastrointestinal microbiome and ruminant host reveals metabolic adaptation underlying early life development. Description: Yan, Xiaoting, et al. Integrated multi-omics of the gastrointestinal microbiome and ruminant host reveals metabolic adaptation underlying early life development. ''Microbiome''. 2022 Dec 12; '''10''' (1):222
Mapping single-cell transcriptomes in the intra-tumoral and associated territories of kidney cancer. Description: Li, Ruoyan, et al. Mapping single-cell transcriptomes in the intra-tumoral and associated territories of kidney cancer. ''Cancer Cell''. 2022 Dec 12; '''40''' (12):1583-1599.e10
Evidence for Widespread Class II Microcins in Enterobacterales Genomes. Description: Cole, T Jeffrey, et al. Evidence for Widespread Class II Microcins in Enterobacterales Genomes. ''Appl Environ Microbiol''. 2022 Dec 13; '''88''' (23):e0148622
Cell-Penetrating Peptide-Peptide Nucleic Acid Conjugates as a Tool for Protein Functional Elucidation in the Native Bacterium. Description: Yokoi, Yasuhito, et al. Cell-Penetrating Peptide-Peptide Nucleic Acid Conjugates as a Tool for Protein Functional Elucidation in the Native Bacterium. ''Molecules''. 2022 Dec 15; '''27''' (24):
Impact of HIV infection and integrase strand transfer inhibitors-based treatment on the gut virome. Description: Villoslada-Blanco, Pablo, et al. Impact of HIV infection and integrase strand transfer inhibitors-based treatment on the gut virome. ''Sci Rep''. 2022 Dec 15; '''12''' (1):21658
A Non-Gradual Development Process of Cicada Eyes at the End of the Fifth-Instar Nymphal Stage to Obtain Visual Ability. Description: Su, Minjing, et al. A Non-Gradual Development Process of Cicada Eyes at the End of the Fifth-Instar Nymphal Stage to Obtain Visual Ability. ''Insects''. 2022 Dec 16; '''13''' (12):
Single-Molecule Real-Time Sequencing of Full-Length Transcriptome and Identification of Genes Related to Male Development in Cannabis sativa. Description: Jiang, Hui, et al. Single-Molecule Real-Time Sequencing of Full-Length Transcriptome and Identification of Genes Related to Male Development in Cannabis sativa. ''Plants (Basel)''. 2022 Dec 16; '''11''' (24):
The Sugar Metabolic Model of Aspergillus niger Can Only Be Reliably Transferred to Fungi of Its Phylum. Description: Li, Jiajia, et al. The Sugar Metabolic Model of Aspergillus niger Can Only Be Reliably Transferred to Fungi of Its Phylum. ''J Fungi (Basel)''. 2022 Dec 17; '''8''' (12):
Comparative Genomic Insights into the Evolution of Halobacteria-Associated "Candidatus Nanohaloarchaeota". Description: Zhao, Dahe, et al. Comparative Genomic Insights into the Evolution of Halobacteria-Associated "Candidatus Nanohaloarchaeota". ''mSystems''. 2022 Dec 20; '''7''' (6):e0066922
Elimination of Foreign Sequences in Eukaryotic Viral Reference Genomes Improves the Accuracy of Virome Analysis. Description: Chen, Junjie, et al. Elimination of Foreign Sequences in Eukaryotic Viral Reference Genomes Improves the Accuracy of Virome Analysis. ''mSystems''. 2022 Dec 20; '''7''' (6):e0090722
Function-Based Rhizosphere Assembly along a Gradient of Desiccation in the Former Aral Sea. Description: Wicaksono, Wisnu Adi, et al. Function-Based Rhizosphere Assembly along a Gradient of Desiccation in the Former Aral Sea. ''mSystems''. 2022 Dec 20; '''7''' (6):e0073922
Genomic diversification of the specialized parasite of the fungus-growing ant symbiosis. Description: Gotting, Kirsten, et al. Genomic diversification of the specialized parasite of the fungus-growing ant symbiosis. ''Proc Natl Acad Sci U S A''. 2022 Dec 20; '''119''' (51):e2213096119
Independent Evolution Has Led to Distinct Genomic Signatures in Dutch Elm Disease-Causing Fungi and Other Vascular Wilts-Causing Fungal Pathogens. Description: Fijarczyk, Anna, et al. Independent Evolution Has Led to Distinct Genomic Signatures in Dutch Elm Disease-Causing Fungi and Other Vascular Wilts-Causing Fungal Pathogens. ''J Fungi (Basel)''. 2022 Dec 20; '''9''' (1):
Long-Read Metagenome-Assembled Genomes Improve Identification of Novel Complete Biosynthetic Gene Clusters in a Complex Microbial Activated Sludge Ecosystem. Description: Sanchez-Navarro, Roberto, et al. Long-Read Metagenome-Assembled Genomes Improve Identification of Novel Complete Biosynthetic Gene Clusters in a Complex Microbial Activated Sludge Ecosystem. ''mSystems''. 2022 Dec 20; '''7''' (6):e0063222
Long-Read Sequencing Improves Recovery of Picoeukaryotic Genomes and Zooplankton Marker Genes from Marine Metagenomes. Description: Patin, N V, et al. Long-Read Sequencing Improves Recovery of Picoeukaryotic Genomes and Zooplankton Marker Genes from Marine Metagenomes. ''mSystems''. 2022 Dec 20; '''7''' (6):e0059522
Metabolic Potential of Microbial Communities in the Hypersaline Sediments of the Bonneville Salt Flats. Description: McGonigle, Julia M, et al. Metabolic Potential of Microbial Communities in the Hypersaline Sediments of the Bonneville Salt Flats. ''mSystems''. 2022 Dec 20; '''7''' (6):e0084622
Selection for Translational Efficiency in Genes Associated with Alphaproteobacterial Gene Transfer Agents. Description: Kogay, Roman, et al. Selection for Translational Efficiency in Genes Associated with Alphaproteobacterial Gene Transfer Agents. ''mSystems''. 2022 Dec 20; '''7''' (6):e0089222
A Catalog of over 5,000 Metagenome-Assembled Microbial Genomes from the Caprinae Gut Microbiota. Description: Zhang, Xiao-Xuan, et al. A Catalog of over 5,000 Metagenome-Assembled Microbial Genomes from the Caprinae Gut Microbiota. ''Microbiol Spectr''. 2022 Dec 21; '''10''' (6):e0221122
Alginate Alleviates Dextran Sulfate Sodium-Induced Colitis by Promoting Bifidobacterium animalis and Intestinal Hyodeoxycholic Acid Synthesis in Mice. Description: Pi, Yu, et al. Alginate Alleviates Dextran Sulfate Sodium-Induced Colitis by Promoting Bifidobacterium animalis and Intestinal Hyodeoxycholic Acid Synthesis in Mice. ''Microbiol Spectr''. 2022 Dec 21; '''10''' (6):e0297922
A Novel Inovirus Reprograms Metabolism and Motility of Marine Alteromonas. Description: Jia, Kuntong, et al. A Novel Inovirus Reprograms Metabolism and Motility of Marine Alteromonas. ''Microbiol Spectr''. 2022 Dec 21; '''10''' (6):e0338822
Comparative Genomics of the Genus Pseudomonas Reveals Host- and Environment-Specific Evolution. Description: Saati-Santamaria, Zaki, et al. Comparative Genomics of the Genus Pseudomonas Reveals Host- and Environment-Specific Evolution. ''Microbiol Spectr''. 2022 Dec 21; '''10''' (6):e0237022
Cyanobacterial Blooms Are Not a Result of Positive Selection by Freshwater Eutrophication. Description: Yu, Yang, et al. Cyanobacterial Blooms Are Not a Result of Positive Selection by Freshwater Eutrophication. ''Microbiol Spectr''. 2022 Dec 21; '''10''' (6):e0319422
Distributional Pattern of Bacteria, Protists, and Diatoms in Ocean according to Water Depth in the Northern South China Sea. Description: Xu, Shannan, et al. Distributional Pattern of Bacteria, Protists, and Diatoms in Ocean according to Water Depth in the Northern South China Sea. ''Microbiol Spectr''. 2022 Dec 21; '''10''' (6):e0275921
In Silico Characterization of bla(NDM)-Harboring Conjugative Plasmids in Acinetobacter Species. Description: Tang, Biao, et al. In Silico Characterization of bla(NDM)-Harboring Conjugative Plasmids in Acinetobacter Species. ''Microbiol Spectr''. 2022 Dec 21; '''10''' (6):e0210222
Investigation of the Virome and Characterization of Issyk-Kul Virus from Swedish Myotis brandtii Bats. Description: Cholleti, Harindranath, et al. Investigation of the Virome and Characterization of Issyk-Kul Virus from Swedish Myotis brandtii Bats. ''Pathogens''. 2022 Dec 21; '''12''' (1):
Proteome-wide 3D structure prediction provides insights into the ancestral metabolism of ancient archaea and bacteria. Description: Zhao, Weishu, et al. Proteome-wide 3D structure prediction provides insights into the ancestral metabolism of ancient archaea and bacteria. ''Nat Commun''. 2022 Dec 21; '''13''' (1):7861
Unveiling the Wheat Microbiome under Varied Agricultural Field Conditions. Description: Jaiswal, Sarika, et al. Unveiling the Wheat Microbiome under Varied Agricultural Field Conditions. ''Microbiol Spectr''. 2022 Dec 21; '''10''' (6):e0263322
Virome Analysis of Normal and Growth Retardation Disease-Affected Macrobrachium rosenbergii. Description: Zhou, Dandan, et al. Virome Analysis of Normal and Growth Retardation Disease-Affected Macrobrachium rosenbergii. ''Microbiol Spectr''. 2022 Dec 21; '''10''' (6):e0146222
Chromosome-level genome assembly of the Siberian chipmunk (Tamias sibiricus). Description: Li, Ran, et al. Chromosome-level genome assembly of the Siberian chipmunk (Tamias sibiricus). ''Sci Data''. 2022 Dec 24; '''9''' (1):783
Degradation pathways for organic matter of terrestrial origin are widespread and expressed in Arctic Ocean microbiomes. Description: Grevesse, Thomas, et al. Degradation pathways for organic matter of terrestrial origin are widespread and expressed in Arctic Ocean microbiomes. ''Microbiome''. 2022 Dec 24; '''10''' (1):237
Gut microbiota as an antioxidant system in centenarians associated with high antioxidant activities of gut-resident Lactobacillus. Description: Wu, Lei, et al. Gut microbiota as an antioxidant system in centenarians associated with high antioxidant activities of gut-resident Lactobacillus. ''NPJ Biofilms Microbiomes''. 2022 Dec 24; '''8''' (1):102
Inflammatory microbes and genes as potential biomarkers of Parkinson's disease. Description: Nie, Shiqing, et al. Inflammatory microbes and genes as potential biomarkers of Parkinson's disease. ''NPJ Biofilms Microbiomes''. 2022 Dec 24; '''8''' (1):101
Virus diversity and interactions with hosts in deep-sea hydrothermal vents. Description: Cheng, Ruolin, et al. Virus diversity and interactions with hosts in deep-sea hydrothermal vents. ''Microbiome''. 2022 Dec 24; '''10''' (1):235
Evaluating the ecological hypothesis: early life salivary microbiome assembly predicts dental caries in a longitudinal case-control study. Description: Blostein, Freida, et al. Evaluating the ecological hypothesis: early life salivary microbiome assembly predicts dental caries in a longitudinal case-control study. ''Microbiome''. 2022 Dec 26; '''10''' (1):240
Bromine Pentafluoride BrF(5) , the Formation of [BrF(6) ](-) Salts, and the Stereochemical (In)activity of the Bromine Lone Pairs. Description: Mobs, Martin, et al. Bromine Pentafluoride BrF(5) , the Formation of [BrF(6) ](-) Salts, and the Stereochemical (In)activity of the Bromine Lone Pairs. ''Chemistry''. 2022 Dec 27; '''28''' (72):e202202466
Phage-Host Prediction Using a Computational Tool Coupled with 16S rRNA Gene Amplicon Sequencing. Description: Andrianjakarivony, Harilanto Felana, et al. Phage-Host Prediction Using a Computational Tool Coupled with 16S rRNA Gene Amplicon Sequencing. ''Viruses''. 2022 Dec 27; '''15''' (1):
The gold-ringed octopus (Amphioctopus fangsiao) genome and cerebral single-nucleus transcriptomes provide insights into the evolution of karyotype and neural novelties. Description: Jiang, Dianhang, et al. The gold-ringed octopus (Amphioctopus fangsiao) genome and cerebral single-nucleus transcriptomes provide insights into the evolution of karyotype and neural novelties. ''BMC Biol''. 2022 Dec 27; '''20''' (1):289
A high-quality pseudo-phased genome for Melaleuca quinquenervia shows allelic diversity of NLR-type resistance genes. Description: Chen, Stephanie H, et al. A high-quality pseudo-phased genome for Melaleuca quinquenervia shows allelic diversity of NLR-type resistance genes. ''Gigascience''. 2022 Dec 28; '''12''':
The chromosome-level genome of Chinese praying mantis Tenodera sinensis (Mantodea: Mantidae) reveals its biology as a predator. Description: Yuan, Ruizhong, et al. The chromosome-level genome of Chinese praying mantis Tenodera sinensis (Mantodea: Mantidae) reveals its biology as a predator. ''Gigascience''. 2022 Dec 28; '''12''':
Metagenomic analysis reveals unexplored diversity of archaeal virome in the human gut. Description: Li, Ran, et al. Metagenomic analysis reveals unexplored diversity of archaeal virome in the human gut. ''Nat Commun''. 2022 Dec 29; '''13''' (1):7978
Antibiotic Susceptibility, Resistance Gene Determinants and Corresponding Genomic Regions in Lactobacillus amylovorus Isolates Derived from Wild Boars and Domestic Pigs. Description: Moravkova, Monika, et al. Antibiotic Susceptibility, Resistance Gene Determinants and Corresponding Genomic Regions in Lactobacillus amylovorus Isolates Derived from Wild Boars and Domestic Pigs. ''Microorganisms''. 2022 Dec 30; '''11''' (1):
Mapping the early life gut microbiome in neonates with critical congenital heart disease: multiomics insights and implications for host metabolic and immunological health. Description: Huang, Yuan, et al. Mapping the early life gut microbiome in neonates with critical congenital heart disease: multiomics insights and implications for host metabolic and immunological health. ''Microbiome''. 2022 Dec 30; '''10''' (1):245
A 1.5-Mb continuous endogenous viral region in the arbuscular mycorrhizal fungus Rhizophagus irregularis. Description: Zhao, Hongda, et al. A 1.5-Mb continuous endogenous viral region in the arbuscular mycorrhizal fungus Rhizophagus irregularis. ''Virus Evol''. 2023; '''9''' (2):vead064
Abundance and prevalence of ESBL coding genes in patients undergoing first line eradication therapy for Helicobacter pylori. Description: Gudra, Dita, et al. Abundance and prevalence of ESBL coding genes in patients undergoing first line eradication therapy for Helicobacter pylori. ''PLoS One''. 2023; '''18''' (8):e0289879
A collection of Trichoderma isolates from natural environments in Sardinia reveals a complex virome that includes negative-sense fungal viruses with unprecedented genome organizations. Description: Pagnoni, Saul, et al. A collection of Trichoderma isolates from natural environments in Sardinia reveals a complex virome that includes negative-sense fungal viruses with unprecedented genome organizations. ''Virus Evol''. 2023; '''9''' (2):vead042
A distinct microbiota signature precedes the clinical diagnosis of hepatocellular carcinoma. Description: Yang, Jinhuan, et al. A distinct microbiota signature precedes the clinical diagnosis of hepatocellular carcinoma. ''Gut Microbes''. 2023 Jan-Dec; '''15''' (1):2201159
African eggplant-associated virus: Characterization of a novel tobamovirus identified from Solanum macrocarpon and assessment of its potential impact on tomato and pepper crops. Description: Giesbers, Anne K J, et al. African eggplant-associated virus: Characterization of a novel tobamovirus identified from Solanum macrocarpon and assessment of its potential impact on tomato and pepper crops. ''PLoS One''. 2023; '''18''' (4):e0277840
A glossy mutant in onion (Allium cepa L.) shows decreased expression of wax biosynthesis genes. Description: Manape, Tushar Kashinath, et al. A glossy mutant in onion (Allium cepa L.) shows decreased expression of wax biosynthesis genes. ''Front Plant Sci''. 2023; '''14''': 1245308
A splicing site change between exon 5 and 6 of the nuclear-encoded chloroplast-localized HvYGL8 gene results in reduced chlorophyll content and plant height in barley. Description: Xia, Xue, et al. A splicing site change between exon 5 and 6 of the nuclear-encoded chloroplast-localized HvYGL8 gene results in reduced chlorophyll content and plant height in barley. ''Front Plant Sci''. 2023; '''14''': 1327246
Assembly of novel microbial genomes from gut metagenomes of rhesus macaque (Macaca mulatta). Description: Yang, Shengzhi, et al. Assembly of novel microbial genomes from gut metagenomes of rhesus macaque (Macaca mulatta). ''Gut Microbes''. 2023 Jan-Dec; '''15''' (1):2188848
Associated bacterial communities, confrontation studies, and comparative genomics reveal important interactions between Morchella with Pseudomonas spp. Description: Cailleau, Guillaume, et al. Associated bacterial communities, confrontation studies, and comparative genomics reveal important interactions between Morchella with Pseudomonas spp. ''Front Fungal Biol''. 2023; '''4''': 1285531
Benefits of Gut Microbiota Reconstitution by Beta 1,3-1,6 Glucans in Subjects with Autism Spectrum Disorder and Other Neurodegenerative Diseases. Description: Raghavan, Kadalraja, et al. Benefits of Gut Microbiota Reconstitution by Beta 1,3-1,6 Glucans in Subjects with Autism Spectrum Disorder and Other Neurodegenerative Diseases. ''J Alzheimers Dis''. 2023; '''94''' (s1):S241-S252
Both Disease Activity and HLA-B27 Status Are Associated With Gut Microbiome Dysbiosis in Spondyloarthritis Patients. Description: Berland, Magali, et al. Both Disease Activity and HLA-B27 Status Are Associated With Gut Microbiome Dysbiosis in Spondyloarthritis Patients. ''Arthritis Rheumatol''. 2023 Jan; '''75''' (1):41-52
Cascading effects of prey identity on gene expression in a kleptoplastidic ciliate. Description: Paight, Christopher, et al. Cascading effects of prey identity on gene expression in a kleptoplastidic ciliate. ''J Eukaryot Microbiol''. 2023 Jan; '''70''' (1):e12940
Chaihu Shugan prevents cholesterol gallstone formation by ameliorating the microbiota dysbiosis and metabolic disturbance in mice. Description: Wang, Wei, et al. Chaihu Shugan prevents cholesterol gallstone formation by ameliorating the microbiota dysbiosis and metabolic disturbance in mice. ''Front Pharmacol''. 2023; '''14''': 1291236
Characterization of Bifidobacterium kashiwanohense that utilizes both milk- and plant-derived oligosaccharides. Description: Orihara, Kento, et al. Characterization of Bifidobacterium kashiwanohense that utilizes both milk- and plant-derived oligosaccharides. ''Gut Microbes''. 2023 Jan-Dec; '''15''' (1):2207455
Cold stress induces differential gene expression of retained homeologs in Camelina sativa cv Suneson. Description: Fang, Chao, et al. Cold stress induces differential gene expression of retained homeologs in Camelina sativa cv Suneson. ''Front Plant Sci''. 2023; '''14''': 1271625
Complex organic matter degradation by secondary consumers in chemolithoautotrophy-based subsurface geothermal ecosystems. Description: Paul, Raegan, et al. Complex organic matter degradation by secondary consumers in chemolithoautotrophy-based subsurface geothermal ecosystems. ''PLoS One''. 2023; '''18''' (8):e0281277
Construction of a de novo assembly pipeline using multiple transcriptome data sets from Cypripedium macranthos (Orchidaceae). Description: Kambara, Kota, et al. Construction of a de novo assembly pipeline using multiple transcriptome data sets from Cypripedium macranthos (Orchidaceae). ''PLoS One''. 2023; '''18''' (6):e0286804
D-amino Acids Ameliorate Experimental Colitis and Cholangitis by Inhibiting Growth of Proteobacteria: Potential Therapeutic Role in Inflammatory Bowel Disease. Description: Umeda, Satoko, et al. D-amino Acids Ameliorate Experimental Colitis and Cholangitis by Inhibiting Growth of Proteobacteria: Potential Therapeutic Role in Inflammatory Bowel Disease. ''Cell Mol Gastroenterol Hepatol''. 2023; '''16''' (6):1011-1031
Disentangling hindgut metabolism in the American cockroach through single-cell genomics and metatranscriptomics. Description: Dukes, Helen E, et al. Disentangling hindgut metabolism in the American cockroach through single-cell genomics and metatranscriptomics. ''Front Microbiol''. 2023; '''14''': 1156809
Diversity and correlation analysis of different root exudates on the regulation of microbial structure and function in soil planted with Panax notoginseng. Description: Shi, Huineng, et al. Diversity and correlation analysis of different root exudates on the regulation of microbial structure and function in soil planted with Panax notoginseng. ''Front Microbiol''. 2023; '''14''': 1282689
Feasibility insights into the application of Paenibacillus pabuli E1 in animal feed to eliminate non-starch polysaccharides. Description: Li, Gen, et al. Feasibility insights into the application of Paenibacillus pabuli E1 in animal feed to eliminate non-starch polysaccharides. ''Front Microbiol''. 2023; '''14''': 1205767
First genome assembly and annotation of Sanghuangporus weigelae uncovers its medicinal functions, metabolic pathways, and evolution. Description: Jin, Can, et al. First genome assembly and annotation of Sanghuangporus weigelae uncovers its medicinal functions, metabolic pathways, and evolution. ''Front Cell Infect Microbiol''. 2023; '''13''': 1325418
Gene gain facilitated endosymbiotic evolution of Chlamydiae. Description: Dharamshi, Jennah E, et al. Gene gain facilitated endosymbiotic evolution of Chlamydiae. ''Nat Microbiol''. 2023 Jan; '''8''' (1):40-54
Genome architecture and diverged selection shaping pattern of genomic differentiation in wild barley. Description: Zhang, Wenying, et al. Genome architecture and diverged selection shaping pattern of genomic differentiation in wild barley. ''Plant Biotechnol J''. 2023 Jan; '''21''' (1):46-62
Genomic capacities for Reactive Oxygen Species metabolism across marine phytoplankton. Description: Omar, Naaman M, et al. Genomic capacities for Reactive Oxygen Species metabolism across marine phytoplankton. ''PLoS One''. 2023; '''18''' (4):e0284580
Gut microbiome function and composition in infants from rural Kenya and association with human milk oligosaccharides. Description: Derrien, Muriel, et al. Gut microbiome function and composition in infants from rural Kenya and association with human milk oligosaccharides. ''Gut Microbes''. 2023 Jan-Dec; '''15''' (1):2178793
Identification and characterization of a novel chromosomal aminoglycoside 3'-O-phosphotransferase, APH(3')-Id, from Kluyvera intermedia DW18 isolated from the sewage of an animal farm. Description: Sha, Yuning, et al. Identification and characterization of a novel chromosomal aminoglycoside 3'-O-phosphotransferase, APH(3')-Id, from Kluyvera intermedia DW18 isolated from the sewage of an animal farm. ''Front Microbiol''. 2023; '''14''': 1224464
Identification of a biosynthetic gene cluster for a red pigment cristazarin produced by a lichen-forming fungus Cladonia metacorallifera. Description: Paguirigan, Jaycee Augusto Gumiran, et al. Identification of a biosynthetic gene cluster for a red pigment cristazarin produced by a lichen-forming fungus Cladonia metacorallifera. ''PLoS One''. 2023; '''18''' (6):e0287559
Impact of nanopore-based metagenome sequencing on tick-borne virus detection. Description: Ergunay, Koray, et al. Impact of nanopore-based metagenome sequencing on tick-borne virus detection. ''Front Microbiol''. 2023; '''14''': 1177651
Insights into the genome of Methylobacterium sp. NMS14P, a novel bacterium for growth promotion of maize, chili, and sugarcane. Description: Jirakkakul, Jiraporn, et al. Insights into the genome of Methylobacterium sp. NMS14P, a novel bacterium for growth promotion of maize, chili, and sugarcane. ''PLoS One''. 2023; '''18''' (2):e0281505
Intestinal acetic acid regulates the synthesis of sex pheromones in captive giant pandas. Description: Zhang, Ming-Yue, et al. Intestinal acetic acid regulates the synthesis of sex pheromones in captive giant pandas. ''Front Microbiol''. 2023; '''14''': 1234676
Longitudinal anellome dynamics in the upper respiratory tract of children with acute respiratory tract infections. Description: Cao, Le, et al. Longitudinal anellome dynamics in the upper respiratory tract of children with acute respiratory tract infections. ''Virus Evol''. 2023; '''9''' (2):vead045
Loss of symbiotic and increase of virulent bacteria through microbial networks in Lynch syndrome colon carcinogenesis. Description: Sadeghi, Mohammad, et al. Loss of symbiotic and increase of virulent bacteria through microbial networks in Lynch syndrome colon carcinogenesis. ''Front Oncol''. 2023; '''13''': 1313735
Metagenomics-based exploration of key soil microorganisms contributing to continuously planted Casuarina equisetifolia growth inhibition and their interactions with soil nutrient transformation. Description: Wang, Yuhua, et al. Metagenomics-based exploration of key soil microorganisms contributing to continuously planted Casuarina equisetifolia growth inhibition and their interactions with soil nutrient transformation. ''Front Plant Sci''. 2023; '''14''': 1324184
Phyllosphere-associated microbiota in built environment: Do they have the potential to antagonize human pathogens? Description: Adi Wicaksono, Wisnu, et al. Phyllosphere-associated microbiota in built environment: Do they have the potential to antagonize human pathogens? ''J Adv Res''. 2023 Jan; '''43''': 109-121
Preliminary exploratory research on the application value of oral and intestinal meta-genomics in predicting subjects' occupations-A case study of the distinction between students and migrant workers. Description: Dou, Shujie, et al. Preliminary exploratory research on the application value of oral and intestinal meta-genomics in predicting subjects' occupations-A case study of the distinction between students and migrant workers. ''Front Microbiol''. 2023; '''14''': 1330603
Proteinortho6: pseudo-reciprocal best alignment heuristic for graph-based detection of (co-)orthologs. Description: Klemm, Paul, et al. Proteinortho6: pseudo-reciprocal best alignment heuristic for graph-based detection of (co-)orthologs. ''Front Bioinform''. 2023; '''3''': 1322477
Retinal transcriptome of neonatal mice after optic nerve injury. Description: Yao, Shi-Qi, et al. Retinal transcriptome of neonatal mice after optic nerve injury. ''PLoS One''. 2023; '''18''' (5):e0286344
Safety, feasibility, tolerability, and clinical effects of repeated psilocybin dosing combined with non-directive support in the treatment of obsessive-compulsive disorder: protocol for a randomized, waitlist-controlled trial with blinded ratings. Description: Ching, Terence H W, et al. Safety, feasibility, tolerability, and clinical effects of repeated psilocybin dosing combined with non-directive support in the treatment of obsessive-compulsive disorder: protocol for a randomized, waitlist-controlled trial with blinded ratings. ''Front Psychiatry''. 2023; '''14''': 1278823
Shotgun Metagenomics of Gastric Biopsies Reveals Compositional and Functional Microbiome Shifts in High- and Low-Gastric-Cancer-Risk Populations from Colombia, South America. Description: Mannion, Anthony, et al. Shotgun Metagenomics of Gastric Biopsies Reveals Compositional and Functional Microbiome Shifts in High- and Low-Gastric-Cancer-Risk Populations from Colombia, South America. ''Gut Microbes''. 2023 Jan-Dec; '''15''' (1):2186677
Supplementation of dietary areca nut extract modulates the growth performance, cecal microbiota composition, and immune function in Wenchang chickens. Description: Wang, Shiping, et al. Supplementation of dietary areca nut extract modulates the growth performance, cecal microbiota composition, and immune function in Wenchang chickens. ''Front Vet Sci''. 2023; '''10''': 1278312
The first released available genome of the common ice plant ( Mesembryanthemum crystallinum L.) extended the research region on salt tolerance, C (3)-CAM photosynthetic conversion, and halophilism. Description: Sato, Ryoma, et al. The first released available genome of the common ice plant ( Mesembryanthemum crystallinum L.) extended the research region on salt tolerance, C (3)-CAM photosynthetic conversion, and halophilism. ''F1000Res''. 2023; '''12''': 448
The nematicide emamectin benzoate increases ROS accumulation in Pinus massoniana and poison Monochamus alternatus. Description: Liu, Fengzhu, et al. The nematicide emamectin benzoate increases ROS accumulation in Pinus massoniana and poison Monochamus alternatus. ''PLoS One''. 2023; '''18''' (12):e0295945
The selection of software and database for metagenomics sequence analysis impacts the outcome of microbial profiling and pathogen detection. Description: Xu, Ruijie, et al. The selection of software and database for metagenomics sequence analysis impacts the outcome of microbial profiling and pathogen detection. ''PLoS One''. 2023; '''18''' (4):e0284031
Transcriptome and metabolome analysis reveals the effect of flavonoids on flower color variation in Dendrobium nobile Lindl. Description: Qiu, Yujie, et al. Transcriptome and metabolome analysis reveals the effect of flavonoids on flower color variation in Dendrobium nobile Lindl. ''Front Plant Sci''. 2023; '''14''': 1220507
Whole genome sequence and diversity in multigene families of Babesia ovis. Description: Yamagishi, Junya, et al. Whole genome sequence and diversity in multigene families of Babesia ovis. ''Front Cell Infect Microbiol''. 2023; '''13''': 1194608
Genome-wide signatures of adaptation to extreme environments in red algae. Description: Cho, Chung Hyun, et al. Genome-wide signatures of adaptation to extreme environments in red algae. ''Nat Commun''. 2023 Jan 4; '''14''' (1):10
Integrating Phylogenetics With Intron Positions Illuminates the Origin of the Complex Spliceosome. Description: Vosseberg, Julian, et al. Integrating Phylogenetics With Intron Positions Illuminates the Origin of the Complex Spliceosome. ''Mol Biol Evol''. 2023 Jan 4; '''40''' (1):
Mycoparasites, Gut Dwellers, and Saprotrophs: Phylogenomic Reconstructions and Comparative Analyses of Kickxellomycotina Fungi. Description: Reynolds, Nicole K, et al. Mycoparasites, Gut Dwellers, and Saprotrophs: Phylogenomic Reconstructions and Comparative Analyses of Kickxellomycotina Fungi. ''Genome Biol Evol''. 2023 Jan 4; '''15''' (1):
Sr(II) and Ba(II) Alkaline Earth Metal-Organic Frameworks (AE-MOFs) for Selective Gas Adsorption, Energy Storage, and Environmental Application. Description: Kiraly, Nikolas, et al. Sr(II) and Ba(II) Alkaline Earth Metal-Organic Frameworks (AE-MOFs) for Selective Gas Adsorption, Energy Storage, and Environmental Application. ''Nanomaterials (Basel)''. 2023 Jan 4; '''13''' (2):
Chromosome-level genome assembly of a high-altitude-adapted frog (Rana kukunoris) from the Tibetan plateau provides insight into amphibian genome evolution and adaptation. Description: Chen, Wei, et al. Chromosome-level genome assembly of a high-altitude-adapted frog (Rana kukunoris) from the Tibetan plateau provides insight into amphibian genome evolution and adaptation. ''Front Zool''. 2023 Jan 6; '''20''' (1):1
Thirteen new species of butterflies (Lepidoptera: Hesperiidae) from Texas. Description: Zhang, Jing, et al. Thirteen new species of butterflies (Lepidoptera: Hesperiidae) from Texas. ''Insecta mundi''. 2023 Jan 6; '''2023''':
Differences in pseudogene evolution contributed to the contrasting flavors of turnip and Chiifu, two Brassica rapa subspecies. Description: Yin, Xin, et al. Differences in pseudogene evolution contributed to the contrasting flavors of turnip and Chiifu, two Brassica rapa subspecies. ''Plant Commun''. 2023 Jan 9; '''4''' (1):100427
Taxonomic Assignment-Based Genome Reconstruction from Apical Periodontal Metagenomes to Identify Antibiotic Resistance and Virulence Factors. Description: Kumari, K Swapna, et al. Taxonomic Assignment-Based Genome Reconstruction from Apical Periodontal Metagenomes to Identify Antibiotic Resistance and Virulence Factors. ''Life (Basel)''. 2023 Jan 9; '''13''' (1):
The nearly complete assembly of the Cercis chinensis genome and Fabaceae phylogenomic studies provide insights into new gene evolution. Description: Li, Jinglong, et al. The nearly complete assembly of the Cercis chinensis genome and Fabaceae phylogenomic studies provide insights into new gene evolution. ''Plant Commun''. 2023 Jan 9; '''4''' (1):100422
De novo sequencing, diploid assembly, and annotation of the black carpenter ant, Camponotus pennsylvanicus, and its symbionts by one person for $1000, using nanopore sequencing. Description: Faulk, Christopher. De novo sequencing, diploid assembly, and annotation of the black carpenter ant, Camponotus pennsylvanicus, and its symbionts by one person for $1000, using nanopore sequencing. ''Nucleic Acids Res''. 2023 Jan 11; '''51''' (1):17-28
Structural Diversity, XAS and Magnetism of Copper(II)-Nickel(II) Heterometallic Complexes Based on the [Ni(NCS)(6)](4-) Unit. Description: Tereba, Natalia, et al. Structural Diversity, XAS and Magnetism of Copper(II)-Nickel(II) Heterometallic Complexes Based on the [Ni(NCS)(6)](4-) Unit. ''Materials (Basel)''. 2023 Jan 11; '''16''' (2):
The ESKAPE mobilome contributes to the spread of antimicrobial resistance and CRISPR-mediated conflict between mobile genetic elements. Description: Botelho, Joao, et al. The ESKAPE mobilome contributes to the spread of antimicrobial resistance and CRISPR-mediated conflict between mobile genetic elements. ''Nucleic Acids Res''. 2023 Jan 11; '''51''' (1):236-252
Expanded catalogue of metagenome-assembled genomes reveals resistome characteristics and athletic performance-associated microbes in horse. Description: Li, Cunyuan, et al. Expanded catalogue of metagenome-assembled genomes reveals resistome characteristics and athletic performance-associated microbes in horse. ''Microbiome''. 2023 Jan 12; '''11''' (1):7
Culturomics- and metagenomics-based insights into the microbial community and function of rhizosphere soils in Sinai desert farming systems. Description: Lian, Wen-Hui, et al. Culturomics- and metagenomics-based insights into the microbial community and function of rhizosphere soils in Sinai desert farming systems. ''Environ Microbiome''. 2023 Jan 13; '''18''' (1):4
Unraveling the Secrets of a Double-Life Fungus by Genomics: Ophiocordyceps australis CCMB661 Displays Molecular Machinery for Both Parasitic and Endophytic Lifestyles. Description: de Menezes, Thais Almeida, et al. Unraveling the Secrets of a Double-Life Fungus by Genomics: Ophiocordyceps australis CCMB661 Displays Molecular Machinery for Both Parasitic and Endophytic Lifestyles. ''J Fungi (Basel)''. 2023 Jan 13; '''9''' (1):
Characterization of a Novel Infectious Pancreatic Necrosis Virus (IPNV) from Genogroup 6 Identified in Sea Trout (Salmo trutta) from Lake Vanern, Sweden. Description: Persson, B David, et al. Characterization of a Novel Infectious Pancreatic Necrosis Virus (IPNV) from Genogroup 6 Identified in Sea Trout (Salmo trutta) from Lake Vanern, Sweden. ''Vet Sci''. 2023 Jan 14; '''10''' (1):
Prioritization of New Candidate Genes for Rare Genetic Diseases by a Disease-Aware Evaluation of Heterogeneous Molecular Networks. Description: de la Fuente, Lorena, et al. Prioritization of New Candidate Genes for Rare Genetic Diseases by a Disease-Aware Evaluation of Heterogeneous Molecular Networks. ''Int J Mol Sci''. 2023 Jan 14; '''24''' (2):
A Novel Indole Derivative with Superior Photophysical Performance for Fluorescent Probe, pH-Sensing, and Logic Gates. Description: Liu, Hai-Ling, et al. A Novel Indole Derivative with Superior Photophysical Performance for Fluorescent Probe, pH-Sensing, and Logic Gates. ''Int J Mol Sci''. 2023 Jan 15; '''24''' (2):
A first look at sea-lavenders genomics - can genome wide SNP information tip the scales of controversy in the Limonium vulgare species complex? Description: Pina-Martins, Francisco, et al. A first look at sea-lavenders genomics - can genome wide SNP information tip the scales of controversy in the Limonium vulgare species complex? ''BMC Plant Biol''. 2023 Jan 16; '''23''' (1):34
Characterization of Non-Obstructive Azoospermia in Men Using Gut Microbial Profiling. Description: Cao, Yalei, et al. Characterization of Non-Obstructive Azoospermia in Men Using Gut Microbial Profiling. ''J Clin Med''. 2023 Jan 16; '''12''' (2):
Crystal Structure and Chemical Bonds in [Cu(II)(2)(Tolf)(4)(MeOH)(2)]∙2MeOH. Description: Majerz, Irena, et al. Crystal Structure and Chemical Bonds in [Cu(II)(2)(Tolf)(4)(MeOH)(2)]∙2MeOH. ''Int J Mol Sci''. 2023 Jan 16; '''24''' (2):
Micro and macroevolution of sea anemone venom phenotype. Description: Smith, Edward G, et al. Micro and macroevolution of sea anemone venom phenotype. ''Nat Commun''. 2023 Jan 16; '''14''' (1):249
Heteroleptic Copper(II) Complexes Containing 2'-Hydroxy-4-(Dimethylamino)Chalcone Show Strong Antiproliferative Activity. Description: Travnicek, Zdenek, et al. Heteroleptic Copper(II) Complexes Containing 2'-Hydroxy-4-(Dimethylamino)Chalcone Show Strong Antiproliferative Activity. ''Pharmaceutics''. 2023 Jan 17; '''15''' (2):
Interactions among deep-sea mussels and their epibiotic and endosymbiotic chemoautotrophic bacteria: Insights from multi-omics analysis. Description: Lin, Yi-Tao, et al. Interactions among deep-sea mussels and their epibiotic and endosymbiotic chemoautotrophic bacteria: Insights from multi-omics analysis. ''Zool Res''. 2023 Jan 18; '''44''' (1):106-125
PhaTYP: predicting the lifestyle for bacteriophages using BERT. Description: Shang, Jiayu, et al. PhaTYP: predicting the lifestyle for bacteriophages using BERT. ''Brief Bioinform''. 2023 Jan 19; '''24''' (1):
The gastrointestinal microbiome in dairy cattle is constrained by the deterministic driver of the region and the modified effect of diet. Description: Lin, Limei, et al. The gastrointestinal microbiome in dairy cattle is constrained by the deterministic driver of the region and the modified effect of diet. ''Microbiome''. 2023 Jan 20; '''11''' (1):10
Antioxidant and Anticancer Potential of the New Cu(II) Complexes Bearing Imine-Phenolate Ligands with Pendant Amine N-Donor Groups. Description: Pinheiro, Adriana Castro, et al. Antioxidant and Anticancer Potential of the New Cu(II) Complexes Bearing Imine-Phenolate Ligands with Pendant Amine N-Donor Groups. ''Pharmaceutics''. 2023 Jan 22; '''15''' (2):
The Influence of Symbiosis on the Proteome of the Exaiptasia Endosymbiont Breviolum minutum. Description: Mashini, Amirhossein Gheitanchi, et al. The Influence of Symbiosis on the Proteome of the Exaiptasia Endosymbiont Breviolum minutum. ''Microorganisms''. 2023 Jan 22; '''11''' (2):
Analysis of oxidase activity and transcriptomic changes related to cutting propagation of hybrid larch. Description: Qin, Ruofan, et al. Analysis of oxidase activity and transcriptomic changes related to cutting propagation of hybrid larch. ''Sci Rep''. 2023 Jan 24; '''13''' (1):1354
Metagenomics and metatranscriptomics reveal broadly distributed, active, novel methanotrophs in the Gulf of Mexico hypoxic zone and in the marine water column. Description: Howe, Kathryn L, et al. Metagenomics and metatranscriptomics reveal broadly distributed, active, novel methanotrophs in the Gulf of Mexico hypoxic zone and in the marine water column. ''FEMS Microbiol Ecol''. 2023 Jan 24; '''99''' (2):
Variable impact of geochemical gradients on the functional potential of bacteria, archaea, and phages from the permanently stratified Lac Pavin. Description: Jaffe, Alexander L, et al. Variable impact of geochemical gradients on the functional potential of bacteria, archaea, and phages from the permanently stratified Lac Pavin. ''Microbiome''. 2023 Jan 25; '''11''' (1):14
Studies on the Complexation of Platinum(II) by Some 4-Nitroisoxazoles and Testing the Cytotoxic Activity of the Resulting Complexes. Description: Mastalarz, Henryk, et al. Studies on the Complexation of Platinum(II) by Some 4-Nitroisoxazoles and Testing the Cytotoxic Activity of the Resulting Complexes. ''Molecules''. 2023 Jan 28; '''28''' (3):
Addressing the pervasive scarcity of structural annotation in eukaryotic algae. Description: Kwon, Taehyung, et al. Addressing the pervasive scarcity of structural annotation in eukaryotic algae. ''Sci Rep''. 2023 Jan 30; '''13''' (1):1687
PorinPredict: In Silico Identification of OprD Loss from WGS Data for Improved Genotype-Phenotype Predictions of P. aeruginosa Carbapenem Resistance. Description: Biggel, Michael, et al. PorinPredict: In Silico Identification of OprD Loss from WGS Data for Improved Genotype-Phenotype Predictions of P. aeruginosa Carbapenem Resistance. ''Microbiol Spectr''. 2023 Jan 30; '''11''' (2):e0358822
The genome of sheep ked (Melophagus ovinus) reveals potential mechanisms underlying reproduction and narrower ecological niches. Description: Zhang, Qingxun, et al. The genome of sheep ked (Melophagus ovinus) reveals potential mechanisms underlying reproduction and narrower ecological niches. ''BMC Genomics''. 2023 Jan 30; '''24''' (1):54
Changes in the Gut Microbiome Associated with Intussusception in Patients with Peutz-Jeghers Syndrome. Description: Wang, Zhiqing, et al. Changes in the Gut Microbiome Associated with Intussusception in Patients with Peutz-Jeghers Syndrome. ''Microbiol Spectr''. 2023 Jan 31; '''11''' (2):e0281922
Rumen and Fecal Microbiota Characteristics of Qinchuan Cattle with Divergent Residual Feed Intake. Description: Zhou, Xiaonan, et al. Rumen and Fecal Microbiota Characteristics of Qinchuan Cattle with Divergent Residual Feed Intake. ''Microorganisms''. 2023 Jan 31; '''11''' (2):
Cd(2+) and Zn(2+) Complexes with 2,4,6-Tri(2-pyridyl)-s-Triazine and Terephthalate for Rapid, High-Capacity Adsorption of Congo Red. Description: Zhao, Yanfang, et al. Cd(2+) and Zn(2+) Complexes with 2,4,6-Tri(2-pyridyl)-s-Triazine and Terephthalate for Rapid, High-Capacity Adsorption of Congo Red. ''ChemistryOpen''. 2023 Feb; '''12''' (2):e202200176
Evolution of pathogenicity-associated genes in Rhizoctonia solani AG1-IA by genome duplication and transposon-mediated gene function alterations. Description: Francis, Aleena, et al. Evolution of pathogenicity-associated genes in Rhizoctonia solani AG1-IA by genome duplication and transposon-mediated gene function alterations. ''BMC Biol''. 2023 Feb 1; '''21''' (1):15
Genome assembly and transcriptomic analyses of the repeatedly rejuvenating jellyfish Turritopsis dohrnii. Description: Hasegawa, Yoshinori, et al. Genome assembly and transcriptomic analyses of the repeatedly rejuvenating jellyfish Turritopsis dohrnii. ''DNA Res''. 2023 Feb 1; '''30''' (1):
Genome-wide identification and expression analysis of the mating-responsive genes in the male accessory glands of Spodoptera litura (Lepidoptera: Noctuidae). Description: Mamtha, R, et al. Genome-wide identification and expression analysis of the mating-responsive genes in the male accessory glands of Spodoptera litura (Lepidoptera: Noctuidae). ''J Genet Eng Biotechnol''. 2023 Feb 1; '''21''' (1):11
Impact of host age on viral and bacterial communities in a waterbird population. Description: Hill, Sarah C, et al. Impact of host age on viral and bacterial communities in a waterbird population. ''ISME J''. 2023 Feb; '''17''' (2):215-226
Newly identified sex chromosomes in the Sphagnum (peat moss) genome alter carbon sequestration and ecosystem dynamics. Description: Healey, Adam L, et al. Newly identified sex chromosomes in the Sphagnum (peat moss) genome alter carbon sequestration and ecosystem dynamics. ''Nat Plants''. 2023 Feb; '''9''' (2):238-254
Tin Bromido Aluminate Networks with Bright Luminescence. Description: Wolf, Silke, et al. Tin Bromido Aluminate Networks with Bright Luminescence. ''ChemistryOpen''. 2023 Feb; '''12''' (2):e202200226
Tritrichomonas foetus Cell Division Involves DNA Endoreplication and Multiple Fissions. Description: Iriarte, Lucrecia S, et al. Tritrichomonas foetus Cell Division Involves DNA Endoreplication and Multiple Fissions. ''Microbiol Spectr''. 2023 Feb 2; '''11''' (2):e0325122
Chromosome-Level Genome Assembly of Herpetospermum pedunculosum (Cucurbitaceae). Description: Yang, Yixi, et al. Chromosome-Level Genome Assembly of Herpetospermum pedunculosum (Cucurbitaceae). ''Genome Biol Evol''. 2023 Feb 3; '''15''' (2):
Differentially expression analyses in fruit of cultivated and wild species of grape and peach. Description: Huang, Weijian, et al. Differentially expression analyses in fruit of cultivated and wild species of grape and peach. ''Sci Rep''. 2023 Feb 3; '''13''' (1):1997
MetaLab-MAG: A Metaproteomic Data Analysis Platform for Genome-Level Characterization of Microbiomes from the Metagenome-Assembled Genomes Database. Description: Cheng, Kai, et al. MetaLab-MAG: A Metaproteomic Data Analysis Platform for Genome-Level Characterization of Microbiomes from the Metagenome-Assembled Genomes Database. ''J Proteome Res''. 2023 Feb 3; '''22''' (2):387-398
Comparative Genomic Analyses of Cellulolytic Machinery Reveal Two Nutritional Strategies of Marine Labyrinthulomycetes Protists. Description: Liu, Xiuping, et al. Comparative Genomic Analyses of Cellulolytic Machinery Reveal Two Nutritional Strategies of Marine Labyrinthulomycetes Protists. ''Microbiol Spectr''. 2023 Feb 6; '''11''' (2):e0424722
Heterometallic 3d-4f Alkoxide Precursors for the Synthesis of Binary Oxide Nanomaterials. Description: Petrus, Rafal, et al. Heterometallic 3d-4f Alkoxide Precursors for the Synthesis of Binary Oxide Nanomaterials. ''Inorg Chem''. 2023 Feb 6; '''62''' (5):2197-2212
Screening of Candidate Effectors from Magnaporthe oryzae by In Vitro Secretomic Analysis. Description: Li, Guanjun, et al. Screening of Candidate Effectors from Magnaporthe oryzae by In Vitro Secretomic Analysis. ''Int J Mol Sci''. 2023 Feb 6; '''24''' (4):
A nontuberculous mycobacterium could solve the mystery of the lady from the Franciscan church in Basel, Switzerland. Description: Sarhan, Mohamed S, et al. A nontuberculous mycobacterium could solve the mystery of the lady from the Franciscan church in Basel, Switzerland. ''BMC Biol''. 2023 Feb 7; '''21''' (1):9
Metagenomic Analysis of Anaerobic Microbial Communities Degrading Short-Chain Fatty Acids as Sole Carbon Sources. Description: Becker, Daniela, et al. Metagenomic Analysis of Anaerobic Microbial Communities Degrading Short-Chain Fatty Acids as Sole Carbon Sources. ''Microorganisms''. 2023 Feb 7; '''11''' (2):
Longitudinal comparison of the developing gut virome in infants and their mothers. Description: Walters, William A, et al. Longitudinal comparison of the developing gut virome in infants and their mothers. ''Cell Host Microbe''. 2023 Feb 8; '''31''' (2):187-198.e3
Chromosome-scale genome assembly of Eustoma grandiflorum, the first complete genome sequence in the genus Eustoma. Description: Shirasawa, Kenta, et al. Chromosome-scale genome assembly of Eustoma grandiflorum, the first complete genome sequence in the genus Eustoma. ''G3 (Bethesda)''. 2023 Feb 9; '''13''' (2):
Seasonal Changes in the Structure and Function of Gut Microbiota in the Muskrat (Ondatra zibethicus). Description: Song, Fengcheng, et al. Seasonal Changes in the Structure and Function of Gut Microbiota in the Muskrat (Ondatra zibethicus). ''Metabolites''. 2023 Feb 9; '''13''' (2):
Bile salt hydrolase in non-enterotoxigenic Bacteroides potentiates colorectal cancer. Description: Sun, Lulu, et al. Bile salt hydrolase in non-enterotoxigenic Bacteroides potentiates colorectal cancer. ''Nat Commun''. 2023 Feb 10; '''14''' (1):755
Development of unigene-derived SSR markers from RNA-seq data of Uraria lagopodioides (Fabaceae) and their application in the genus Uraria Desv. (Fabaceae). Description: Liu, Chaoyu, et al. Development of unigene-derived SSR markers from RNA-seq data of Uraria lagopodioides (Fabaceae) and their application in the genus Uraria Desv. (Fabaceae). ''BMC Plant Biol''. 2023 Feb 10; '''23''' (1):87
XY sex determination in a cnidarian. Description: Chen, Ruoxu, et al. XY sex determination in a cnidarian. ''BMC Biol''. 2023 Feb 13; '''21''' (1):32
Characterization of Gut Microbiota Compositions along the Intestinal Tract in CD163/pAPN Double Knockout Piglets and Their Potential Roles in Iron Absorption. Description: Zhang, Xiu-Ling, et al. Characterization of Gut Microbiota Compositions along the Intestinal Tract in CD163/pAPN Double Knockout Piglets and Their Potential Roles in Iron Absorption. ''Microbiol Spectr''. 2023 Feb 14; '''11''' (1):e0190622
Characterizations of the Gut Bacteriome, Mycobiome, and Virome in Patients with Osteoarthritis. Description: Chen, Changming, et al. Characterizations of the Gut Bacteriome, Mycobiome, and Virome in Patients with Osteoarthritis. ''Microbiol Spectr''. 2023 Feb 14; '''11''' (1):e0171122
Differential Expression Genes of the Head Kidney and Spleen in Streptococcus iniae-Infected East Asian Fourfinger Threadfin Fish (Eleutheronema tetradactylum). Description: Maekawa, Shun, et al. Differential Expression Genes of the Head Kidney and Spleen in Streptococcus iniae-Infected East Asian Fourfinger Threadfin Fish (Eleutheronema tetradactylum). ''Int J Mol Sci''. 2023 Feb 14; '''24''' (4):
Dysbiosis of Oral Microbiota and Metabolite Profiles Associated with Type 2 Diabetes Mellitus. Description: Li, Yujiao, et al. Dysbiosis of Oral Microbiota and Metabolite Profiles Associated with Type 2 Diabetes Mellitus. ''Microbiol Spectr''. 2023 Feb 14; '''11''' (1):e0379622
Glacier-Fed Stream Biofilms Harbor Diverse Resistomes and Biosynthetic Gene Clusters. Description: Busi, Susheel Bhanu, et al. Glacier-Fed Stream Biofilms Harbor Diverse Resistomes and Biosynthetic Gene Clusters. ''Microbiol Spectr''. 2023 Feb 14; '''11''' (1):e0406922
Nitrate Nitrogen and pH Correlate with Changes in Rhizosphere Microbial Community Assemblages during Invasion of Ambrosia artemisiifolia and Bidens pilosa. Description: Wang, Liting, et al. Nitrate Nitrogen and pH Correlate with Changes in Rhizosphere Microbial Community Assemblages during Invasion of Ambrosia artemisiifolia and Bidens pilosa. ''Microbiol Spectr''. 2023 Feb 14; '''11''' (1):e0364922
Riddles of Lost City: Chemotrophic Prokaryotes Drives Carbon, Sulfur, and Nitrogen Cycling at an Extinct Cold Seep, South China Sea. Description: Chen, Yu, et al. Riddles of Lost City: Chemotrophic Prokaryotes Drives Carbon, Sulfur, and Nitrogen Cycling at an Extinct Cold Seep, South China Sea. ''Microbiol Spectr''. 2023 Feb 14; '''11''' (1):e0333822
The human gut microbiome of athletes: metagenomic and metabolic insights. Description: Fontana, Federico, et al. The human gut microbiome of athletes: metagenomic and metabolic insights. ''Microbiome''. 2023 Feb 14; '''11''' (1):27
A New Concept of Enhancing the Anticancer Activity of Manganese Terpyridine Complex by Oxygen-Containing Substituent Modification. Description: Li, Jiahe, et al. A New Concept of Enhancing the Anticancer Activity of Manganese Terpyridine Complex by Oxygen-Containing Substituent Modification. ''Int J Mol Sci''. 2023 Feb 15; '''24''' (4):
Anti-Hyperuricemic Effect of Anserine Based on the Gut-Kidney Axis: Integrated Analysis of Metagenomics and Metabolomics. Description: Halimulati, Mairepaiti, et al. Anti-Hyperuricemic Effect of Anserine Based on the Gut-Kidney Axis: Integrated Analysis of Metagenomics and Metabolomics. ''Nutrients''. 2023 Feb 15; '''15''' (4):
Ion-Selective Assembly of Supertetrahedral Selenido Germanate Clusters for Alkali Metal Ion Capture and Separation. Description: Wu, Zhou, et al. Ion-Selective Assembly of Supertetrahedral Selenido Germanate Clusters for Alkali Metal Ion Capture and Separation. ''J Am Chem Soc''. 2023 Feb 15; '''145''' (6):3802-3811
Orthologs of Human-Disease-Associated Genes in Plants Are Involved in Regulating Leaf Senescence. Description: Wang, Hou-Ling, et al. Orthologs of Human-Disease-Associated Genes in Plants Are Involved in Regulating Leaf Senescence. ''Life (Basel)''. 2023 Feb 16; '''13''' (2):
A Promising 1,3,5-Triazine-Based Anion Exchanger for Perrhenate Binding: Crystal Structures of Its Chloride, Nitrate and Perrhenate Salts. Description: Zakharov, Valery N, et al. A Promising 1,3,5-Triazine-Based Anion Exchanger for Perrhenate Binding: Crystal Structures of Its Chloride, Nitrate and Perrhenate Salts. ''Molecules''. 2023 Feb 17; '''28''' (4):
Whole-Genome Comparison Reveals Structural Variations behind Heading Leaf Trait in Brassica oleracea. Description: Ji, Gaoxiang, et al. Whole-Genome Comparison Reveals Structural Variations behind Heading Leaf Trait in Brassica oleracea. ''Int J Mol Sci''. 2023 Feb 17; '''24''' (4):
Computational Insight into Intraspecies Distinctions in Pseudoalteromonas distincta: Carotenoid-like Synthesis Traits and Genomic Heterogeneity. Description: Balabanova, Larissa, et al. Computational Insight into Intraspecies Distinctions in Pseudoalteromonas distincta: Carotenoid-like Synthesis Traits and Genomic Heterogeneity. ''Int J Mol Sci''. 2023 Feb 19; '''24''' (4):
Metagenomes from Coastal Sediments of Kuwait: Insights into the Microbiome, Metabolic Functions and Resistome. Description: Habibi, Nazima, et al. Metagenomes from Coastal Sediments of Kuwait: Insights into the Microbiome, Metabolic Functions and Resistome. ''Microorganisms''. 2023 Feb 20; '''11''' (2):
Diversity and Prevalence of Clostridium innocuum in the Human Gut Microbiota. Description: Bhattacharjee, Disha, et al. Diversity and Prevalence of Clostridium innocuum in the Human Gut Microbiota. ''mSphere''. 2023 Feb 21; '''8''' (1):e0056922
Enrichment of oral-derived bacteria in inflamed colorectal tumors and distinct associations of Fusobacterium in the mesenchymal subtype. Description: Younginger, Brett S, et al. Enrichment of oral-derived bacteria in inflamed colorectal tumors and distinct associations of Fusobacterium in the mesenchymal subtype. ''Cell Rep Med''. 2023 Feb 21; '''4''' (2):100920
Exploring the Astrovirome of Shellfish Matrices Using Nanopore Sequencing. Description: Beikpour, Farzad, et al. Exploring the Astrovirome of Shellfish Matrices Using Nanopore Sequencing. ''Vet Sci''. 2023 Feb 21; '''10''' (3):
A novel and diverse group of Candidatus Patescibacteria from bathypelagic Lake Baikal revealed through long-read metagenomics. Description: Haro-Moreno, Jose M, et al. A novel and diverse group of Candidatus Patescibacteria from bathypelagic Lake Baikal revealed through long-read metagenomics. ''Environ Microbiome''. 2023 Feb 23; '''18''' (1):12
Disrupting the ArcA Regulatory Network Amplifies the Fitness Cost of Tetracycline Resistance in Escherichia coli. Description: Arrieta-Ortiz, Mario L, et al. Disrupting the ArcA Regulatory Network Amplifies the Fitness Cost of Tetracycline Resistance in Escherichia coli. ''mSystems''. 2023 Feb 23; '''8''' (1):e0090422
Diverse Methylmercury (MeHg) Producers and Degraders Inhabit Acid Mine Drainage Sediments, but Few Taxa Correlate with MeHg Accumulation. Description: Zheng, Jin, et al. Diverse Methylmercury (MeHg) Producers and Degraders Inhabit Acid Mine Drainage Sediments, but Few Taxa Correlate with MeHg Accumulation. ''mSystems''. 2023 Feb 23; '''8''' (1):e0073622
Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. Description: Fontana, Federico, et al. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. ''mSystems''. 2023 Feb 23; '''8''' (1):e0106822
Enzyme adaptation to habitat thermal legacy shapes the thermal plasticity of marine microbiomes. Description: Marasco, Ramona, et al. Enzyme adaptation to habitat thermal legacy shapes the thermal plasticity of marine microbiomes. ''Nat Commun''. 2023 Feb 24; '''14''' (1):1045
Microbial Virulence Factors, Antimicrobial Resistance Genes, Metabolites, and Synthetic Chemicals in Cabins of Commercial Aircraft. Description: Fu, Xi, et al. Microbial Virulence Factors, Antimicrobial Resistance Genes, Metabolites, and Synthetic Chemicals in Cabins of Commercial Aircraft. ''Metabolites''. 2023 Feb 24; '''13''' (3):
Evolutionary ecology of microbial populations inhabiting deep sea sediments associated with cold seeps. Description: Dong, Xiyang, et al. Evolutionary ecology of microbial populations inhabiting deep sea sediments associated with cold seeps. ''Nat Commun''. 2023 Feb 28; '''14''' (1):1127
Plasmid-Encoded Traits Vary across Environments. Description: Finks, Sarai S, et al. Plasmid-Encoded Traits Vary across Environments. ''mBio''. 2023 Feb 28; '''14''' (1):e0319122
Polygenic adaptation from standing genetic variation allows rapid ecotype formation. Description: Fuhrmann, Nico, et al. Polygenic adaptation from standing genetic variation allows rapid ecotype formation. ''Elife''. 2023 Feb 28; '''12''':
Taxonomic and Metagenomic Analyses Define the Development of the Microbiota in the Chick. Description: Bogomolnaya, Lydia, et al. Taxonomic and Metagenomic Analyses Define the Development of the Microbiota in the Chick. ''mBio''. 2023 Feb 28; '''14''' (1):e0244422
The Early Microbial Colonizers of a Short-Lived Volcanic Island in the Kingdom of Tonga. Description: Dragone, Nicholas B, et al. The Early Microbial Colonizers of a Short-Lived Volcanic Island in the Kingdom of Tonga. ''mBio''. 2023 Feb 28; '''14''' (1):e0331322
A genome sequence for Biomphalaria pfeifferi, the major vector snail for the human-infecting parasite Schistosoma mansoni. Description: Bu, Lijing, et al. A genome sequence for Biomphalaria pfeifferi, the major vector snail for the human-infecting parasite Schistosoma mansoni. ''PLoS Negl Trop Dis''. 2023 Mar; '''17''' (3):e0011208
Allelic diversity uncovers protein domains contributing to the emergence of antimicrobial resistance. Description: Grant, Trudy-Ann, et al. Allelic diversity uncovers protein domains contributing to the emergence of antimicrobial resistance. ''PLoS Genet''. 2023 Mar; '''19''' (3):e1010490
Annelid functional genomics reveal the origins of bilaterian life cycles. Description: Martin-Zamora, Francisco M, et al. Annelid functional genomics reveal the origins of bilaterian life cycles. ''Nature''. 2023 Mar; '''615''' (7950):105-110
Genetic engineering of complex feed enzymes into barley seed for direct utilization in animal feedstuff. Description: Peng, Ri-He, et al. Genetic engineering of complex feed enzymes into barley seed for direct utilization in animal feedstuff. ''Plant Biotechnol J''. 2023 Mar; '''21''' (3):560-573
Genetic mapping of microbial and host traits reveals production of immunomodulatory lipids by Akkermansia muciniphila in the murine gut. Description: Zhang, Qijun, et al. Genetic mapping of microbial and host traits reveals production of immunomodulatory lipids by Akkermansia muciniphila in the murine gut. ''Nat Microbiol''. 2023 Mar; '''8''' (3):424-440
Genome Sequence and Analysis of Nicotiana benthamiana, the Model Plant for Interactions between Organisms. Description: Kurotani, Ken-Ichi, et al. Genome Sequence and Analysis of Nicotiana benthamiana, the Model Plant for Interactions between Organisms. ''Plant Cell Physiol''. 2023 Mar 1; '''64''' (2):248-257
Genome-wide subcellular protein map for the flagellate parasite Trypanosoma brucei. Description: Billington, Karen, et al. Genome-wide subcellular protein map for the flagellate parasite Trypanosoma brucei. ''Nat Microbiol''. 2023 Mar; '''8''' (3):533-547
Highly contiguous genomes of human clinical isolates of Giardia duodenalis reveal assemblage- and sub-assemblage-specific presence-absence variation in protein-coding genes. Description: Klotz, Christian, et al. Highly contiguous genomes of human clinical isolates of Giardia duodenalis reveal assemblage- and sub-assemblage-specific presence-absence variation in protein-coding genes. ''Microb Genom''. 2023 Mar; '''9''' (3):
Insights into the genomic evolution and the alkali tolerance mechanisms of Agaricus sinodeliciosus by comparative genomic and transcriptomic analyses. Description: Ling, Zhi-Lin, et al. Insights into the genomic evolution and the alkali tolerance mechanisms of Agaricus sinodeliciosus by comparative genomic and transcriptomic analyses. ''Microb Genom''. 2023 Mar; '''9''' (3):
Network expansion of genetic associations defines a pleiotropy map of human cell biology. Description: Barrio-Hernandez, Inigo, et al. Network expansion of genetic associations defines a pleiotropy map of human cell biology. ''Nat Genet''. 2023 Mar; '''55''' (3):389-398
Population-level impacts of antibiotic usage on the human gut microbiome. Description: Lee, Kihyun, et al. Population-level impacts of antibiotic usage on the human gut microbiome. ''Nat Commun''. 2023 Mar 2; '''14''' (1):1191
Chromosome-level Genome Assembly of Euphorbia peplus, a Model System for Plant Latex, Reveals that Relative Lack of Ty3 Transposons Contributed to Its Small Genome Size. Description: Johnson, Arielle R, et al. Chromosome-level Genome Assembly of Euphorbia peplus, a Model System for Plant Latex, Reveals that Relative Lack of Ty3 Transposons Contributed to Its Small Genome Size. ''Genome Biol Evol''. 2023 Mar 3; '''15''' (3):
Genomic Characterization and Wetland Occurrence of a Novel Campylobacter Isolate from Canada Geese. Description: Linz, David M, et al. Genomic Characterization and Wetland Occurrence of a Novel Campylobacter Isolate from Canada Geese. ''Microorganisms''. 2023 Mar 3; '''11''' (3):
OrthoPhy: A Program to Construct Ortholog Data Sets Using Taxonomic Information. Description: Watanabe, Tomoaki, et al. OrthoPhy: A Program to Construct Ortholog Data Sets Using Taxonomic Information. ''Genome Biol Evol''. 2023 Mar 3; '''15''' (3):
Tapping Culture Collections for Fungal Endophytes: First Genome Assemblies for Three Genera and Five Species in the Ascomycota. Description: Hill, Rowena, et al. Tapping Culture Collections for Fungal Endophytes: First Genome Assemblies for Three Genera and Five Species in the Ascomycota. ''Genome Biol Evol''. 2023 Mar 3; '''15''' (3):
Genome Size Changes by Duplication, Divergence, and Insertion in Caenorhabditis Worms. Description: Adams, Paula E, et al. Genome Size Changes by Duplication, Divergence, and Insertion in Caenorhabditis Worms. ''Mol Biol Evol''. 2023 Mar 4; '''40''' (3):
Trophic level and proteobacteria abundance drive antibiotic resistance levels in fish from coastal New England. Description: Korry, Benjamin J, et al. Trophic level and proteobacteria abundance drive antibiotic resistance levels in fish from coastal New England. ''Anim Microbiome''. 2023 Mar 6; '''5''' (1):16
Exploring the longer-term impact of the COVID-19 pandemic on physical and mental health of people with inflammatory rheumatic diseases: a cross-sectional survey. Description: Hider, Samantha, et al. Exploring the longer-term impact of the COVID-19 pandemic on physical and mental health of people with inflammatory rheumatic diseases: a cross-sectional survey. ''Clin Rheumatol''. 2023 Mar 7; 1-7
LED omics in Rocket Salad (Diplotaxis tenuifolia): Comparative Analysis in Different Light-Emitting Diode (LED) Spectrum and Energy Consumption. Description: Tsaballa, Aphrodite, et al. LED omics in Rocket Salad (Diplotaxis tenuifolia): Comparative Analysis in Different Light-Emitting Diode (LED) Spectrum and Energy Consumption. ''Plants (Basel)''. 2023 Mar 7; '''12''' (6):
Rumen microbial-driven metabolite from grazing lambs potentially regulates body fatty acid metabolism by lipid-related genes in liver. Description: Li, Zhen, et al. Rumen microbial-driven metabolite from grazing lambs potentially regulates body fatty acid metabolism by lipid-related genes in liver. ''J Anim Sci Biotechnol''. 2023 Mar 7; '''14''' (1):39
Genome Analysis of Pseudomonas aeruginosa Strains from Chronically Infected Patients with High Levels of Persister Formation. Description: Baiomy, Amr A, et al. Genome Analysis of Pseudomonas aeruginosa Strains from Chronically Infected Patients with High Levels of Persister Formation. ''Pathogens''. 2023 Mar 8; '''12''' (3):
Latent antibiotic resistance genes are abundant, diverse, and mobile in human, animal, and environmental microbiomes. Description: Inda-Diaz, Juan Salvador, et al. Latent antibiotic resistance genes are abundant, diverse, and mobile in human, animal, and environmental microbiomes. ''Microbiome''. 2023 Mar 8; '''11''' (1):44
Development of the oral resistome during the first decade of life. Description: Sukumar, Smitha, et al. Development of the oral resistome during the first decade of life. ''Nat Commun''. 2023 Mar 9; '''14''' (1):1291
The chromosome-scale genome assembly of the yellowtail clownfish Amphiprion clarkii provides insights into the melanic pigmentation of anemonefish. Description: Moore, Billy, et al. The chromosome-scale genome assembly of the yellowtail clownfish Amphiprion clarkii provides insights into the melanic pigmentation of anemonefish. ''G3 (Bethesda)''. 2023 Mar 9; '''13''' (3):
Use of Shotgun Metagenomics to Assess the Microbial Diversity and Hydrocarbons Degrading Functions of Auto-Mechanic Workshops Soils Polluted with Gasoline and Diesel Fuel. Description: Goma-Tchimbakala, Emerance Jessica Claire D'Assise, et al. Use of Shotgun Metagenomics to Assess the Microbial Diversity and Hydrocarbons Degrading Functions of Auto-Mechanic Workshops Soils Polluted with Gasoline and Diesel Fuel. ''Microorganisms''. 2023 Mar 10; '''11''' (3):
Changes in community structures and functions of the gut microbiomes of deep-sea cold seep mussels during in situ transplantation experiment. Description: Xiao, Yao, et al. Changes in community structures and functions of the gut microbiomes of deep-sea cold seep mussels during in situ transplantation experiment. ''Anim Microbiome''. 2023 Mar 11; '''5''' (1):17
Comprehensive genome analysis of Burkholderia contaminans SK875, a quorum-sensing strain isolated from the swine. Description: Kim, Eiseul, et al. Comprehensive genome analysis of Burkholderia contaminans SK875, a quorum-sensing strain isolated from the swine. ''AMB Express''. 2023 Mar 11; '''13''' (1):30
A Comprehensive Investigation into the Crystallology, Molecule, and Quantum Chemistry Properties of Two New Hydrous Long-Chain Dibasic Ammonium Salts C(n)H(2n+8)N(2)O(6) (n = 35 and 37). Description: Ke, Zengbo, et al. A Comprehensive Investigation into the Crystallology, Molecule, and Quantum Chemistry Properties of Two New Hydrous Long-Chain Dibasic Ammonium Salts C(n)H(2n+8)N(2)O(6) (n = 35 and 37). ''Int J Mol Sci''. 2023 Mar 13; '''24''' (6):
A reference-grade genome assembly for Astragalus mongholicus and insights into the biosynthesis and high accumulation of triterpenoids and flavonoids in its roots. Description: Chen, Yi, et al. A reference-grade genome assembly for Astragalus mongholicus and insights into the biosynthesis and high accumulation of triterpenoids and flavonoids in its roots. ''Plant Commun''. 2023 Mar 13; '''4''' (2):100469
Aspergillus fumigatus Can Display Persistence to the Fungicidal Drug Voriconazole. Description: Scott, Jennifer, et al. Aspergillus fumigatus Can Display Persistence to the Fungicidal Drug Voriconazole. ''Microbiol Spectr''. 2023 Mar 13; '''11''' (2):e0477022
AFTM: a database of transmembrane regions in the human proteome predicted by AlphaFold. Description: Pei, Jimin, et al. AFTM: a database of transmembrane regions in the human proteome predicted by AlphaFold. ''Database (Oxford)''. 2023 Mar 14; '''2023''':
A holobiont approach towards polysaccharide degradation by the highly compartmentalised gut system of the soil-feeding higher termite Labiotermes labralis. Description: Marynowska, Martyna, et al. A holobiont approach towards polysaccharide degradation by the highly compartmentalised gut system of the soil-feeding higher termite Labiotermes labralis. ''BMC Genomics''. 2023 Mar 15; '''24''' (1):115
Combining Metabolomics and Transcriptomics to Reveal the Regulatory Mechanism of Taproot Enlargement in Panax ginseng. Description: Zhang, Meng, et al. Combining Metabolomics and Transcriptomics to Reveal the Regulatory Mechanism of Taproot Enlargement in Panax ginseng. ''Int J Mol Sci''. 2023 Mar 15; '''24''' (6):
Low dissolved oxygen supply functions as a global regulator of the growth and metabolism of Aurantiochytrium sp. PKU#Mn16 in the early stages of docosahexaenoic acid fermentation. Description: Liu, Lu, et al. Low dissolved oxygen supply functions as a global regulator of the growth and metabolism of Aurantiochytrium sp. PKU#Mn16 in the early stages of docosahexaenoic acid fermentation. ''Microb Cell Fact''. 2023 Mar 15; '''22''' (1):52
Molecular docking with SARS-CoV-2 and potential drug property of a bioactive novel Zn(II) polymer: A combined experimental and theoretical study. Description: Nashre-Ul-Islam, Swah Mohd, et al. Molecular docking with SARS-CoV-2 and potential drug property of a bioactive novel Zn(II) polymer: A combined experimental and theoretical study. ''Polyhedron''. 2023 Mar 15; '''233''': 116304
Unravelling the limb regeneration mechanisms of Polypedates maculatus, a sub-tropical frog, by transcriptomics. Description: Mahapatra, Cuckoo, et al. Unravelling the limb regeneration mechanisms of Polypedates maculatus, a sub-tropical frog, by transcriptomics. ''BMC Genomics''. 2023 Mar 16; '''24''' (1):122
A Global Survey of the Full-Length Transcriptome of Apis mellifera by Single-Molecule Long-Read Sequencing. Description: Zheng, Shuang-Yan, et al. A Global Survey of the Full-Length Transcriptome of Apis mellifera by Single-Molecule Long-Read Sequencing. ''Int J Mol Sci''. 2023 Mar 18; '''24''' (6):
Transcriptomic and Metabolomic Profiles Provide Insights into the Red-Stipe Symptom of Morel Fruiting Bodies. Description: Yang, Chi, et al. Transcriptomic and Metabolomic Profiles Provide Insights into the Red-Stipe Symptom of Morel Fruiting Bodies. ''J Fungi (Basel)''. 2023 Mar 18; '''9''' (3):
Characterization of a novel papillomavirus identified from a whale (Delphinapterus leucas) pharyngeal metagenomic library. Description: Lu, Xiang, et al. Characterization of a novel papillomavirus identified from a whale (Delphinapterus leucas) pharyngeal metagenomic library. ''Virol J''. 2023 Mar 20; '''20''' (1):48
Chromosome-Level Genome Assembly of Papilio elwesi Leech, 1889 (Lepidoptera: Papilionidae). Description: Pan, Zhixiang, et al. Chromosome-Level Genome Assembly of Papilio elwesi Leech, 1889 (Lepidoptera: Papilionidae). ''Insects''. 2023 Mar 21; '''14''' (3):
CT-derived fractional flow reserve for prediction of major adverse cardiovascular events in diabetic patients. Description: Lan, Ziting, et al. CT-derived fractional flow reserve for prediction of major adverse cardiovascular events in diabetic patients. ''Cardiovasc Diabetol''. 2023 Mar 21; '''22''' (1):65
Genome mining unveils a class of ribosomal peptides with two amino termini. Description: Ren, Hengqian, et al. Genome mining unveils a class of ribosomal peptides with two amino termini. ''Nat Commun''. 2023 Mar 23; '''14''' (1):1624
Hybrid De Novo Whole-Genome Assembly, Annotation, and Identification of Secondary Metabolite Gene Clusters in the Ex-Type Strain of Chrysosporium keratinophilum. Description: Granados-Casas, Alan Omar, et al. Hybrid De Novo Whole-Genome Assembly, Annotation, and Identification of Secondary Metabolite Gene Clusters in the Ex-Type Strain of Chrysosporium keratinophilum. ''J Fungi (Basel)''. 2023 Mar 23; '''9''' (4):
Differential effects of Bacillus subtilis- and Bacillus licheniformis-fermented products on growth performance, intestinal morphology, intestinal antioxidant and barrier function gene expression, cecal microbiota community, and microbial carbohydra... Description: Chen, Yu-Wei, et al. Differential effects of Bacillus subtilis- and Bacillus licheniformis-fermented products on growth performance, intestinal morphology, intestinal antioxidant and barrier function gene expression, cecal microbiota community, and microbial carbohydrate-active enzyme composition in broilers. ''Poult Sci''. 2023 Mar 24; '''102''' (6):102670
Metagenome Analysis Identifies Microbial Shifts upon Deoxynivalenol Exposure and Post-Exposure Recovery in the Mouse Gut. Description: Jin, Jing, et al. Metagenome Analysis Identifies Microbial Shifts upon Deoxynivalenol Exposure and Post-Exposure Recovery in the Mouse Gut. ''Toxins (Basel)''. 2023 Mar 25; '''15''' (4):
Comparison of gut viral communities in children under 5 years old and newborns. Description: Li, Hong, et al. Comparison of gut viral communities in children under 5 years old and newborns. ''Virol J''. 2023 Mar 27; '''20''' (1):52
Soil contamination in nearby natural areas mirrors that in urban greenspaces worldwide. Description: Liu, Yu-Rong, et al. Soil contamination in nearby natural areas mirrors that in urban greenspaces worldwide. ''Nat Commun''. 2023 Mar 27; '''14''' (1):1706
Soil conditions and the plant microbiome boost the accumulation of monoterpenes in the fruit of Citrus reticulata 'Chachi'. Description: Su, Jianmu, et al. Soil conditions and the plant microbiome boost the accumulation of monoterpenes in the fruit of Citrus reticulata 'Chachi'. ''Microbiome''. 2023 Mar 28; '''11''' (1):61
Viral and Bacterial Communities Collaborate through Complementary Assembly Processes in Soil to Survive Organochlorine Contamination. Description: Yuan, Shujian, et al. Viral and Bacterial Communities Collaborate through Complementary Assembly Processes in Soil to Survive Organochlorine Contamination. ''Appl Environ Microbiol''. 2023 Mar 29; '''89''' (3):e0181022
Abundance, classification and genetic potential of Thaumarchaeota in metagenomes of European agricultural soils: a meta-analysis. Description: Nelkner, Johanna, et al. Abundance, classification and genetic potential of Thaumarchaeota in metagenomes of European agricultural soils: a meta-analysis. ''Environ Microbiome''. 2023 Mar 30; '''18''' (1):26
A First Insight into the Microbial and Viral Communities of Comau Fjord-A Unique Human-Impacted Ecosystem in Patagonia (42( composite function) S). Description: Guajardo-Leiva, Sergio, et al. A First Insight into the Microbial and Viral Communities of Comau Fjord-A Unique Human-Impacted Ecosystem in Patagonia (42( composite function) S). ''Microorganisms''. 2023 Mar 30; '''11''' (4):
Saccharopolyspora sp. NFXS83 in Marine Biotechnological Applications: From Microalgae Growth Promotion to the Production of Secondary Metabolites. Description: Bertrand, Constanca D F, et al. Saccharopolyspora sp. NFXS83 in Marine Biotechnological Applications: From Microalgae Growth Promotion to the Production of Secondary Metabolites. ''Microorganisms''. 2023 Mar 30; '''11''' (4):
Novel evolved Yarrowia lipolytica strains for enhanced growth and lipid content under high concentrations of crude glycerol. Description: Tsirigka, Asimina, et al. Novel evolved Yarrowia lipolytica strains for enhanced growth and lipid content under high concentrations of crude glycerol. ''Microb Cell Fact''. 2023 Mar 31; '''22''' (1):62
Adeno-Associated Virus 2 and Human Adenovirus F41 in Wastewater during Outbreak of Severe Acute Hepatitis in Children, Ireland. Description: Martin, Niamh A, et al. Adeno-Associated Virus 2 and Human Adenovirus F41 in Wastewater during Outbreak of Severe Acute Hepatitis in Children, Ireland. ''Emerg Infect Dis''. 2023 Apr; '''29''' (4):751-760
A hydrogenotrophic Sulfurimonas is globally abundant in deep-sea oxygen-saturated hydrothermal plumes. Description: Molari, Massimiliano, et al. A hydrogenotrophic Sulfurimonas is globally abundant in deep-sea oxygen-saturated hydrothermal plumes. ''Nat Microbiol''. 2023 Apr; '''8''' (4):651-665
Altered vaginal eukaryotic virome is associated with different cervical disease status. Description: Li, Yanpeng, et al. Altered vaginal eukaryotic virome is associated with different cervical disease status. ''Virol Sin''. 2023 Apr; '''38''' (2):184-197
A survey on antimicrobial resistance genes of frequently used probiotic bacteria, 1901 to 2022. Description: Toth, Adrienn Greta, et al. A survey on antimicrobial resistance genes of frequently used probiotic bacteria, 1901 to 2022. ''Euro Surveill''. 2023 Apr; '''28''' (14):
Comparative transcriptomics of aphid species that diverged > 22 MYA reveals genes that are important for the maintenance of their symbiosis. Description: Argandona, Jacob A, et al. Comparative transcriptomics of aphid species that diverged > 22 MYA reveals genes that are important for the maintenance of their symbiosis. ''Sci Rep''. 2023 Apr 1; '''13''' (1):5341
Genome enrichment of rare and unknown species from complicated microbiomes by nanopore selective sequencing. Description: Sun, Yuhong, et al. Genome enrichment of rare and unknown species from complicated microbiomes by nanopore selective sequencing. ''Genome Res''. 2023 Apr; '''33''' (4):612-621
Molecular hydrogen in seawater supports growth of diverse marine bacteria. Description: Lappan, Rachael, et al. Molecular hydrogen in seawater supports growth of diverse marine bacteria. ''Nat Microbiol''. 2023 Apr; '''8''' (4):581-595
Physiological and genomic insights into abiotic stress of halophilic archaeon Natrinema altunense 4.1R isolated from a saline ecosystem of Tunisian desert. Description: Najjari, Afef, et al. Physiological and genomic insights into abiotic stress of halophilic archaeon Natrinema altunense 4.1R isolated from a saline ecosystem of Tunisian desert. ''Genetica''. 2023 Apr; '''151''' (2):133-152
RNA virus discoveries in the electric ant, Wasmannia auropunctata. Description: Valles, Steven M, et al. RNA virus discoveries in the electric ant, Wasmannia auropunctata. ''Virus Genes''. 2023 Apr; '''59''' (2):276-289
Soil microbial gene expression in an agricultural ecosystem varies with time and neonicotinoid seed treatments. Description: Parizadeh, Mona, et al. Soil microbial gene expression in an agricultural ecosystem varies with time and neonicotinoid seed treatments. ''Microbiology (Reading)''. 2023 Apr; '''169''' (4):
Structural basis of the inhibition of cystathionine gamma-lyase from Toxoplasma gondii by propargylglycine and cysteine. Description: Fernandez-Rodriguez, Carmen, et al. Structural basis of the inhibition of cystathionine gamma-lyase from Toxoplasma gondii by propargylglycine and cysteine. ''Protein Sci''. 2023 Apr; '''32''' (4):e4619
Systematic comparison of unilamellar vesicles reveals that archaeal core lipid membranes are more permeable than bacterial membranes. Description: Lapinska, Urszula, et al. Systematic comparison of unilamellar vesicles reveals that archaeal core lipid membranes are more permeable than bacterial membranes. ''PLoS Biol''. 2023 Apr; '''21''' (4):e3002048
Virome diversity of ticks feeding on domestic mammals in China. Description: Yang, Zijun, et al. Virome diversity of ticks feeding on domestic mammals in China. ''Virol Sin''. 2023 Apr; '''38''' (2):208-221
Ecological change of the gut microbiota during pregnancy and progression to dyslipidemia. Description: Yang, Xu, et al. Ecological change of the gut microbiota during pregnancy and progression to dyslipidemia. ''NPJ Biofilms Microbiomes''. 2023 Apr 3; '''9''' (1):14
Reference genomes of channel catfish and blue catfish reveal multiple pericentric chromosome inversions. Description: Waldbieser, Geoffrey C, et al. Reference genomes of channel catfish and blue catfish reveal multiple pericentric chromosome inversions. ''BMC Biol''. 2023 Apr 3; '''21''' (1):67
Stop or Not: Genome-Wide Profiling of Reassigned Stop Codons in Ciliates. Description: Chen, Wenbing, et al. Stop or Not: Genome-Wide Profiling of Reassigned Stop Codons in Ciliates. ''Mol Biol Evol''. 2023 Apr 4; '''40''' (4):
Vertically stratified methane, nitrogen and sulphur cycling and coupling mechanisms in mangrove sediment microbiomes. Description: Qian, Lu, et al. Vertically stratified methane, nitrogen and sulphur cycling and coupling mechanisms in mangrove sediment microbiomes. ''Microbiome''. 2023 Apr 5; '''11''' (1):71
Combined PacBio Iso-Seq and Illumina RNA-Seq Analysis of the Tuta absoluta (Meyrick) Transcriptome and Cytochrome P450 Genes. Description: Liu, Min, et al. Combined PacBio Iso-Seq and Illumina RNA-Seq Analysis of the Tuta absoluta (Meyrick) Transcriptome and Cytochrome P450 Genes. ''Insects''. 2023 Apr 6; '''14''' (4):
Land use modification causes slow, but predictable, change in soil microbial community composition and functional potential. Description: Louisson, Z, et al. Land use modification causes slow, but predictable, change in soil microbial community composition and functional potential. ''Environ Microbiome''. 2023 Apr 6; '''18''' (1):30
Genome Mining and Screening for Secondary Metabolite Production in the Endophytic Fungus Dactylonectria alcacerensis CT-6. Description: Ming, Qianliang, et al. Genome Mining and Screening for Secondary Metabolite Production in the Endophytic Fungus Dactylonectria alcacerensis CT-6. ''Microorganisms''. 2023 Apr 8; '''11''' (4):
Advances in Clinical Cardiology 2022: A Summary of Key Clinical Trials. Description: Savage, Patrick, et al. Advances in Clinical Cardiology 2022: A Summary of Key Clinical Trials. ''Adv Ther''. 2023 Apr 13; 1-31
Development of the High-Affinity Carborane-Based Cannabinoid Receptor Type 2 PET Ligand [(18)F]LUZ5-d(8). Description: Ueberham, Lea, et al. Development of the High-Affinity Carborane-Based Cannabinoid Receptor Type 2 PET Ligand [(18)F]LUZ5-d(8). ''J Med Chem''. 2023 Apr 13; '''66''' (7):5242-5260
Children with autism show differences in the gut DNA virome compared to non-autistic children: a case control study. Description: Qu, Aina, et al. Children with autism show differences in the gut DNA virome compared to non-autistic children: a case control study. ''BMC Pediatr''. 2023 Apr 14; '''23''' (1):174
Histopathological Analysis of Selected Organs of Rats with Congenital Babesiosis Caused by Babesia microti. Description: Jasik, Krzysztof, et al. Histopathological Analysis of Selected Organs of Rats with Congenital Babesiosis Caused by Babesia microti. ''Vet Sci''. 2023 Apr 14; '''10''' (4):
Differences in gut microbiota and its metabolic function among different fasting plasma glucose groups in Mongolian population of China. Description: Liu, Yanchao, et al. Differences in gut microbiota and its metabolic function among different fasting plasma glucose groups in Mongolian population of China. ''BMC Microbiol''. 2023 Apr 15; '''23''' (1):102
Large-scale invasion of unicellular eukaryotic genomes by integrating DNA viruses. Description: Bellas, Christopher, et al. Large-scale invasion of unicellular eukaryotic genomes by integrating DNA viruses. ''Proc Natl Acad Sci U S A''. 2023 Apr 18; '''120''' (16):e2300465120
Genomic Analysis of Infectious Bursal Disease Virus in Nigeria: Identification of Unique Mutations of Yet Unknown Biological Functions in Both Segments A and B. Description: Nwagbo, Ijeoma, et al. Genomic Analysis of Infectious Bursal Disease Virus in Nigeria: Identification of Unique Mutations of Yet Unknown Biological Functions in Both Segments A and B. ''Vaccines (Basel)''. 2023 Apr 19; '''11''' (4):
Genomic insight of sulfate reducing bacterial genus Desulfofaba reveals their metabolic versatility in biogeochemical cycling. Description: Gao, Ping, et al. Genomic insight of sulfate reducing bacterial genus Desulfofaba reveals their metabolic versatility in biogeochemical cycling. ''BMC Genomics''. 2023 Apr 19; '''24''' (1):209
Cation Charge as a Tool to Change Dimensionality in Organic-Inorganic Hybrids Based on Copper Thiocyanate Templated by 1,4-Diazabicyclo[2.2.2]octane. Description: Goreshnik, Evgeny, et al. Cation Charge as a Tool to Change Dimensionality in Organic-Inorganic Hybrids Based on Copper Thiocyanate Templated by 1,4-Diazabicyclo[2.2.2]octane. ''Molecules''. 2023 Apr 20; '''28''' (8):
First Isolation and Genome Sequence Analysis of West Nile Virus in Mosquitoes in Brazil. Description: Neto, Joaquim Pinto Nunes, et al. First Isolation and Genome Sequence Analysis of West Nile Virus in Mosquitoes in Brazil. ''Trop Med Infect Dis''. 2023 Apr 20; '''8''' (4):
Integrated Analysis of miRNAome and Transcriptome Identify Regulators of Elm Seed Aging. Description: Ye, Tiantian, et al. Integrated Analysis of miRNAome and Transcriptome Identify Regulators of Elm Seed Aging. ''Plants (Basel)''. 2023 Apr 20; '''12''' (8):
Metagenome and metabolome insights into the energy compensation and exogenous toxin degradation of gut microbiota in high-altitude rhesus macaques (Macaca mulatta). Description: Zhao, Junsong, et al. Metagenome and metabolome insights into the energy compensation and exogenous toxin degradation of gut microbiota in high-altitude rhesus macaques (Macaca mulatta). ''NPJ Biofilms Microbiomes''. 2023 Apr 20; '''9''' (1):20
Swine farm groundwater is a hidden hotspot for antibiotic-resistant pathogenic Acinetobacter. Description: Gao, Fang-Zhou, et al. Swine farm groundwater is a hidden hotspot for antibiotic-resistant pathogenic Acinetobacter. ''ISME Commun''. 2023 Apr 20; '''3''' (1):34
The Colorectal Cancer Gut Environment Regulates Activity of the Microbiome and Promotes the Multidrug Resistant Phenotype of ESKAPE and Other Pathogens. Description: Lamaudiere, Matthew T F, et al. The Colorectal Cancer Gut Environment Regulates Activity of the Microbiome and Promotes the Multidrug Resistant Phenotype of ESKAPE and Other Pathogens. ''mSphere''. 2023 Apr 20; '''8''' (2):e0062622
The Colorectal Cancer Microbiota Alter Their Transcriptome To Adapt to the Acidity, Reactive Oxygen Species, and Metabolite Availability of Gut Microenvironments. Description: Lamaudiere, Matthew T F, et al. The Colorectal Cancer Microbiota Alter Their Transcriptome To Adapt to the Acidity, Reactive Oxygen Species, and Metabolite Availability of Gut Microenvironments. ''mSphere''. 2023 Apr 20; '''8''' (2):e0062722
Gut microbiome responds compositionally and functionally to the seasonal diet variations in wild gibbons. Description: Li, Qi, et al. Gut microbiome responds compositionally and functionally to the seasonal diet variations in wild gibbons. ''NPJ Biofilms Microbiomes''. 2023 Apr 21; '''9''' (1):21
Genome Re-Annotation and Transcriptome Analyses of Sanghuangporus sanghuang. Description: Shen, Zi-Qi, et al. Genome Re-Annotation and Transcriptome Analyses of Sanghuangporus sanghuang. ''J Fungi (Basel)''. 2023 Apr 23; '''9''' (5):
Positive mood-related gut microbiota in a long-term closed environment: a multiomics study based on the "Lunar Palace 365" experiment. Description: Hao, Zikai, et al. Positive mood-related gut microbiota in a long-term closed environment: a multiomics study based on the "Lunar Palace 365" experiment. ''Microbiome''. 2023 Apr 24; '''11''' (1):88
Genomic Features Predict Bacterial Life History Strategies in Soil, as Identified by Metagenomic Stable Isotope Probing. Description: Barnett, Samuel E, et al. Genomic Features Predict Bacterial Life History Strategies in Soil, as Identified by Metagenomic Stable Isotope Probing. ''mBio''. 2023 Apr 25; '''14''' (2):e0358422
A systematically biosynthetic investigation of lactic acid bacteria reveals diverse antagonistic bacteriocins that potentially shape the human microbiome. Description: Zhang, Dengwei, et al. A systematically biosynthetic investigation of lactic acid bacteria reveals diverse antagonistic bacteriocins that potentially shape the human microbiome. ''Microbiome''. 2023 Apr 27; '''11''' (1):91
Giant Virus Infection Signatures Are Modulated by Euphotic Zone Depth Strata and Iron Regimes of the Subantarctic Southern Ocean. Description: Gilbert, Naomi E, et al. Giant Virus Infection Signatures Are Modulated by Euphotic Zone Depth Strata and Iron Regimes of the Subantarctic Southern Ocean. ''mSystems''. 2023 Apr 27; '''8''' (2):e0126022
Interaction between Microbes and Host in Sow Vaginas in Early Pregnancy. Description: Zang, Xupeng, et al. Interaction between Microbes and Host in Sow Vaginas in Early Pregnancy. ''mSystems''. 2023 Apr 27; '''8''' (2):e0119222
Metagenomic Discovery of "Candidatus Parvarchaeales"-Related Lineages Sheds Light on Adaptation and Diversification from Neutral-Thermal to Acidic-Mesothermal Environments. Description: Rao, Yang-Zhi, et al. Metagenomic Discovery of "Candidatus Parvarchaeales"-Related Lineages Sheds Light on Adaptation and Diversification from Neutral-Thermal to Acidic-Mesothermal Environments. ''mSystems''. 2023 Apr 27; '''8''' (2):e0125222
Quantifying Shared and Unique Gene Content across 17 Microbial Ecosystems. Description: Zimmerman, Samuel, et al. Quantifying Shared and Unique Gene Content across 17 Microbial Ecosystems. ''mSystems''. 2023 Apr 27; '''8''' (2):e0011823
Spatiotemporal Dynamics of Coastal Viral Community Structure and Potential Biogeochemical Roles Affected by an Ulva prolifera Green Tide. Description: Han, Meiaoxue, et al. Spatiotemporal Dynamics of Coastal Viral Community Structure and Potential Biogeochemical Roles Affected by an Ulva prolifera Green Tide. ''mSystems''. 2023 Apr 27; '''8''' (2):e0121122
A Recombinant Chimeric Cedar Virus-Based Surrogate Neutralization Assay Platform for Pathogenic Henipaviruses. Description: Amaya, Moushimi, et al. A Recombinant Chimeric Cedar Virus-Based Surrogate Neutralization Assay Platform for Pathogenic Henipaviruses. ''Viruses''. 2023 Apr 28; '''15''' (5):
Changes of gut microbiota reflect the severity of major depressive disorder: a cross sectional study. Description: Hu, Xi, et al. Changes of gut microbiota reflect the severity of major depressive disorder: a cross sectional study. ''Transl Psychiatry''. 2023 Apr 28; '''13''' (1):137
Gut microbiome and serum metabolome analyses identify biomarkers associated with sexual maturity in quails. Description: Xiong, Xinwei, et al. Gut microbiome and serum metabolome analyses identify biomarkers associated with sexual maturity in quails. ''Poult Sci''. 2023 Apr 28; '''102''' (7):102762
Virus diversity, wildlife-domestic animal circulation and potential zoonotic viruses of small mammals, pangolins and zoo animals. Description: Cui, Xinyuan, et al. Virus diversity, wildlife-domestic animal circulation and potential zoonotic viruses of small mammals, pangolins and zoo animals. ''Nat Commun''. 2023 Apr 29; '''14''' (1):2488
Polycyclic aromatic hydrocarbon (PAH) biodegradation capacity revealed by a genome-function relationship approach. Description: Huang, Yue, et al. Polycyclic aromatic hydrocarbon (PAH) biodegradation capacity revealed by a genome-function relationship approach. ''Environ Microbiome''. 2023 Apr 30; '''18''' (1):39
Glycine protects against doxorubicin-induced heart toxicity in mice. Description: Shosha, Mayada I, et al. Glycine protects against doxorubicin-induced heart toxicity in mice. ''Amino Acids''. 2023 May; '''55''' (5):679-693
Gut Microbiota is Associated with Aging-Related Processes of a Small Mammal Species under High-Density Crowding Stress. Description: Xu, Xiaoming, et al. Gut Microbiota is Associated with Aging-Related Processes of a Small Mammal Species under High-Density Crowding Stress. ''Adv Sci (Weinh)''. 2023 May; '''10''' (14):e2205346
Independent origins and evolution of the secondary replicons of the class Gammaproteobacteria. Description: Riccardi, Christopher, et al. Independent origins and evolution of the secondary replicons of the class Gammaproteobacteria. ''Microb Genom''. 2023 May; '''9''' (5):
Predicting yield of individual field-grown rapeseed plants from rosette-stage leaf gene expression. Description: De Meyer, Sam, et al. Predicting yield of individual field-grown rapeseed plants from rosette-stage leaf gene expression. ''PLoS Comput Biol''. 2023 May; '''19''' (5):e1011161
Profiling the human intestinal environment under physiological conditions. Description: Shalon, Dari, et al. Profiling the human intestinal environment under physiological conditions. ''Nature''. 2023 May; '''617''' (7961):581-591
The fine-scale recombination rate variation and associations with genomic features in a butterfly. Description: Palahi I Torres, Aleix, et al. The fine-scale recombination rate variation and associations with genomic features in a butterfly. ''Genome Res''. 2023 May; '''33''' (5):810-823
Viruses interact with hosts that span distantly related microbial domains in dense hydrothermal mats. Description: Hwang, Yunha, et al. Viruses interact with hosts that span distantly related microbial domains in dense hydrothermal mats. ''Nat Microbiol''. 2023 May; '''8''' (5):946-957
An improved reference of the grapevine genome reasserts the origin of the PN40024 highly homozygous genotype. Description: Velt, Amandine, et al. An improved reference of the grapevine genome reasserts the origin of the PN40024 highly homozygous genotype. ''G3 (Bethesda)''. 2023 May 2; '''13''' (5):
The transcriptome of Icerya aegyptiaca (Hemiptera: Monophlebidae) and comparison with neococcoids reveal genetic clues of evolution in the scale insects. Description: Tang, Xue-Fei, et al. The transcriptome of Icerya aegyptiaca (Hemiptera: Monophlebidae) and comparison with neococcoids reveal genetic clues of evolution in the scale insects. ''BMC Genomics''. 2023 May 3; '''24''' (1):231
HOTSPOT: hierarchical host prediction for assembled plasmid contigs with transformer. Description: Ji, Yongxin, et al. HOTSPOT: hierarchical host prediction for assembled plasmid contigs with transformer. ''Bioinformatics''. 2023 May 4; '''39''' (5):
First Whole Genome Sequence and Flow Cytometry Genome Size Data for the Lichen-Forming Fungus Ramalina farinacea (Ascomycota). Description: Llewellyn, Theo, et al. First Whole Genome Sequence and Flow Cytometry Genome Size Data for the Lichen-Forming Fungus Ramalina farinacea (Ascomycota). ''Genome Biol Evol''. 2023 May 7; '''15''' (5):
Gut microbiota-derived 3-phenylpropionic acid promotes intestinal epithelial barrier function via AhR signaling. Description: Hu, Jun, et al. Gut microbiota-derived 3-phenylpropionic acid promotes intestinal epithelial barrier function via AhR signaling. ''Microbiome''. 2023 May 8; '''11''' (1):102
Anastomosis Groups and Mycovirome of Rhizoctonia Isolates Causing Sugar Beet Root and Crown Rot and Their Sensitivity to Flutolanil, Thifluzamide, and Pencycuron. Description: Zhao, Can, et al. Anastomosis Groups and Mycovirome of Rhizoctonia Isolates Causing Sugar Beet Root and Crown Rot and Their Sensitivity to Flutolanil, Thifluzamide, and Pencycuron. ''J Fungi (Basel)''. 2023 May 9; '''9''' (5):
Biosynthetic Potential of Hypogymnia Holobionts: Insights into Secondary Metabolite Pathways. Description: Ahmad, Nadim, et al. Biosynthetic Potential of Hypogymnia Holobionts: Insights into Secondary Metabolite Pathways. ''J Fungi (Basel)''. 2023 May 9; '''9''' (5):
Haplotype-resolved genome assembly of Coriaria nepalensis a non-legume nitrogen-fixing shrub. Description: Zhao, Shi-Wei, et al. Haplotype-resolved genome assembly of Coriaria nepalensis a non-legume nitrogen-fixing shrub. ''Sci Data''. 2023 May 9; '''10''' (1):259
Highly host-linked viromes in the built environment possess habitat-dependent diversity and functions for potential virus-host coevolution. Description: Du, Shicong, et al. Highly host-linked viromes in the built environment possess habitat-dependent diversity and functions for potential virus-host coevolution. ''Nat Commun''. 2023 May 9; '''14''' (1):2676
Isolation and Genome-Based Characterization of Biocontrol Potential of Bacillus siamensis YB-1631 against Wheat Crown Rot Caused by Fusarium pseudograminearum. Description: Dong, Qianqian, et al. Isolation and Genome-Based Characterization of Biocontrol Potential of Bacillus siamensis YB-1631 against Wheat Crown Rot Caused by Fusarium pseudograminearum. ''J Fungi (Basel)''. 2023 May 9; '''9''' (5):
Multi-omics reveals that the host-microbiome metabolism crosstalk of differential rumen bacterial enterotypes can regulate the milk protein synthesis of dairy cows. Description: Zhang, Chenguang, et al. Multi-omics reveals that the host-microbiome metabolism crosstalk of differential rumen bacterial enterotypes can regulate the milk protein synthesis of dairy cows. ''J Anim Sci Biotechnol''. 2023 May 9; '''14''' (1):63
Detection and Phylogenetic Characterization of a Novel Adenovirus Found in Lesser Mouse-Eared Bat (Myotis blythii) in South Kazakhstan. Description: Karamendin, Kobey, et al. Detection and Phylogenetic Characterization of a Novel Adenovirus Found in Lesser Mouse-Eared Bat (Myotis blythii) in South Kazakhstan. ''Viruses''. 2023 May 10; '''15''' (5):
Identification of Trichomonas vaginalis 5-Nitroimidazole Resistance Targets. Description: Graves, Keonte J, et al. Identification of Trichomonas vaginalis 5-Nitroimidazole Resistance Targets. ''Pathogens''. 2023 May 10; '''12''' (5):
Novel Rodent Arterivirus Detected in the Brazilian Amazon. Description: da Paz, Thito Y Bezerra, et al. Novel Rodent Arterivirus Detected in the Brazilian Amazon. ''Viruses''. 2023 May 11; '''15''' (5):
A Chromosome-level Genome Assembly and Evolution Analysis of Andrena camellia (Hymenoptera: Andrenidae). Description: Zhao, Kaixuan, et al. A Chromosome-level Genome Assembly and Evolution Analysis of Andrena camellia (Hymenoptera: Andrenidae). ''Genome Biol Evol''. 2023 May 12; '''15''' (5):
Chromosome-level genome assembly of the spotted alfalfa aphid Therioaphis trifolii. Description: Huang, Tianyu, et al. Chromosome-level genome assembly of the spotted alfalfa aphid Therioaphis trifolii. ''Sci Data''. 2023 May 12; '''10''' (1):274
Differences in gut metagenomes between dairy workers and community controls: a cross-sectional study. Description: Trinh, Pauline, et al. Differences in gut metagenomes between dairy workers and community controls: a cross-sectional study. ''bioRxiv''. 2023 May 12;
Identification, Culture Characteristics and Whole-Genome Analysis of Pestalotiopsis neglecta Causing Black Spot Blight of Pinus sylvestris var. mongolica. Description: Yang, Jing, et al. Identification, Culture Characteristics and Whole-Genome Analysis of Pestalotiopsis neglecta Causing Black Spot Blight of Pinus sylvestris var. mongolica. ''J Fungi (Basel)''. 2023 May 12; '''9''' (5):
Generation of zero-valent sulfur from dissimilatory sulfate reduction in sulfate-reducing microorganisms. Description: Wang, Shanquan, et al. Generation of zero-valent sulfur from dissimilatory sulfate reduction in sulfate-reducing microorganisms. ''Proc Natl Acad Sci U S A''. 2023 May 16; '''120''' (20):e2220725120
Vertebrate-tropism of a cressdnavirus lineage implicated by poxvirus gene capture. Description: Kinsella, Cormac M, et al. Vertebrate-tropism of a cressdnavirus lineage implicated by poxvirus gene capture. ''Proc Natl Acad Sci U S A''. 2023 May 16; '''120''' (20):e2303844120
Distinct genomic routes underlie transitions to specialised symbiotic lifestyles in deep-sea annelid worms. Description: Moggioli, Giacomo, et al. Distinct genomic routes underlie transitions to specialised symbiotic lifestyles in deep-sea annelid worms. ''Nat Commun''. 2023 May 17; '''14''' (1):2814
Metagenomic analysis reveals specific BTEX degrading microorganisms of a bacterial consortium. Description: Wu, Hui-Jun, et al. Metagenomic analysis reveals specific BTEX degrading microorganisms of a bacterial consortium. ''AMB Express''. 2023 May 17; '''13''' (1):48
ODNA: Identification of Organellar DNA by Machine Learning. Description: Martin, Roman, et al. ODNA: Identification of Organellar DNA by Machine Learning. ''Bioinformatics''. 2023 May 17; '''39''' (5):
Sulfur metabolism in subtropical marine mangrove sediments fundamentally differs from other habitats as revealed by SMDB. Description: Mo, Shuming, et al. Sulfur metabolism in subtropical marine mangrove sediments fundamentally differs from other habitats as revealed by SMDB. ''Sci Rep''. 2023 May 19; '''13''' (1):8126
Virulent Phage vB_EfaS_WH1 Removes Enterococcus faecalis Biofilm and Inhibits Its Growth on the Surface of Chicken Meat. Description: Jin, Xinxin, et al. Virulent Phage vB_EfaS_WH1 Removes Enterococcus faecalis Biofilm and Inhibits Its Growth on the Surface of Chicken Meat. ''Viruses''. 2023 May 20; '''15''' (5):
Cross-Protection Induced by Highly Conserved Human B, CD4 (+,) and CD8 (+) T Cell Epitopes-Based Coronavirus Vaccine Against Severe Infection, Disease, and Death Caused by Multiple SARS-CoV-2 Variants of Concern. Description: Prakash, Swayam, et al. Cross-Protection Induced by Highly Conserved Human B, CD4 (+,) and CD8 (+) T Cell Epitopes-Based Coronavirus Vaccine Against Severe Infection, Disease, and Death Caused by Multiple SARS-CoV-2 Variants of Concern. ''bioRxiv''. 2023 May 24;
Microbes with higher metabolic independence are enriched in human gut microbiomes under stress. Description: Veseli, Iva, et al. Microbes with higher metabolic independence are enriched in human gut microbiomes under stress. ''bioRxiv''. 2023 May 26;
De novo transcriptome assembly and annotation for gene discovery in Salamandra salamandra at the larval stage. Description: Libro, Pietro, et al. De novo transcriptome assembly and annotation for gene discovery in Salamandra salamandra at the larval stage. ''Sci Data''. 2023 May 27; '''10''' (1):330
Water mass age structures the auxiliary metabolic gene content of free-living and particle-attached deep ocean viral communities. Description: Coutinho, Felipe H, et al. Water mass age structures the auxiliary metabolic gene content of free-living and particle-attached deep ocean viral communities. ''Microbiome''. 2023 May 27; '''11''' (1):118
Characteristics of methane emissions from alpine thermokarst lakes on the Tibetan Plateau. Description: Yang, Guibiao, et al. Characteristics of methane emissions from alpine thermokarst lakes on the Tibetan Plateau. ''Nat Commun''. 2023 May 30; '''14''' (1):3121
The gut microbiome modifies the associations of short- and long-term physical activity with body weight changes. Description: Wang, Kai, et al. The gut microbiome modifies the associations of short- and long-term physical activity with body weight changes. ''Microbiome''. 2023 May 30; '''11''' (1):121
Gut microbiome determines therapeutic effects of OCA on NAFLD by modulating bile acid metabolism. Description: Liu, Jianjun, et al. Gut microbiome determines therapeutic effects of OCA on NAFLD by modulating bile acid metabolism. ''NPJ Biofilms Microbiomes''. 2023 May 31; '''9''' (1):29
Accumulation of alpha-synuclein mediates podocyte injury in Fabry nephropathy. Description: Braun, Fabian, et al. Accumulation of alpha-synuclein mediates podocyte injury in Fabry nephropathy. ''J Clin Invest''. 2023 Jun 1; '''133''' (11):
A happy accident: a novel turfgrass reference genome. Description: Phillips, Alyssa R, et al. A happy accident: a novel turfgrass reference genome. ''G3 (Bethesda)''. 2023 Jun 1; '''13''' (6):
A highly contiguous genome assembly reveals sources of genomic novelty in the symbiotic fungus Rhizophagus irregularis. Description: Manley, Bethan F, et al. A highly contiguous genome assembly reveals sources of genomic novelty in the symbiotic fungus Rhizophagus irregularis. ''G3 (Bethesda)''. 2023 Jun 1; '''13''' (6):
A high-quality, long-read genome assembly of the whitelined sphinx moth (Lepidoptera: Sphingidae: Hyles lineata) shows highly conserved melanin synthesis pathway genes. Description: Godfrey, R Keating, et al. A high-quality, long-read genome assembly of the whitelined sphinx moth (Lepidoptera: Sphingidae: Hyles lineata) shows highly conserved melanin synthesis pathway genes. ''G3 (Bethesda)''. 2023 Jun 1; '''13''' (6):
Ancient gene linkages support ctenophores as sister to other animals. Description: Schultz, Darrin T, et al. Ancient gene linkages support ctenophores as sister to other animals. ''Nature''. 2023 Jun; '''618''' (7963):110-117
A panoramic view of the genomic landscape of the genus Streptomyces. Description: Nikolaidis, Marios, et al. A panoramic view of the genomic landscape of the genus Streptomyces. ''Microb Genom''. 2023 Jun; '''9''' (6):
Chromosome-level genome assembly of Lilford's wall lizard, Podarcis lilfordi (Gunther, 1874) from the Balearic Islands (Spain). Description: Gomez-Garrido, Jessica, et al. Chromosome-level genome assembly of Lilford's wall lizard, Podarcis lilfordi (Gunther, 1874) from the Balearic Islands (Spain). ''DNA Res''. 2023 Jun 1; '''30''' (3):
Complete Genome Analysis of Subtercola sp. PAMC28395: Genomic Insights into Its Potential Role for Cold Adaptation and Biotechnological Applications. Description: Yamada, Ryoichi, et al. Complete Genome Analysis of Subtercola sp. PAMC28395: Genomic Insights into Its Potential Role for Cold Adaptation and Biotechnological Applications. ''Microorganisms''. 2023 Jun 1; '''11''' (6):
Current trends in RNA virus detection through metatranscriptome sequencing data. Description: Nakagawa, So, et al. Current trends in RNA virus detection through metatranscriptome sequencing data. ''FEBS Open Bio''. 2023 Jun; '''13''' (6):992-1000
Divergent RNA viruses infecting sea lice, major ectoparasites of fish. Description: Chang, Tianyi, et al. Divergent RNA viruses infecting sea lice, major ectoparasites of fish. ''PLoS Pathog''. 2023 Jun; '''19''' (6):e1011386
Endogenous viral elements reveal associations between a non-retroviral RNA virus and symbiotic dinoflagellate genomes. Description: Veglia, Alex J, et al. Endogenous viral elements reveal associations between a non-retroviral RNA virus and symbiotic dinoflagellate genomes. ''Commun Biol''. 2023 Jun 1; '''6''' (1):566
Epiphytic common core bacteria in the microbiomes of co-located green (Ulva), brown (Saccharina) and red (Grateloupia, Gelidium) macroalgae. Description: Lu, De-Chen, et al. Epiphytic common core bacteria in the microbiomes of co-located green (Ulva), brown (Saccharina) and red (Grateloupia, Gelidium) macroalgae. ''Microbiome''. 2023 Jun 1; '''11''' (1):126
Genetic analysis of a phenotypic loss in the mechanosensory entrainment of a circalunar clock. Description: Brisevac, Dusica, et al. Genetic analysis of a phenotypic loss in the mechanosensory entrainment of a circalunar clock. ''PLoS Genet''. 2023 Jun; '''19''' (6):e1010763
Genomic insights into the coupling of a Chlorella-like microeukaryote and sulfur bacteria in the chemocline of permanently stratified Lake Cadagno. Description: Saini, Jaspreet S, et al. Genomic insights into the coupling of a Chlorella-like microeukaryote and sulfur bacteria in the chemocline of permanently stratified Lake Cadagno. ''ISME J''. 2023 Jun; '''17''' (6):903-915
Mesophilic and thermophilic viruses are associated with nutrient cycling during hyperthermophilic composting. Description: Liao, Hanpeng, et al. Mesophilic and thermophilic viruses are associated with nutrient cycling during hyperthermophilic composting. ''ISME J''. 2023 Jun; '''17''' (6):916-930
Metagenome Investigation of Ocular Microbiota of Cataract Patients With and Without Type 2 Diabetes. Description: Shao, Zheng, et al. Metagenome Investigation of Ocular Microbiota of Cataract Patients With and Without Type 2 Diabetes. ''Transl Vis Sci Technol''. 2023 Jun 1; '''12''' (6):1
Metagenomics-metabolomics analysis of microbial function and metabolism in petroleum-contaminated soil. Description: Li, Yong-Quan, et al. Metagenomics-metabolomics analysis of microbial function and metabolism in petroleum-contaminated soil. ''Braz J Microbiol''. 2023 Jun; '''54''' (2):935-947
Novel and Engineered Type II CRISPR Systems from Uncultivated Microbes with Broad Genome Editing Capability. Description: Alexander, Lisa M, et al. Novel and Engineered Type II CRISPR Systems from Uncultivated Microbes with Broad Genome Editing Capability. ''CRISPR J''. 2023 Jun; '''6''' (3):261-277
Optimization and evaluation of viral metagenomic amplification and sequencing procedures toward a genome-level resolution of the human fecal DNA virome. Description: Wang, Guangyang, et al. Optimization and evaluation of viral metagenomic amplification and sequencing procedures toward a genome-level resolution of the human fecal DNA virome. ''J Adv Res''. 2023 Jun; '''48''': 75-86
PacBio Hi-Fi genome assembly of the Iberian dolphin freshwater mussel Unio delphinus Spengler, 1793. Description: Gomes-Dos-Santos, Andre, et al. PacBio Hi-Fi genome assembly of the Iberian dolphin freshwater mussel Unio delphinus Spengler, 1793. ''Sci Data''. 2023 Jun 1; '''10''' (1):340
Pervasive tandem duplications and convergent evolution shape coral genomes. Description: Noel, Benjamin, et al. Pervasive tandem duplications and convergent evolution shape coral genomes. ''Genome Biol''. 2023 Jun 1; '''24''' (1):123
Radial spoke protein 9 is necessary for axoneme assembly in Plasmodium but not in trypanosomatid parasites. Description: Ramakrishnan, Chandra, et al. Radial spoke protein 9 is necessary for axoneme assembly in Plasmodium but not in trypanosomatid parasites. ''J Cell Sci''. 2023 Jun 1; '''136''' (11):
Replicated life-history patterns and subsurface origins of the bacterial sister phyla Nitrospirota and Nitrospinota. Description: D'Angelo, Timothy, et al. Replicated life-history patterns and subsurface origins of the bacterial sister phyla Nitrospirota and Nitrospinota. ''ISME J''. 2023 Jun; '''17''' (6):891-902
Whole genome assemblies of Zophobas morio and Tenebrio molitor. Description: Kaur, Sabhjeet, et al. Whole genome assemblies of Zophobas morio and Tenebrio molitor. ''G3 (Bethesda)''. 2023 Jun 1; '''13''' (6):
Dissecting the impact of dietary fiber type on atherosclerosis in mice colonized with different gut microbial communities. Description: Hutchison, Evan R, et al. Dissecting the impact of dietary fiber type on atherosclerosis in mice colonized with different gut microbial communities. ''NPJ Biofilms Microbiomes''. 2023 Jun 3; '''9''' (1):31
Metabolic capabilities are highly conserved among human nasal-associated Corynebacterium species in pangenomic analyses. Description: Tran, Tommy H, et al. Metabolic capabilities are highly conserved among human nasal-associated Corynebacterium species in pangenomic analyses. ''bioRxiv''. 2023 Jun 5;
Divergent functions of two clades of flavodoxin in diatoms mitigate oxidative stress and iron limitation. Description: Graff van Creveld, Shiri, et al. Divergent functions of two clades of flavodoxin in diatoms mitigate oxidative stress and iron limitation. ''Elife''. 2023 Jun 6; '''12''':
Defining Microbial Community Functions in Chronic Human Infection with Metatranscriptomics. Description: Adekoya, Aanuoluwa E, et al. Defining Microbial Community Functions in Chronic Human Infection with Metatranscriptomics. ''bioRxiv''. 2023 Jun 7;
Multi-omics analysis reveals changes in tryptophan and cholesterol metabolism before and after sexual maturation in captive macaques. Description: Liu, Xu, et al. Multi-omics analysis reveals changes in tryptophan and cholesterol metabolism before and after sexual maturation in captive macaques. ''BMC Genomics''. 2023 Jun 7; '''24''' (1):308
Origin of minicircular mitochondrial genomes in red algae. Description: Lee, Yongsung, et al. Origin of minicircular mitochondrial genomes in red algae. ''Nat Commun''. 2023 Jun 8; '''14''' (1):3363
Grapevine Endophyte Endornavirus and Two New Endornaviruses Found Associated with Grapevines (Vitis vinifera L.) in Idaho, USA. Description: Dahan, Jennifer, et al. Grapevine Endophyte Endornavirus and Two New Endornaviruses Found Associated with Grapevines (Vitis vinifera L.) in Idaho, USA. ''Viruses''. 2023 Jun 10; '''15''' (6):
Revealing proteome-level functional redundancy in the human gut microbiome using ultra-deep metaproteomics. Description: Li, Leyuan, et al. Revealing proteome-level functional redundancy in the human gut microbiome using ultra-deep metaproteomics. ''Nat Commun''. 2023 Jun 10; '''14''' (1):3428
SIMMER employs similarity algorithms to accurately identify human gut microbiome species and enzymes capable of known chemical transformations. Description: Bustion, Annamarie E, et al. SIMMER employs similarity algorithms to accurately identify human gut microbiome species and enzymes capable of known chemical transformations. ''Elife''. 2023 Jun 12; '''12''':
A draft genome assembly of reef-building octocoral Heliopora coerulea. Description: Ip, Jack Chi-Ho, et al. A draft genome assembly of reef-building octocoral Heliopora coerulea. ''Sci Data''. 2023 Jun 14; '''10''' (1):381
Future ocean conditions induce necrosis, microbial dysbiosis and nutrient cycling imbalance in the reef sponge Stylissa flabelliformis. Description: Botte, Emmanuelle S, et al. Future ocean conditions induce necrosis, microbial dysbiosis and nutrient cycling imbalance in the reef sponge Stylissa flabelliformis. ''ISME Commun''. 2023 Jun 14; '''3''' (1):53
Mn(2+) Luminescence in Ca(9)Zn(1-x)Mn(x)Na(PO(4))(7) Solid Solution, 0 Description: Gallyamov, Eldar M, et al. Mn(2+) Luminescence in Ca(9)Zn(1-x)Mn(x)Na(PO(4))(7) Solid Solution, 0
A Diverse Virome Is Identified in Parasitic Flatworms of Domestic Animals in Xinjiang, China. Description: Zhang, Peng, et al. A Diverse Virome Is Identified in Parasitic Flatworms of Domestic Animals in Xinjiang, China. ''Microbiol Spectr''. 2023 Jun 15; '''11''' (3):e0070223
Bacterioplankton Communities in Dissolved Organic Carbon-Rich Amazonian Black Water. Description: Sylvain, Francois-Etienne, et al. Bacterioplankton Communities in Dissolved Organic Carbon-Rich Amazonian Black Water. ''Microbiol Spectr''. 2023 Jun 15; '''11''' (3):e0479322
Comparative Functional Genome Analysis Reveals the Habitat Adaptation and Biocontrol Characteristics of Plant Growth-Promoting Bacteria in NCBI Databases. Description: Wang, Zhen, et al. Comparative Functional Genome Analysis Reveals the Habitat Adaptation and Biocontrol Characteristics of Plant Growth-Promoting Bacteria in NCBI Databases. ''Microbiol Spectr''. 2023 Jun 15; '''11''' (3):e0500722
Comparative Genomics and Physiological Investigations Supported Multifaceted Plant Growth-Promoting Activities in Two Hypericum perforatum L.-Associated Plant Growth-Promoting Rhizobacteria for Microbe-Assisted Cultivation. Description: Raj, Yog, et al. Comparative Genomics and Physiological Investigations Supported Multifaceted Plant Growth-Promoting Activities in Two Hypericum perforatum L.-Associated Plant Growth-Promoting Rhizobacteria for Microbe-Assisted Cultivation. ''Microbiol Spectr''. 2023 Jun 15; '''11''' (3):e0060723
Gene expression dynamics of natural assemblages of heterotrophic flagellates during bacterivory. Description: Obiol, Aleix, et al. Gene expression dynamics of natural assemblages of heterotrophic flagellates during bacterivory. ''Microbiome''. 2023 Jun 15; '''11''' (1):134
Plasmer: an Accurate and Sensitive Bacterial Plasmid Prediction Tool Based on Machine Learning of Shared k-mers and Genomic Features. Description: Zhu, Qianhui, et al. Plasmer: an Accurate and Sensitive Bacterial Plasmid Prediction Tool Based on Machine Learning of Shared k-mers and Genomic Features. ''Microbiol Spectr''. 2023 Jun 15; '''11''' (3):e0464522
Prevalence of Reversed Genome Organizations for Viruses in the Family Iflaviridae, Order Picornavirales. Description: Zhang, Yan, et al. Prevalence of Reversed Genome Organizations for Viruses in the Family Iflaviridae, Order Picornavirales. ''Microbiol Spectr''. 2023 Jun 15; '''11''' (3):e0473822
Viromics Reveals the High Diversity of Viruses from Fishes of the Tibet Highland. Description: Xi, Yuan, et al. Viromics Reveals the High Diversity of Viruses from Fishes of the Tibet Highland. ''Microbiol Spectr''. 2023 Jun 15; '''11''' (3):e0094623
Distinct taxonomic and functional profiles of high Arctic and alpine permafrost-affected soil microbiomes. Description: Sannino, Ciro, et al. Distinct taxonomic and functional profiles of high Arctic and alpine permafrost-affected soil microbiomes. ''Environ Microbiome''. 2023 Jun 16; '''18''' (1):54
A chromosome-level genome assembly of tomato pinworm, Tuta absoluta. Description: Liu, Ying, et al. A chromosome-level genome assembly of tomato pinworm, Tuta absoluta. ''Sci Data''. 2023 Jun 17; '''10''' (1):390
CRISPR arrays as high-resolution markers to track microbial transmission during influenza infection. Description: Zhang, Lingdi, et al. CRISPR arrays as high-resolution markers to track microbial transmission during influenza infection. ''Microbiome''. 2023 Jun 17; '''11''' (1):136
Metagenomic Sequencing to Analyze Composition and Function of Top-Gray Chalky Grain Microorganisms from Hybrid Rice Seeds. Description: Liu, You, et al. Metagenomic Sequencing to Analyze Composition and Function of Top-Gray Chalky Grain Microorganisms from Hybrid Rice Seeds. ''Plants (Basel)''. 2023 Jun 18; '''12''' (12):
Riluzole, a Derivative of Benzothiazole as a Potential Anti-Amoebic Agent against Entamoeba histolytica. Description: Velasquez-Torres, Maritza, et al. Riluzole, a Derivative of Benzothiazole as a Potential Anti-Amoebic Agent against Entamoeba histolytica. ''Pharmaceuticals (Basel)''. 2023 Jun 19; '''16''' (6):
The chromosome-scale genome assembly of cluster bean provides molecular insight into edible gum (galactomannan) biosynthesis family genes. Description: Gaikwad, Kishor, et al. The chromosome-scale genome assembly of cluster bean provides molecular insight into edible gum (galactomannan) biosynthesis family genes. ''Sci Rep''. 2023 Jun 19; '''13''' (1):9941
The Importance of Entomo-Virological Investigation of Yellow Fever Virus to Strengthen Surveillance in Brazil. Description: Cruz, Ana Cecilia Ribeiro, et al. The Importance of Entomo-Virological Investigation of Yellow Fever Virus to Strengthen Surveillance in Brazil. ''Trop Med Infect Dis''. 2023 Jun 20; '''8''' (6):
Characterization of the Human Blood Virome in Iranian Multiple Transfused Patients. Description: Thijssen, Marijn, et al. Characterization of the Human Blood Virome in Iranian Multiple Transfused Patients. ''Viruses''. 2023 Jun 23; '''15''' (7):
Integrated genomic and functional analyses of human skin-associated Staphylococcus reveals extensive inter- and intra-species diversity. Description: Joglekar, Payal, et al. Integrated genomic and functional analyses of human skin-associated Staphylococcus reveals extensive inter- and intra-species diversity. ''bioRxiv''. 2023 Jun 23;
Chromosome-level assemblies of cultivated water chestnut Trapa bicornis and its wild relative Trapa incisa. Description: Qu, Minghao, et al. Chromosome-level assemblies of cultivated water chestnut Trapa bicornis and its wild relative Trapa incisa. ''Sci Data''. 2023 Jun 24; '''10''' (1):407
Expansion of Armatimonadota through marine sediment sequencing describes two classes with unique ecological roles. Description: Carlton, John D, et al. Expansion of Armatimonadota through marine sediment sequencing describes two classes with unique ecological roles. ''ISME Commun''. 2023 Jun 24; '''3''' (1):64
The facilitating role of phycospheric heterotrophic bacteria in cyanobacterial phosphonate availability and Microcystis bloom maintenance. Description: Zhao, Liang, et al. The facilitating role of phycospheric heterotrophic bacteria in cyanobacterial phosphonate availability and Microcystis bloom maintenance. ''Microbiome''. 2023 Jun 26; '''11''' (1):142
Metagenomic Analyses Reveal the Influence of Depth Layers on Marine Biodiversity on Tropical and Subtropical Regions. Description: Santiago, Bianca C F, et al. Metagenomic Analyses Reveal the Influence of Depth Layers on Marine Biodiversity on Tropical and Subtropical Regions. ''Microorganisms''. 2023 Jun 27; '''11''' (7):
Age-related alterations in metabolome and microbiome provide insights in dietary transition in giant pandas. Description: Liu, Fangyuan, et al. Age-related alterations in metabolome and microbiome provide insights in dietary transition in giant pandas. ''mSystems''. 2023 Jun 29; '''8''' (3):e0025223
An insight into the functional genomics and species classification of Eudiplozoon nipponicum (Monogenea, Diplozoidae), a haematophagous parasite of the common carp Cyprinus carpio. Description: Vorel, Jiri, et al. An insight into the functional genomics and species classification of Eudiplozoon nipponicum (Monogenea, Diplozoidae), a haematophagous parasite of the common carp Cyprinus carpio. ''BMC Genomics''. 2023 Jun 29; '''24''' (1):363
Flotillin-associated rhodopsin (FArhodopsin), a widespread paralog of proteorhodopsin in aquatic bacteria with streamlined genomes. Description: Haro-Moreno, Jose M, et al. Flotillin-associated rhodopsin (FArhodopsin), a widespread paralog of proteorhodopsin in aquatic bacteria with streamlined genomes. ''mSystems''. 2023 Jun 29; '''8''' (3):e0000823
Metaproteomics reveals functional partitioning and vegetational variation among permafrost-affected Arctic soil bacterial communities. Description: Miller, Samuel E, et al. Metaproteomics reveals functional partitioning and vegetational variation among permafrost-affected Arctic soil bacterial communities. ''mSystems''. 2023 Jun 29; '''8''' (3):e0123822
Metatranscriptomic analysis uncovers prevalent viral ORFs compatible with mitochondrial translation. Description: Begeman, Adam, et al. Metatranscriptomic analysis uncovers prevalent viral ORFs compatible with mitochondrial translation. ''mSystems''. 2023 Jun 29; '''8''' (3):e0100222
Parallel and convergent genomic changes underlie independent subterranean colonization across beetles. Description: Balart-Garcia, Pau, et al. Parallel and convergent genomic changes underlie independent subterranean colonization across beetles. ''Nat Commun''. 2023 Jun 29; '''14''' (1):3842
The evolutionary history of hepaciviruses. Description: Li, Y Q, et al. The evolutionary history of hepaciviruses. ''bioRxiv''. 2023 Jun 30;
Analysing the dynamics of the bacterial community in pozol, a Mexican fermented corn dough. Description: Lopez-Sanchez, Rafael, et al. Analysing the dynamics of the bacterial community in pozol, a Mexican fermented corn dough. ''Microbiology (Reading)''. 2023 Jul; '''169''' (7):
Benzo[a]pyrene stress impacts adaptive strategies and ecological functions of earthworm intestinal viromes. Description: Xia, Rong, et al. Benzo[a]pyrene stress impacts adaptive strategies and ecological functions of earthworm intestinal viromes. ''ISME J''. 2023 Jul; '''17''' (7):1004-1014
Disease-associated gut microbiome and critical metabolomic alterations in patients with colorectal cancer. Description: Zhang, Hongze, et al. Disease-associated gut microbiome and critical metabolomic alterations in patients with colorectal cancer. ''Cancer Med''. 2023 Jul; '''12''' (14):15720-15735
GOgetter: A pipeline for summarizing and visualizing GO slim annotations for plant genetic data. Description: Sessa, Emily B, et al. GOgetter: A pipeline for summarizing and visualizing GO slim annotations for plant genetic data. ''Appl Plant Sci''. 2023 Jul-Aug; '''11''' (4):e11536
Hot spring distribution and survival mechanisms of thermophilic comammox Nitrospira. Description: Zhang, Yan, et al. Hot spring distribution and survival mechanisms of thermophilic comammox Nitrospira. ''ISME J''. 2023 Jul; '''17''' (7):993-1003
Marine phytoplankton downregulate core photosynthesis and carbon storage genes upon rapid mixed layer shallowing. Description: Diaz, Ben P, et al. Marine phytoplankton downregulate core photosynthesis and carbon storage genes upon rapid mixed layer shallowing. ''ISME J''. 2023 Jul; '''17''' (7):1074-1088
Metabolic influence of core ciliates within the rumen microbiome. Description: Andersen, Thea O, et al. Metabolic influence of core ciliates within the rumen microbiome. ''ISME J''. 2023 Jul; '''17''' (7):1128-1140
The gut microbiome and resistome of conventionally vs. pasture-raised pigs. Description: Holman, Devin B, et al. The gut microbiome and resistome of conventionally vs. pasture-raised pigs. ''Microb Genom''. 2023 Jul; '''9''' (7):
A PacBio Hi-Fi Genome Assembly of the Painter's Mussel Unio pictorum (Linnaeus, 1758). Description: Gomes-Dos-Santos, Andre, et al. A PacBio Hi-Fi Genome Assembly of the Painter's Mussel Unio pictorum (Linnaeus, 1758). ''Genome Biol Evol''. 2023 Jul 3; '''15''' (7):
Evolutionary origin, population diversity, and diagnostics for a cryptic hybrid pathogen. Description: Steenwyk, Jacob L, et al. Evolutionary origin, population diversity, and diagnostics for a cryptic hybrid pathogen. ''bioRxiv''. 2023 Jul 3;
CRISPRimmunity: an interactive web server for CRISPR-associated Important Molecular events and Modulators Used in geNome edIting Tool identifYing. Description: Zhou, Fengxia, et al. CRISPRimmunity: an interactive web server for CRISPR-associated Important Molecular events and Modulators Used in geNome edIting Tool identifYing. ''Nucleic Acids Res''. 2023 Jul 5; '''51''' (W1):W93-W107
CrusTome: a transcriptome database resource for large-scale analyses across Crustacea. Description: Perez-Moreno, Jorge L, et al. CrusTome: a transcriptome database resource for large-scale analyses across Crustacea. ''G3 (Bethesda)''. 2023 Jul 5; '''13''' (7):
Whole-genome Duplications and the Long-term Evolution of Gene Regulatory Networks in Angiosperms. Description: Almeida-Silva, Fabricio, et al. Whole-genome Duplications and the Long-term Evolution of Gene Regulatory Networks in Angiosperms. ''Mol Biol Evol''. 2023 Jul 5; '''40''' (7):
BacSeq: A User-Friendly Automated Pipeline for Whole-Genome Sequence Analysis of Bacterial Genomes. Description: Chukamnerd, Arnon, et al. BacSeq: A User-Friendly Automated Pipeline for Whole-Genome Sequence Analysis of Bacterial Genomes. ''Microorganisms''. 2023 Jul 6; '''11''' (7):
TET2 and TET3 loss disrupts small intestine differentiation and homeostasis. Description: Ansari, Ihab, et al. TET2 and TET3 loss disrupts small intestine differentiation and homeostasis. ''Nat Commun''. 2023 Jul 6; '''14''' (1):4005
Genome analysis of Parmales, the sister group of diatoms, reveals the evolutionary specialization of diatoms from phago-mixotrophs to photoautotrophs. Description: Ban, Hiroki, et al. Genome analysis of Parmales, the sister group of diatoms, reveals the evolutionary specialization of diatoms from phago-mixotrophs to photoautotrophs. ''Commun Biol''. 2023 Jul 7; '''6''' (1):697
A catalog of microbial genes and metagenome-assembled genomes from the quail gut microbiome. Description: Xiong, Xinwei, et al. A catalog of microbial genes and metagenome-assembled genomes from the quail gut microbiome. ''Poult Sci''. 2023 Jul 9; '''102''' (10):102931
Four Novel Caudoviricetes Bacteriophages Isolated from Baltic Sea Water Infect Colonizers of Aurelia aurita. Description: Stante, Melissa, et al. Four Novel Caudoviricetes Bacteriophages Isolated from Baltic Sea Water Infect Colonizers of Aurelia aurita. ''Viruses''. 2023 Jul 9; '''15''' (7):
Comparative genomics reveals the diversification of triterpenoid biosynthesis and origin of ocotillol-type triterpenes in Panax. Description: Yang, Zijiang, et al. Comparative genomics reveals the diversification of triterpenoid biosynthesis and origin of ocotillol-type triterpenes in Panax. ''Plant Commun''. 2023 Jul 10; '''4''' (4):100591
Individual bat virome analysis reveals co-infection and spillover among bats and virus zoonotic potential. Description: Wang, Jing, et al. Individual bat virome analysis reveals co-infection and spillover among bats and virus zoonotic potential. ''Nat Commun''. 2023 Jul 10; '''14''' (1):4079
Nuclear phylogeny and insights into whole-genome duplications and reproductive development of Solanaceae plants. Description: Huang, Jie, et al. Nuclear phylogeny and insights into whole-genome duplications and reproductive development of Solanaceae plants. ''Plant Commun''. 2023 Jul 10; '''4''' (4):100595
Roving methyltransferases generate a mosaic epigenetic landscape and influence evolution in Bacteroides fragilis group. Description: Tisza, Michael J, et al. Roving methyltransferases generate a mosaic epigenetic landscape and influence evolution in Bacteroides fragilis group. ''Nat Commun''. 2023 Jul 10; '''14''' (1):4082
The genome of the glasshouse plant noble rhubarb (Rheum nobile) provides a window into alpine adaptation. Description: Feng, Tao, et al. The genome of the glasshouse plant noble rhubarb (Rheum nobile) provides a window into alpine adaptation. ''Commun Biol''. 2023 Jul 10; '''6''' (1):706
Secretome Analysis for a New Strain of the Blackleg Fungus Plenodomus lingam Reveals Candidate Proteins for Effectors and Virulence Factors. Description: Bouqellah, Nahla A, et al. Secretome Analysis for a New Strain of the Blackleg Fungus Plenodomus lingam Reveals Candidate Proteins for Effectors and Virulence Factors. ''J Fungi (Basel)''. 2023 Jul 11; '''9''' (7):
Midgut transcriptomic responses to dengue and chikungunya viruses in the vectors Aedes albopictus and Aedes malayensis. Description: Modahl, Cassandra M, et al. Midgut transcriptomic responses to dengue and chikungunya viruses in the vectors Aedes albopictus and Aedes malayensis. ''Sci Rep''. 2023 Jul 12; '''13''' (1):11271
Crosstalk between Breast Milk N-Acetylneuraminic Acid and Infant Growth in a Gut Microbiota-Dependent Manner. Description: Ouyang, Runze, et al. Crosstalk between Breast Milk N-Acetylneuraminic Acid and Infant Growth in a Gut Microbiota-Dependent Manner. ''Metabolites''. 2023 Jul 13; '''13''' (7):
Hybridisation has shaped a recent radiation of grass-feeding aphids. Description: Mathers, Thomas C, et al. Hybridisation has shaped a recent radiation of grass-feeding aphids. ''BMC Biol''. 2023 Jul 13; '''21''' (1):157
Multivalent interactions of the disordered regions of XLF and XRCC4 foster robust cellular NHEJ and drive the formation of ligation-boosting condensates in vitro. Description: Vu, Duc-Duy, et al. Multivalent interactions of the disordered regions of XLF and XRCC4 foster robust cellular NHEJ and drive the formation of ligation-boosting condensates in vitro. ''bioRxiv''. 2023 Jul 13;
Distribution and Activity of Sulfur-Metabolizing Bacteria along the Temperature Gradient in Phototrophic Mats of the Chilean Hot Spring Porcelana. Description: Konrad, Ricardo, et al. Distribution and Activity of Sulfur-Metabolizing Bacteria along the Temperature Gradient in Phototrophic Mats of the Chilean Hot Spring Porcelana. ''Microorganisms''. 2023 Jul 14; '''11''' (7):
Gold-Based Coronands as Hosts for M(3+) Metal Ions: Ring Size Matters. Description: Sucena, Suelen Ferreira, et al. Gold-Based Coronands as Hosts for M(3+) Metal Ions: Ring Size Matters. ''Molecules''. 2023 Jul 14; '''28''' (14):
Ablation of the gut microbiota alleviates high-methionine diet-induced hyperhomocysteinemia and glucose intolerance in mice. Description: Li, Wenqiang, et al. Ablation of the gut microbiota alleviates high-methionine diet-induced hyperhomocysteinemia and glucose intolerance in mice. ''NPJ Sci Food''. 2023 Jul 17; '''7''' (1):36
Lampshade web spider Ectatosticta davidi chromosome-level genome assembly provides evidence for its phylogenetic position. Description: Fan, Zheng, et al. Lampshade web spider Ectatosticta davidi chromosome-level genome assembly provides evidence for its phylogenetic position. ''Commun Biol''. 2023 Jul 18; '''6''' (1):748
Novel Synergies and Isolate Specificities in the Drug Interaction Landscape of Mycobacterium abscessus. Description: Van, Nhi, et al. Novel Synergies and Isolate Specificities in the Drug Interaction Landscape of Mycobacterium abscessus. ''Antimicrob Agents Chemother''. 2023 Jul 18; '''67''' (7):e0009023
Salicylic acid metabolism and signalling coordinate senescence initiation in aspen in nature. Description: Lihavainen, Jenna, et al. Salicylic acid metabolism and signalling coordinate senescence initiation in aspen in nature. ''Nat Commun''. 2023 Jul 18; '''14''' (1):4288
The first cavefish in the Dinaric Karst? Cave colonization made possible by phenotypic plasticity in Telestes karsticus. Description: Cupic, Mateo, et al. The first cavefish in the Dinaric Karst? Cave colonization made possible by phenotypic plasticity in Telestes karsticus. ''Zool Res''. 2023 Jul 18; '''44''' (4):821-833
Improved Gas Sensing Capabilities of MoS(2)/Diamond Heterostructures at Room Temperature. Description: Koci, Michal, et al. Improved Gas Sensing Capabilities of MoS(2)/Diamond Heterostructures at Room Temperature. ''ACS Appl Mater Interfaces''. 2023 Jul 19; '''15''' (28):34206-34214
Inferring and comparing metabolism across heterogeneous sets of annotated genomes using AuCoMe. Description: Belcour, Arnaud, et al. Inferring and comparing metabolism across heterogeneous sets of annotated genomes using AuCoMe. ''Genome Res''. 2023 Jul 19; '''33''' (6):972-87
Effects of Candidatus Liberibacter asiaticus infection on metagenome of Diaphorina citri gut endosymbiont. Description: Pan, Qi, et al. Effects of Candidatus Liberibacter asiaticus infection on metagenome of Diaphorina citri gut endosymbiont. ''Sci Data''. 2023 Jul 21; '''10''' (1):478
A Symbiotic Fungus Sistotrema Benefits Blueberry Rejuvenation and Abiotic Stress Tolerance. Description: Ye, Yu, et al. A Symbiotic Fungus Sistotrema Benefits Blueberry Rejuvenation and Abiotic Stress Tolerance. ''J Fungi (Basel)''. 2023 Jul 24; '''9''' (7):
Microbial Communities in Ferromanganese Sediments from the Northern Basin of Lake Baikal (Russia). Description: Lomakina, Anna, et al. Microbial Communities in Ferromanganese Sediments from the Northern Basin of Lake Baikal (Russia). ''Microorganisms''. 2023 Jul 24; '''11''' (7):
Tapping the rhizosphere metabolites for the prebiotic control of soil-borne bacterial wilt disease. Description: Wen, Tao, et al. Tapping the rhizosphere metabolites for the prebiotic control of soil-borne bacterial wilt disease. ''Nat Commun''. 2023 Jul 26; '''14''' (1):4497
Comparative Genomic Analysis and BTEX Degradation Pathways of a Thermotolerant Cupriavidus cauae PHS1. Description: Sathesh-Prabu, Chandran, et al. Comparative Genomic Analysis and BTEX Degradation Pathways of a Thermotolerant Cupriavidus cauae PHS1. ''J Microbiol Biotechnol''. 2023 Jul 28; '''33''' (7):875-885
The role and risks of selective adaptation in extreme coral habitats. Description: Scucchia, Federica, et al. The role and risks of selective adaptation in extreme coral habitats. ''Nat Commun''. 2023 Jul 28; '''14''' (1):4475
Bioinformatic Surveillance Leads to Discovery of Two Novel Putative Bunyaviruses Associated with Black Soldier Fly. Description: Walt, Hunter K, et al. Bioinformatic Surveillance Leads to Discovery of Two Novel Putative Bunyaviruses Associated with Black Soldier Fly. ''Viruses''. 2023 Jul 29; '''15''' (8):
Antimony efflux underpins phosphorus cycling and resistance of phosphate-solubilizing bacteria in mining soils. Description: Liu, Shengwei, et al. Antimony efflux underpins phosphorus cycling and resistance of phosphate-solubilizing bacteria in mining soils. ''ISME J''. 2023 Aug; '''17''' (8):1278-1289
Chromosome-Scale Genome Assembly of the Solitary Parasitoid Wasp Microplitis manilae Ashmead, 1904 (Braconidae: Microgastrinae). Description: Yan, Bin, et al. Chromosome-Scale Genome Assembly of the Solitary Parasitoid Wasp Microplitis manilae Ashmead, 1904 (Braconidae: Microgastrinae). ''Genome Biol Evol''. 2023 Aug 1; '''15''' (8):
Enrichment and characterization of a nitric oxide-reducing microbial community in a continuous bioreactor. Description: Garrido-Amador, Paloma, et al. Enrichment and characterization of a nitric oxide-reducing microbial community in a continuous bioreactor. ''Nat Microbiol''. 2023 Aug; '''8''' (8):1574-1586
Evaluating the relationship between community water and sanitation access and the global burden of antibiotic resistance: an ecological study. Description: Fuhrmeister, Erica R, et al. Evaluating the relationship between community water and sanitation access and the global burden of antibiotic resistance: an ecological study. ''Lancet Microbe''. 2023 Aug; '''4''' (8):e591-e600
Genomic Resequencing Unravels the Genetic Basis of Domestication, Expansion, and Trait Improvement in Morus Atropurpurea. Description: Dai, Fanwei, et al. Genomic Resequencing Unravels the Genetic Basis of Domestication, Expansion, and Trait Improvement in Morus Atropurpurea. ''Adv Sci (Weinh)''. 2023 Aug; '''10''' (24):e2300039
Insights into the Ecological Diversification of the Hymenochaetales based on Comparative Genomics and Phylogenomics With an Emphasis on Coltricia. Description: Zhao, Heng, et al. Insights into the Ecological Diversification of the Hymenochaetales based on Comparative Genomics and Phylogenomics With an Emphasis on Coltricia. ''Genome Biol Evol''. 2023 Aug 1; '''15''' (8):
Isolation and genome sequencing of cytomegaloviruses from Natal multimammate mice (Mastomys natalensis). Description: Hansen, Frederick, et al. Isolation and genome sequencing of cytomegaloviruses from Natal multimammate mice (Mastomys natalensis). ''J Gen Virol''. 2023 Aug; '''104''' (8):
Vibrio aestuarianus clade A and clade B isolates are associated with Pacific oyster (Magallana gigas) disease outbreaks across Ireland. Description: Coyle, Nicola M, et al. Vibrio aestuarianus clade A and clade B isolates are associated with Pacific oyster (Magallana gigas) disease outbreaks across Ireland. ''Microb Genom''. 2023 Aug; '''9''' (8):
Common antibiotics, azithromycin and amoxicillin, affect gut metagenomics within a household. Description: Chopyk, Jessica, et al. Common antibiotics, azithromycin and amoxicillin, affect gut metagenomics within a household. ''BMC Microbiol''. 2023 Aug 2; '''23''' (1):206
A syntelog-based pan-genome provides insights into rice domestication and de-domestication. Description: Wu, Dongya, et al. A syntelog-based pan-genome provides insights into rice domestication and de-domestication. ''Genome Biol''. 2023 Aug 3; '''24''' (1):179
DNA methylation signatures of duplicate gene evolution in angiosperms. Description: Kenchanmane Raju, Sunil K, et al. DNA methylation signatures of duplicate gene evolution in angiosperms. ''Plant Physiol''. 2023 Aug 3; '''192''' (4):2883-2901
Impact of the fungal pathogen Fusarium oxysporum on the taxonomic and functional diversity of the common bean root microbiome. Description: Mendes, Lucas William, et al. Impact of the fungal pathogen Fusarium oxysporum on the taxonomic and functional diversity of the common bean root microbiome. ''Environ Microbiome''. 2023 Aug 3; '''18''' (1):68
Interpenetration Phenomena via Anion Template Effects in Fe(II) and Co(II) Coordination Networks with a Bis-(1,2,4-triazole) Ligand. Description: Jordan, Dustin N, et al. Interpenetration Phenomena via Anion Template Effects in Fe(II) and Co(II) Coordination Networks with a Bis-(1,2,4-triazole) Ligand. ''Polymers (Basel)''. 2023 Aug 3; '''15''' (15):
The crosstalking immune cells network creates a collective function beyond the function of each cellular constituent during the progression of hepatocellular carcinoma. Description: Koelsch, Nicholas, et al. The crosstalking immune cells network creates a collective function beyond the function of each cellular constituent during the progression of hepatocellular carcinoma. ''Sci Rep''. 2023 Aug 3; '''13''' (1):12630
Third-Generation Sequencing Reveals the Adaptive Role of the Epigenome in Three Deep-Sea Polychaetes. Description: Perez, Maeva, et al. Third-Generation Sequencing Reveals the Adaptive Role of the Epigenome in Three Deep-Sea Polychaetes. ''Mol Biol Evol''. 2023 Aug 3; '''40''' (8):
Functional divergence of CYP76AKs shapes the chemodiversity of abietane-type diterpenoids in genus Salvia. Description: Hu, Jiadong, et al. Functional divergence of CYP76AKs shapes the chemodiversity of abietane-type diterpenoids in genus Salvia. ''Nat Commun''. 2023 Aug 4; '''14''' (1):4696
Metagenomics revealed a correlation of gut phageome with autism spectrum disorder. Description: Shahin, Khashayar, et al. Metagenomics revealed a correlation of gut phageome with autism spectrum disorder. ''Gut Pathog''. 2023 Aug 4; '''15''' (1):39
Presence and role of viruses in anaerobic digestion of food waste under environmental variability. Description: Fan, Lu, et al. Presence and role of viruses in anaerobic digestion of food waste under environmental variability. ''Microbiome''. 2023 Aug 4; '''11''' (1):170
metaSpectraST: an unsupervised and database-independent analysis workflow for metaproteomic MS/MS data using spectrum clustering. Description: Hao, Chunlin, et al. metaSpectraST: an unsupervised and database-independent analysis workflow for metaproteomic MS/MS data using spectrum clustering. ''Microbiome''. 2023 Aug 7; '''11''' (1):176
Rhenium(I) Tricarbonyl Complexes of 1,10-Phenanthroline Derivatives with Unexpectedly High Cytotoxicity. Description: Enslin, Lucy E, et al. Rhenium(I) Tricarbonyl Complexes of 1,10-Phenanthroline Derivatives with Unexpectedly High Cytotoxicity. ''Inorg Chem''. 2023 Aug 7; '''62''' (31):12237-12251
TRGdb: a universal resource for the exploration of taxonomically restricted genes in bacteria. Description: Zielezinski, Andrzej, et al. TRGdb: a universal resource for the exploration of taxonomically restricted genes in bacteria. ''Database (Oxford)''. 2023 Aug 8; '''2023''':
In host evolution of Exophiala dermatitidis in cystic fibrosis lung micro-environment. Description: Kurbessoian, Tania, et al. In host evolution of Exophiala dermatitidis in cystic fibrosis lung micro-environment. ''G3 (Bethesda)''. 2023 Aug 9; '''13''' (8):
Characterization of the pig lower respiratory tract antibiotic resistome. Description: Zhou, Yunyan, et al. Characterization of the pig lower respiratory tract antibiotic resistome. ''Nat Commun''. 2023 Aug 12; '''14''' (1):4868
The Microbiome and Antibiotic Resistome in Soil under Biodegradable Composite Carbon Source Amendment. Description: Yang, Zhongchen, et al. The Microbiome and Antibiotic Resistome in Soil under Biodegradable Composite Carbon Source Amendment. ''J Xenobiot''. 2023 Aug 15; '''13''' (3):424-438
The first chromosome-level genome assembly of Entomobrya proxima Folsom, 1924 (Collembola: Entomobryidae). Description: Jin, Jianfeng, et al. The first chromosome-level genome assembly of Entomobrya proxima Folsom, 1924 (Collembola: Entomobryidae). ''Sci Data''. 2023 Aug 16; '''10''' (1):541
Exploring the Core Bacteria and Functional Traits in Pecan (Carya illinoinensis) Rhizosphere. Description: Shi, Mengting, et al. Exploring the Core Bacteria and Functional Traits in Pecan (Carya illinoinensis) Rhizosphere. ''Microbiol Spectr''. 2023 Aug 17; '''11''' (4):e0011023
Identification of Gut Microbiome and Metabolites Associated with Acute Diarrhea in Cats. Description: Bai, Huasong, et al. Identification of Gut Microbiome and Metabolites Associated with Acute Diarrhea in Cats. ''Microbiol Spectr''. 2023 Aug 17; '''11''' (4):e0059023
Nelson Bay Reovirus Isolated from Bats and Blood-Sucking Arthropods Collected in Yunnan Province, China. Description: Kuang, Guopeng, et al. Nelson Bay Reovirus Isolated from Bats and Blood-Sucking Arthropods Collected in Yunnan Province, China. ''Microbiol Spectr''. 2023 Aug 17; '''11''' (4):e0512222
Short-Term Dietary Intervention with Whole Oats Protects from Antibiotic-Induced Dysbiosis. Description: Costa, Stephen K, et al. Short-Term Dietary Intervention with Whole Oats Protects from Antibiotic-Induced Dysbiosis. ''Microbiol Spectr''. 2023 Aug 17; '''11''' (4):e0237623
Terabase-Scale Coassembly of a Tropical Soil Microbiome. Description: Riley, Robert, et al. Terabase-Scale Coassembly of a Tropical Soil Microbiome. ''Microbiol Spectr''. 2023 Aug 17; '''11''' (4):e0020023
Tissue-specific transcriptomes reveal potential mechanisms of microbiome heterogeneity in an ancient fish. Description: Thorstensen, Matt J, et al. Tissue-specific transcriptomes reveal potential mechanisms of microbiome heterogeneity in an ancient fish. ''Database (Oxford)''. 2023 Aug 17; '''2023''':
CryptoCEN: A Co-Expression Network for Cryptococcus neoformans reveals novel proteins involved in DNA damage repair. Description: O'Meara, Matthew J, et al. CryptoCEN: A Co-Expression Network for Cryptococcus neoformans reveals novel proteins involved in DNA damage repair. ''bioRxiv''. 2023 Aug 18;
Expanding the genetic toolbox of Rhodotorula toruloides by identification and validation of six novel promoters induced or repressed under nitrogen starvation. Description: Brink, Daniel P, et al. Expanding the genetic toolbox of Rhodotorula toruloides by identification and validation of six novel promoters induced or repressed under nitrogen starvation. ''Microb Cell Fact''. 2023 Aug 19; '''22''' (1):160
Whole genome sequencing and the lignocellulose degradation potential of Bacillus subtilis RLI2019 isolated from the intestine of termites. Description: Liu, Gongwei, et al. Whole genome sequencing and the lignocellulose degradation potential of Bacillus subtilis RLI2019 isolated from the intestine of termites. ''Biotechnol Biofuels Bioprod''. 2023 Aug 19; '''16''' (1):130
Shining the spotlight on the neglected: new high-quality genome assemblies as a gateway to understanding the evolution of Trypanosomatidae. Description: Albanaz, Amanda T S, et al. Shining the spotlight on the neglected: new high-quality genome assemblies as a gateway to understanding the evolution of Trypanosomatidae. ''BMC Genomics''. 2023 Aug 21; '''24''' (1):471
Dengue Fever Surveillance in Mato Grosso do Sul: Insights from Genomic Analysis and Implications for Public Health Strategies. Description: Castilho de Arruda, Larissa Domingues, et al. Dengue Fever Surveillance in Mato Grosso do Sul: Insights from Genomic Analysis and Implications for Public Health Strategies. ''Viruses''. 2023 Aug 23; '''15''' (9):
Long-read assembled metagenomic approaches improve our understanding on metabolic potentials of microbial community in mangrove sediments. Description: Zhang, Zhi-Feng, et al. Long-read assembled metagenomic approaches improve our understanding on metabolic potentials of microbial community in mangrove sediments. ''Microbiome''. 2023 Aug 23; '''11''' (1):188
Fiber supplementation protects from antibiotic-induced gut microbiome dysbiosis by modulating gut redox potential. Description: Penumutchu, Swathi, et al. Fiber supplementation protects from antibiotic-induced gut microbiome dysbiosis by modulating gut redox potential. ''Nat Commun''. 2023 Aug 24; '''14''' (1):5161
Identification and characterization of a polyomavirus in the thornback skate (Raja clavata). Description: Abrantes, Joana, et al. Identification and characterization of a polyomavirus in the thornback skate (Raja clavata). ''Virol J''. 2023 Aug 24; '''20''' (1):190
Isolation and Optimization of Aflatoxin B(1) Degradation by Uniform Design and Complete Genome Sequencing of Novel Deep-Sea Kocuria rosea Strain 13. Description: Wang, Jingying, et al. Isolation and Optimization of Aflatoxin B(1) Degradation by Uniform Design and Complete Genome Sequencing of Novel Deep-Sea Kocuria rosea Strain 13. ''Toxins (Basel)''. 2023 Aug 24; '''15''' (9):
Improving diagnosis of non-malarial fevers in Senegal: Borrelia and the contribution of tick-borne bacteria. Description: Levine, Zoe C, et al. Improving diagnosis of non-malarial fevers in Senegal: Borrelia and the contribution of tick-borne bacteria. ''medRxiv''. 2023 Aug 25;
Microbial communities related to the sulfur cycle in the Sansha Yongle Blue Hole. Description: Sun, Kai, et al. Microbial communities related to the sulfur cycle in the Sansha Yongle Blue Hole. ''Microbiol Spectr''. 2023 Aug 25; '''11''' (5):e0114923
PLASMe: a tool to identify PLASMid contigs from short-read assemblies using transformer. Description: Tang, Xubo, et al. PLASMe: a tool to identify PLASMid contigs from short-read assemblies using transformer. ''Nucleic Acids Res''. 2023 Aug 25; '''51''' (15):e83
Single-worm long-read sequencing reveals genome diversity in free-living nematodes. Description: Lee, Yi-Chien, et al. Single-worm long-read sequencing reveals genome diversity in free-living nematodes. ''Nucleic Acids Res''. 2023 Aug 25; '''51''' (15):8035-8047
Anthropogenic activities mediate stratification and stability of microbial communities in freshwater sediments. Description: Zhou, Xiaotian, et al. Anthropogenic activities mediate stratification and stability of microbial communities in freshwater sediments. ''Microbiome''. 2023 Aug 26; '''11''' (1):191
Characterization of Diverse Anelloviruses, Cressdnaviruses, and Bacteriophages in the Human Oral DNA Virome from North Carolina (USA). Description: Paietta, Elise N, et al. Characterization of Diverse Anelloviruses, Cressdnaviruses, and Bacteriophages in the Human Oral DNA Virome from North Carolina (USA). ''Viruses''. 2023 Aug 26; '''15''' (9):
Stratified microbial communities in Australia's only anchialine cave are taxonomically novel and drive chemotrophic energy production via coupled nitrogen-sulphur cycling. Description: Ghaly, Timothy M, et al. Stratified microbial communities in Australia's only anchialine cave are taxonomically novel and drive chemotrophic energy production via coupled nitrogen-sulphur cycling. ''Microbiome''. 2023 Aug 26; '''11''' (1):190
Aldiminium Cations as Countercations to Discrete Main Group Fluoroanions. Description: Gruden, Evelin, et al. Aldiminium Cations as Countercations to Discrete Main Group Fluoroanions. ''Molecules''. 2023 Aug 27; '''28''' (17):
The genome of the colonial hydroid Hydractinia reveals their stem cells utilize a toolkit of evolutionarily shared genes with all animals. Description: Schnitzler, Christine E, et al. The genome of the colonial hydroid Hydractinia reveals their stem cells utilize a toolkit of evolutionarily shared genes with all animals. ''bioRxiv''. 2023 Aug 27;
Microbe transmission from pet shop to lab-reared zebrafish reveals a pathogenic birnavirus. Description: Rice, Marlen C, et al. Microbe transmission from pet shop to lab-reared zebrafish reveals a pathogenic birnavirus. ''bioRxiv''. 2023 Aug 28;
Multi-omics reveal microbial determinants impacting the treatment outcome of antidepressants in major depressive disorder. Description: Wang, Yaping, et al. Multi-omics reveal microbial determinants impacting the treatment outcome of antidepressants in major depressive disorder. ''Microbiome''. 2023 Aug 28; '''11''' (1):195
Whole Genome Sequence of Lactiplantibacillus plantarum HOM3204 and Its Antioxidant Effect on D-Galactose-Induced Aging in Mice. Description: Zhang, Di, et al. Whole Genome Sequence of Lactiplantibacillus plantarum HOM3204 and Its Antioxidant Effect on D-Galactose-Induced Aging in Mice. ''J Microbiol Biotechnol''. 2023 Aug 28; '''33''' (8):1030-1038
A microbial consortium alters intestinal Pseudomonadota and antimicrobial resistance genes in individuals with recurrent Clostridioides difficile infection. Description: Rooney, Ashley M, et al. A microbial consortium alters intestinal Pseudomonadota and antimicrobial resistance genes in individuals with recurrent Clostridioides difficile infection. ''mBio''. 2023 Aug 31; '''14''' (4):e0348222
Cervicovaginal Gardnerella sialidase-encoding gene in persistent human papillomavirus infection. Description: Novak, Juliano, et al. Cervicovaginal Gardnerella sialidase-encoding gene in persistent human papillomavirus infection. ''Sci Rep''. 2023 Aug 31; '''13''' (1):14266
Diversity of Bathyarchaeia viruses in metagenomes and virus-encoded CRISPR system components. Description: Duan, Changhai, et al. Diversity of Bathyarchaeia viruses in metagenomes and virus-encoded CRISPR system components. ''bioRxiv''. 2023 Aug 31;
Human milk oligosaccharides modulate the intestinal microbiome of healthy adults. Description: Jacobs, Jonathan P, et al. Human milk oligosaccharides modulate the intestinal microbiome of healthy adults. ''Sci Rep''. 2023 Aug 31; '''13''' (1):14308
Mining Public Data to Investigate the Virome of Neglected Pollinators and Other Floral Visitors. Description: de Santana, Sabrina Ferreira, et al. Mining Public Data to Investigate the Virome of Neglected Pollinators and Other Floral Visitors. ''Viruses''. 2023 Aug 31; '''15''' (9):
Unraveling the roles of coastal bacterial consortia in degradation of various lignocellulosic substrates. Description: Peng, Qiannan, et al. Unraveling the roles of coastal bacterial consortia in degradation of various lignocellulosic substrates. ''mSystems''. 2023 Aug 31; '''8''' (4):e0128322
A network embedding approach to identify active modules in biological interaction networks. Description: Pasquier, Claude, et al. A network embedding approach to identify active modules in biological interaction networks. ''Life Sci Alliance''. 2023 Sep; '''6''' (9):
Characterization and genomic analysis of a novel lytic phage vB_PstM_ZRG1 infecting Stutzerimonas stutzeri, representing a new viral genus, Elithevirus. Description: Chen, Ying, et al. Characterization and genomic analysis of a novel lytic phage vB_PstM_ZRG1 infecting Stutzerimonas stutzeri, representing a new viral genus, Elithevirus. ''Virus Res''. 2023 Sep; '''334''': 199183
Environmental selection and evolutionary process jointly shape genomic and functional profiles of mangrove rhizosphere microbiomes. Description: Yu, Xiaoli, et al. Environmental selection and evolutionary process jointly shape genomic and functional profiles of mangrove rhizosphere microbiomes. ''mLife''. 2023 Sep; '''2''' (3):253-266
Genomic epidemiology unveils the dynamics and spatial corridor behind the Yellow Fever virus outbreak in Southern Brazil. Description: Giovanetti, Marta, et al. Genomic epidemiology unveils the dynamics and spatial corridor behind the Yellow Fever virus outbreak in Southern Brazil. ''Sci Adv''. 2023 Sep; '''9''' (35):eadg9204
Genomic molecular epidemiology of carbapenemase-producing Escherichia coli ST410 isolates by complete genome analysis. Description: Kyung, Su Min, et al. Genomic molecular epidemiology of carbapenemase-producing Escherichia coli ST410 isolates by complete genome analysis. ''Vet Res''. 2023 Sep 1; '''54''' (1):72
Intestinal microbiota links to allograft stability after lung transplantation: a prospective cohort study. Description: Wu, Junqi, et al. Intestinal microbiota links to allograft stability after lung transplantation: a prospective cohort study. ''Signal Transduct Target Ther''. 2023 Sep 1; '''8''' (1):326
Modification of HEART Pathway for Patients With Chest Pain: A Korean Perspective. Description: Chae, Bora, et al. Modification of HEART Pathway for Patients With Chest Pain: A Korean Perspective. ''Korean Circ J''. 2023 Sep; '''53''' (9):635-644
Multiple infections of zoonotic pathogens in wild Brandt's voles (Lasiopodomys brandtii). Description: Guo, Yongman, et al. Multiple infections of zoonotic pathogens in wild Brandt's voles (Lasiopodomys brandtii). ''Vet Med Sci''. 2023 Sep; '''9''' (5):2201-2211
Origin and functional diversification of PAS domain, a ubiquitous intracellular sensor. Description: Xing, Jiawei, et al. Origin and functional diversification of PAS domain, a ubiquitous intracellular sensor. ''Sci Adv''. 2023 Sep; '''9''' (35):eadi4517
Relation of pest insect-killing and soilborne pathogen-inhibition abilities to species diversification in environmental Pseudomonas protegens. Description: Garrido-Sanz, Daniel, et al. Relation of pest insect-killing and soilborne pathogen-inhibition abilities to species diversification in environmental Pseudomonas protegens. ''ISME J''. 2023 Sep; '''17''' (9):1369-1381
Seasonal dynamics of the wild rodent faecal virome. Description: Raghwani, Jayna, et al. Seasonal dynamics of the wild rodent faecal virome. ''Mol Ecol''. 2023 Sep; '''32''' (17):4763-4776
Short-term dietary changes can result in mucosal and systemic immune depression. Description: Siracusa, Francesco, et al. Short-term dietary changes can result in mucosal and systemic immune depression. ''Nat Immunol''. 2023 Sep; '''24''' (9):1473-1486
Telomere-to-telomere haplotype-resolved reference genome reveals subgenome divergence and disease resistance in triploid Cavendish banana. Description: Huang, Hui-Run, et al. Telomere-to-telomere haplotype-resolved reference genome reveals subgenome divergence and disease resistance in triploid Cavendish banana. ''Hortic Res''. 2023 Sep; '''10''' (9):uhad153
Temporal Changes in Coronary (18)F-Fluoride Plaque Uptake in Patients with Coronary Atherosclerosis. Description: Daghem, Marwa, et al. Temporal Changes in Coronary (18)F-Fluoride Plaque Uptake in Patients with Coronary Atherosclerosis. ''J Nucl Med''. 2023 Sep; '''64''' (9):1478-1486
Chromosomal-level Genome Assembly of the Coffee Bee Hawk Moth Reveals the Evolution of Chromosomes and the Molecular Basis of Distinct Phenotypes. Description: Yamabe, Takahiro, et al. Chromosomal-level Genome Assembly of the Coffee Bee Hawk Moth Reveals the Evolution of Chromosomes and the Molecular Basis of Distinct Phenotypes. ''Genome Biol Evol''. 2023 Sep 4; '''15''' (9):
I am better than I look: genome based safety assessment of the probiotic Lactiplantibacillus plantarum IS-10506. Description: Umanets, Alexander, et al. I am better than I look: genome based safety assessment of the probiotic Lactiplantibacillus plantarum IS-10506. ''BMC Genomics''. 2023 Sep 4; '''24''' (1):518
Serratia marcescens Outbreak at a Correctional Facility: Environmental Sampling, Laboratory Analyses and Genomic Characterization to Assess Sources and Persistence. Description: Ferguson, Donna, et al. Serratia marcescens Outbreak at a Correctional Facility: Environmental Sampling, Laboratory Analyses and Genomic Characterization to Assess Sources and Persistence. ''Int J Environ Res Public Health''. 2023 Sep 4; '''20''' (17):
Analysis of gut microbiota in chinese donkey in different regions using metagenomic sequencing. Description: Guo, Rong, et al. Analysis of gut microbiota in chinese donkey in different regions using metagenomic sequencing. ''BMC Genomics''. 2023 Sep 5; '''24''' (1):524
Glycerol biosynthetic pathway plays an essential role in proliferation and antioxidative defense in the human enteric protozoan parasite Entamoeba histolytica. Description: Jeelani, Ghulam, et al. Glycerol biosynthetic pathway plays an essential role in proliferation and antioxidative defense in the human enteric protozoan parasite Entamoeba histolytica. ''Sci Rep''. 2023 Sep 5; '''13''' (1):14596
Metagenomic analysis of individual mosquitos reveals the ecology of insect viruses. Description: Pan, Yuan-Fei, et al. Metagenomic analysis of individual mosquitos reveals the ecology of insect viruses. ''bioRxiv''. 2023 Sep 5;
Chromosome level genome assembly of oriental armyworm Mythimna separata. Description: Xu, Chao, et al. Chromosome level genome assembly of oriental armyworm Mythimna separata. ''Sci Data''. 2023 Sep 8; '''10''' (1):597
Gut microbes exacerbate systemic inflammation and behavior disorders in neurologic disease CADASIL. Description: Liu, Sheng, et al. Gut microbes exacerbate systemic inflammation and behavior disorders in neurologic disease CADASIL. ''Microbiome''. 2023 Sep 8; '''11''' (1):202
One high quality genome and two transcriptome datasets for new species of Mantamonas, a deep-branching eukaryote clade. Description: Blaz, Jazmin, et al. One high quality genome and two transcriptome datasets for new species of Mantamonas, a deep-branching eukaryote clade. ''Sci Data''. 2023 Sep 9; '''10''' (1):603
Identification and characterization of novel alphacoronaviruses in Tadarida brasiliensis (Chiroptera, Molossidae) from Argentina: insights into recombination as a mechanism favoring bat coronavirus cross-species transmission. Description: Cerri, Agustina, et al. Identification and characterization of novel alphacoronaviruses in Tadarida brasiliensis (Chiroptera, Molossidae) from Argentina: insights into recombination as a mechanism favoring bat coronavirus cross-species transmission. ''Microbiol Spectr''. 2023 Sep 11; '''11''' (5):e0204723
Diversity of RNA viruses in the cosmopolitan monoxenous trypanosomatid Leptomonas pyrrhocoris. Description: Macedo, Diego H, et al. Diversity of RNA viruses in the cosmopolitan monoxenous trypanosomatid Leptomonas pyrrhocoris. ''BMC Biol''. 2023 Sep 12; '''21''' (1):191
Bridging the Gap: Combining Genomics and Transcriptomics Approaches to Understand Stylosanthes scabra, an Orphan Legume from the Brazilian Caatinga. Description: Ferreira-Neto, Jose Ribamar Costa, et al. Bridging the Gap: Combining Genomics and Transcriptomics Approaches to Understand Stylosanthes scabra, an Orphan Legume from the Brazilian Caatinga. ''Plants (Basel)''. 2023 Sep 13; '''12''' (18):
Genome-wide analysis of the AP2/ERF gene family in Tritipyrum and the response of TtERF_B2-50 in salt-tolerance. Description: Liu, Xiaojuan, et al. Genome-wide analysis of the AP2/ERF gene family in Tritipyrum and the response of TtERF_B2-50 in salt-tolerance. ''BMC Genomics''. 2023 Sep 13; '''24''' (1):541
Transcriptomic and genomic identification of spliceosomal genes from Euglena gracilis. Description: Gao, Pingwei, et al. Transcriptomic and genomic identification of spliceosomal genes from Euglena gracilis. ''Acta Biochim Biophys Sin (Shanghai)''. 2023 Sep 13; '''55''' (11):1740-1748
Derivatives Incorporating Acridine, Pyrrole, and Thiazolidine Rings as Promising Antitumor Agents. Description: Garberova, Monika, et al. Derivatives Incorporating Acridine, Pyrrole, and Thiazolidine Rings as Promising Antitumor Agents. ''Molecules''. 2023 Sep 14; '''28''' (18):
Plastics shape the black soldier fly larvae gut microbiome and select for biodegrading functions. Description: De Filippis, Francesca, et al. Plastics shape the black soldier fly larvae gut microbiome and select for biodegrading functions. ''Microbiome''. 2023 Sep 14; '''11''' (1):205
A moderately thermophilic origin of a novel family of marine group II euryarchaeota from deep ocean. Description: Liu, Haodong, et al. A moderately thermophilic origin of a novel family of marine group II euryarchaeota from deep ocean. ''iScience''. 2023 Sep 15; '''26''' (9):107664
Crystallization as a selection force at the polymerization of nucleotides in a prebiotic context. Description: Sponer, Judit E, et al. Crystallization as a selection force at the polymerization of nucleotides in a prebiotic context. ''iScience''. 2023 Sep 15; '''26''' (9):107600
Metagenomic analysis reveals the dissemination mechanisms and risks of resistance genes in plateau lakes. Description: Mao, Chengzhi, et al. Metagenomic analysis reveals the dissemination mechanisms and risks of resistance genes in plateau lakes. ''iScience''. 2023 Sep 15; '''26''' (9):107508
Peeling back the layers of coral holobiont multi-omics data. Description: Williams, Amanda, et al. Peeling back the layers of coral holobiont multi-omics data. ''iScience''. 2023 Sep 15; '''26''' (9):107623
Signatures of transposon-mediated genome inflation, host specialization, and photoentrainment in Entomophthora muscae and allied entomophthoralean fungi. Description: Stajich, Jason E, et al. Signatures of transposon-mediated genome inflation, host specialization, and photoentrainment in Entomophthora muscae and allied entomophthoralean fungi. ''bioRxiv''. 2023 Sep 16;
Diverse signatures of convergent evolution in cacti-associated yeasts. Description: Goncalves, Carla, et al. Diverse signatures of convergent evolution in cacti-associated yeasts. ''bioRxiv''. 2023 Sep 17;
Bacteriophages limitedly contribute to the antimicrobial resistome of microbial communities in wastewater treatment plants. Description: Sabatino, Raffaella, et al. Bacteriophages limitedly contribute to the antimicrobial resistome of microbial communities in wastewater treatment plants. ''Microbiol Spectr''. 2023 Sep 19; '''11''' (5):e0110123
Highly divergent CRESS DNA and picorna-like viruses associated with bleached thalli of the green seaweed Ulva. Description: van der Loos, Luna M, et al. Highly divergent CRESS DNA and picorna-like viruses associated with bleached thalli of the green seaweed Ulva. ''Microbiol Spectr''. 2023 Sep 19; '''11''' (5):e0025523
Integrated meta-omics approaches reveal Saccharopolyspora as the core functional genus in huangjiu fermentations. Description: Liu, Shuangping, et al. Integrated meta-omics approaches reveal Saccharopolyspora as the core functional genus in huangjiu fermentations. ''NPJ Biofilms Microbiomes''. 2023 Sep 19; '''9''' (1):65
Unfolding the secrets of microbiome (Symbiodiniaceae and bacteria) in cold-water coral. Description: Gong, Sanqiang, et al. Unfolding the secrets of microbiome (Symbiodiniaceae and bacteria) in cold-water coral. ''Microbiol Spectr''. 2023 Sep 20; '''11''' (5):e0131523
Innovative strategy for the conservation of a millennial mausoleum from biodeterioration through artificial light management. Description: Bao, Yuanyuan, et al. Innovative strategy for the conservation of a millennial mausoleum from biodeterioration through artificial light management. ''NPJ Biofilms Microbiomes''. 2023 Sep 23; '''9''' (1):69
Phylogenetic diversity and functional potential of the microbial communities along the Bay of Bengal coast. Description: Akter, Salma, et al. Phylogenetic diversity and functional potential of the microbial communities along the Bay of Bengal coast. ''Sci Rep''. 2023 Sep 25; '''13''' (1):15976
Artificial switches induce the bespoke production of functional compounds in marine microalgae Chlorella by neutralizing CO(2). Description: Gu, Jiahua, et al. Artificial switches induce the bespoke production of functional compounds in marine microalgae Chlorella by neutralizing CO(2). ''Biotechnol Biofuels Bioprod''. 2023 Sep 27; '''16''' (1):143
The gut metabolite 3-hydroxyphenylacetic acid rejuvenates spermatogenic dysfunction in aged mice through GPX4-mediated ferroptosis. Description: Jin, Zirun, et al. The gut metabolite 3-hydroxyphenylacetic acid rejuvenates spermatogenic dysfunction in aged mice through GPX4-mediated ferroptosis. ''Microbiome''. 2023 Sep 27; '''11''' (1):212
The presence of benzene ring activating CoA ligases for aromatics degradation in the ANaerobic MEthanotrophic (ANME) archaea. Description: Liu, Wei-Wei, et al. The presence of benzene ring activating CoA ligases for aromatics degradation in the ANaerobic MEthanotrophic (ANME) archaea. ''Microbiol Spectr''. 2023 Sep 27; '''11''' (5):e0176623
Efficient gene orthology inference via large-scale rearrangements. Description: Rubert, Diego P, et al. Efficient gene orthology inference via large-scale rearrangements. ''Algorithms Mol Biol''. 2023 Sep 28; '''18''' (1):14
A repertoire of candidate effector proteins of the fungus Ceratocystis cacaofunesta. Description: Ramos-Lizardo, Gabriela N, et al. A repertoire of candidate effector proteins of the fungus Ceratocystis cacaofunesta. ''Sci Rep''. 2023 Sep 29; '''13''' (1):16368
Multi-omics revealed the long-term effect of ruminal keystone bacteria and the microbial metabolome on lactation performance in adult dairy goats. Description: Wang, Dangdang, et al. Multi-omics revealed the long-term effect of ruminal keystone bacteria and the microbial metabolome on lactation performance in adult dairy goats. ''Microbiome''. 2023 Sep 29; '''11''' (1):215
Unbiased multitissue transcriptomic analysis reveals complex neuroendocrine regulatory networks mediated by spinal cord injury-induced immunodeficiency. Description: Zeng, Hong, et al. Unbiased multitissue transcriptomic analysis reveals complex neuroendocrine regulatory networks mediated by spinal cord injury-induced immunodeficiency. ''J Neuroinflammation''. 2023 Sep 30; '''20''' (1):219
Akkermansia muciniphila participates in the host protection against helminth-induced cardiac fibrosis via TLR2. Description: Wang, Jiaqi, et al. Akkermansia muciniphila participates in the host protection against helminth-induced cardiac fibrosis via TLR2. ''PLoS Pathog''. 2023 Oct; '''19''' (10):e1011683
Chromosome-level genome of butterflyfish unveils genomic features of unique colour patterns and morphological traits. Description: Zhang, Suyu, et al. Chromosome-level genome of butterflyfish unveils genomic features of unique colour patterns and morphological traits. ''DNA Res''. 2023 Oct 1; '''30''' (5):
Data of de novo assembly and functional annotation of transcriptome of Peninsular Malaysian Amomum Roxb. species. Description: Fareed, Fathmath Shaman, et al. Data of de novo assembly and functional annotation of transcriptome of Peninsular Malaysian Amomum Roxb. species. ''Data Brief''. 2023 Oct; '''50''': 109507
Dietary neoagarotetraose extends lifespan and impedes brain aging in mice via regulation of microbiota-gut-brain axis. Description: Li, Tao, et al. Dietary neoagarotetraose extends lifespan and impedes brain aging in mice via regulation of microbiota-gut-brain axis. ''J Adv Res''. 2023 Oct; '''52''': 119-134
Does the Use of Different Types of Probiotics Possess Detoxification Properties Against Aflatoxins Contamination in Rabbit Diets? Description: Mohamed, Said I A, et al. Does the Use of Different Types of Probiotics Possess Detoxification Properties Against Aflatoxins Contamination in Rabbit Diets? ''Probiotics Antimicrob Proteins''. 2023 Oct; '''15''' (5):1382-1392
Evolution of RNA viruses in trypanosomatids: new insights from the analysis of Sauroleishmania. Description: Klocek, Donnamae, et al. Evolution of RNA viruses in trypanosomatids: new insights from the analysis of Sauroleishmania. ''Parasitol Res''. 2023 Oct; '''122''' (10):2279-2286
Extreme summers impact cropland and grassland soil microbiomes. Description: Bei, Qicheng, et al. Extreme summers impact cropland and grassland soil microbiomes. ''ISME J''. 2023 Oct; '''17''' (10):1589-1600
Mycobacteriaceae Phenome Atlas (MPA): A Standardized Atlas for the Mycobacteriaceae Phenome Based on Heterogeneous Sources. Description: Liu, Wan, et al. Mycobacteriaceae Phenome Atlas (MPA): A Standardized Atlas for the Mycobacteriaceae Phenome Based on Heterogeneous Sources. ''Phenomics''. 2023 Oct; '''3''' (5):439-456
Panax ginseng ameliorates hepatorenal oxidative alterations induced by commercially used cypermethrin in male rats: experimental and molecular docking approaches. Description: Elblehi, Samar S, et al. Panax ginseng ameliorates hepatorenal oxidative alterations induced by commercially used cypermethrin in male rats: experimental and molecular docking approaches. ''Environ Sci Pollut Res Int''. 2023 Oct; '''30''' (50):109702-109723
Prevotella copri alleviates sarcopenia via attenuating muscle mass loss and function decline. Description: Liu, Xiaolei, et al. Prevotella copri alleviates sarcopenia via attenuating muscle mass loss and function decline. ''J Cachexia Sarcopenia Muscle''. 2023 Oct; '''14''' (5):2275-2288
Revisiting evolutionary trajectories and the organization of the Pleolipoviridae family. Description: Alarcon-Schumacher, Tomas, et al. Revisiting evolutionary trajectories and the organization of the Pleolipoviridae family. ''PLoS Genet''. 2023 Oct; '''19''' (10):e1010998
Single-cell transcriptome and metagenome profiling reveals the genetic basis of rumen functions and convergent developmental patterns in ruminants. Description: Deng, Juan, et al. Single-cell transcriptome and metagenome profiling reveals the genetic basis of rumen functions and convergent developmental patterns in ruminants. ''Genome Res''. 2023 Oct; '''33''' (10):1690-1707
Sulforaphane-driven reprogramming of gut microbiome and metabolome ameliorates the progression of hyperuricemia. Description: Wang, Ruoyu, et al. Sulforaphane-driven reprogramming of gut microbiome and metabolome ameliorates the progression of hyperuricemia. ''J Adv Res''. 2023 Oct; '''52''': 19-28
Telomere-to-telomere genome assembly of an allotetraploid pernicious weed, Echinochloa phyllopogon. Description: Sato, Mitsuhiko P, et al. Telomere-to-telomere genome assembly of an allotetraploid pernicious weed, Echinochloa phyllopogon. ''DNA Res''. 2023 Oct 1; '''30''' (5):
The pig pangenome provides insights into the roles of coding structural variations in genetic diversity and adaptation. Description: Li, Zhengcao, et al. The pig pangenome provides insights into the roles of coding structural variations in genetic diversity and adaptation. ''Genome Res''. 2023 Oct; '''33''' (10):1833-1847
Trichomonas vaginalis adherence phenotypes and extracellular vesicles impact parasite survival in a novel in vivo model of pathogenesis. Description: Molgora, Brenda M, et al. Trichomonas vaginalis adherence phenotypes and extracellular vesicles impact parasite survival in a novel in vivo model of pathogenesis. ''PLoS Negl Trop Dis''. 2023 Oct; '''17''' (10):e0011693
Virus-pathogen interactions improve water quality along the Middle Route of the South-to-North Water Diversion Canal. Description: Chen, Tianyi, et al. Virus-pathogen interactions improve water quality along the Middle Route of the South-to-North Water Diversion Canal. ''ISME J''. 2023 Oct; '''17''' (10):1719-1732
Stable functional structure despite high taxonomic variability across fungal communities in soils of old-growth montane forests. Description: Zeng, Qingchao, et al. Stable functional structure despite high taxonomic variability across fungal communities in soils of old-growth montane forests. ''Microbiome''. 2023 Oct 2; '''11''' (1):217
Synechococcus nitrogen gene loss in iron-limited ocean regions. Description: Sharpe, Garrett, et al. Synechococcus nitrogen gene loss in iron-limited ocean regions. ''ISME Commun''. 2023 Oct 2; '''3''' (1):107
Angelica polysaccharides relieve blood glucose levels in diabetic KKAy mice possibly by modulating gut microbiota: an integrated gut microbiota and metabolism analysis. Description: Tang, Xiaolong, et al. Angelica polysaccharides relieve blood glucose levels in diabetic KKAy mice possibly by modulating gut microbiota: an integrated gut microbiota and metabolism analysis. ''BMC Microbiol''. 2023 Oct 3; '''23''' (1):281
Effect on the Skin Microbiota of Oral Minocycline for Rosacea. Description: Zhang, Yiyi, et al. Effect on the Skin Microbiota of Oral Minocycline for Rosacea. ''Acta Derm Venereol''. 2023 Oct 3; '''103''': adv10331
Genome-wide identification, comparative analysis and functional roles in flavonoid biosynthesis of cytochrome P450 superfamily in pear (Pyrus spp.). Description: Zhang, Wei, et al. Genome-wide identification, comparative analysis and functional roles in flavonoid biosynthesis of cytochrome P450 superfamily in pear (Pyrus spp.). ''BMC Genom Data''. 2023 Oct 3; '''24''' (1):58
Inter-species association mapping links splice site evolution to METTL16 and SNRNP27K. Description: Parker, Matthew T, et al. Inter-species association mapping links splice site evolution to METTL16 and SNRNP27K. ''Elife''. 2023 Oct 3; '''12''':
The Multifaceted Effects of Short-Term Acute Hypoxia Stress: Insights into the Tolerance Mechanism of Propsilocerus akamusi (Diptera: Chironomidae). Description: Zhang, Yao, et al. The Multifaceted Effects of Short-Term Acute Hypoxia Stress: Insights into the Tolerance Mechanism of Propsilocerus akamusi (Diptera: Chironomidae). ''Insects''. 2023 Oct 3; '''14''' (10):
Homologous Pairs of Low and High Temperature Originating Proteins Spanning the Known Prokaryotic Universe. Description: Komp, Evan, et al. Homologous Pairs of Low and High Temperature Originating Proteins Spanning the Known Prokaryotic Universe. ''Sci Data''. 2023 Oct 7; '''10''' (1):682
Marine viruses disperse bidirectionally along the natural water cycle. Description: Rahlff, Janina, et al. Marine viruses disperse bidirectionally along the natural water cycle. ''Nat Commun''. 2023 Oct 10; '''14''' (1):6354
Model-driven characterization of functional diversity of Pseudomonas aeruginosa clinical isolates with broadly representative phenotypes. Description: Islam, Mohammad Mazharul, et al. Model-driven characterization of functional diversity of Pseudomonas aeruginosa clinical isolates with broadly representative phenotypes. ''bioRxiv''. 2023 Oct 10;
De novo transcriptome profiling and development of novel secondary metabolites based genic SSRs in medicinal plant Phyllanthus emblica L. (Aonla). Description: Kapoor, Bhuvnesh, et al. De novo transcriptome profiling and development of novel secondary metabolites based genic SSRs in medicinal plant Phyllanthus emblica L. (Aonla). ''Sci Rep''. 2023 Oct 12; '''13''' (1):17319
Metagenome-wide analysis uncovers gut microbial signatures and implicates taxon-specific functions in end-stage renal disease. Description: Zhang, Pan, et al. Metagenome-wide analysis uncovers gut microbial signatures and implicates taxon-specific functions in end-stage renal disease. ''Genome Biol''. 2023 Oct 12; '''24''' (1):226
Globally distributed Myxococcota with photosynthesis gene clusters illuminate the origin and evolution of a potentially chimeric lifestyle. Description: Li, Liuyang, et al. Globally distributed Myxococcota with photosynthesis gene clusters illuminate the origin and evolution of a potentially chimeric lifestyle. ''Nat Commun''. 2023 Oct 13; '''14''' (1):6450
Coexistence of specialist and generalist species within mixed plastic derivative-utilizing microbial communities. Description: Schaerer, Laura, et al. Coexistence of specialist and generalist species within mixed plastic derivative-utilizing microbial communities. ''Microbiome''. 2023 Oct 14; '''11''' (1):224
Comparative Genomic Analysis and Metabolic Potential Profiling of a Novel Culinary-Medicinal Mushroom, Hericium rajendrae (Basidiomycota). Description: Wei, Jing, et al. Comparative Genomic Analysis and Metabolic Potential Profiling of a Novel Culinary-Medicinal Mushroom, Hericium rajendrae (Basidiomycota). ''J Fungi (Basel)''. 2023 Oct 15; '''9''' (10):
Distantly related Alteromonas bacteriophages share tail fibers exhibiting properties of transient chaperone caps. Description: Gonzalez-Serrano, Rafael, et al. Distantly related Alteromonas bacteriophages share tail fibers exhibiting properties of transient chaperone caps. ''Nat Commun''. 2023 Oct 16; '''14''' (1):6517
Genomic Characteristics and Comparative Genomics Analysis of the Endophytic Fungus Paraphoma chrysanthemicola DS-84 Isolated from Codonopsis pilosula Root. Description: Sun, Wenbin, et al. Genomic Characteristics and Comparative Genomics Analysis of the Endophytic Fungus Paraphoma chrysanthemicola DS-84 Isolated from Codonopsis pilosula Root. ''J Fungi (Basel)''. 2023 Oct 16; '''9''' (10):
Viromes vs. mixed community metagenomes: choice of method dictates interpretation of viral community ecology. Description: Kosmopoulos, James C, et al. Viromes vs. mixed community metagenomes: choice of method dictates interpretation of viral community ecology. ''bioRxiv''. 2023 Oct 17;
De novo transcriptome assembly of an Antarctic nematode for the study of thermal adaptation in marine parasites. Description: Palomba, Marialetizia, et al. De novo transcriptome assembly of an Antarctic nematode for the study of thermal adaptation in marine parasites. ''Sci Data''. 2023 Oct 19; '''10''' (1):720
Exploring the biosynthetic gene clusters in Brevibacterium: a comparative genomic analysis of diversity and distribution. Description: Cumsille, Andres, et al. Exploring the biosynthetic gene clusters in Brevibacterium: a comparative genomic analysis of diversity and distribution. ''BMC Genomics''. 2023 Oct 19; '''24''' (1):622
The energy metabolism of Balantidium polyvacuolum inhabiting the hindgut of Xenocypris davidi. Description: Bu, Xia-Lian, et al. The energy metabolism of Balantidium polyvacuolum inhabiting the hindgut of Xenocypris davidi. ''BMC Genomics''. 2023 Oct 19; '''24''' (1):624
Comparison of Oral Microbial Composition and Determinants Encoding Antimicrobial Resistance in Dogs and Their Owners. Description: Sakarnyte, Laura, et al. Comparison of Oral Microbial Composition and Determinants Encoding Antimicrobial Resistance in Dogs and Their Owners. ''Antibiotics (Basel)''. 2023 Oct 20; '''12''' (10):
Effect of Lactobacillus salivarius SNK-6 on egg quality, intestinal morphology, and cecal microbial community of laying hens. Description: Liu, Wei, et al. Effect of Lactobacillus salivarius SNK-6 on egg quality, intestinal morphology, and cecal microbial community of laying hens. ''Poult Sci''. 2023 Oct 21; '''103''' (1):103224
Global diversity and biogeography of DNA viral communities in activated sludge systems. Description: Fan, Xiangyu, et al. Global diversity and biogeography of DNA viral communities in activated sludge systems. ''Microbiome''. 2023 Oct 21; '''11''' (1):234
Rationally-defined microbial consortia suppress multidrug-resistant proinflammatory Enterobacteriaceae via ecological control. Description: Honda, Kenya, et al. Rationally-defined microbial consortia suppress multidrug-resistant proinflammatory Enterobacteriaceae via ecological control. ''Res Sq''. 2023 Oct 23;
Infants exposed in utero to Hurricane Maria have gut microbiomes with reduced diversity and altered metabolic capacity. Description: Zhang, Ai, et al. Infants exposed in utero to Hurricane Maria have gut microbiomes with reduced diversity and altered metabolic capacity. ''mSphere''. 2023 Oct 24; '''8''' (5):e0013423
Untangling an insect's virome from its endogenous viral elements. Description: Rozo-Lopez, Paula, et al. Untangling an insect's virome from its endogenous viral elements. ''BMC Genomics''. 2023 Oct 24; '''24''' (1):636
Virome of high-altitude canine digestive tract and genetic characterization of novel viruses potentially threatening human health. Description: Jiang, Xiaojie, et al. Virome of high-altitude canine digestive tract and genetic characterization of novel viruses potentially threatening human health. ''mSphere''. 2023 Oct 24; '''8''' (5):e0034523
Protein Language Models Uncover Carbohydrate-Active Enzyme Function in Metagenomics. Description: Thurimella, Kumar, et al. Protein Language Models Uncover Carbohydrate-Active Enzyme Function in Metagenomics. ''bioRxiv''. 2023 Oct 25;
Abnormal blood microbiota profiles are associated with inflammation and immune restoration in HIV/AIDS individuals. Description: Guo, Xiaoyan, et al. Abnormal blood microbiota profiles are associated with inflammation and immune restoration in HIV/AIDS individuals. ''mSystems''. 2023 Oct 26; '''8''' (5):e0046723
Metagenomic and metabolomic analyses reveal the role of gut microbiome-associated metabolites in diarrhea calves. Description: Shi, Zhihai, et al. Metagenomic and metabolomic analyses reveal the role of gut microbiome-associated metabolites in diarrhea calves. ''mSystems''. 2023 Oct 26; '''8''' (5):e0058223
Metagenomics uncovers dietary adaptations for chitin digestion in the gut microbiota of convergent myrmecophagous mammals. Description: Teullet, Sophie, et al. Metagenomics uncovers dietary adaptations for chitin digestion in the gut microbiota of convergent myrmecophagous mammals. ''mSystems''. 2023 Oct 26; '''8''' (5):e0038823
Very early life microbiome and metabolome correlates with primary vaccination variability in children. Description: Shaffer, Michael, et al. Very early life microbiome and metabolome correlates with primary vaccination variability in children. ''mSystems''. 2023 Oct 26; '''8''' (5):e0066123
Stress-activated brain-gut circuits disrupt intestinal barrier integrity and social behaviour. Description: Russo, Scott, et al. Stress-activated brain-gut circuits disrupt intestinal barrier integrity and social behaviour. ''Res Sq''. 2023 Oct 27;
Combining Genetic and Transcriptomic Approaches to Identify Transporter-Coding Genes as Likely Responsible for a Repeatable Salt Tolerance QTL in Citrus. Description: Asins, Maria J, et al. Combining Genetic and Transcriptomic Approaches to Identify Transporter-Coding Genes as Likely Responsible for a Repeatable Salt Tolerance QTL in Citrus. ''Int J Mol Sci''. 2023 Oct 30; '''24''' (21):
Differences in Physiological Performance and Gut Microbiota between Deep-Sea and Coastal Aquaculture of Thachinotus Ovatus: A Metagenomic Approach. Description: Li, Shuangfei, et al. Differences in Physiological Performance and Gut Microbiota between Deep-Sea and Coastal Aquaculture of Thachinotus Ovatus: A Metagenomic Approach. ''Animals (Basel)''. 2023 Oct 30; '''13''' (21):
Diet-induced rewiring of the Wnt gene regulatory network connects aberrant splicing to fatty liver and liver cancer in DIAMOND mice. Description: Lopez-Perez, Ana, et al. Diet-induced rewiring of the Wnt gene regulatory network connects aberrant splicing to fatty liver and liver cancer in DIAMOND mice. ''Sci Rep''. 2023 Oct 31; '''13''' (1):18666
Endogenous Viral Elements in Ixodid Tick Genomes. Description: Barnes, Miranda, et al. Endogenous Viral Elements in Ixodid Tick Genomes. ''Viruses''. 2023 Oct 31; '''15''' (11):
The pan-genome of Mycobacterium avium subsp. paratuberculosis (Map) confirms ancestral lineage and reveals gene rearrangements within Map Type S. Description: Hodgeman, Rachel, et al. The pan-genome of Mycobacterium avium subsp. paratuberculosis (Map) confirms ancestral lineage and reveals gene rearrangements within Map Type S. ''BMC Genomics''. 2023 Oct 31; '''24''' (1):656
Transcriptome analysis of Corvus splendens reveals a repertoire of antimicrobial peptides. Description: Kannoth, Shalini, et al. Transcriptome analysis of Corvus splendens reveals a repertoire of antimicrobial peptides. ''Sci Rep''. 2023 Oct 31; '''13''' (1):18728
A Metagenomic Time-Series Approach to Assess the Ecological Stability of Microbial Mats in a Seasonally Fluctuating Environment. Description: Madrigal-Trejo, David, et al. A Metagenomic Time-Series Approach to Assess the Ecological Stability of Microbial Mats in a Seasonally Fluctuating Environment. ''Microb Ecol''. 2023 Nov; '''86''' (4):2252-2270
Comparative analysis of mitochondrion-related organelles in anaerobic amoebozoans. Description: Zahonova, Kristina, et al. Comparative analysis of mitochondrion-related organelles in anaerobic amoebozoans. ''Microb Genom''. 2023 Nov; '''9''' (11):
Effects of dietary supplement with licorice and rutin mixture on production performance, egg quality, antioxidant capacity, and gut microbiota in quails (Turnix tanki). Description: Li, Yan, et al. Effects of dietary supplement with licorice and rutin mixture on production performance, egg quality, antioxidant capacity, and gut microbiota in quails (Turnix tanki). ''Poult Sci''. 2023 Nov; '''102''' (11):103038
Extending and improving metagenomic taxonomic profiling with uncharacterized species using MetaPhlAn 4. Description: Blanco-Miguez, Aitor, et al. Extending and improving metagenomic taxonomic profiling with uncharacterized species using MetaPhlAn 4. ''Nat Biotechnol''. 2023 Nov; '''41''' (11):1633-1644
Genome assembly and analysis of Lactuca virosa: implications for lettuce breeding. Description: Xiong, Wei, et al. Genome assembly and analysis of Lactuca virosa: implications for lettuce breeding. ''G3 (Bethesda)''. 2023 Nov 1; '''13''' (11):
Genomic analysis of Streptococcus pneumoniae serogroup 20 isolates in Alberta, Canada from 1993-2019. Description: Williams, Ashley N, et al. Genomic analysis of Streptococcus pneumoniae serogroup 20 isolates in Alberta, Canada from 1993-2019. ''Microb Genom''. 2023 Nov; '''9''' (11):
Intraspecific difference of Latilactobacillus sakei in inflammatory bowel diseases: Insights into potential mechanisms through comparative genomics and metabolomics analyses. Description: Liu, Yaru, et al. Intraspecific difference of Latilactobacillus sakei in inflammatory bowel diseases: Insights into potential mechanisms through comparative genomics and metabolomics analyses. ''Imeta''. 2023 Nov; '''2''' (4):e136
Metagenome-assembled genomes from High Arctic glaciers highlight the vulnerability of glacier-associated microbiota and their activities to habitat loss. Description: Hay, Melanie C, et al. Metagenome-assembled genomes from High Arctic glaciers highlight the vulnerability of glacier-associated microbiota and their activities to habitat loss. ''Microb Genom''. 2023 Nov; '''9''' (11):
Near-complete de novo assembly of Tricholoma bakamatsutake chromosomes revealed the structural divergence and differentiation of Tricholoma genomes. Description: Ichida, Hiroyuki, et al. Near-complete de novo assembly of Tricholoma bakamatsutake chromosomes revealed the structural divergence and differentiation of Tricholoma genomes. ''G3 (Bethesda)''. 2023 Nov 1; '''13''' (11):
Phylogenomic Analyses Reveal an Allopolyploid Origin of Core Didymocarpinae (Gesneriaceae) Followed by Rapid Radiation. Description: Yang, Lihua, et al. Phylogenomic Analyses Reveal an Allopolyploid Origin of Core Didymocarpinae (Gesneriaceae) Followed by Rapid Radiation. ''Syst Biol''. 2023 Nov 1; '''72''' (5):1064-1083
Signatures of Extreme Longevity: A Perspective from Bivalve Molecular Evolution. Description: Iannello, Mariangela, et al. Signatures of Extreme Longevity: A Perspective from Bivalve Molecular Evolution. ''Genome Biol Evol''. 2023 Nov 1; '''15''' (11):
The Diversity and Metabolism of Culturable Nitrate-Reducing Bacteria from the Photic Zone of the Western North Pacific Ocean. Description: Jiang, Zhichen, et al. The Diversity and Metabolism of Culturable Nitrate-Reducing Bacteria from the Photic Zone of the Western North Pacific Ocean. ''Microb Ecol''. 2023 Nov; '''86''' (4):2781-2789
Transcriptome Analysis Reveals the Molecular Mechanism and Responsive Genes of Waterlogging Stress in Actinidia deliciosa Planch Kiwifruit Plants. Description: Xing, Mengyun, et al. Transcriptome Analysis Reveals the Molecular Mechanism and Responsive Genes of Waterlogging Stress in Actinidia deliciosa Planch Kiwifruit Plants. ''Int J Mol Sci''. 2023 Nov 1; '''24''' (21):
Well-hidden methanogenesis in deep, organic-rich sediments of Guaymas Basin. Description: Bojanova, Diana P, et al. Well-hidden methanogenesis in deep, organic-rich sediments of Guaymas Basin. ''ISME J''. 2023 Nov; '''17''' (11):1828-1838
Construction of an Exudative Age-Related Macular Degeneration Diagnostic and Therapeutic Molecular Network Using Multi-Layer Network Analysis, a Fuzzy Logic Model, and Deep Learning Techniques: Are Retinal and Brain Neurodegenerative Disorders Related? Description: Latifi-Navid, Hamid, et al. Construction of an Exudative Age-Related Macular Degeneration Diagnostic and Therapeutic Molecular Network Using Multi-Layer Network Analysis, a Fuzzy Logic Model, and Deep Learning Techniques: Are Retinal and Brain Neurodegenerative Disorders Related? ''Pharmaceuticals (Basel)''. 2023 Nov 2; '''16''' (11):
Telomeric repeat evolution in the phylum Nematoda revealed by high-quality genome assemblies and subtelomere structures. Description: Lim, Jiseon, et al. Telomeric repeat evolution in the phylum Nematoda revealed by high-quality genome assemblies and subtelomere structures. ''Genome Res''. 2023 Nov 2; '''33''' (11):1947-57
Genomic signals of local adaptation in Picea crassifolia. Description: Feng, Shuo, et al. Genomic signals of local adaptation in Picea crassifolia. ''BMC Plant Biol''. 2023 Nov 3; '''23''' (1):534
Pithoviruses Are Invaded by Repeats That Contribute to Their Evolution and Divergence from Cedratviruses. Description: Rigou, Sofia, et al. Pithoviruses Are Invaded by Repeats That Contribute to Their Evolution and Divergence from Cedratviruses. ''Mol Biol Evol''. 2023 Nov 3; '''40''' (11):
Bacterial quorum sensing orchestrates longitudinal interactions to shape microbiota assembly. Description: Su, Ying, et al. Bacterial quorum sensing orchestrates longitudinal interactions to shape microbiota assembly. ''Microbiome''. 2023 Nov 6; '''11''' (1):241
Genome-wide identification and expression analysis of the GASA gene family in Chinese cabbage (Brassica rapa L. ssp. pekinensis). Description: Sun, Bingxin, et al. Genome-wide identification and expression analysis of the GASA gene family in Chinese cabbage (Brassica rapa L. ssp. pekinensis). ''BMC Genomics''. 2023 Nov 6; '''24''' (1):668
Extension of the Segatella copri complex to 13 species with distinct large extrachromosomal elements and associations with host conditions. Description: Blanco-Miguez, Aitor, et al. Extension of the Segatella copri complex to 13 species with distinct large extrachromosomal elements and associations with host conditions. ''Cell Host Microbe''. 2023 Nov 8; '''31''' (11):1804-1819.e9
Short-term acidification promotes diverse iron acquisition and conservation mechanisms in upwelling-associated phytoplankton. Description: Lampe, Robert H, et al. Short-term acidification promotes diverse iron acquisition and conservation mechanisms in upwelling-associated phytoplankton. ''Nat Commun''. 2023 Nov 8; '''14''' (1):7215
Gut butyrate-producers confer post-infarction cardiac protection. Description: Chen, Hung-Chih, et al. Gut butyrate-producers confer post-infarction cardiac protection. ''Nat Commun''. 2023 Nov 9; '''14''' (1):7249
Persistent effects of intramammary ceftiofur treatment on the gut microbiome and antibiotic resistance in dairy cattle. Description: Vasco, Karla A, et al. Persistent effects of intramammary ceftiofur treatment on the gut microbiome and antibiotic resistance in dairy cattle. ''Anim Microbiome''. 2023 Nov 9; '''5''' (1):56
Where the minor things are: a pan-eukaryotic survey suggests neutral processes may explain much of minor intron evolution. Description: Larue, Graham E, et al. Where the minor things are: a pan-eukaryotic survey suggests neutral processes may explain much of minor intron evolution. ''Nucleic Acids Res''. 2023 Nov 10; '''51''' (20):10884-10908
Role of Relebactam in the Antibiotic Resistance Acquisition in Pseudomonas aeruginosa: In Vitro Study. Description: Ventero, Maria Paz, et al. Role of Relebactam in the Antibiotic Resistance Acquisition in Pseudomonas aeruginosa: In Vitro Study. ''Antibiotics (Basel)''. 2023 Nov 11; '''12''' (11):
Chicken manure application alters microbial community structure and the distribution of antibiotic-resistance genes in rhizosphere soil of Cinnamomum camphora forests. Description: Chen, Deqiang, et al. Chicken manure application alters microbial community structure and the distribution of antibiotic-resistance genes in rhizosphere soil of Cinnamomum camphora forests. ''FEMS Microbiol Ecol''. 2023 Nov 13; '''99''' (12):
Delivery mode impacts gut bacteriophage colonization during infancy. Description: Subramanian, Poorani, et al. Delivery mode impacts gut bacteriophage colonization during infancy. ''medRxiv''. 2023 Nov 13;
Functional annotation of enzyme-encoding genes using deep learning with transformer layers. Description: Kim, Gi Bae, et al. Functional annotation of enzyme-encoding genes using deep learning with transformer layers. ''Nat Commun''. 2023 Nov 14; '''14''' (1):7370
Phylogenetically and metabolically diverse autotrophs in the world's deepest blue hole. Description: Chen, Xing, et al. Phylogenetically and metabolically diverse autotrophs in the world's deepest blue hole. ''ISME Commun''. 2023 Nov 14; '''3''' (1):117
The expanding range of emerging tick-borne viruses in Eastern Europe and the Black Sea Region. Description: Ergunay, Koray, et al. The expanding range of emerging tick-borne viruses in Eastern Europe and the Black Sea Region. ''Sci Rep''. 2023 Nov 14; '''13''' (1):19824
Effects of Deformed Wing Virus-Targeting dsRNA on Viral Loads in Bees Parasitised and Non-Parasitised by Varroa destructor. Description: Smeele, Zoe E, et al. Effects of Deformed Wing Virus-Targeting dsRNA on Viral Loads in Bees Parasitised and Non-Parasitised by Varroa destructor. ''Viruses''. 2023 Nov 15; '''15''' (11):
A chromosome-level genome for the nudibranch gastropod Berghia stephanieae helps parse clade-specific gene expression in novel and conserved phenotypes. Description: Goodheart, Jessica A, et al. A chromosome-level genome for the nudibranch gastropod Berghia stephanieae helps parse clade-specific gene expression in novel and conserved phenotypes. ''bioRxiv''. 2023 Nov 16;
A large-scale assessment of sequence database search tools for homology-based protein function prediction. Description: Zhang, Chengxin, et al. A large-scale assessment of sequence database search tools for homology-based protein function prediction. ''bioRxiv''. 2023 Nov 16;
Infant microbiome cultivation and metagenomic analysis reveal Bifidobacterium 2'-fucosyllactose utilization can be facilitated by coexisting species. Description: Lou, Yue Clare, et al. Infant microbiome cultivation and metagenomic analysis reveal Bifidobacterium 2'-fucosyllactose utilization can be facilitated by coexisting species. ''Nat Commun''. 2023 Nov 16; '''14''' (1):7417
ATP synthase evolution on a cross-braced dated tree of life. Description: Mahendrarajah, Tara A, et al. ATP synthase evolution on a cross-braced dated tree of life. ''Nat Commun''. 2023 Nov 17; '''14''' (1):7456
Bacterial genome size and gene functional diversity negatively correlate with taxonomic diversity along a pH gradient. Description: Wang, Cong, et al. Bacterial genome size and gene functional diversity negatively correlate with taxonomic diversity along a pH gradient. ''Nat Commun''. 2023 Nov 17; '''14''' (1):7437
Oligoagars and microbial agents show potential for Porphyra disease prevention. Description: Ke, Lei, et al. Oligoagars and microbial agents show potential for Porphyra disease prevention. ''AMB Express''. 2023 Nov 17; '''13''' (1):128
Genomic analysis of the marine yeast Rhodotorula sphaerocarpa ETNP2018 reveals adaptation to the open ocean. Description: Lane, Dylan M, et al. Genomic analysis of the marine yeast Rhodotorula sphaerocarpa ETNP2018 reveals adaptation to the open ocean. ''BMC Genomics''. 2023 Nov 20; '''24''' (1):695
Hybrid assemblies of microbiome Blastocystis protists reveal evolutionary diversification reflecting host ecology. Description: Lind, Abigail L, et al. Hybrid assemblies of microbiome Blastocystis protists reveal evolutionary diversification reflecting host ecology. ''bioRxiv''. 2023 Nov 20;
Metallacages with 2,6-dipicolinoylbis(N,N-dialkylthioureas) as novel platforms in nuclear medicine for (68)Ga, (177)Lu and (198)Au. Description: Baitullina, Anna, et al. Metallacages with 2,6-dipicolinoylbis(N,N-dialkylthioureas) as novel platforms in nuclear medicine for (68)Ga, (177)Lu and (198)Au. ''EJNMMI Radiopharm Chem''. 2023 Nov 20; '''8''' (1):40
Unraveling the complex evolutionary history of lepidopteran chromosomes through ancestral chromosome reconstruction and novel chromosome nomenclature. Description: Chen, Xi, et al. Unraveling the complex evolutionary history of lepidopteran chromosomes through ancestral chromosome reconstruction and novel chromosome nomenclature. ''BMC Biol''. 2023 Nov 20; '''21''' (1):265
Genome-scale metabolic models reveal determinants of phenotypic differences in non-Saccharomyces yeasts. Description: Pettersen, Jakob P, et al. Genome-scale metabolic models reveal determinants of phenotypic differences in non-Saccharomyces yeasts. ''BMC Bioinformatics''. 2023 Nov 21; '''24''' (1):438
Viral Diversity in Benthic Abyssal Ecosystems: Ecological and Methodological Considerations. Description: Rosani, Umberto, et al. Viral Diversity in Benthic Abyssal Ecosystems: Ecological and Methodological Considerations. ''Viruses''. 2023 Nov 21; '''15''' (12):
De novo transcriptome assembly of Dalbergia sissoo Roxb. (Fabaceae) under Botryodiplodia theobromae-induced dieback disease. Description: Zafar, Ummul Buneen, et al. De novo transcriptome assembly of Dalbergia sissoo Roxb. (Fabaceae) under Botryodiplodia theobromae-induced dieback disease. ''Sci Rep''. 2023 Nov 22; '''13''' (1):20503
Monoterpene glucosides in Eustoma grandiflorum roots promote hyphal branching in arbuscular mycorrhizal fungi. Description: Tominaga, Takaya, et al. Monoterpene glucosides in Eustoma grandiflorum roots promote hyphal branching in arbuscular mycorrhizal fungi. ''Plant Physiol''. 2023 Nov 22; '''193''' (4):2677-2690
Subgenome phasing for complex allopolyploidy: case-based benchmarking and recommendations. Description: Zhang, Ren-Gang, et al. Subgenome phasing for complex allopolyploidy: case-based benchmarking and recommendations. ''Brief Bioinform''. 2023 Nov 22; '''25''' (1):
Distributed genotyping and clustering of Neisseria strains reveal continual emergence of epidemic meningococcus over a century. Description: Zhong, Ling, et al. Distributed genotyping and clustering of Neisseria strains reveal continual emergence of epidemic meningococcus over a century. ''Nat Commun''. 2023 Nov 24; '''14''' (1):7706
Learning sequence, structure, and function representations of proteins with language models. Description: Hamamsy, Tymor, et al. Learning sequence, structure, and function representations of proteins with language models. ''bioRxiv''. 2023 Nov 26;
Host translation machinery is not a barrier to phages that interact with both CPR and non-CPR bacteria. Description: Liu, Jett, et al. Host translation machinery is not a barrier to phages that interact with both CPR and non-CPR bacteria. ''mBio''. 2023 Nov 27; '''14''' (6):e0176623
RNA is a key component of extracellular DNA networks in Pseudomonas aeruginosa biofilms. Description: Mugunthan, Sudarsan, et al. RNA is a key component of extracellular DNA networks in Pseudomonas aeruginosa biofilms. ''Nat Commun''. 2023 Nov 27; '''14''' (1):7772
StORF-Reporter: finding genes between genes. Description: Dimonaco, Nicholas J, et al. StORF-Reporter: finding genes between genes. ''Nucleic Acids Res''. 2023 Nov 27; '''51''' (21):11504-11517
Enrichable consortia of microbial symbionts degrade macroalgal polysaccharides in Kyphosus fish. Description: Oliver, Aaron, et al. Enrichable consortia of microbial symbionts degrade macroalgal polysaccharides in Kyphosus fish. ''bioRxiv''. 2023 Nov 28;
iCAZyGFADB: an insect CAZyme and gene function annotation database. Description: iCAZyGFADB: an insect CAZyme and gene function annotation database. ''''. 2023 Nov 28; '''2023''':
Active viral infection during blooms of a dinoflagellate indicates dinoflagellate-viral co-adaptation. Description: Wang, Jingtian, et al. Active viral infection during blooms of a dinoflagellate indicates dinoflagellate-viral co-adaptation. ''Appl Environ Microbiol''. 2023 Nov 29; '''89''' (11):e0115623
Marine toxin domoic acid alters nitrogen cycling in sediments. Description: Li, Zelong, et al. Marine toxin domoic acid alters nitrogen cycling in sediments. ''Nat Commun''. 2023 Nov 30; '''14''' (1):7873
A computational model of Pseudomonas syringae metabolism unveils a role for branched-chain amino acids in Arabidopsis leaf colonization. Description: Tubergen, Philip J, et al. A computational model of Pseudomonas syringae metabolism unveils a role for branched-chain amino acids in Arabidopsis leaf colonization. ''PLoS Comput Biol''. 2023 Dec; '''19''' (12):e1011651
Alterations in gut virome are associated with cognitive function and minimal hepatic encephalopathy cross-sectionally and longitudinally in cirrhosis. Description: Jinato, Thananya, et al. Alterations in gut virome are associated with cognitive function and minimal hepatic encephalopathy cross-sectionally and longitudinally in cirrhosis. ''Gut Microbes''. 2023 Dec; '''15''' (2):2288168
Alterations of milk oligosaccharides in mothers with gestational diabetes mellitus impede colonization of beneficial bacteria and development of RORgammat(+) Treg cell-mediated immune tolerance in neonates. Description: Li, Xinke, et al. Alterations of milk oligosaccharides in mothers with gestational diabetes mellitus impede colonization of beneficial bacteria and development of RORgammat(+) Treg cell-mediated immune tolerance in neonates. ''Gut Microbes''. 2023 Dec; '''15''' (2):2256749
APGW/AKH Precursor from Rotifer Brachionus plicatilis and the DNA Loss Model Explain Evolutionary Trends of the Neuropeptide LWamide, APGWamide, RPCH, AKH, ACP, CRZ, and GnRH Families. Description: Cadena-Caballero, Cristian E, et al. APGW/AKH Precursor from Rotifer Brachionus plicatilis and the DNA Loss Model Explain Evolutionary Trends of the Neuropeptide LWamide, APGWamide, RPCH, AKH, ACP, CRZ, and GnRH Families. ''J Mol Evol''. 2023 Dec; '''91''' (6):882-896
A photobioreactor for production of algae biomass from gaseous emissions of an animal house. Description: Glockow, Till, et al. A photobioreactor for production of algae biomass from gaseous emissions of an animal house. ''Appl Microbiol Biotechnol''. 2023 Dec; '''107''' (24):7673-7684
Dancing the Nanopore limbo - Nanopore metagenomics from small DNA quantities for bacterial genome reconstruction. Description: Simon, Sophie A, et al. Dancing the Nanopore limbo - Nanopore metagenomics from small DNA quantities for bacterial genome reconstruction. ''BMC Genomics''. 2023 Dec 1; '''24''' (1):727
Engraftment of essential functions through multiple fecal microbiota transplants in chronic antibiotic-resistant pouchitis-a case study using metatranscriptomics. Description: Deng, Zhi-Luo, et al. Engraftment of essential functions through multiple fecal microbiota transplants in chronic antibiotic-resistant pouchitis-a case study using metatranscriptomics. ''Microbiome''. 2023 Dec 1; '''11''' (1):269
Escherichia coli triggers alpha-synuclein pathology in the LRRK2 transgenic mouse model of PD. Description: Liang, Dongxiao, et al. Escherichia coli triggers alpha-synuclein pathology in the LRRK2 transgenic mouse model of PD. ''Gut Microbes''. 2023 Dec; '''15''' (2):2276296
Functional characterization and structural basis of a reversible glycosyltransferase involves in plant chemical defence. Description: Cheng, Weijia, et al. Functional characterization and structural basis of a reversible glycosyltransferase involves in plant chemical defence. ''Plant Biotechnol J''. 2023 Dec; '''21''' (12):2611-2624
Gap-free genome assembly and CYP450 gene family analysis reveal the biosynthesis of anthocyanins in Scutellaria baicalensis. Description: Pei, Tianlin, et al. Gap-free genome assembly and CYP450 gene family analysis reveal the biosynthesis of anthocyanins in Scutellaria baicalensis. ''Hortic Res''. 2023 Dec; '''10''' (12):uhad235
Genomic and transcriptomic insights into complex virus-prokaryote interactions in marine biofilms. Description: Zhou, Kun, et al. Genomic and transcriptomic insights into complex virus-prokaryote interactions in marine biofilms. ''ISME J''. 2023 Dec; '''17''' (12):2303-2312
Gut-immunity modulation in Lepidocephalichthys guntea during Aeromonas hydrophila-infection and recovery assessed with transcriptome data. Description: Basak, Chandana, et al. Gut-immunity modulation in Lepidocephalichthys guntea during Aeromonas hydrophila-infection and recovery assessed with transcriptome data. ''Heliyon''. 2023 Dec; '''9''' (12):e22936
IPOP: An Integrative Plant Multi-omics Platform for Cross-species Comparison and Evolutionary Study. Description: Huang, Wenyue, et al. IPOP: An Integrative Plant Multi-omics Platform for Cross-species Comparison and Evolutionary Study. ''Mol Biol Evol''. 2023 Dec 1; '''40''' (12):
Metatranscriptomic responses and microbial degradation of background polycyclic aromatic hydrocarbons in the coastal Mediterranean and Antarctica. Description: Martinez-Varela, Alicia, et al. Metatranscriptomic responses and microbial degradation of background polycyclic aromatic hydrocarbons in the coastal Mediterranean and Antarctica. ''Environ Sci Pollut Res Int''. 2023 Dec; '''30''' (57):119988-119999
Microbial drivers of DMSO reduction and DMS-dependent methanogenesis in saltmarsh sediments. Description: Tebbe, Dennis Alexander, et al. Microbial drivers of DMSO reduction and DMS-dependent methanogenesis in saltmarsh sediments. ''ISME J''. 2023 Dec; '''17''' (12):2340-2351
Molecular insights into titin's A-band. Description: Fleming, Jennifer R, et al. Molecular insights into titin's A-band. ''J Muscle Res Cell Motil''. 2023 Dec; '''44''' (4):255-270
Patchwork: Alignment-Based Retrieval and Concatenation of Phylogenetic Markers from Genomic Data. Description: Thalen, Felix, et al. Patchwork: Alignment-Based Retrieval and Concatenation of Phylogenetic Markers from Genomic Data. ''Genome Biol Evol''. 2023 Dec 1; '''15''' (12):
PhosBoost: Improved phosphorylation prediction recall using gradient boosting and protein language models. Description: Poretsky, Elly, et al. PhosBoost: Improved phosphorylation prediction recall using gradient boosting and protein language models. ''Plant Direct''. 2023 Dec; '''7''' (12):e554
Reversible aberrancies in gut microbiome of moderate and late preterm infants: results from a randomized, controlled trial. Description: Luoto, Raakel, et al. Reversible aberrancies in gut microbiome of moderate and late preterm infants: results from a randomized, controlled trial. ''Gut Microbes''. 2023 Dec; '''15''' (2):2283913
Single-cell transcriptomics reveals the brain evolution of web-building spiders. Description: Jin, Pengyu, et al. Single-cell transcriptomics reveals the brain evolution of web-building spiders. ''Nat Ecol Evol''. 2023 Dec; '''7''' (12):2125-2142
The assessment on cross immunity with smallpox virus and antiviral drug sensitivity of the isolated mpox virus strain WIBP-MPXV-001 in China. Description: Zeng, Yan, et al. The assessment on cross immunity with smallpox virus and antiviral drug sensitivity of the isolated mpox virus strain WIBP-MPXV-001 in China. ''Emerg Microbes Infect''. 2023 Dec; '''12''' (1):2208682
The diversity and ecological significance of microbial traits potentially involved in B(12) biosynthesis in the global ocean. Description: Zhou, Jiayin, et al. The diversity and ecological significance of microbial traits potentially involved in B(12) biosynthesis in the global ocean. ''mLife''. 2023 Dec; '''2''' (4):416-427
The gut microbiome and metabolome in kidney transplant recipients with normal and moderately decreased kidney function. Description: Lan, Yang, et al. The gut microbiome and metabolome in kidney transplant recipients with normal and moderately decreased kidney function. ''Ren Fail''. 2023 Dec; '''45''' (1):2228419
The highly improved genome of Ixodes scapularis with X and Y pseudochromosomes. Description: The highly improved genome of Ixodes scapularis with X and Y pseudochromosomes. ''''. 2023 Dec; '''6''' (12):
Topological data analysis reveals a core gene expression backbone that defines form and function across flowering plants. Description: Palande, Sourabh, et al. Topological data analysis reveals a core gene expression backbone that defines form and function across flowering plants. ''PLoS Biol''. 2023 Dec; '''21''' (12):e3002397
Transcriptomic analysis reveals candidate genes associated with salinity stress tolerance during the early vegetative stage in fababean genotype, Hassawi-2. Description: Afzal, Muhammad, et al. Transcriptomic analysis reveals candidate genes associated with salinity stress tolerance during the early vegetative stage in fababean genotype, Hassawi-2. ''Sci Rep''. 2023 Dec 1; '''13''' (1):21223
The genomes of Scedosporium between environmental challenges and opportunism. Description: Venice, Francesco, et al. The genomes of Scedosporium between environmental challenges and opportunism. ''IMA Fungus''. 2023 Dec 4; '''14''' (1):25
A large-scale genomically predicted protein mass database enables rapid and broad-spectrum identification of bacterial and archaeal isolates by mass spectrometry. Description: Sekiguchi, Yuji, et al. A large-scale genomically predicted protein mass database enables rapid and broad-spectrum identification of bacterial and archaeal isolates by mass spectrometry. ''Genome Biol''. 2023 Dec 5; '''24''' (1):257
Imaging tumor lactate is feasible for identifying intermediate-risk prostate cancer patients with postsurgical biochemical recurrence. Description: Sushentsev, Nikita, et al. Imaging tumor lactate is feasible for identifying intermediate-risk prostate cancer patients with postsurgical biochemical recurrence. ''Proc Natl Acad Sci U S A''. 2023 Dec 5; '''120''' (49):e2312261120
Microbiota configuration determines nutritional immune optimization. Description: Han, Seong-Ji, et al. Microbiota configuration determines nutritional immune optimization. ''Proc Natl Acad Sci U S A''. 2023 Dec 5; '''120''' (49):e2304905120
Repeated exposure of wheat to the fungal root pathogen Bipolaris sorokiniana modulates rhizosphere microbiome assembly and disease suppressiveness. Description: Costa, Lilian S Abreu Soares, et al. Repeated exposure of wheat to the fungal root pathogen Bipolaris sorokiniana modulates rhizosphere microbiome assembly and disease suppressiveness. ''Environ Microbiome''. 2023 Dec 5; '''18''' (1):85
Strategies of chemolithoautotrophs adapting to high temperature and extremely acidic conditions in a shallow hydrothermal ecosystem. Description: Deng, Wenchao, et al. Strategies of chemolithoautotrophs adapting to high temperature and extremely acidic conditions in a shallow hydrothermal ecosystem. ''Microbiome''. 2023 Dec 5; '''11''' (1):270
A reference genome for the long-term kleptoplast-retaining sea slug Elysia crispata morphotype clarki. Description: Eastman, Katharine E, et al. A reference genome for the long-term kleptoplast-retaining sea slug Elysia crispata morphotype clarki. ''G3 (Bethesda)''. 2023 Dec 6; '''13''' (12):
Comparative transcriptomics reveals divergence in pathogen response gene families amongst 20 forest tree species. Description: Lu, Mengmeng, et al. Comparative transcriptomics reveals divergence in pathogen response gene families amongst 20 forest tree species. ''G3 (Bethesda)''. 2023 Dec 6; '''13''' (12):
The MetaInvert soil invertebrate genome resource provides insights into below-ground biodiversity and evolution. Description: Collins, Gemma, et al. The MetaInvert soil invertebrate genome resource provides insights into below-ground biodiversity and evolution. ''Commun Biol''. 2023 Dec 8; '''6''' (1):1241
Pathogen Eradication in Garlic in the Phytobiome Context: Should We Aim for Complete Cleaning? Description: Yarmus, Itay, et al. Pathogen Eradication in Garlic in the Phytobiome Context: Should We Aim for Complete Cleaning? ''Plants (Basel)''. 2023 Dec 10; '''12''' (24):
Sequencing and Analysis of the Mitochondrial Genome of Aedes aegypti (Diptera: Culicidae) from the Brazilian Amazon Region. Description: Sousa, Andrelina Alves de, et al. Sequencing and Analysis of the Mitochondrial Genome of Aedes aegypti (Diptera: Culicidae) from the Brazilian Amazon Region. ''Insects''. 2023 Dec 11; '''14''' (12):
Deciphering the molecular components of the quorum sensing system in the fungus Ophiostoma piceae. Description: Santos-Pascual, Rodrigo, et al. Deciphering the molecular components of the quorum sensing system in the fungus Ophiostoma piceae. ''Microbiol Spectr''. 2023 Dec 12; '''11''' (6):e0029023
Genetic diversity and characterization of rhinoviruses from Chinese clinical samples with a global perspective. Description: Zhao, Peng, et al. Genetic diversity and characterization of rhinoviruses from Chinese clinical samples with a global perspective. ''Microbiol Spectr''. 2023 Dec 12; '''11''' (6):e0084023
Phylogenomic analysis of the understudied Neisseriaceae species reveals a poly- and paraphyletic Kingella genus. Description: Morreale, Daniel P, et al. Phylogenomic analysis of the understudied Neisseriaceae species reveals a poly- and paraphyletic Kingella genus. ''Microbiol Spectr''. 2023 Dec 12; '''11''' (6):e0312323
Resolving the phylogeny of Thladiantha (Cucurbitaceae) with three different target capture pipelines. Description: Raza, Mustafa, et al. Resolving the phylogeny of Thladiantha (Cucurbitaceae) with three different target capture pipelines. ''BMC Ecol Evol''. 2023 Dec 12; '''23''' (1):75
Rice bacterial leaf blight drives rhizosphere microbial assembly and function adaptation. Description: Jiang, Hubiao, et al. Rice bacterial leaf blight drives rhizosphere microbial assembly and function adaptation. ''Microbiol Spectr''. 2023 Dec 12; '''11''' (6):e0105923
RNA virus diversity in three parasitoid wasps of tephritid flies: insights from novel and known species. Description: Zhang, Wei, et al. RNA virus diversity in three parasitoid wasps of tephritid flies: insights from novel and known species. ''Microbiol Spectr''. 2023 Dec 12; '''11''' (6):e0313923
The genomic and epidemiological investigations of enteric viruses of domestic caprine (Capra hircus) revealed the presence of multiple novel viruses related to known strains of humans and ruminant livestock species. Description: Boros, Akos, et al. The genomic and epidemiological investigations of enteric viruses of domestic caprine (Capra hircus) revealed the presence of multiple novel viruses related to known strains of humans and ruminant livestock species. ''Microbiol Spectr''. 2023 Dec 12; '''11''' (6):e0253323
Phylogeography of Two Enigmatic Sulphur Butterflies, Colias mongola Alpheraky, 1897 and Colias tamerlana Staudinger, 1897 (Lepidoptera, Pieridae), with Relations to Wolbachia Infection. Description: Shapoval, Nazar A, et al. Phylogeography of Two Enigmatic Sulphur Butterflies, Colias mongola Alpheraky, 1897 and Colias tamerlana Staudinger, 1897 (Lepidoptera, Pieridae), with Relations to Wolbachia Infection. ''Insects''. 2023 Dec 13; '''14''' (12):
Ceratobasidium sp. is associated with cassava witches' broom disease, a re-emerging threat to cassava cultivation in Southeast Asia. Description: Leiva, Ana M, et al. Ceratobasidium sp. is associated with cassava witches' broom disease, a re-emerging threat to cassava cultivation in Southeast Asia. ''Sci Rep''. 2023 Dec 15; '''13''' (1):22500
Chromosome-level genome assembly of the Stoliczka's Asian trident bat (Aselliscus stoliczkanus). Description: Lan, Linjing, et al. Chromosome-level genome assembly of the Stoliczka's Asian trident bat (Aselliscus stoliczkanus). ''Sci Data''. 2023 Dec 15; '''10''' (1):902
Exploring the Diversity of Plant-Associated Viruses and Related Viruses in Riverine Freshwater Samples Collected in Berlin, Germany. Description: Zell, Roland, et al. Exploring the Diversity of Plant-Associated Viruses and Related Viruses in Riverine Freshwater Samples Collected in Berlin, Germany. ''Pathogens''. 2023 Dec 15; '''12''' (12):
Haplotype-resolved chromosomal-level genome assembly of Buzhaye (Microcos paniculata). Description: Liu, Detuan, et al. Haplotype-resolved chromosomal-level genome assembly of Buzhaye (Microcos paniculata). ''Sci Data''. 2023 Dec 15; '''10''' (1):901
Integrated metabolome and transcriptome analyses of anthocyanin biosynthesis reveal key candidate genes involved in colour variation of Scutellaria baicalensis flowers. Description: Guo, Fengdan, et al. Integrated metabolome and transcriptome analyses of anthocyanin biosynthesis reveal key candidate genes involved in colour variation of Scutellaria baicalensis flowers. ''BMC Plant Biol''. 2023 Dec 15; '''23''' (1):643
Simulated spaceflight-induced cardiac remodeling is modulated by gut microbial-derived trimethylamine N-oxide. Description: Liu, Zizhong, et al. Simulated spaceflight-induced cardiac remodeling is modulated by gut microbial-derived trimethylamine N-oxide. ''iScience''. 2023 Dec 15; '''26''' (12):108556
The Natural Products Discovery Center: Release of the First 8490 Sequenced Strains for Exploring Actinobacteria Biosynthetic Diversity. Description: Kalkreuter, Edward, et al. The Natural Products Discovery Center: Release of the First 8490 Sequenced Strains for Exploring Actinobacteria Biosynthetic Diversity. ''bioRxiv''. 2023 Dec 15;
The Viromes of Six Ecosystem Service Provider Parasitoid Wasps. Description: Caldas-Garcia, Gabriela B, et al. The Viromes of Six Ecosystem Service Provider Parasitoid Wasps. ''Viruses''. 2023 Dec 16; '''15''' (12):
Strain-level characterization of health-associated bacterial consortia that colonize the human gut during infancy. Description: Minot, Samuel S, et al. Strain-level characterization of health-associated bacterial consortia that colonize the human gut during infancy. ''medRxiv''. 2023 Dec 17;
Evolution and ecology of Jeilongvirus among wild rodents and shrews in Singapore. Description: Ch'ng, Lena, et al. Evolution and ecology of Jeilongvirus among wild rodents and shrews in Singapore. ''One Health Outlook''. 2023 Dec 18; '''5''' (1):19
Compositional and functional changes in the salivary microbiota related to oral leukoplakia and oral squamous cell carcinoma: a case control study. Description: Lan, Qingying, et al. Compositional and functional changes in the salivary microbiota related to oral leukoplakia and oral squamous cell carcinoma: a case control study. ''BMC Oral Health''. 2023 Dec 19; '''23''' (1):1021
Identification of Incomplete Annotations of Biosynthesis Pathways in Rhodophytes Using a Multi-Omics Approach. Description: McKinnie, Lachlan J, et al. Identification of Incomplete Annotations of Biosynthesis Pathways in Rhodophytes Using a Multi-Omics Approach. ''Mar Drugs''. 2023 Dec 19; '''22''' (1):
Gut microbiota affects the estrus return of sows by regulating the metabolism of sex steroid hormones. Description: Liu, Min, et al. Gut microbiota affects the estrus return of sows by regulating the metabolism of sex steroid hormones. ''J Anim Sci Biotechnol''. 2023 Dec 20; '''14''' (1):155
Defining microbial community functions in chronic human infection with metatranscriptomics. Description: Adekoya, Aanuoluwa E, et al. Defining microbial community functions in chronic human infection with metatranscriptomics. ''mSystems''. 2023 Dec 21; '''8''' (6):e0059323
Landscape of gut microbiota and metabolites and their interaction in comorbid heart failure and depressive symptoms: a random forest analysis study. Description: Huang, Kai, et al. Landscape of gut microbiota and metabolites and their interaction in comorbid heart failure and depressive symptoms: a random forest analysis study. ''mSystems''. 2023 Dec 21; '''8''' (6):e0051523
MarFERReT, an open-source, version-controlled reference library of marine microbial eukaryote functional genes. Description: Groussman, R D, et al. MarFERReT, an open-source, version-controlled reference library of marine microbial eukaryote functional genes. ''Sci Data''. 2023 Dec 21; '''10''' (1):926
Natural product biosynthetic potential reflects macroevolutionary diversification within a widely distributed bacterial taxon. Description: Silva, Sandra Godinho, et al. Natural product biosynthetic potential reflects macroevolutionary diversification within a widely distributed bacterial taxon. ''mSystems''. 2023 Dec 21; '''8''' (6):e0064323
Phosphate-related genomic islands as drivers of environmental adaptation in the streamlined marine alphaproteobacterial HIMB59. Description: Molina-Pardines, Carmen, et al. Phosphate-related genomic islands as drivers of environmental adaptation in the streamlined marine alphaproteobacterial HIMB59. ''mSystems''. 2023 Dec 21; '''8''' (6):e0089823
Pegivirus Detection in Cerebrospinal Fluid from Patients with Central Nervous System Infections of Unknown Etiology in Brazil by Viral Metagenomics. Description: Carmona, Rita de Cassia Compagnoli, et al. Pegivirus Detection in Cerebrospinal Fluid from Patients with Central Nervous System Infections of Unknown Etiology in Brazil by Viral Metagenomics. ''Microorganisms''. 2023 Dec 22; '''12''' (1):
Prediction and characterization of prophages of Stenotrophomonas maltophilia reveals a remarkable phylogenetic diversity of prophages. Description: Fang, Zheng, et al. Prediction and characterization of prophages of Stenotrophomonas maltophilia reveals a remarkable phylogenetic diversity of prophages. ''Sci Rep''. 2023 Dec 22; '''13''' (1):22941
Interspecies Papillomavirus Type Infection and a Novel Papillomavirus Type in Red Ruffed Lemurs (Varecia rubra). Description: Paietta, Elise N, et al. Interspecies Papillomavirus Type Infection and a Novel Papillomavirus Type in Red Ruffed Lemurs (Varecia rubra). ''Viruses''. 2023 Dec 25; '''16''' (1):
A transcriptional program underlying the circannual rhythms of gonadal development in medaka. Description: Nakayama, Tomoya, et al. A transcriptional program underlying the circannual rhythms of gonadal development in medaka. ''Proc Natl Acad Sci U S A''. 2023 Dec 26; '''120''' (52):e2313514120
Comparative Rumen Metagenome and CAZyme Profiles in Cattle and Buffaloes: Implications for Methane Yield and Rumen Fermentation on a Common Diet. Description: Malik, Pradeep K, et al. Comparative Rumen Metagenome and CAZyme Profiles in Cattle and Buffaloes: Implications for Methane Yield and Rumen Fermentation on a Common Diet. ''Microorganisms''. 2023 Dec 27; '''12''' (1):
The Extent of Edgetic Perturbations in the Human Interactome Caused by Population-Specific Mutations. Description: Cui, Hongzhu, et al. The Extent of Edgetic Perturbations in the Human Interactome Caused by Population-Specific Mutations. ''Biomolecules''. 2023 Dec 27; '''14''' (1):
Thermally Stable Terbium(II) and Dysprosium(II) Bis-amidinate Complexes. Description: Jin, Peng-Bo, et al. Thermally Stable Terbium(II) and Dysprosium(II) Bis-amidinate Complexes. ''J Am Chem Soc''. 2023 Dec 27; '''145''' (51):27993-28009
Whole-genome sequence of the Cooley spruce gall adelgid, Adelges cooleyi (Hemiptera: Sternorrhyncha: Adelgidae). Description: Dial, Dustin T, et al. Whole-genome sequence of the Cooley spruce gall adelgid, Adelges cooleyi (Hemiptera: Sternorrhyncha: Adelgidae). ''G3 (Bethesda)''. 2023 Dec 29; '''14''' (1):
First Contiguous Genome Assembly of Japanese Lady Bell (Adenophora triphylla) and Insights into Development of Different Leaf Types. Description: Kang, Ji-Nam, et al. First Contiguous Genome Assembly of Japanese Lady Bell (Adenophora triphylla) and Insights into Development of Different Leaf Types. ''Genes (Basel)''. 2023 Dec 30; '''15''' (1):
Faecal Microbiota transplantation affects liver DNA methylation in Non-alcoholic fatty liver disease: a multi-omics approach. Description: Stols-Goncalves, Daniela, et al. Faecal Microbiota transplantation affects liver DNA methylation in Non-alcoholic fatty liver disease: a multi-omics approach. ''Gut Microbes''. 2023 Dec 31; '''15''' (1):2223330
Active microbiota persist in dry permafrost and active layer from Elephant Head, Antarctica. Description: Wood, Claudia, et al. Active microbiota persist in dry permafrost and active layer from Elephant Head, Antarctica. ''ISME Commun''. 2024 Jan; '''4''' (1):ycad002
Air monitoring by nanopore sequencing. Description: Reska, Tim, et al. Air monitoring by nanopore sequencing. ''ISME Commun''. 2024 Jan; '''4''' (1):ycae099
A metatranscriptomics strategy for efficient characterization of the microbiome in human tissues with low microbial biomass. Description: Pereira-Marques, Joana, et al. A metatranscriptomics strategy for efficient characterization of the microbiome in human tissues with low microbial biomass. ''Gut Microbes''. 2024 Jan-Dec; '''16''' (1):2323235
AmiR-P3: An AI-based microRNA prediction pipeline in plants. Description: Ataei, Sobhan, et al. AmiR-P3: An AI-based microRNA prediction pipeline in plants. ''PLoS One''. 2024; '''19''' (8):e0308016
A mysterious cloak: the peptidoglycan layer of algal and plant plastids. Description: MacLeod, Alexander I, et al. A mysterious cloak: the peptidoglycan layer of algal and plant plastids. ''Protoplasma''. 2024 Jan; '''261''' (1):173-178
An insight into the vaginal microbiome of infertile women in Bangladesh using metagenomic approach. Description: Hasan, Zahid, et al. An insight into the vaginal microbiome of infertile women in Bangladesh using metagenomic approach. ''Front Cell Infect Microbiol''. 2024; '''14''': 1390088
Antarctic lake viromes reveal potential virus associated influences on nutrient cycling in ice-covered lakes. Description: Robinson, David, et al. Antarctic lake viromes reveal potential virus associated influences on nutrient cycling in ice-covered lakes. ''Front Microbiol''. 2024; '''15''': 1422941
APH(3')-Ie, an aminoglycoside-modifying enzyme discovered in a rabbit-derived Citrobacter gillenii isolate. Description: Lin, Naru, et al. APH(3')-Ie, an aminoglycoside-modifying enzyme discovered in a rabbit-derived Citrobacter gillenii isolate. ''Front Cell Infect Microbiol''. 2024; '''14''': 1435123
A PLA2 deletion mutant using CRISPR/Cas9 coupled to RNASeq reveals insect immune genes associated with eicosanoid signaling. Description: Vatanparast, Mohammad, et al. A PLA2 deletion mutant using CRISPR/Cas9 coupled to RNASeq reveals insect immune genes associated with eicosanoid signaling. ''PLoS One''. 2024; '''19''' (7):e0304958
A targeted approach to enrich host-associated bacteria for metagenomic sequencing. Description: Dungan, Ashley M, et al. A targeted approach to enrich host-associated bacteria for metagenomic sequencing. ''FEMS Microbes''. 2024; '''5''': xtad021
Bacteroidia and Clostridia are equipped to degrade a cascade of polysaccharides along the hindgut of the herbivorous fish Kyphosus sydneyanus. Description: Facimoto, Cesar T, et al. Bacteroidia and Clostridia are equipped to degrade a cascade of polysaccharides along the hindgut of the herbivorous fish Kyphosus sydneyanus. ''ISME Commun''. 2024 Jan; '''4''' (1):ycae102
Bridging integrator 1 fragment accelerates tau aggregation and propagation by enhancing clathrin-mediated endocytosis in mice. Description: Zhang, Xingyu, et al. Bridging integrator 1 fragment accelerates tau aggregation and propagation by enhancing clathrin-mediated endocytosis in mice. ''PLoS Biol''. 2024 Jan; '''22''' (1):e3002470
Characterization of a broad-spectrum antifungal strain, Streptomyces graminearus STR-1, against Magnaporthe oryzae. Description: Shen, Wenyuan, et al. Characterization of a broad-spectrum antifungal strain, Streptomyces graminearus STR-1, against Magnaporthe oryzae. ''Front Microbiol''. 2024; '''15''': 1298781
Characterizing the gut microbiome of diarrheal mink under farmed conditions: A metagenomic analysis. Description: Liu, Shuo, et al. Characterizing the gut microbiome of diarrheal mink under farmed conditions: A metagenomic analysis. ''PLoS One''. 2024; '''19''' (10):e0312821
Chromosome-level genome assemblies for two quinoa inbred lines from northern and southern highlands of Altiplano where quinoa originated. Description: Kobayashi, Yasufumi, et al. Chromosome-level genome assemblies for two quinoa inbred lines from northern and southern highlands of Altiplano where quinoa originated. ''Front Plant Sci''. 2024; '''15''': 1434388
Comparative genomics between Trichomonas tenax and Trichomonas vaginalis: CAZymes and candidate virulence factors. Description: Mpeyako, Lenshina A, et al. Comparative genomics between Trichomonas tenax and Trichomonas vaginalis: CAZymes and candidate virulence factors. ''Front Microbiol''. 2024; '''15''': 1437572
Comparative metagenomic analysis of microbial community compositions and functions in cage aquaculture and its nearby non-aquaculture environments. Description: Liu, Zetian, et al. Comparative metagenomic analysis of microbial community compositions and functions in cage aquaculture and its nearby non-aquaculture environments. ''Front Microbiol''. 2024; '''15''': 1398005
Comparative transcriptome and metabolome analysis revealed diversity in the response of resistant and susceptible rose (Rosa hybrida) varieties to Marssonina rosae. Description: Song, Jurong, et al. Comparative transcriptome and metabolome analysis revealed diversity in the response of resistant and susceptible rose (Rosa hybrida) varieties to Marssonina rosae. ''Front Plant Sci''. 2024; '''15''': 1362287
Comprehensive genome sequence analysis of Ralstonia solanacearum gd-2, a phylotype I sequevar 15 strain collected from a tobacco bacterial phytopathogen. Description: Xiao, Zhiliang, et al. Comprehensive genome sequence analysis of Ralstonia solanacearum gd-2, a phylotype I sequevar 15 strain collected from a tobacco bacterial phytopathogen. ''Front Microbiol''. 2024; '''15''': 1335081
Cross-protection induced by highly conserved human B, CD4(+), and CD8(+) T-cell epitopes-based vaccine against severe infection, disease, and death caused by multiple SARS-CoV-2 variants of concern. Description: Prakash, Swayam, et al. Cross-protection induced by highly conserved human B, CD4(+), and CD8(+) T-cell epitopes-based vaccine against severe infection, disease, and death caused by multiple SARS-CoV-2 variants of concern. ''Front Immunol''. 2024; '''15''': 1328905
De novo transcriptome assembly and genome annotation of the fat-tailed dunnart (Sminthopsis crassicaudata). Description: Ibeh, Neke, et al. De novo transcriptome assembly and genome annotation of the fat-tailed dunnart (Sminthopsis crassicaudata). ''GigaByte''. 2024; '''2024''': gigabyte118
Development of SSR markers for genetic diversity analysis and species identification in Polygonatum odoratum (Mill.) Druce based on transcriptome sequences. Description: Pan, Gen, et al. Development of SSR markers for genetic diversity analysis and species identification in Polygonatum odoratum (Mill.) Druce based on transcriptome sequences. ''PLoS One''. 2024; '''19''' (9):e0308316
Dickeya fangzhongdai was prevalent and caused taro soft rot when coexisting with the Pectobacterium complex, with a preference for Araceae plants. Description: Zhang, Jingxin, et al. Dickeya fangzhongdai was prevalent and caused taro soft rot when coexisting with the Pectobacterium complex, with a preference for Araceae plants. ''Front Microbiol''. 2024; '''15''': 1431047
Differential effects of domesticated and wild Capsicum frutescens L. on microbial community assembly and metabolic functions in rhizosphere soil. Description: Wang, Can, et al. Differential effects of domesticated and wild Capsicum frutescens L. on microbial community assembly and metabolic functions in rhizosphere soil. ''Front Microbiol''. 2024; '''15''': 1383526
Disentangle beneficial effects of strain engraftment after fecal microbiota transplantation in subjects with MetSyn. Description: van der Vossen, Eduard W J, et al. Disentangle beneficial effects of strain engraftment after fecal microbiota transplantation in subjects with MetSyn. ''Gut Microbes''. 2024 Jan-Dec; '''16''' (1):2388295
Effect of intestinal microbiota transplantation on chronic hepatitis B virus infection associated liver disease. Description: Deng, Lisi, et al. Effect of intestinal microbiota transplantation on chronic hepatitis B virus infection associated liver disease. ''Front Microbiol''. 2024; '''15''': 1458754
Effects of concentrate feeding sequence on VFA production, and cecal microbiota of Dezhou donkeys by metagenomic technology. Description: Cai, Changyun, et al. Effects of concentrate feeding sequence on VFA production, and cecal microbiota of Dezhou donkeys by metagenomic technology. ''Front Vet Sci''. 2024; '''11''': 1401980
Effects of elicitors from culture filtrate of Fusarium solani CL105 on flavonoid production of Scutellaria baicalensis calli. Description: Cui, Xiaoxuan, et al. Effects of elicitors from culture filtrate of Fusarium solani CL105 on flavonoid production of Scutellaria baicalensis calli. ''Front Plant Sci''. 2024; '''15''': 1383918
Effects of Glucagon-Like Peptide-1 Receptor Agonists on Gut Microbiota in Dehydroepiandrosterone-Induced Polycystic Ovary Syndrome Mice: Compared Evaluation of Liraglutide and Semaglutide Intervention. Description: Xiong, Chuanhao, et al. Effects of Glucagon-Like Peptide-1 Receptor Agonists on Gut Microbiota in Dehydroepiandrosterone-Induced Polycystic Ovary Syndrome Mice: Compared Evaluation of Liraglutide and Semaglutide Intervention. ''Diabetes Metab Syndr Obes''. 2024; '''17''': 865-880
Effects of postbiotics on chronic diarrhea in young adults: a randomized, double-blind, placebo-controlled crossover trial assessing clinical symptoms, gut microbiota, and metabolite profiles. Description: Guo, Shuai, et al. Effects of postbiotics on chronic diarrhea in young adults: a randomized, double-blind, placebo-controlled crossover trial assessing clinical symptoms, gut microbiota, and metabolite profiles. ''Gut Microbes''. 2024 Jan-Dec; '''16''' (1):2395092
Enhancing transcriptome analysis in medicinal plants: multiple unigene sets in Astragalus membranaceus. Description: Kang, Ji-Nam, et al. Enhancing transcriptome analysis in medicinal plants: multiple unigene sets in Astragalus membranaceus. ''Front Plant Sci''. 2024; '''15''': 1301526
Enriched rhizospheric functional microbiome may enhance adaptability of Artemisia lavandulaefolia and Betula luminifera in antimony mining areas. Description: Xing, Wenli, et al. Enriched rhizospheric functional microbiome may enhance adaptability of Artemisia lavandulaefolia and Betula luminifera in antimony mining areas. ''Front Microbiol''. 2024; '''15''': 1348054
Escherichia coli in urban marine sediments: interpreting virulence, biofilm formation, halotolerance, and antibiotic resistance to infer contamination or naturalization. Description: Erb, Isabel K, et al. Escherichia coli in urban marine sediments: interpreting virulence, biofilm formation, halotolerance, and antibiotic resistance to infer contamination or naturalization. ''FEMS Microbes''. 2024; '''5''': xtae024
Exploring the allelopathic autotoxicity mechanism of ginsenosides accumulation under ginseng decomposition based on integrated analysis of transcriptomics and metabolomics. Description: Wang, Rui, et al. Exploring the allelopathic autotoxicity mechanism of ginsenosides accumulation under ginseng decomposition based on integrated analysis of transcriptomics and metabolomics. ''Front Bioeng Biotechnol''. 2024; '''12''': 1365229
Exploring the evolution of CHS gene family in plants. Description: Yang, Li, et al. Exploring the evolution of CHS gene family in plants. ''Front Genet''. 2024; '''15''': 1368358
FastProtein-an automated software for in silico proteomic analysis. Description: Moreira, Renato Simoes, et al. FastProtein-an automated software for in silico proteomic analysis. ''PeerJ''. 2024; '''12''': e18309
Field application of de novo transcriptomic analysis to evaluate the effects of sublethal freshwater salinization on Gasterosteus aculeatus in urban streams. Description: Escobar-Sierra, Camilo, et al. Field application of de novo transcriptomic analysis to evaluate the effects of sublethal freshwater salinization on Gasterosteus aculeatus in urban streams. ''PLoS One''. 2024; '''19''' (3):e0298213
Formation of Biogenic Manganese Oxide Nodules on Hyphae of a New Fungal Isolate of Periconia That Immobilizes Aqueous Copper. Description: Tsushima, Shihori, et al. Formation of Biogenic Manganese Oxide Nodules on Hyphae of a New Fungal Isolate of Periconia That Immobilizes Aqueous Copper. ''Microbes Environ''. 2024; '''39''' (2):
Functional analysis of microorganisms and metabolites in the cecum of different sheep populations and their effects on production traits. Description: Meng, Quanlu, et al. Functional analysis of microorganisms and metabolites in the cecum of different sheep populations and their effects on production traits. ''Front Microbiol''. 2024; '''15''': 1437250
Genome sequencing and CAZymes repertoire analysis of Diaporthe eres P3-1W causing postharvest fruit rot of 'Hongyang' kiwifruit in China. Description: Ling, Li-Zhen, et al. Genome sequencing and CAZymes repertoire analysis of Diaporthe eres P3-1W causing postharvest fruit rot of 'Hongyang' kiwifruit in China. ''PeerJ''. 2024; '''12''': e17715
Genomic and ecological approaches to identify the Bifidobacterium breve prototype of the healthy human gut microbiota. Description: Argentini, Chiara, et al. Genomic and ecological approaches to identify the Bifidobacterium breve prototype of the healthy human gut microbiota. ''Front Microbiol''. 2024; '''15''': 1349391
Genomic and functional diversity of the human-derived isolates of Faecalibacterium. Description: Li, Wenxi, et al. Genomic and functional diversity of the human-derived isolates of Faecalibacterium. ''Front Microbiol''. 2024; '''15''': 1379500
Genomic and phenotypic characterization of 26 novel marine bacterial strains with relevant biogeochemical roles and widespread presence across the global ocean. Description: Rey-Velasco, Xavier, et al. Genomic and phenotypic characterization of 26 novel marine bacterial strains with relevant biogeochemical roles and widespread presence across the global ocean. ''Front Microbiol''. 2024; '''15''': 1407904
Genomic characterisation and ecological distribution of Mantoniella tinhauana: a novel Mamiellophycean green alga from the Western Pacific. Description: Rey Redondo, Elvira, et al. Genomic characterisation and ecological distribution of Mantoniella tinhauana: a novel Mamiellophycean green alga from the Western Pacific. ''Front Microbiol''. 2024; '''15''': 1358574
Genomic insights into Dactylosporangium sp. AC04546, a rubber degrader with three latex clearing proteins. Description: Basik, Ann Anni, et al. Genomic insights into Dactylosporangium sp. AC04546, a rubber degrader with three latex clearing proteins. ''Front Microbiol''. 2024; '''15''': 1378082
Gonadal transcriptome sequencing reveals sexual dimorphism in expression profiling of sex-related genes in Asian arowana (Scleropages formosus). Description: Zhao, Chenxi, et al. Gonadal transcriptome sequencing reveals sexual dimorphism in expression profiling of sex-related genes in Asian arowana (Scleropages formosus). ''Front Genet''. 2024; '''15''': 1381832
Graphene promotes the growth of Vigna angularis by regulating the nitrogen metabolism and photosynthesis. Description: Qiao, Jun, et al. Graphene promotes the growth of Vigna angularis by regulating the nitrogen metabolism and photosynthesis. ''PLoS One''. 2024; '''19''' (3):e0297892
Gut microbiota depletion delays somatic peripheral nerve development and impairs neuromuscular junction maturation. Description: Cescon, Matilde, et al. Gut microbiota depletion delays somatic peripheral nerve development and impairs neuromuscular junction maturation. ''Gut Microbes''. 2024 Jan-Dec; '''16''' (1):2363015
Gut microbiota-mediated C-sulfonate metabolism impairs the bioavailability and anti-cholestatic efficacy of andrographolide. Description: Tang, Dafu, et al. Gut microbiota-mediated C-sulfonate metabolism impairs the bioavailability and anti-cholestatic efficacy of andrographolide. ''Gut Microbes''. 2024 Jan-Dec; '''16''' (1):2387402
High concentrate diets altered the structure and function of rumen microbiome in goats. Description: Mao, Jinju, et al. High concentrate diets altered the structure and function of rumen microbiome in goats. ''Front Microbiol''. 2024; '''15''': 1416883
High Frankia abundance and low diversity of microbial community are associated with nodulation specificity and stability of sea buckthorn root nodule. Description: Liu, Hong, et al. High Frankia abundance and low diversity of microbial community are associated with nodulation specificity and stability of sea buckthorn root nodule. ''Front Plant Sci''. 2024; '''15''': 1301447
High-pressure high-temperature synthesis of NdRe(2). Description: Hussein, Zain, et al. High-pressure high-temperature synthesis of NdRe(2). ''Front Chem''. 2024; '''12''': 1259032
Horizontal gene transfer in plant microbiomes: integrons as hotspots for cross-species gene exchange. Description: Ghaly, Timothy M, et al. Horizontal gene transfer in plant microbiomes: integrons as hotspots for cross-species gene exchange. ''Front Microbiol''. 2024; '''15''': 1338026
Host influence on the eukaryotic virome of sympatric mosquitoes and abundance of diverse viruses with a broad host range. Description: Morel, Come, et al. Host influence on the eukaryotic virome of sympatric mosquitoes and abundance of diverse viruses with a broad host range. ''PLoS One''. 2024; '''19''' (4):e0300915
Identification and classification of the genomes of novel microviruses in poultry slaughterhouse. Description: Xie, Keming, et al. Identification and classification of the genomes of novel microviruses in poultry slaughterhouse. ''Front Microbiol''. 2024; '''15''': 1393153
Identification of complex III, NQR, and SDH as primary bioenergetic enzymes during the stationary phase of Pseudomonas aeruginosa cultured in urine-like conditions. Description: Hu, Yuyao, et al. Identification of complex III, NQR, and SDH as primary bioenergetic enzymes during the stationary phase of Pseudomonas aeruginosa cultured in urine-like conditions. ''Front Microbiol''. 2024; '''15''': 1347466
Identification of core genes involved in the response of Apocynum venetum to salt stress based on transcriptome sequencing and WGCNA. Description: Zhen, Xi, et al. Identification of core genes involved in the response of Apocynum venetum to salt stress based on transcriptome sequencing and WGCNA. ''PLoS One''. 2024; '''19''' (4):e0300277
Identification of diverse RNA viruses in Obscuromonas flagellates (Euglenozoa: Trypanosomatidae: Blastocrithidiinae). Description: Grybchuk, Danyil, et al. Identification of diverse RNA viruses in Obscuromonas flagellates (Euglenozoa: Trypanosomatidae: Blastocrithidiinae). ''Virus Evol''. 2024; '''10''' (1):veae037
Impact of low-dose ozone nanobubble treatments on antimicrobial resistance genes in pond water. Description: Huang, Qianjun, et al. Impact of low-dose ozone nanobubble treatments on antimicrobial resistance genes in pond water. ''Front Microbiol''. 2024; '''15''': 1393266
Insight into endophytic microbial diversity in two halophytes and plant beneficial attributes of Bacillus swezeyi. Description: Gao, Lei, et al. Insight into endophytic microbial diversity in two halophytes and plant beneficial attributes of Bacillus swezeyi. ''Front Microbiol''. 2024; '''15''': 1447755
Insights into the molecular response of Dioithona rigida to selenium nanoparticles: de novo transcriptome assembly and differential gene expression analysis. Description: Meethalepurayil, Vineeth Kumar Chirayil, et al. Insights into the molecular response of Dioithona rigida to selenium nanoparticles: de novo transcriptome assembly and differential gene expression analysis. ''Sci Technol Adv Mater''. 2024; '''25''' (1):2379758
Integrated analysis of gut metabolome, microbiome, and brain function reveal the role of gut-brain axis in longevity. Description: Jiao, Bin, et al. Integrated analysis of gut metabolome, microbiome, and brain function reveal the role of gut-brain axis in longevity. ''Gut Microbes''. 2024 Jan-Dec; '''16''' (1):2331434
Integrated analysis of gut microbiome and its metabolites in ACE2-knockout and ACE2-overexpressed mice. Description: Song, Lini, et al. Integrated analysis of gut microbiome and its metabolites in ACE2-knockout and ACE2-overexpressed mice. ''Front Cell Infect Microbiol''. 2024; '''14''': 1404678
Integrated metagenomics and metabolomics analyses revealed biomarkers in beta-casein A2A2-type cows. Description: Zhao, Jinyan, et al. Integrated metagenomics and metabolomics analyses revealed biomarkers in beta-casein A2A2-type cows. ''Front Vet Sci''. 2024; '''11''': 1438717
Intramammary preparation of enrofloxacin hydrochloride-dihydrate for bovine mastitis (biofilm-forming Staphylococcus aureus). Description: Cordova-Gonzalez, Diana, et al. Intramammary preparation of enrofloxacin hydrochloride-dihydrate for bovine mastitis (biofilm-forming Staphylococcus aureus). ''J Vet Sci''. 2024 Jan; '''25''' (1):e6
Investigating the mechanism of rough phenotype in a naturally attenuated Brucella strain: insights from whole genome sequencing. Description: Han, Wendong, et al. Investigating the mechanism of rough phenotype in a naturally attenuated Brucella strain: insights from whole genome sequencing. ''Front Med (Lausanne)''. 2024; '''11''': 1363785
Isolation and characterization of a novel lytic Parabacteroides distasonis bacteriophage phiPDS1 from the human gut. Description: Cortes-Martin, Adrian, et al. Isolation and characterization of a novel lytic Parabacteroides distasonis bacteriophage phiPDS1 from the human gut. ''Gut Microbes''. 2024 Jan-Dec; '''16''' (1):2298254
Isolation, characterization, and genomic analysis of a lytic bacteriophage, PQ43W, with the potential of controlling bacterial wilt. Description: Huang, Binbin, et al. Isolation, characterization, and genomic analysis of a lytic bacteriophage, PQ43W, with the potential of controlling bacterial wilt. ''Front Microbiol''. 2024; '''15''': 1396213
Ji-Ni-De-Xie ameliorates type 2 diabetes mellitus by modulating the bile acids metabolism and FXR/FGF15 signaling pathway. Description: Tao, Yiwen, et al. Ji-Ni-De-Xie ameliorates type 2 diabetes mellitus by modulating the bile acids metabolism and FXR/FGF15 signaling pathway. ''Front Pharmacol''. 2024; '''15''': 1383896
LocoGSE, a sequence-based genome size estimator for plants. Description: Guenzi-Tiberi, Pierre, et al. LocoGSE, a sequence-based genome size estimator for plants. ''Front Plant Sci''. 2024; '''15''': 1328966
Magnesium oxide nanoparticles reduce clubroot by regulating plant defense response and rhizosphere microbial community of tumorous stem mustard (Brassica juncea var. tumida). Description: Liao, Jingjing, et al. Magnesium oxide nanoparticles reduce clubroot by regulating plant defense response and rhizosphere microbial community of tumorous stem mustard (Brassica juncea var. tumida). ''Front Microbiol''. 2024; '''15''': 1370427
Metagenomic analysis demonstrates distinct changes in the gut microbiome of Kawasaki diseases children. Description: Han, Linli, et al. Metagenomic analysis demonstrates distinct changes in the gut microbiome of Kawasaki diseases children. ''Front Immunol''. 2024; '''15''': 1416185
Metagenomic analysis of core differential microbes between traditional starter and Round-Koji-mechanical starter of Chi-flavor Baijiu. Description: Liang, Jinglong, et al. Metagenomic analysis of core differential microbes between traditional starter and Round-Koji-mechanical starter of Chi-flavor Baijiu. ''Front Microbiol''. 2024; '''15''': 1390899
Metagenomic and genomic analysis of heavy metal-tolerant and -resistant bacteria in resource islands in a semi-arid zone of the Colombian Caribbean. Description: Herrera-Calderon, Andrea Carolina, et al. Metagenomic and genomic analysis of heavy metal-tolerant and -resistant bacteria in resource islands in a semi-arid zone of the Colombian Caribbean. ''Environ Sci Pollut Res Int''. 2024 Jan; '''31''' (4):5596-5609
Metagenomic and -transcriptomic analyses of microbial nitrogen transformation potential, and gene expression in Swiss lake sediments. Description: Baumann, Kathrin B L, et al. Metagenomic and -transcriptomic analyses of microbial nitrogen transformation potential, and gene expression in Swiss lake sediments. ''ISME Commun''. 2024 Jan; '''4''' (1):ycae110
Metagenomic comparison of gut communities between wild and captive Himalayan griffons. Description: Wang, You, et al. Metagenomic comparison of gut communities between wild and captive Himalayan griffons. ''Front Vet Sci''. 2024; '''11''': 1403932
Metagenomic sequencing identified microbial species in the rumen and cecum microbiome responsible for niacin treatment and related to intramuscular fat content in finishing cattle. Description: Yang, Zhuqing, et al. Metagenomic sequencing identified microbial species in the rumen and cecum microbiome responsible for niacin treatment and related to intramuscular fat content in finishing cattle. ''Front Microbiol''. 2024; '''15''': 1334068
Metagenomics profiling of the microbial community and functional differences in solid-state fermentation vinegar starter (seed Pei) from different Chinese regions. Description: Han, Dong, et al. Metagenomics profiling of the microbial community and functional differences in solid-state fermentation vinegar starter (seed Pei) from different Chinese regions. ''Front Microbiol''. 2024; '''15''': 1389737
MetaQuad: shared informative variants discovery in metagenomic samples. Description: Xu, Sheng, et al. MetaQuad: shared informative variants discovery in metagenomic samples. ''Bioinform Adv''. 2024; '''4''' (1):vbae030
Microbial Diversity in Children with Gastroenteritis in the Amazon Region of Brazil: Development and Validation of a Molecular Method for Complete Sequencing of Viral Genomes. Description: Hernandez, Juliana Merces, et al. Microbial Diversity in Children with Gastroenteritis in the Amazon Region of Brazil: Development and Validation of a Molecular Method for Complete Sequencing of Viral Genomes. ''J Genomics''. 2024; '''12''': 47-54
Microbial signatures in human periodontal disease: a metatranscriptome meta-analysis. Description: Ovsepian, Armen, et al. Microbial signatures in human periodontal disease: a metatranscriptome meta-analysis. ''Front Microbiol''. 2024; '''15''': 1383404
Modulation of metabolic and immunoregulatory pathways in the gut transcriptome of Atlantic salmon (Salmo salar L.) after early nutritional programming during first feeding with plant-based diet. Description: Tawfik, Marwa Mamdouh, et al. Modulation of metabolic and immunoregulatory pathways in the gut transcriptome of Atlantic salmon (Salmo salar L.) after early nutritional programming during first feeding with plant-based diet. ''Front Immunol''. 2024; '''15''': 1412821
Multi-omics insights into the energy compensation of rumen microbiota of grazing yaks in cold season. Description: Bai, Jie, et al. Multi-omics insights into the energy compensation of rumen microbiota of grazing yaks in cold season. ''Front Microbiol''. 2024; '''15''': 1467841
New clades of viruses infecting the obligatory biotroph Bremia lactucae representing distinct evolutionary trajectory for viruses infecting oomycetes. Description: Forgia, Marco, et al. New clades of viruses infecting the obligatory biotroph Bremia lactucae representing distinct evolutionary trajectory for viruses infecting oomycetes. ''Virus Evol''. 2024; '''10''' (1):veae003
New mechanistic insights of anti-obesity by sleeve gastrectomy-altered gut microbiota and lipid metabolism. Description: Liu, Chuxuan, et al. New mechanistic insights of anti-obesity by sleeve gastrectomy-altered gut microbiota and lipid metabolism. ''Front Endocrinol (Lausanne)''. 2024; '''15''': 1338147
Paired metagenomic and chemical evaluation of aflatoxin-contaminated dog kibble. Description: Ottesen, Andrea, et al. Paired metagenomic and chemical evaluation of aflatoxin-contaminated dog kibble. ''Front Vet Sci''. 2024; '''11''': 1374839
Panax notoginseng stems and leaves affect microbial community and function in cecum of duzang pigs. Description: Yi, Lanlan, et al. Panax notoginseng stems and leaves affect microbial community and function in cecum of duzang pigs. ''Transl Anim Sci''. 2024; '''8''': txad142
Pathogen-specific alterations in intestinal microbiota precede urinary tract infections in preterm infants: a longitudinal case-control study. Description: Hong, Luyang, et al. Pathogen-specific alterations in intestinal microbiota precede urinary tract infections in preterm infants: a longitudinal case-control study. ''Gut Microbes''. 2024 Jan-Dec; '''16''' (1):2333413
pH selects for distinct N(2)O-reducing microbiomes in tropical soil microcosms. Description: Sun, Yanchen, et al. pH selects for distinct N(2)O-reducing microbiomes in tropical soil microcosms. ''ISME Commun''. 2024 Jan; '''4''' (1):ycae070
Phylogenetic and phenotypic characterization of Burkholderia pseudomallei isolates from Ghana reveals a novel sequence type and common phenotypes. Description: Schully, Kevin L, et al. Phylogenetic and phenotypic characterization of Burkholderia pseudomallei isolates from Ghana reveals a novel sequence type and common phenotypes. ''Front Microbiol''. 2024; '''15''': 1401259
Plant growth-promoting rhizobacteria enhance active ingredient accumulation in medicinal plants at elevated CO(2) and are associated with indigenous microbiome. Description: Ng, Charles Wang Wai, et al. Plant growth-promoting rhizobacteria enhance active ingredient accumulation in medicinal plants at elevated CO(2) and are associated with indigenous microbiome. ''Front Microbiol''. 2024; '''15''': 1426893
Proteomics analysis reveals differential acclimation of coastal and oceanic Synechococcus to climate warming and iron limitation. Description: Schiksnis, Cara, et al. Proteomics analysis reveals differential acclimation of coastal and oceanic Synechococcus to climate warming and iron limitation. ''Front Microbiol''. 2024; '''15''': 1323499
Proton pump inhibitors increase the risk of carbapenem-resistant Enterobacteriaceae colonization by facilitating the transfer of antibiotic resistance genes among bacteria in the gut microbiome. Description: Lee, Imchang, et al. Proton pump inhibitors increase the risk of carbapenem-resistant Enterobacteriaceae colonization by facilitating the transfer of antibiotic resistance genes among bacteria in the gut microbiome. ''Gut Microbes''. 2024 Jan-Dec; '''16''' (1):2341635
Regulatory microRNAs and phasiRNAs of paclitaxel biosynthesis in Taxus chinensis. Description: Sun, Ming-Sheng, et al. Regulatory microRNAs and phasiRNAs of paclitaxel biosynthesis in Taxus chinensis. ''Front Plant Sci''. 2024; '''15''': 1403060
Response analysis of Pinus sibirica to pine wood nematode infection through transcriptomics and metabolomics study. Description: Zhang, Jiawei, et al. Response analysis of Pinus sibirica to pine wood nematode infection through transcriptomics and metabolomics study. ''Front Plant Sci''. 2024; '''15''': 1383018
Seq2Phase: language model-based accurate prediction of client proteins in liquid-liquid phase separation. Description: Miyata, Kazuki, et al. Seq2Phase: language model-based accurate prediction of client proteins in liquid-liquid phase separation. ''Bioinform Adv''. 2024; '''4''' (1):vbad189
Short-chain fatty acids in breast milk and their relationship with the infant gut microbiota. Description: Xi, Menglu, et al. Short-chain fatty acids in breast milk and their relationship with the infant gut microbiota. ''Front Microbiol''. 2024; '''15''': 1356462
Single amino acid change in tomato brown rugose fruit virus breaks virus-specific resistance in new resistant tomato cultivar. Description: Zisi, Zafeiro, et al. Single amino acid change in tomato brown rugose fruit virus breaks virus-specific resistance in new resistant tomato cultivar. ''Front Plant Sci''. 2024; '''15''': 1382862
Somatic genome architecture and molecular evolution are decoupled in "young" linage-specific gene families in ciliates. Description: Maurer-Alcala, Xyrus X, et al. Somatic genome architecture and molecular evolution are decoupled in "young" linage-specific gene families in ciliates. ''PLoS One''. 2024; '''19''' (1):e0291688
Species- and subspecies-level characterization of health-associated bacterial consortia that colonize the human gut during infancy. Description: Minot, Samuel S, et al. Species- and subspecies-level characterization of health-associated bacterial consortia that colonize the human gut during infancy. ''Gut Microbes''. 2024 Jan-Dec; '''16''' (1):2414975
Synbiotic regulates gut microbiota in patients with lupus nephritis: an analysis using metagenomic and metabolome sequencing. Description: Zhu, Qiuyu, et al. Synbiotic regulates gut microbiota in patients with lupus nephritis: an analysis using metagenomic and metabolome sequencing. ''Front Microbiol''. 2024; '''15''': 1295378
Taking advantage of reference-guided assembly in a slowly-evolving lineage: Application to Testudo graeca. Description: Mira-Jover, Andrea, et al. Taking advantage of reference-guided assembly in a slowly-evolving lineage: Application to Testudo graeca. ''PLoS One''. 2024; '''19''' (8):e0303408
Taxonomic and functional shifts of gut microbiome in immunoglobulin A vasculitis children and their mothers. Description: Liang, Yijia, et al. Taxonomic and functional shifts of gut microbiome in immunoglobulin A vasculitis children and their mothers. ''Front Pediatr''. 2024; '''12''': 1356529
Taxonomic and genomic attributes of oligotrophic soil bacteria. Description: Dragone, Nicholas B, et al. Taxonomic and genomic attributes of oligotrophic soil bacteria. ''ISME Commun''. 2024 Jan; '''4''' (1):ycae081
The diverse liver viromes of Australian geckos and skinks are dominated by hepaciviruses and picornaviruses and reflect host taxonomy and habitat. Description: Mahar, Jackie E, et al. The diverse liver viromes of Australian geckos and skinks are dominated by hepaciviruses and picornaviruses and reflect host taxonomy and habitat. ''Virus Evol''. 2024; '''10''' (1):veae044
The genome sequence of a braconid wasp, Aleiodes leptofemur van Achterberg & Shaw, 2016. Description: Broad, Gavin R. The genome sequence of a braconid wasp, Aleiodes leptofemur van Achterberg & Shaw, 2016. ''Wellcome Open Res''. 2024; '''9''': 460
The genome sequence of a braconid wasp, Aleiodes testaceus (Telenga, 1941). Description: Broad, Gavin R, et al. The genome sequence of a braconid wasp, Aleiodes testaceus (Telenga, 1941). ''Wellcome Open Res''. 2024; '''9''': 408
The genome sequence of a braconid wasp, Dinocampus coccinellae (Schrank, 1802). Description: Barclay, Maxwell V L, et al. The genome sequence of a braconid wasp, Dinocampus coccinellae (Schrank, 1802). ''Wellcome Open Res''. 2024; '''9''': 461
The genome sequence of a cased caddisfly, Mystacides longicornis (Linnaeus, 1758). Description: Coleman, Derek. The genome sequence of a cased caddisfly, Mystacides longicornis (Linnaeus, 1758). ''Wellcome Open Res''. 2024; '''9''': 310
The genome sequence of a cuckoo wasp, Hedychridium roseum (Rossi, 1790). Description: Boyes, Clare. The genome sequence of a cuckoo wasp, Hedychridium roseum (Rossi, 1790). ''Wellcome Open Res''. 2024; '''9''': 484
The genome sequence of a drosophilid fruit fly, Drosophila limbata von Roser 1840. Description: Obbard, Darren J. The genome sequence of a drosophilid fruit fly, Drosophila limbata von Roser 1840. ''Wellcome Open Res''. 2024; '''9''': 365
The genome sequence of a ground beetle, Clivina fossor (Linnaeus, 1758). Description: Crowley, Liam M, et al. The genome sequence of a ground beetle, Clivina fossor (Linnaeus, 1758). ''Wellcome Open Res''. 2024; '''9''': 438
The genome sequence of a hydroid, Candelabrum cocksii (Cocks, 1854). Description: Adkins, Patrick, et al. The genome sequence of a hydroid, Candelabrum cocksii (Cocks, 1854). ''Wellcome Open Res''. 2024; '''9''': 393
The genome sequence of a jewel beetle, Agrilus biguttatus (Fabricius, 1776). Description: Garland, Steve. The genome sequence of a jewel beetle, Agrilus biguttatus (Fabricius, 1776). ''Wellcome Open Res''. 2024; '''9''': 413
The genome sequence of a lichen-forming fungus, Platismatia glauca Linnaeus, 1753. Description: Yahr, Rebecca. The genome sequence of a lichen-forming fungus, Platismatia glauca Linnaeus, 1753. ''Wellcome Open Res''. 2024; '''9''': 457
The genome sequence of an Entiminae weevil, Polydrusus pterygomalis Boheman, 1840. Description: Telfer, Mark G, et al. The genome sequence of an Entiminae weevil, Polydrusus pterygomalis Boheman, 1840. ''Wellcome Open Res''. 2024; '''9''': 528
The genome sequence of an ichneumonid wasp, Hyposoter dolosus (Gravenhorst, 1829). Description: Broad, Gavin R. The genome sequence of an ichneumonid wasp, Hyposoter dolosus (Gravenhorst, 1829). ''Wellcome Open Res''. 2024; '''9''': 499
The genome sequence of an ichneumonid wasp, Rhimphoctona ( Xylophylax) megacephalus (Gravenhorst, 1829). Description: Boparai, Jaswinder, et al. The genome sequence of an ichneumonid wasp, Rhimphoctona ( Xylophylax) megacephalus (Gravenhorst, 1829). ''Wellcome Open Res''. 2024; '''9''': 472
The genome sequence of a sawfly Macrophya annulata (Geoffroy, 1785). Description: Crowley, Liam M, et al. The genome sequence of a sawfly Macrophya annulata (Geoffroy, 1785). ''Wellcome Open Res''. 2024; '''9''': 388
The genome sequence of Reeves' muntjac, Muntiacus reevesi (Ogilby, 1839). Description: Ewart, Nick, et al. The genome sequence of Reeves' muntjac, Muntiacus reevesi (Ogilby, 1839). ''Wellcome Open Res''. 2024; '''9''': 368
The genome sequence of the cephid sawfly, Cephus spinipes (Panzer, 1800). Description: Broad, Gavin R, et al. The genome sequence of the cephid sawfly, Cephus spinipes (Panzer, 1800). ''Wellcome Open Res''. 2024; '''9''': 557
The genome sequence of the Coccidian parasite, Eimeria praecox (Apicomplexa: Eucoccidiorida). Description: Blake, Damer P. The genome sequence of the Coccidian parasite, Eimeria praecox (Apicomplexa: Eucoccidiorida). ''Wellcome Open Res''. 2024; '''9''': 331
The genome sequence of the Common Flat-body moth, Agonopterix heracliana Linnaeus, 1758. Description: Boyes, Douglas, et al. The genome sequence of the Common Flat-body moth, Agonopterix heracliana Linnaeus, 1758. ''Wellcome Open Res''. 2024; '''9''': 329
The genome sequence of the Cotton Bollworm moth, Helicoverpa armigera (Hubner, 1808). Description: Holland, Peter W H. The genome sequence of the Cotton Bollworm moth, Helicoverpa armigera (Hubner, 1808). ''Wellcome Open Res''. 2024; '''9''': 428
The genome sequence of the cut surfclam, Spisula subtruncata (da Costa, 1778). Description: Adkins, Patrick, et al. The genome sequence of the cut surfclam, Spisula subtruncata (da Costa, 1778). ''Wellcome Open Res''. 2024; '''9''': 286
The genome sequence of the Dark Crimson Underwing moth, Catocala sponsa Linnaeus, 1767. Description: Broad, Gavin R. The genome sequence of the Dark Crimson Underwing moth, Catocala sponsa Linnaeus, 1767. ''Wellcome Open Res''. 2024; '''9''': 412
The genome sequence of the Essex Skipper butterfly, Thymelicus lineola (Ochsenheimer, 1808). Description: Lohse, Konrad, et al. The genome sequence of the Essex Skipper butterfly, Thymelicus lineola (Ochsenheimer, 1808). ''Wellcome Open Res''. 2024; '''9''': 452
The genome sequence of the European conger eel, Conger conger (Linnaeus, 1758). Description: Adkins, Patrick, et al. The genome sequence of the European conger eel, Conger conger (Linnaeus, 1758). ''Wellcome Open Res''. 2024; '''9''': 532
The genome sequence of the European harvest mouse, Micromys minutus (Pallas, 1771). Description: O'Brien, Michelle F, et al. The genome sequence of the European harvest mouse, Micromys minutus (Pallas, 1771). ''Wellcome Open Res''. 2024; '''9''': 394
The genome sequence of the German scorpionfly, Panorpa germanica Linnaeus, 1758. Description: Sivell, Duncan, et al. The genome sequence of the German scorpionfly, Panorpa germanica Linnaeus, 1758. ''Wellcome Open Res''. 2024; '''9''': 285
The genome sequence of the grey gurnard, Eutrigla gurnardus (Linnaeus, 1758). Description: Brittain, Rachel, et al. The genome sequence of the grey gurnard, Eutrigla gurnardus (Linnaeus, 1758). ''Wellcome Open Res''. 2024; '''9''': 307
The genome sequence of the Mauritius parakeet, Alexandrinus eques (formerly Psittacula eques) (A.Newton & E. Newton, 1876). Description: Morales, Hernan E, et al. The genome sequence of the Mauritius parakeet, Alexandrinus eques (formerly Psittacula eques) (A.Newton & E. Newton, 1876). ''Wellcome Open Res''. 2024; '''9''': 378
The genome sequence of the moss carder bee, Bombus muscorum (Linnaeus, 1758). Description: Broad, Gavin R, et al. The genome sequence of the moss carder bee, Bombus muscorum (Linnaeus, 1758). ''Wellcome Open Res''. 2024; '''9''': 397
The genome sequence of the Muslin Footman moth, Nudaria mundana (Linnaeus, 1761). Description: Crowley, Liam M, et al. The genome sequence of the Muslin Footman moth, Nudaria mundana (Linnaeus, 1761). ''Wellcome Open Res''. 2024; '''9''': 283
The genome sequence of the nematode Caenorhabditis drosophilae (Rhabditida, Rhabditidae) (Kiontke, 1997). Description: Kieninger, Manuela, et al. The genome sequence of the nematode Caenorhabditis drosophilae (Rhabditida, Rhabditidae) (Kiontke, 1997). ''Wellcome Open Res''. 2024; '''9''': 292
The genome sequence of the Oak Nycteoline moth, Nycteola revayana (Scopoli, 1772). Description: Boyes, Douglas, et al. The genome sequence of the Oak Nycteoline moth, Nycteola revayana (Scopoli, 1772). ''Wellcome Open Res''. 2024; '''9''': 258
The genome sequence of the Pacific oyster, Magallana gigas (Thunberg, 1793). Description: Mrowicki, Rob, et al. The genome sequence of the Pacific oyster, Magallana gigas (Thunberg, 1793). ''Wellcome Open Res''. 2024; '''9''': 284
The genome sequence of the particolored bat, Vespertilio murinus Linnaeus, 1758. Description: Vandendriessche, Bob, et al. The genome sequence of the particolored bat, Vespertilio murinus Linnaeus, 1758. ''Wellcome Open Res''. 2024; '''9''': 403
The genome sequence of the ruby bryozoan, Bugula neritina (Linnaeus, 1758). Description: Uhl, Rebekka, et al. The genome sequence of the ruby bryozoan, Bugula neritina (Linnaeus, 1758). ''Wellcome Open Res''. 2024; '''9''': 533
The genome sequence of the Sandhill Rustic moth Luperina nickerlii (Freyer, 1845) subspecies leechi Goater, 1976. Description: Spalding, Adrian, et al. The genome sequence of the Sandhill Rustic moth Luperina nickerlii (Freyer, 1845) subspecies leechi Goater, 1976. ''Wellcome Open Res''. 2024; '''9''': 382
The genome sequence of the sand star, Astropecten irregularis (Pennant, 1777). Description: Adkins, Patrick, et al. The genome sequence of the sand star, Astropecten irregularis (Pennant, 1777). ''Wellcome Open Res''. 2024; '''9''': 431
The genome sequence of the Small Scabious Mining Bee, Andrena marginata Fabricius, 1776. Description: Mitchell, Ryan, et al. The genome sequence of the Small Scabious Mining Bee, Andrena marginata Fabricius, 1776. ''Wellcome Open Res''. 2024; '''9''': 447
The genome sequence of the yellow-girdled Dasysyrphus, Dasysyrphus tricinctus (Fallen, 1817). Description: Crowley, Liam M, et al. The genome sequence of the yellow-girdled Dasysyrphus, Dasysyrphus tricinctus (Fallen, 1817). ''Wellcome Open Res''. 2024; '''9''': 561
The investigation of the role of oral-originated Prevotella-induced inflammation in childhood asthma. Description: Yan, Tongtong, et al. The investigation of the role of oral-originated Prevotella-induced inflammation in childhood asthma. ''Front Microbiol''. 2024; '''15''': 1400079
The leaf idioblastome of the medicinal plant Catharanthus roseus is associated with stress resistance and alkaloid metabolism. Description: Guedes, Joana G, et al. The leaf idioblastome of the medicinal plant Catharanthus roseus is associated with stress resistance and alkaloid metabolism. ''J Exp Bot''. 2024 Jan 1; '''75''' (1):274-299
The protective role of commensal gut microbes and their metabolites against bacterial pathogens. Description: Cheng, Liqin, et al. The protective role of commensal gut microbes and their metabolites against bacterial pathogens. ''Gut Microbes''. 2024 Jan-Dec; '''16''' (1):2356275
The tissue virome of black-spotted frogs reveals a diversity of uncharacterized viruses. Description: Li, Chenxi, et al. The tissue virome of black-spotted frogs reveals a diversity of uncharacterized viruses. ''Virus Evol''. 2024; '''10''' (1):veae062
Time-restricted feeding ameliorates non-alcoholic fatty liver disease through modulating hepatic nicotinamide metabolism via gut microbiota remodeling. Description: Feng, Ruijia, et al. Time-restricted feeding ameliorates non-alcoholic fatty liver disease through modulating hepatic nicotinamide metabolism via gut microbiota remodeling. ''Gut Microbes''. 2024 Jan-Dec; '''16''' (1):2390164
Transcriptional landscape of the pMP7017 megaplasmid and its impact on the Bifidobacterium breve UCC2003 transcriptome. Description: Dineen, Rebecca L, et al. Transcriptional landscape of the pMP7017 megaplasmid and its impact on the Bifidobacterium breve UCC2003 transcriptome. ''Microb Biotechnol''. 2024 Jan; '''17''' (1):e14405
Transcriptome analysis of genes involved in the pathogenesis mechanism of potato virus Y in potato cultivar YouJin. Description: Yang, Tianqi, et al. Transcriptome analysis of genes involved in the pathogenesis mechanism of potato virus Y in potato cultivar YouJin. ''Front Microbiol''. 2024; '''15''': 1353814
Transcriptome analysis revealed potential mechanisms of channel catfish growth advantage over blue catfish in a tank culture environment. Description: Wang, Haolong, et al. Transcriptome analysis revealed potential mechanisms of channel catfish growth advantage over blue catfish in a tank culture environment. ''Front Genet''. 2024; '''15''': 1341555
Transcriptomic insights into the shift of trophic strategies in mixotrophic dinoflagellate Lepidodinium in the warming ocean. Description: Chen, Jiawei, et al. Transcriptomic insights into the shift of trophic strategies in mixotrophic dinoflagellate Lepidodinium in the warming ocean. ''ISME Commun''. 2024 Jan; '''4''' (1):ycae087
Uncovering novel bacterial and archaeal diversity: genomic insights from metagenome-assembled genomes in Cuatro Cienegas, Coahuila. Description: Rodriguez-Cruz, Ulises E, et al. Uncovering novel bacterial and archaeal diversity: genomic insights from metagenome-assembled genomes in Cuatro Cienegas, Coahuila. ''Front Microbiol''. 2024; '''15''': 1369263
Unveiling Prasinovirus diversity and host specificity through targeted enrichment in the South China Sea. Description: Thomy, Julie, et al. Unveiling Prasinovirus diversity and host specificity through targeted enrichment in the South China Sea. ''ISME Commun''. 2024 Jan; '''4''' (1):ycae109
Unveiling the regulatory mechanism of poly-gamma-glutamic acid on soil characteristics under drought stress through integrated metagenomics and metabolomics analysis. Description: Hong, Li, et al. Unveiling the regulatory mechanism of poly-gamma-glutamic acid on soil characteristics under drought stress through integrated metagenomics and metabolomics analysis. ''Front Microbiol''. 2024; '''15''': 1387223
Valine induces inflammation and enhanced adipogenesis in lean mice by multi-omics analysis. Description: Zheng, Hui-Yi, et al. Valine induces inflammation and enhanced adipogenesis in lean mice by multi-omics analysis. ''Front Nutr''. 2024; '''11''': 1379390
Vancomycin relieves tacrolimus-induced hyperglycemia by eliminating gut bacterial beta-glucuronidase enzyme activity. Description: Li, Peixia, et al. Vancomycin relieves tacrolimus-induced hyperglycemia by eliminating gut bacterial beta-glucuronidase enzyme activity. ''Gut Microbes''. 2024 Jan-Dec; '''16''' (1):2310277
Virome analysis of New Zealand's bats reveals cross-species viral transmission among the Coronaviridae. Description: Waller, Stephanie J, et al. Virome analysis of New Zealand's bats reveals cross-species viral transmission among the Coronaviridae. ''Virus Evol''. 2024; '''10''' (1):veae008
Virome release of an invasive exotic plant species in southern France. Description: Moubset, Oumaima, et al. Virome release of an invasive exotic plant species in southern France. ''Virus Evol''. 2024; '''10''' (1):veae025
Whole-genome sequencing of marine water-derived Curvularia verruculosa KHW-7: a pioneering study. Description: Baranda, Payal, et al. Whole-genome sequencing of marine water-derived Curvularia verruculosa KHW-7: a pioneering study. ''Front Microbiol''. 2024; '''15''': 1363879
Chromosome-level genome assemblies of two littorinid marine snails indicate genetic basis of intertidal adaptation and ancient karyotype evolved from bilaterian ancestors. Description: Wang, Yan-Shu, et al. Chromosome-level genome assemblies of two littorinid marine snails indicate genetic basis of intertidal adaptation and ancient karyotype evolved from bilaterian ancestors. ''Gigascience''. 2024 Jan 2; '''13''':
Evolutionary genomics of three agricultural pest moths reveals rapid evolution of host adaptation and immune-related genes. Description: Weng, Yi-Ming, et al. Evolutionary genomics of three agricultural pest moths reveals rapid evolution of host adaptation and immune-related genes. ''Gigascience''. 2024 Jan 2; '''13''':
Gapless genome assembly and epigenetic profiles reveal gene regulation of whole-genome triplication in lettuce. Description: Cao, Shuai, et al. Gapless genome assembly and epigenetic profiles reveal gene regulation of whole-genome triplication in lettuce. ''Gigascience''. 2024 Jan 2; '''13''':
Pervasive associations between dark septate endophytic fungi with tree root and soil microbiomes across Europe. Description: Netherway, Tarquin, et al. Pervasive associations between dark septate endophytic fungi with tree root and soil microbiomes across Europe. ''Nat Commun''. 2024 Jan 2; '''15''' (1):159
The genomes of 5 underutilized Papilionoideae crops provide insights into root nodulation and disease resistance. Description: Yuan, Lihua, et al. The genomes of 5 underutilized Papilionoideae crops provide insights into root nodulation and disease resistance. ''Gigascience''. 2024 Jan 2; '''13''':
The genomes of Dahlia pinnata, Cosmos bipinnatus, and Bidens alba in tribe Coreopsideae provide insights into polyploid evolution and inulin biosynthesis. Description: Wang, Hengchao, et al. The genomes of Dahlia pinnata, Cosmos bipinnatus, and Bidens alba in tribe Coreopsideae provide insights into polyploid evolution and inulin biosynthesis. ''Gigascience''. 2024 Jan 2; '''13''':
New dienelactone hydrolase from microalgae bacterial community-Antibiofilm activity against fish pathogens and potential applications for aquaculture. Description: Bergmann, Lutgardis, et al. New dienelactone hydrolase from microalgae bacterial community-Antibiofilm activity against fish pathogens and potential applications for aquaculture. ''Sci Rep''. 2024 Jan 3; '''14''' (1):377
First Genome Sequence of the Microcolonial Black Fungus Saxispiralis lemnorum MUM 23.14: Insights into the Unique Genomic Traits of the Aeminiaceae Family. Description: Paiva, Diana S, et al. First Genome Sequence of the Microcolonial Black Fungus Saxispiralis lemnorum MUM 23.14: Insights into the Unique Genomic Traits of the Aeminiaceae Family. ''Microorganisms''. 2024 Jan 4; '''12''' (1):
Virome analysis of Desmodus rotundus tissue samples from the Amazon region. Description: Albuquerque, Nadia K, et al. Virome analysis of Desmodus rotundus tissue samples from the Amazon region. ''BMC Genomics''. 2024 Jan 4; '''25''' (1):34
A chromosome-level genome assembly for Onobrychis viciifolia reveals gene copy number gain underlying enhanced proanthocyanidin biosynthesis. Description: He, Junyi, et al. A chromosome-level genome assembly for Onobrychis viciifolia reveals gene copy number gain underlying enhanced proanthocyanidin biosynthesis. ''Commun Biol''. 2024 Jan 5; '''7''' (1):19
AnimalMetaOmics: a multi-omics data resources for exploring animal microbial genomes and microbiomes. Description: Hu, Ruirui, et al. AnimalMetaOmics: a multi-omics data resources for exploring animal microbial genomes and microbiomes. ''Nucleic Acids Res''. 2024 Jan 5; '''52''' (D1):D690-D700
Changes in Microbiota Composition during the Anaerobic Digestion of Macroalgae in a Three-Stage Bioreactor. Description: Vasiliauskiene, Dovile, et al. Changes in Microbiota Composition during the Anaerobic Digestion of Macroalgae in a Three-Stage Bioreactor. ''Microorganisms''. 2024 Jan 5; '''12''' (1):
Dapagliflozin ameliorates diabetes-induced spermatogenic dysfunction by modulating the adenosine metabolism along the gut microbiota-testis axis. Description: Jin, Zirun, et al. Dapagliflozin ameliorates diabetes-induced spermatogenic dysfunction by modulating the adenosine metabolism along the gut microbiota-testis axis. ''Sci Rep''. 2024 Jan 5; '''14''' (1):641
gcPathogen: a comprehensive genomic resource of human pathogens for public health. Description: Guo, Chongye, et al. gcPathogen: a comprehensive genomic resource of human pathogens for public health. ''Nucleic Acids Res''. 2024 Jan 5; '''52''' (D1):D714-D723
SCAN: Spatiotemporal Cloud Atlas for Neural cells. Description: Deng, Yushan, et al. SCAN: Spatiotemporal Cloud Atlas for Neural cells. ''Nucleic Acids Res''. 2024 Jan 5; '''52''' (D1):D998-D1009
SoyMD: a platform combining multi-omics data with various tools for soybean research and breeding. Description: Yang, Zhiquan, et al. SoyMD: a platform combining multi-omics data with various tools for soybean research and breeding. ''Nucleic Acids Res''. 2024 Jan 5; '''52''' (D1):D1639-D1650
Effects of Different Heat Treatments on Yak Milk Proteins on Intestinal Microbiota and Metabolism. Description: Shu, Senbiao, et al. Effects of Different Heat Treatments on Yak Milk Proteins on Intestinal Microbiota and Metabolism. ''Foods''. 2024 Jan 6; '''13''' (2):
Aerobic denitrification as an N2O source from microbial communities. Description: Roothans, Nina, et al. Aerobic denitrification as an N2O source from microbial communities. ''ISME J''. 2024 Jan 8; '''18''' (1):
Anaerobic ammonium oxidation coupled to iron(III) reduction catalyzed by a lithoautotrophic nitrate-reducing iron(II) oxidizing enrichment culture. Description: Zhang, Hong-Bin, et al. Anaerobic ammonium oxidation coupled to iron(III) reduction catalyzed by a lithoautotrophic nitrate-reducing iron(II) oxidizing enrichment culture. ''ISME J''. 2024 Jan 8; '''18''' (1):
Bacterial growth and environmental adaptation via thiamine biosynthesis and thiamine-mediated metabolic interactions. Description: Xu, Xihui, et al. Bacterial growth and environmental adaptation via thiamine biosynthesis and thiamine-mediated metabolic interactions. ''ISME J''. 2024 Jan 8; '''18''' (1):
Biotic interactions between benthic infauna and aerobic methanotrophs mediate methane fluxes from coastal sediments. Description: Broman, Elias, et al. Biotic interactions between benthic infauna and aerobic methanotrophs mediate methane fluxes from coastal sediments. ''ISME J''. 2024 Jan 8; '''18''' (1):
Characterizing core microbiota and regulatory functions of the pig gut microbiome. Description: Hu, Jun, et al. Characterizing core microbiota and regulatory functions of the pig gut microbiome. ''ISME J''. 2024 Jan 8; '''18''' (1):
Chemolithoautotrophic diazotrophs dominate dark nitrogen fixation in mangrove sediments. Description: Wang, Shasha, et al. Chemolithoautotrophic diazotrophs dominate dark nitrogen fixation in mangrove sediments. ''ISME J''. 2024 Jan 8; '''18''' (1):
Commensal protist Tritrichomonas musculus exhibits a dynamic life cycle that induces extensive remodeling of the gut microbiota. Description: Popovic, Ana, et al. Commensal protist Tritrichomonas musculus exhibits a dynamic life cycle that induces extensive remodeling of the gut microbiota. ''ISME J''. 2024 Jan 8; '''18''' (1):
Convergence of gut phage communities but not bacterial communities following wild mouse bacteriophage transplantation into captive house mice. Description: Cizkova, Dagmar, et al. Convergence of gut phage communities but not bacterial communities following wild mouse bacteriophage transplantation into captive house mice. ''ISME J''. 2024 Jan 8; '''18''' (1):
Declines in ice cover are accompanied by light limitation responses and community change in freshwater diatoms. Description: Zepernick, Brittany N, et al. Declines in ice cover are accompanied by light limitation responses and community change in freshwater diatoms. ''ISME J''. 2024 Jan 8; '''18''' (1):
Ecological relevance of flagellar motility in soil bacterial communities. Description: Ramoneda, Josep, et al. Ecological relevance of flagellar motility in soil bacterial communities. ''ISME J''. 2024 Jan 8; '''18''' (1):
Four years of climate warming reduced dark carbon fixation in coastal wetlands. Description: Liu, Bolin, et al. Four years of climate warming reduced dark carbon fixation in coastal wetlands. ''ISME J''. 2024 Jan 8; '''18''' (1):
Global biogeography and ecological implications of cobamide-producing prokaryotes. Description: Wang, Jichen, et al. Global biogeography and ecological implications of cobamide-producing prokaryotes. ''ISME J''. 2024 Jan 8; '''18''' (1):
High niche specificity and host genetic diversity of groundwater viruses. Description: Gios, Emilie, et al. High niche specificity and host genetic diversity of groundwater viruses. ''ISME J''. 2024 Jan 8; '''18''' (1):
Host genetic variation and specialized metabolites from wheat leaves enriches for phyllosphere Pseudomonas spp. with enriched antibiotic resistomes. Description: Xiang, Qian, et al. Host genetic variation and specialized metabolites from wheat leaves enriches for phyllosphere Pseudomonas spp. with enriched antibiotic resistomes. ''ISME J''. 2024 Jan 8; '''18''' (1):
Large-scale single-virus genomics uncovers hidden diversity of river water viruses and diversified gene profiles. Description: Nishikawa, Yohei, et al. Large-scale single-virus genomics uncovers hidden diversity of river water viruses and diversified gene profiles. ''ISME J''. 2024 Jan 8; '''18''' (1):
Microorganisms oxidize glucose through distinct pathways in permeable and cohesive sediments. Description: Hutchinson, Tess F, et al. Microorganisms oxidize glucose through distinct pathways in permeable and cohesive sediments. ''ISME J''. 2024 Jan 8; '''18''' (1):
Niche differentiation within bacterial key-taxa in stratified surface waters of the Southern Pacific Gyre. Description: Oggerin, Monike, et al. Niche differentiation within bacterial key-taxa in stratified surface waters of the Southern Pacific Gyre. ''ISME J''. 2024 Jan 8; '''18''' (1):
Nitrite-oxidizing bacteria adapted to low-oxygen conditions dominate nitrite oxidation in marine oxygen minimum zones. Description: Fortin, Samantha G, et al. Nitrite-oxidizing bacteria adapted to low-oxygen conditions dominate nitrite oxidation in marine oxygen minimum zones. ''ISME J''. 2024 Jan 8; '''18''' (1):
Pectin supplementation accelerates post-antibiotic gut microbiome reconstitution orchestrated with reduced gut redox potential. Description: Xu, Rongying, et al. Pectin supplementation accelerates post-antibiotic gut microbiome reconstitution orchestrated with reduced gut redox potential. ''ISME J''. 2024 Jan 8; '''18''' (1):
Production of structurally diverse sphingolipids by anaerobic marine bacteria in the euxinic Black Sea water column. Description: Ding, Su, et al. Production of structurally diverse sphingolipids by anaerobic marine bacteria in the euxinic Black Sea water column. ''ISME J''. 2024 Jan 8; '''18''' (1):
Proteomes of native and non-native symbionts reveal responses underpinning host-symbiont specificity in the cnidarian-dinoflagellate symbiosis. Description: Mashini, Amir, et al. Proteomes of native and non-native symbionts reveal responses underpinning host-symbiont specificity in the cnidarian-dinoflagellate symbiosis. ''ISME J''. 2024 Jan 8; '''18''' (1):
Protist predation promotes antimicrobial resistance spread through antagonistic microbiome interactions. Description: Liu, Chen, et al. Protist predation promotes antimicrobial resistance spread through antagonistic microbiome interactions. ''ISME J''. 2024 Jan 8; '''18''' (1):
Rumen microbiome-driven insight into bile acid metabolism and host metabolic regulation. Description: Zhang, Boyan, et al. Rumen microbiome-driven insight into bile acid metabolism and host metabolic regulation. ''ISME J''. 2024 Jan 8; '''18''' (1):
Scallop-bacteria symbiosis from the deep sea reveals strong genomic coupling in the absence of cellular integration. Description: Lin, Yi-Tao, et al. Scallop-bacteria symbiosis from the deep sea reveals strong genomic coupling in the absence of cellular integration. ''ISME J''. 2024 Jan 8; '''18''' (1):
Simple Porifera holobiont reveals complex interactions between the host, an archaeon, a bacterium, and a phage. Description: Garritano, Alessandro N, et al. Simple Porifera holobiont reveals complex interactions between the host, an archaeon, a bacterium, and a phage. ''ISME J''. 2024 Jan 8; '''18''' (1):
Strain-level diversity in sulfonamide biodegradation: adaptation of Paenarthrobacter to sulfonamides. Description: Huang, Yue, et al. Strain-level diversity in sulfonamide biodegradation: adaptation of Paenarthrobacter to sulfonamides. ''ISME J''. 2024 Jan 8; '''18''' (1):
Temperature modulates dominance of a superinfecting Arctic virus in its unicellular algal host. Description: Meyer, Claudia, et al. Temperature modulates dominance of a superinfecting Arctic virus in its unicellular algal host. ''ISME J''. 2024 Jan 8; '''18''' (1):
Genome-wide patterns of non-coding sequence variation in the major fungal pathogen Aspergillus fumigatus. Description: Brown, Alec, et al. Genome-wide patterns of non-coding sequence variation in the major fungal pathogen Aspergillus fumigatus. ''bioRxiv''. 2024 Jan 9;
Functionally coherent transcriptional responses of Jatropha curcas and Pseudomonas fragi for rhizosphere mediated degradation of pyrene. Description: Singha, L Paikhomba, et al. Functionally coherent transcriptional responses of Jatropha curcas and Pseudomonas fragi for rhizosphere mediated degradation of pyrene. ''Sci Rep''. 2024 Jan 10; '''14''' (1):1014
Targeted Metagenomic Databases Provide Improved Analysis of Microbiota Samples. Description: Baud, Agnes, et al. Targeted Metagenomic Databases Provide Improved Analysis of Microbiota Samples. ''Microorganisms''. 2024 Jan 10; '''12''' (1):
Altered microbiota, antimicrobial resistance genes, and functional enzyme profiles in the rumen of yak calves fed with milk replacer. Description: Zhuang, Yimin, et al. Altered microbiota, antimicrobial resistance genes, and functional enzyme profiles in the rumen of yak calves fed with milk replacer. ''Microbiol Spectr''. 2024 Jan 11; '''12''' (1):e0131423
Effects of supplemental vitamin A on reproduction and antioxidative status of aged laying hens, and growth, blood indices and immunity of their offspring. Description: El-Ratel, Ibrahim T, et al. Effects of supplemental vitamin A on reproduction and antioxidative status of aged laying hens, and growth, blood indices and immunity of their offspring. ''Poult Sci''. 2024 Jan 11; '''103''' (3):103453
Structural changes in the gut virome of patients with atherosclerotic cardiovascular disease. Description: Li, Youshan, et al. Structural changes in the gut virome of patients with atherosclerotic cardiovascular disease. ''Microbiol Spectr''. 2024 Jan 11; '''12''' (1):e0105023
Identification of potential microbial risk factors associated with fecal indicator exceedances at recreational beaches. Description: Saleem, Faizan, et al. Identification of potential microbial risk factors associated with fecal indicator exceedances at recreational beaches. ''Environ Microbiome''. 2024 Jan 15; '''19''' (1):4
Abnormal Glucose Tolerance in Women Diagnosed With Gestational Diabetes (WHO 2013) 10 Years After Index Pregnancy. Description: Kgosidialwa, Oratile, et al. Abnormal Glucose Tolerance in Women Diagnosed With Gestational Diabetes (WHO 2013) 10 Years After Index Pregnancy. ''J Endocr Soc''. 2024 Jan 16; '''8''' (3):bvae013
An Antarctic lichen isolate (Cladonia borealis) genome reveals potential adaptation to extreme environments. Description: Cho, Minjoo, et al. An Antarctic lichen isolate (Cladonia borealis) genome reveals potential adaptation to extreme environments. ''Sci Rep''. 2024 Jan 16; '''14''' (1):1342
Integrative network analysis suggests prioritised drugs for atopic dermatitis. Description: Federico, Antonio, et al. Integrative network analysis suggests prioritised drugs for atopic dermatitis. ''J Transl Med''. 2024 Jan 16; '''22''' (1):64
Toxinome-the bacterial protein toxin database. Description: Danov, Aleks, et al. Toxinome-the bacterial protein toxin database. ''mBio''. 2024 Jan 16; '''15''' (1):e0191123
Crystal structure, optical characterization, conduction and relaxation mechanisms of a new hybrid compound (C(6)H(9)N(2))(2)[Sb(2)Cl(8)]. Description: Chaabane, I, et al. Crystal structure, optical characterization, conduction and relaxation mechanisms of a new hybrid compound (C(6)H(9)N(2))(2)[Sb(2)Cl(8)]. ''RSC Adv''. 2024 Jan 17; '''14''' (5):3588-3598
Comparative analysis of retroviral Gag-host cell interactions: focus on the nuclear interactome. Description: Lambert, Gregory S, et al. Comparative analysis of retroviral Gag-host cell interactions: focus on the nuclear interactome. ''bioRxiv''. 2024 Jan 18;
Metagenomic of Liver Tissue Identified at Least Two Genera of Totivirus-like Viruses in Molossus molossus Bats. Description: Couto, Roseane da Silva, et al. Metagenomic of Liver Tissue Identified at Least Two Genera of Totivirus-like Viruses in Molossus molossus Bats. ''Microorganisms''. 2024 Jan 19; '''12''' (1):
A comprehensive computational benchmark for evaluating deep learning-based protein function prediction approaches. Description: Wang, Wenkang, et al. A comprehensive computational benchmark for evaluating deep learning-based protein function prediction approaches. ''Brief Bioinform''. 2024 Jan 22; '''25''' (2):
The Gut Microbiome Correlated to Chemotherapy Efficacy in Diffuse Large B-Cell Lymphoma Patients. Description: Xu, Zhuo-Fan, et al. The Gut Microbiome Correlated to Chemotherapy Efficacy in Diffuse Large B-Cell Lymphoma Patients. ''Hematol Rep''. 2024 Jan 22; '''16''' (1):63-75
Bifidobacterium animalis subsp. lactis Probio-M8 alleviates abnormal behavior and regulates gut microbiota in a mouse model suffering from autism. Description: Miao, Zhuangzhuang, et al. Bifidobacterium animalis subsp. lactis Probio-M8 alleviates abnormal behavior and regulates gut microbiota in a mouse model suffering from autism. ''mSystems''. 2024 Jan 23; '''9''' (1):e0101323
Coordination chemistry effects of the space-demanding solvent molecule N,N'-dimethylpropyleneurea. Description: Lundberg, Daniel, et al. Coordination chemistry effects of the space-demanding solvent molecule N,N'-dimethylpropyleneurea. ''Dalton Trans''. 2024 Jan 23; '''53''' (4):1817-1832
Ultraconserved bacteriophage genome sequence identified in 1300-year-old human palaeofaeces. Description: Rozwalak, Piotr, et al. Ultraconserved bacteriophage genome sequence identified in 1300-year-old human palaeofaeces. ''Nat Commun''. 2024 Jan 23; '''15''' (1):495
Chromosome-level genome of spider Pardosa pseudoannulata and cuticle protein genes in environmental stresses. Description: Yu, Na, et al. Chromosome-level genome of spider Pardosa pseudoannulata and cuticle protein genes in environmental stresses. ''Sci Data''. 2024 Jan 24; '''11''' (1):121
Impact of Anthropogenic Activities on Microbial Community Structure in Riverbed Sediments of East Kazakhstan. Description: Muter, Olga, et al. Impact of Anthropogenic Activities on Microbial Community Structure in Riverbed Sediments of East Kazakhstan. ''Microorganisms''. 2024 Jan 24; '''12''' (2):
Long-term conservation tillage with reduced nitrogen fertilization intensity can improve winter wheat health via positive plant-microorganism feedback in the rhizosphere. Description: Behr, Jan Helge, et al. Long-term conservation tillage with reduced nitrogen fertilization intensity can improve winter wheat health via positive plant-microorganism feedback in the rhizosphere. ''FEMS Microbiol Ecol''. 2024 Jan 24; '''100''' (2):
Rhizosphere assembly alters along a chronosequence in the Hallstatter glacier forefield (Dachstein, Austria). Description: Wicaksono, Wisnu Adi, et al. Rhizosphere assembly alters along a chronosequence in the Hallstatter glacier forefield (Dachstein, Austria). ''FEMS Microbiol Ecol''. 2024 Jan 24; '''100''' (2):
An Oxford Nanopore Technology-Based Hepatitis B Virus Sequencing Protocol Suitable For Genomic Surveillance Within Clinical Diagnostic Settings. Description: Tshiabuila, Derek, et al. An Oxford Nanopore Technology-Based Hepatitis B Virus Sequencing Protocol Suitable For Genomic Surveillance Within Clinical Diagnostic Settings. ''medRxiv''. 2024 Jan 25;
Chromosome-level genome assembly of Hippophae gyantsensis. Description: Chen, Mingyue, et al. Chromosome-level genome assembly of Hippophae gyantsensis. ''Sci Data''. 2024 Jan 25; '''11''' (1):126
Eukaryotic genomic data uncover an extensive host range of mirusviruses. Description: Zhao, Hongda, et al. Eukaryotic genomic data uncover an extensive host range of mirusviruses. ''bioRxiv''. 2024 Jan 25;
Investigating the etiologies of non-malarial febrile illness in Senegal using metagenomic sequencing. Description: Levine, Zoe C, et al. Investigating the etiologies of non-malarial febrile illness in Senegal using metagenomic sequencing. ''Nat Commun''. 2024 Jan 25; '''15''' (1):747
Characterization and analysis of multi-organ full-length transcriptomes in Sphaeropteris brunoniana and Alsophila latebrosa highlight secondary metabolism and chloroplast RNA editing pattern of tree ferns. Description: Peng, Yang, et al. Characterization and analysis of multi-organ full-length transcriptomes in Sphaeropteris brunoniana and Alsophila latebrosa highlight secondary metabolism and chloroplast RNA editing pattern of tree ferns. ''BMC Plant Biol''. 2024 Jan 26; '''24''' (1):73
Functional Evolution of Pseudofabraea citricarpa as an Adaptation to Temperature Change. Description: Liu, Saifei, et al. Functional Evolution of Pseudofabraea citricarpa as an Adaptation to Temperature Change. ''J Fungi (Basel)''. 2024 Jan 28; '''10''' (2):
Analysis of five near-complete genome assemblies of the tomato pathogen Cladosporium fulvum uncovers additional accessory chromosomes and structural variations induced by transposable elements effecting the loss of avirulence genes. Description: Zaccaron, Alex Z, et al. Analysis of five near-complete genome assemblies of the tomato pathogen Cladosporium fulvum uncovers additional accessory chromosomes and structural variations induced by transposable elements effecting the loss of avirulence genes. ''BMC Biol''. 2024 Jan 29; '''22''' (1):25
Heat Shock Protein Genes Affect the Rapid Cold Hardening Ability of Two Invasive Tephritids. Description: Wang, Yuning, et al. Heat Shock Protein Genes Affect the Rapid Cold Hardening Ability of Two Invasive Tephritids. ''Insects''. 2024 Jan 29; '''15''' (2):
Exploring virus-host-environment interactions in a chemotrophic-based underground estuary. Description: Ghaly, Timothy M, et al. Exploring virus-host-environment interactions in a chemotrophic-based underground estuary. ''Environ Microbiome''. 2024 Jan 30; '''19''' (1):9
Integrated Transcriptomics and Metabolomics Analysis Reveals the Effects of Cutting on the Synthesis of Flavonoids and Saponins in Chinese Herbal Medicine Astragalus mongholious. Description: Guo, Xu, et al. Integrated Transcriptomics and Metabolomics Analysis Reveals the Effects of Cutting on the Synthesis of Flavonoids and Saponins in Chinese Herbal Medicine Astragalus mongholious. ''Metabolites''. 2024 Jan 30; '''14''' (2):
nail: software for high-speed, high-sensitivity protein sequence annotation. Description: Roddy, Jack W, et al. nail: software for high-speed, high-sensitivity protein sequence annotation. ''bioRxiv''. 2024 Jan 30;
Average Nucleotide Identity based Staphylococcus aureus strain grouping allows identification of strain-specific genes in the pangenome. Description: Raghuram, Vishnu, et al. Average Nucleotide Identity based Staphylococcus aureus strain grouping allows identification of strain-specific genes in the pangenome. ''bioRxiv''. 2024 Jan 31;
Unveiling CRESS DNA Virus Diversity in Oysters by Virome. Description: Zhu, Peng, et al. Unveiling CRESS DNA Virus Diversity in Oysters by Virome. ''Viruses''. 2024 Jan 31; '''16''' (2):
A Massive Proteogenomic Screen Identifies Thousands of Novel Peptides From the Human "Dark" Proteome. Description: Cao, Xiaolong, et al. A Massive Proteogenomic Screen Identifies Thousands of Novel Peptides From the Human "Dark" Proteome. ''Mol Cell Proteomics''. 2024 Feb; '''23''' (2):100719
A New Member of the Metal-Porphyrin Frameworks Family: Structure, Physicochemical Properties, Hydrogen and Carbon Dioxide Adsorption. Description: A New Member of the Metal-Porphyrin Frameworks Family: Structure, Physicochemical Properties, Hydrogen and Carbon Dioxide Adsorption. ''''. 2024 Feb; '''13''' (2):e202300100
A tick saliva serpin, IxsS17 inhibits host innate immune system proteases and enhances host colonization by Lyme disease agent. Description: Nguyen, Thu-Thuy, et al. A tick saliva serpin, IxsS17 inhibits host innate immune system proteases and enhances host colonization by Lyme disease agent. ''PLoS Pathog''. 2024 Feb; '''20''' (2):e1012032
Chromosome-level genome assembly and demographic history of Euryodendron excelsum in monotypic genus endemic to China. Description: Wang, Zheng-Feng, et al. Chromosome-level genome assembly and demographic history of Euryodendron excelsum in monotypic genus endemic to China. ''DNA Res''. 2024 Feb 1; '''31''' (1):
Comparative genomics reveals distinct diversification patterns among LysR-type transcriptional regulators in the ESKAPE pathogen Pseudomonas aeruginosa. Description: Deery, Jamie, et al. Comparative genomics reveals distinct diversification patterns among LysR-type transcriptional regulators in the ESKAPE pathogen Pseudomonas aeruginosa. ''Microb Genom''. 2024 Feb; '''10''' (2):
Differential peripheral immune signatures elicited by vegan versus ketogenic diets in humans. Description: Link, Verena M, et al. Differential peripheral immune signatures elicited by vegan versus ketogenic diets in humans. ''Nat Med''. 2024 Feb; '''30''' (2):560-572
Duck pan-genome reveals two transposon insertions caused bodyweight enlarging and white plumage phenotype formation during evolution. Description: Wang, Kejun, et al. Duck pan-genome reveals two transposon insertions caused bodyweight enlarging and white plumage phenotype formation during evolution. ''Imeta''. 2024 Feb; '''3''' (1):e154
Environmental viromes reveal global virosphere of deep-sea sediment RNA viruses. Description: Zhang, Xinyi, et al. Environmental viromes reveal global virosphere of deep-sea sediment RNA viruses. ''J Adv Res''. 2024 Feb; '''56''': 87-102
Functional and evolutionary significance of unknown genes from uncultivated taxa. Description: Rodriguez Del Rio, Alvaro, et al. Functional and evolutionary significance of unknown genes from uncultivated taxa. ''Nature''. 2024 Feb; '''626''' (7998):377-384
GH136-encoding gene (perB) is involved in gut colonization and persistence by Bifidobacterium bifidum PRL2010. Description: Rizzo, Sonia Mirjam, et al. GH136-encoding gene (perB) is involved in gut colonization and persistence by Bifidobacterium bifidum PRL2010. ''Microb Biotechnol''. 2024 Feb; '''17''' (2):e14406
Hiding in plain sight: The discovery of complete genomes of 11 hypothetical spindle-shaped viruses that putatively infect mesophilic ammonia-oxidizing archaea. Description: Ni, Yimin, et al. Hiding in plain sight: The discovery of complete genomes of 11 hypothetical spindle-shaped viruses that putatively infect mesophilic ammonia-oxidizing archaea. ''Environ Microbiol Rep''. 2024 Feb; '''16''' (1):e13230
Long non-coding RNAs mediate fish gene expression in response to ocean acidification. Description: Kang, Jingliang, et al. Long non-coding RNAs mediate fish gene expression in response to ocean acidification. ''Evol Appl''. 2024 Feb; '''17''' (2):e13655
Marine picoplankton metagenomes and MAGs from eleven vertical profiles obtained by the Malaspina Expedition. Description: Sanchez, Pablo, et al. Marine picoplankton metagenomes and MAGs from eleven vertical profiles obtained by the Malaspina Expedition. ''Sci Data''. 2024 Feb 1; '''11''' (1):154
The Genome of Plasmodium gonderi: Insights into the Evolution of Human Malaria Parasites. Description: Cepeda, Axl S, et al. The Genome of Plasmodium gonderi: Insights into the Evolution of Human Malaria Parasites. ''Genome Biol Evol''. 2024 Feb 1; '''16''' (2):
ViromeFlowX: a Comprehensive Nextflow-based Automated Workflow for Mining Viral Genomes from Metagenomic Sequencing Data. Description: Wang, Xiaokai, et al. ViromeFlowX: a Comprehensive Nextflow-based Automated Workflow for Mining Viral Genomes from Metagenomic Sequencing Data. ''Microb Genom''. 2024 Feb; '''10''' (2):
Washed microbiota transplantation reduces glycemic variability in unstable diabetes. Description: Li, Yangyang, et al. Washed microbiota transplantation reduces glycemic variability in unstable diabetes. ''J Diabetes''. 2024 Feb; '''16''' (2):e13485
Two chromosome-level genomes of Smittia aterrima and Smittia pratorum (Diptera, Chironomidae). Description: Fu, Yue, et al. Two chromosome-level genomes of Smittia aterrima and Smittia pratorum (Diptera, Chironomidae). ''Sci Data''. 2024 Feb 3; '''11''' (1):165
Gut microbiota-derived LCA mediates the protective effect of PEDV infection in piglets. Description: Xing, Jun-Hong, et al. Gut microbiota-derived LCA mediates the protective effect of PEDV infection in piglets. ''Microbiome''. 2024 Feb 5; '''12''' (1):20
A broad wastewater screening and clinical data surveillance for virus-related diseases in the metropolitan Detroit area in Michigan. Description: Li, Yabing, et al. A broad wastewater screening and clinical data surveillance for virus-related diseases in the metropolitan Detroit area in Michigan. ''Hum Genomics''. 2024 Feb 6; '''18''' (1):14
fosA11, a novel chromosomal-encoded fosfomycin resistance gene identified in Providencia rettgeri. Description: Lu, Wei, et al. fosA11, a novel chromosomal-encoded fosfomycin resistance gene identified in Providencia rettgeri. ''Microbiol Spectr''. 2024 Feb 6; '''12''' (2):e0254223
Oral microbiome associated with differential ratios of Porphyromonas gingivalis and Streptococcus cristatus. Description: Wang, Qingguo, et al. Oral microbiome associated with differential ratios of Porphyromonas gingivalis and Streptococcus cristatus. ''Microbiol Spectr''. 2024 Feb 6; '''12''' (2):e0348223
Prophage enhances the ability of deep-sea bacterium Shewanella psychrophila WP2 to utilize D-amino acid. Description: Tan, Xiaoli, et al. Prophage enhances the ability of deep-sea bacterium Shewanella psychrophila WP2 to utilize D-amino acid. ''Microbiol Spectr''. 2024 Feb 6; '''12''' (2):e0326323
Temporal development and potential interactions between the gut microbiome and resistome in early childhood. Description: Zhao, Lanlan, et al. Temporal development and potential interactions between the gut microbiome and resistome in early childhood. ''Microbiol Spectr''. 2024 Feb 6; '''12''' (2):e0317723
Viral Communities Contribute More to the Lysis of Antibiotic-Resistant Bacteria than the Transduction of Antibiotic Resistance Genes in Anaerobic Digestion Revealed by Metagenomics. Description: Zhang, Junya, et al. Viral Communities Contribute More to the Lysis of Antibiotic-Resistant Bacteria than the Transduction of Antibiotic Resistance Genes in Anaerobic Digestion Revealed by Metagenomics. ''Environ Sci Technol''. 2024 Feb 6; '''58''' (5):2346-2359
Chromosome-level genome assembly of navel orange cv. Gannanzao (Citrus sinensis Osbeck cv. Gannanzao). Description: Xiong, Zhiwei, et al. Chromosome-level genome assembly of navel orange cv. Gannanzao (Citrus sinensis Osbeck cv. Gannanzao). ''G3 (Bethesda)''. 2024 Feb 7; '''14''' (2):
High-quality genome of the zoophytophagous stink bug, Nesidiocoris tenuis, informs their food habit adaptation. Description: Shibata, Tomofumi, et al. High-quality genome of the zoophytophagous stink bug, Nesidiocoris tenuis, informs their food habit adaptation. ''G3 (Bethesda)''. 2024 Feb 7; '''14''' (2):
Metal Complexes Containing Homoleptic Diorganoselenium(II) Ligands: Synthesis, Characterization and Investigation of Optical Properties. Description: Dumitras, Darius, et al. Metal Complexes Containing Homoleptic Diorganoselenium(II) Ligands: Synthesis, Characterization and Investigation of Optical Properties. ''Molecules''. 2024 Feb 8; '''29''' (4):
Microbial-derived imidazole propionate links the heart failure-associated microbiome alterations to disease severity. Description: Raju, Sajan C, et al. Microbial-derived imidazole propionate links the heart failure-associated microbiome alterations to disease severity. ''Genome Med''. 2024 Feb 8; '''16''' (1):27
Functional analysis of the AUG initiator codon context reveals novel conserved sequences that disfavor mRNA translation in eukaryotes. Description: Hernandez, Greco, et al. Functional analysis of the AUG initiator codon context reveals novel conserved sequences that disfavor mRNA translation in eukaryotes. ''Nucleic Acids Res''. 2024 Feb 9; '''52''' (3):1064-1079
Snowprint: a predictive tool for genetic biosensor discovery. Description: d'Oelsnitz, Simon, et al. Snowprint: a predictive tool for genetic biosensor discovery. ''Commun Biol''. 2024 Feb 9; '''7''' (1):163
A high-quality genome assembly of the waterlily aphid Rhopalosiphum nymphaeae. Description: Wang, Yangzi, et al. A high-quality genome assembly of the waterlily aphid Rhopalosiphum nymphaeae. ''Sci Data''. 2024 Feb 13; '''11''' (1):194
Isolation, characterization, and circulation sphere of a filovirus in fruit bats. Description: He, Biao, et al. Isolation, characterization, and circulation sphere of a filovirus in fruit bats. ''Proc Natl Acad Sci U S A''. 2024 Feb 13; '''121''' (7):e2313789121
Metagenomic analysis of carbohydrate-active enzymes and their contribution to marine sediment biodiversity. Description: Lopez-Sanchez, Rafael, et al. Metagenomic analysis of carbohydrate-active enzymes and their contribution to marine sediment biodiversity. ''World J Microbiol Biotechnol''. 2024 Feb 13; '''40''' (3):95
Novel insights into the rhizosphere and seawater microbiome of Zostera marina in diverse mariculture zones. Description: Sun, Hao, et al. Novel insights into the rhizosphere and seawater microbiome of Zostera marina in diverse mariculture zones. ''Microbiome''. 2024 Feb 14; '''12''' (1):27
Prevotella copri variants among a single host diverge in sphingolipid production. Description: Xiao, Xieyue, et al. Prevotella copri variants among a single host diverge in sphingolipid production. ''mBio''. 2024 Feb 14; '''15''' (2):e0240923
Metagenomic Analysis of Antarctic Ocean near the King Sejong Station Reveals the Diversity of Carotenoid Biosynthetic Genes. Description: Cho, Woo Yeon, et al. Metagenomic Analysis of Antarctic Ocean near the King Sejong Station Reveals the Diversity of Carotenoid Biosynthetic Genes. ''Microorganisms''. 2024 Feb 15; '''12''' (2):
A genome and gene catalog of the aquatic microbiomes of the Tibetan Plateau. Description: Cheng, Mingyue, et al. A genome and gene catalog of the aquatic microbiomes of the Tibetan Plateau. ''Nat Commun''. 2024 Feb 16; '''15''' (1):1438
Analysis of Antibiotic Resistance Genes in Water Reservoirs and Related Wastewater from Animal Farms in Central China. Description: Rui, Yapei, et al. Analysis of Antibiotic Resistance Genes in Water Reservoirs and Related Wastewater from Animal Farms in Central China. ''Microorganisms''. 2024 Feb 16; '''12''' (2):
Distinct regulatory networks control toxin gene expression in elapid and viperid snakes. Description: Modahl, Cassandra M, et al. Distinct regulatory networks control toxin gene expression in elapid and viperid snakes. ''BMC Genomics''. 2024 Feb 16; '''25''' (1):186
A chromosome-level genome assembly of the forestry pest Coronaproctus castanopsis. Description: Huang, Yi-Xin, et al. A chromosome-level genome assembly of the forestry pest Coronaproctus castanopsis. ''Sci Data''. 2024 Feb 17; '''11''' (1):218
Green Waste Compost Impacts Microbial Functions Related to Carbohydrate Use and Active Dispersal in Plant Pathogen-Infested Soil. Description: LeBlanc, Nicholas R, et al. Green Waste Compost Impacts Microbial Functions Related to Carbohydrate Use and Active Dispersal in Plant Pathogen-Infested Soil. ''Microb Ecol''. 2024 Feb 17; '''87''' (1):44
Transcriptomics Provide Insights into the Photoperiodic Regulation of Reproductive Diapause in the Green Lacewing, Chrysoperla nipponensis (Okamoto) (Neuroptera: Chrysopidae). Description: Liu, Shaoye, et al. Transcriptomics Provide Insights into the Photoperiodic Regulation of Reproductive Diapause in the Green Lacewing, Chrysoperla nipponensis (Okamoto) (Neuroptera: Chrysopidae). ''Insects''. 2024 Feb 17; '''15''' (2):
Unveiling the microbial communities and metabolic pathways of Keem, a traditional starter culture, through whole-genome sequencing. Description: Rana, Babita, et al. Unveiling the microbial communities and metabolic pathways of Keem, a traditional starter culture, through whole-genome sequencing. ''Sci Rep''. 2024 Feb 18; '''14''' (1):4031
Bacterial degradation of ctenophore Mnemiopsis leidyi organic matter. Description: Fadeev, Eduard, et al. Bacterial degradation of ctenophore Mnemiopsis leidyi organic matter. ''mSystems''. 2024 Feb 20; '''9''' (2):e0126423
Host-gut microbiota interactions shape parasite infections in farmed Atlantic salmon. Description: Brealey, Jaelle C, et al. Host-gut microbiota interactions shape parasite infections in farmed Atlantic salmon. ''mSystems''. 2024 Feb 20; '''9''' (2):e0104323
Integrated meta-omics reveals the regulatory landscape involved in lipid metabolism between pig breeds. Description: Sun, Jiajie, et al. Integrated meta-omics reveals the regulatory landscape involved in lipid metabolism between pig breeds. ''Microbiome''. 2024 Feb 20; '''12''' (1):33
Ruminal microbiota-host crosstalks promote ruminal epithelial development in neonatal lambs with alfalfa hay introduction. Description: Bian, Gaorui, et al. Ruminal microbiota-host crosstalks promote ruminal epithelial development in neonatal lambs with alfalfa hay introduction. ''mSystems''. 2024 Feb 20; '''9''' (2):e0103423
Virus-prokaryote infection pairs associated with prokaryotic production in a freshwater lake. Description: Shen, Shang, et al. Virus-prokaryote infection pairs associated with prokaryotic production in a freshwater lake. ''mSystems''. 2024 Feb 20; '''9''' (2):e0090623
Design, Synthesis, and Anti-Cancer Evaluation of Novel Water-Soluble Copper(I) Complexes Bearing Terpyridine and PTA Ligands. Description: Smolenski, Piotr, et al. Design, Synthesis, and Anti-Cancer Evaluation of Novel Water-Soluble Copper(I) Complexes Bearing Terpyridine and PTA Ligands. ''Molecules''. 2024 Feb 21; '''29''' (5):
Genetic and Phenotypic Characterization of Bacillus velezensis Strain BV379 for Human Probiotic Applications. Description: Brutscher, Laura M, et al. Genetic and Phenotypic Characterization of Bacillus velezensis Strain BV379 for Human Probiotic Applications. ''Microorganisms''. 2024 Feb 21; '''12''' (3):
Identification of a novel and plant height-independent QTL for coleoptile length in barley and validation of its effect using near isogenic lines. Description: Gao, Shang, et al. Identification of a novel and plant height-independent QTL for coleoptile length in barley and validation of its effect using near isogenic lines. ''Theor Appl Genet''. 2024 Feb 21; '''137''' (3):53
Pontiella agarivorans sp. nov., a novel marine anaerobic bacterium capable of degrading macroalgal polysaccharides and fixing nitrogen. Description: Liu, Na, et al. Pontiella agarivorans sp. nov., a novel marine anaerobic bacterium capable of degrading macroalgal polysaccharides and fixing nitrogen. ''Appl Environ Microbiol''. 2024 Feb 21; '''90''' (2):e0091423
Co-evolution of gene transfer agents and their alphaproteobacterial hosts. Description: Kogay, Roman, et al. Co-evolution of gene transfer agents and their alphaproteobacterial hosts. ''J Bacteriol''. 2024 Feb 22; '''206''' (2):e0039823
Mechanism of 2'-fucosyllactose degradation by human-associated Akkermansia. Description: Padilla, Loren, et al. Mechanism of 2'-fucosyllactose degradation by human-associated Akkermansia. ''J Bacteriol''. 2024 Feb 22; '''206''' (2):e0033423
Novel functional insights into the microbiome inhabiting marine plastic debris: critical considerations to counteract the challenges of thin biofilms using multi-omics and comparative metaproteomics. Description: Messer, Lauren F, et al. Novel functional insights into the microbiome inhabiting marine plastic debris: critical considerations to counteract the challenges of thin biofilms using multi-omics and comparative metaproteomics. ''Microbiome''. 2024 Feb 22; '''12''' (1):36
Chromosome-level genome assembly of the silver pomfret Pampus argenteus. Description: Wei, Jiehong, et al. Chromosome-level genome assembly of the silver pomfret Pampus argenteus. ''Sci Data''. 2024 Feb 23; '''11''' (1):234
Gut microbiota predicts severity and reveals novel metabolic signatures in acute pancreatitis. Description: Ammer-Herrmenau, Christoph, et al. Gut microbiota predicts severity and reveals novel metabolic signatures in acute pancreatitis. ''Gut''. 2024 Feb 23; '''73''' (3):485-495
Multi-omics reveal mechanisms of high enteral starch diet mediated colonic dysbiosis via microbiome-host interactions in young ruminant. Description: Jin, Chunjia, et al. Multi-omics reveal mechanisms of high enteral starch diet mediated colonic dysbiosis via microbiome-host interactions in young ruminant. ''Microbiome''. 2024 Feb 24; '''12''' (1):38
Direct Population of Triplet States for Efficient Organic Afterglow through the Intra/Intermolecular Heavy-Atom Effect. Description: Yuan, Jie, et al. Direct Population of Triplet States for Efficient Organic Afterglow through the Intra/Intermolecular Heavy-Atom Effect. ''Molecules''. 2024 Feb 26; '''29''' (5):
Fine Tuning the Hydrophobicity of a New Three-Dimensional Cu(2+) MOF through Single Crystal Coordinating Ligand Exchange Transformations. Description: Panagiotou, Nikos, et al. Fine Tuning the Hydrophobicity of a New Three-Dimensional Cu(2+) MOF through Single Crystal Coordinating Ligand Exchange Transformations. ''Inorg Chem''. 2024 Feb 26; '''63''' (8):3824-3834
Metabolic Dysfunction Associated Liver Disease in Patients Undergoing Coronary Computed Tomography Angiography. Description: Orzan, Rares Ilie, et al. Metabolic Dysfunction Associated Liver Disease in Patients Undergoing Coronary Computed Tomography Angiography. ''J Cardiovasc Dev Dis''. 2024 Feb 26; '''11''' (3):
Time-shifted expression of acetoclastic and methylotrophic methanogenesis by a single Methanosarcina genomospecies predominates the methanogen dynamics in Philippine rice field soil. Description: Li, Xin, et al. Time-shifted expression of acetoclastic and methylotrophic methanogenesis by a single Methanosarcina genomospecies predominates the methanogen dynamics in Philippine rice field soil. ''Microbiome''. 2024 Feb 26; '''12''' (1):39
Diversity of astroviruses in wild animals in Yunnan province, China. Description: Huang, Xingyu, et al. Diversity of astroviruses in wild animals in Yunnan province, China. ''Virol J''. 2024 Feb 27; '''21''' (1):51
Oral supplementation of gut microbial metabolite indole-3-acetate alleviates diet-induced steatosis and inflammation in mice. Description: Ding, Yufang, et al. Oral supplementation of gut microbial metabolite indole-3-acetate alleviates diet-induced steatosis and inflammation in mice. ''Elife''. 2024 Feb 27; '''12''':
Long-term beneficial effect of faecal microbiota transplantation on colonisation of multidrug-resistant bacteria and resistome abundance in patients with recurrent Clostridioides difficile infection. Description: Nooij, Sam, et al. Long-term beneficial effect of faecal microbiota transplantation on colonisation of multidrug-resistant bacteria and resistome abundance in patients with recurrent Clostridioides difficile infection. ''Genome Med''. 2024 Feb 28; '''16''' (1):37
Transcriptomic Responses to Koi Herpesvirus in Isolated Blood Leukocytes from Infected Common Carp. Description: Cano, Irene, et al. Transcriptomic Responses to Koi Herpesvirus in Isolated Blood Leukocytes from Infected Common Carp. ''Viruses''. 2024 Feb 28; '''16''' (3):
A metagenomic catalog of the early-life human gut virome. Description: Zeng, Shuqin, et al. A metagenomic catalog of the early-life human gut virome. ''Nat Commun''. 2024 Feb 29; '''15''' (1):1864
Evaluating the effect of pore size for 3d-printed bone scaffolds. Description: Seehanam, Saran, et al. Evaluating the effect of pore size for 3d-printed bone scaffolds. ''Heliyon''. 2024 Feb 29; '''10''' (4):e26005
Viral potential to modulate microbial methane metabolism varies by habitat. Description: Zhong, Zhi-Ping, et al. Viral potential to modulate microbial methane metabolism varies by habitat. ''Nat Commun''. 2024 Feb 29; '''15''' (1):1857
A Synthetic Microbiome Based on Dominant Microbes in Wild Rice Rhizosphere to Promote Sulfur Utilization. Description: Wang, Changji, et al. A Synthetic Microbiome Based on Dominant Microbes in Wild Rice Rhizosphere to Promote Sulfur Utilization. ''Rice (N Y)''. 2024 Mar 1; '''17''' (1):18
A toolbox for genetic manipulation in intestinal Clostridium symbiosum. Description: Yang, Pengjie, et al. A toolbox for genetic manipulation in intestinal Clostridium symbiosum. ''Synth Syst Biotechnol''. 2024 Mar; '''9''' (1):43-54
Cost-utility of real-time continuous glucose monitoring versus self-monitoring of blood glucose in people with insulin-treated Type II diabetes in France. Description: Alshannaq, Hamza, et al. Cost-utility of real-time continuous glucose monitoring versus self-monitoring of blood glucose in people with insulin-treated Type II diabetes in France. ''J Comp Eff Res''. 2024 Mar; '''13''' (3):e230174
Diverse plasmid systems and their ecology across human gut metagenomes revealed by PlasX and MobMess. Description: Yu, Michael K, et al. Diverse plasmid systems and their ecology across human gut metagenomes revealed by PlasX and MobMess. ''Nat Microbiol''. 2024 Mar; '''9''' (3):830-847
Epidermal microorganisms contributed to the toxic mechanism of nZVI and TCEP in earthworms by robbing metal elements and nutrients. Description: Hou, Jie, et al. Epidermal microorganisms contributed to the toxic mechanism of nZVI and TCEP in earthworms by robbing metal elements and nutrients. ''Eco Environ Health''. 2024 Mar; '''3''' (1):80-88
Genome evolution and divergence in cis-regulatory architecture is associated with condition-responsive development in horned dung beetles. Description: Davidson, Phillip L, et al. Genome evolution and divergence in cis-regulatory architecture is associated with condition-responsive development in horned dung beetles. ''PLoS Genet''. 2024 Mar; '''20''' (3):e1011165
PlantFUNCO: Integrative Functional Genomics Database Reveals Clues into Duplicates Divergence Evolution. Description: Roces, Victor, et al. PlantFUNCO: Integrative Functional Genomics Database Reveals Clues into Duplicates Divergence Evolution. ''Mol Biol Evol''. 2024 Mar 1; '''41''' (3):
Regulatory mechanisms of dopamine metabolism in a marine Meyerozyma guilliermondii GXDK6 under NaCl stress as revealed by integrative multi-omics analysis. Description: Sun, Huijie, et al. Regulatory mechanisms of dopamine metabolism in a marine Meyerozyma guilliermondii GXDK6 under NaCl stress as revealed by integrative multi-omics analysis. ''Synth Syst Biotechnol''. 2024 Mar; '''9''' (1):115-126
[Tc(NO)(Cp)(PPh(3))Cl] and [Tc(NO)(Cp)(PPh(3))(NCCH(3))](PF(6)), and Their Reactions with Pyridine and Chalcogen Donors. Description: Ernst, Moritz Johannes, et al. [Tc(NO)(Cp)(PPh(3))Cl] and [Tc(NO)(Cp)(PPh(3))(NCCH(3))](PF(6)), and Their Reactions with Pyridine and Chalcogen Donors. ''Molecules''. 2024 Mar 1; '''29''' (5):
Unveiling genome plasticity and a novel phage in Mycoplasma felis: Genomic investigations of four feline isolates. Description: Klose, Sara M, et al. Unveiling genome plasticity and a novel phage in Mycoplasma felis: Genomic investigations of four feline isolates. ''Microb Genom''. 2024 Mar; '''10''' (3):
Chromosomal Inversions and the Demography of Speciation in Drosophila montana and Drosophila flavomontana. Description: Poikela, Noora, et al. Chromosomal Inversions and the Demography of Speciation in Drosophila montana and Drosophila flavomontana. ''Genome Biol Evol''. 2024 Mar 2; '''16''' (3):
Deciphering Microbial Communities and Distinct Metabolic Pathways in the Tangyin Hydrothermal Fields of Okinawa Trough through Metagenomic and Genomic Analyses. Description: Li, Jiake, et al. Deciphering Microbial Communities and Distinct Metabolic Pathways in the Tangyin Hydrothermal Fields of Okinawa Trough through Metagenomic and Genomic Analyses. ''Microorganisms''. 2024 Mar 4; '''12''' (3):
Lambda3: homology search for protein, nucleotide, and bisulfite-converted sequences. Description: Hauswedell, Hannes, et al. Lambda3: homology search for protein, nucleotide, and bisulfite-converted sequences. ''Bioinformatics''. 2024 Mar 4; '''40''' (3):
Chromosome-scale genome assemblies of Himalopsyche anomala and Eubasilissa splendida (Insecta: Trichoptera). Description: Ge, Xinyu, et al. Chromosome-scale genome assemblies of Himalopsyche anomala and Eubasilissa splendida (Insecta: Trichoptera). ''Sci Data''. 2024 Mar 5; '''11''' (1):267
Genome-centric analyses of 165 metagenomes show that mobile genetic elements are crucial for the transmission of antimicrobial resistance genes to pathogens in activated sludge and wastewater. Description: Abdulkadir, Nafi'u, et al. Genome-centric analyses of 165 metagenomes show that mobile genetic elements are crucial for the transmission of antimicrobial resistance genes to pathogens in activated sludge and wastewater. ''Microbiol Spectr''. 2024 Mar 5; '''12''' (3):e0291823
Global diversity of enterococci and description of 18 previously unknown species. Description: Schwartzman, Julia A, et al. Global diversity of enterococci and description of 18 previously unknown species. ''Proc Natl Acad Sci U S A''. 2024 Mar 5; '''121''' (10):e2310852121
6-Aryl-4-cycloamino-1,3,5-triazine-2-amines: synthesis, antileukemic activity, and 3D-QSAR modelling. Description: Bin Shahari, Muhammad Syafiq, et al. 6-Aryl-4-cycloamino-1,3,5-triazine-2-amines: synthesis, antileukemic activity, and 3D-QSAR modelling. ''RSC Adv''. 2024 Mar 6; '''14''' (12):8264-8282
Long read genome assembly of Automeris io (Lepidoptera: Saturniidae) an emerging model for the evolution of deimatic displays. Description: Skojec, Chelsea, et al. Long read genome assembly of Automeris io (Lepidoptera: Saturniidae) an emerging model for the evolution of deimatic displays. ''G3 (Bethesda)''. 2024 Mar 6; '''14''' (3):
Bactericera cockerelli Picorna-like Virus and Three New Viruses Found Circulating in Populations of Potato/Tomato Psyllids (Bactericera cockerelli). Description: Dahan, Jennifer, et al. Bactericera cockerelli Picorna-like Virus and Three New Viruses Found Circulating in Populations of Potato/Tomato Psyllids (Bactericera cockerelli). ''Viruses''. 2024 Mar 8; '''16''' (3):
Strain heterogeneity in a non-pathogenic fungus highlights factors contributing to virulence. Description: Rinker, David C, et al. Strain heterogeneity in a non-pathogenic fungus highlights factors contributing to virulence. ''bioRxiv''. 2024 Mar 10;
Biofilm colonization and succession in a full-scale partial nitritation-anammox moving bed biofilm reactor. Description: Suarez, Carolina, et al. Biofilm colonization and succession in a full-scale partial nitritation-anammox moving bed biofilm reactor. ''Microbiome''. 2024 Mar 12; '''12''' (1):51
Rhizoctonia solani disease suppression: addition of keratin-rich soil amendment leads to functional shifts in soil microbial communities. Description: Russ, Lina, et al. Rhizoctonia solani disease suppression: addition of keratin-rich soil amendment leads to functional shifts in soil microbial communities. ''FEMS Microbiol Ecol''. 2024 Mar 12; '''100''' (4):
Rubisco is evolving for improved catalytic efficiency and CO(2) assimilation in plants. Description: Bouvier, Jacques W, et al. Rubisco is evolving for improved catalytic efficiency and CO(2) assimilation in plants. ''Proc Natl Acad Sci U S A''. 2024 Mar 12; '''121''' (11):e2321050121
Ammonia stress-induced heat shock factor 1 enhances white spot syndrome virus infection by targeting the interferon-like system in shrimp. Description: Wang, Xin-Xin, et al. Ammonia stress-induced heat shock factor 1 enhances white spot syndrome virus infection by targeting the interferon-like system in shrimp. ''mBio''. 2024 Mar 13; '''15''' (3):e0313623
Comparative genomics of four lactic acid bacteria identified with Vitek MS (MALDI-TOF) and whole-genome sequencing. Description: Kahraman-Ilikkan, Ozge. Comparative genomics of four lactic acid bacteria identified with Vitek MS (MALDI-TOF) and whole-genome sequencing. ''Mol Genet Genomics''. 2024 Mar 13; '''299''' (1):31
Critical role of growth medium for detecting drug interactions in Gram-negative bacteria that model in vivo responses. Description: Davis, Kathleen P, et al. Critical role of growth medium for detecting drug interactions in Gram-negative bacteria that model in vivo responses. ''mBio''. 2024 Mar 13; '''15''' (3):e0015924
Impact of rumen microbiome on cattle carcass traits. Description: Sato, Yoshiaki, et al. Impact of rumen microbiome on cattle carcass traits. ''Sci Rep''. 2024 Mar 13; '''14''' (1):6064
Intestinal dual-specificity phosphatase 6 regulates the cold-induced gut microbiota remodeling to promote white adipose browning. Description: Chen, Pei-Chen, et al. Intestinal dual-specificity phosphatase 6 regulates the cold-induced gut microbiota remodeling to promote white adipose browning. ''NPJ Biofilms Microbiomes''. 2024 Mar 13; '''10''' (1):22
Learnt representations of proteins can be used for accurate prediction of small molecule binding sites on experimentally determined and predicted protein structures. Description: Carbery, Anna, et al. Learnt representations of proteins can be used for accurate prediction of small molecule binding sites on experimentally determined and predicted protein structures. ''J Cheminform''. 2024 Mar 14; '''16''' (1):32
Inoculum and pH effects on ammonium removal and microbial community dynamics in aquaponics systems. Description: Derikvand, Peyman, et al. Inoculum and pH effects on ammonium removal and microbial community dynamics in aquaponics systems. ''iScience''. 2024 Mar 15; '''27''' (3):109073
Transcriptomic profiling of Poa pratensis L. under treatment of various phytohormones. Description: Meng, Chen, et al. Transcriptomic profiling of Poa pratensis L. under treatment of various phytohormones. ''Sci Data''. 2024 Mar 15; '''11''' (1):297
Uncovering the subtype-specific disease module and the development of drug response prediction models for glioma. Description: Munquad, Sana, et al. Uncovering the subtype-specific disease module and the development of drug response prediction models for glioma. ''Heliyon''. 2024 Mar 15; '''10''' (5):e27190
Identification of Viruses in Molossus Bats from the Brazilian Amazon: A Descriptive Metagenomic Analysis. Description: Pinheiro, Lucas Rafael Santana, et al. Identification of Viruses in Molossus Bats from the Brazilian Amazon: A Descriptive Metagenomic Analysis. ''Microorganisms''. 2024 Mar 16; '''12''' (3):
Comparative overview of multi-shell diffusion MRI models to characterize the microstructure of multiple sclerosis lesions and periplaques. Description: Vanden Bulcke, Colin, et al. Comparative overview of multi-shell diffusion MRI models to characterize the microstructure of multiple sclerosis lesions and periplaques. ''Neuroimage Clin''. 2024 Mar 18; '''42''': 103593
Encoding ordered structural complexity to covalent organic frameworks. Description: Wei, Lei, et al. Encoding ordered structural complexity to covalent organic frameworks. ''Nat Commun''. 2024 Mar 18; '''15''' (1):2411
Genetic mechanism of body size variation in groupers: Insights from phylotranscriptomics. Description: Zhang, Wei-Wei, et al. Genetic mechanism of body size variation in groupers: Insights from phylotranscriptomics. ''Zool Res''. 2024 Mar 18; '''45''' (2):314-328
Increasing transposase abundance with ocean depth correlates with a particle-associated lifestyle. Description: Zhong, Juntao, et al. Increasing transposase abundance with ocean depth correlates with a particle-associated lifestyle. ''mSystems''. 2024 Mar 19; '''9''' (3):e0006724
Metagenomic Detection and Genetic Characterization of Human Sapoviruses among Children with Acute Flaccid Paralysis in Nigeria. Description: George, Uwem Etop, et al. Metagenomic Detection and Genetic Characterization of Human Sapoviruses among Children with Acute Flaccid Paralysis in Nigeria. ''Pathogens''. 2024 Mar 19; '''13''' (3):
Microbial and metabolic profiles unveil mutualistic microbe-microbe interaction in obesity-related colorectal cancer. Description: Li, Jinming, et al. Microbial and metabolic profiles unveil mutualistic microbe-microbe interaction in obesity-related colorectal cancer. ''Cell Rep Med''. 2024 Mar 19; '''5''' (3):101429
Multidrug resistance plasmids commonly reprogram the expression of metabolic genes in Escherichia coli. Description: Hall, Rebecca J, et al. Multidrug resistance plasmids commonly reprogram the expression of metabolic genes in Escherichia coli. ''mSystems''. 2024 Mar 19; '''9''' (3):e0119323
The Home Environment Is a Reservoir for Methicillin-Resistant Coagulase-Negative Staphylococci and Mammaliicocci. Description: Roken, Mari, et al. The Home Environment Is a Reservoir for Methicillin-Resistant Coagulase-Negative Staphylococci and Mammaliicocci. ''Antibiotics (Basel)''. 2024 Mar 19; '''13''' (3):
Dynamic DNA N (6)-adenine methylation (6mA) governs the encystment process, showcased in the unicellular eukaryote Pseudocohnilembus persalinus. Description: Liu, Yongqiang, et al. Dynamic DNA N (6)-adenine methylation (6mA) governs the encystment process, showcased in the unicellular eukaryote Pseudocohnilembus persalinus. ''Genome Res''. 2024 Mar 20; '''34''' (2):256-271
Human pangenome analysis of sequences missing from the reference genome reveals their widespread evolutionary, phenotypic, and functional roles. Description: Wu, Zhikun, et al. Human pangenome analysis of sequences missing from the reference genome reveals their widespread evolutionary, phenotypic, and functional roles. ''Nucleic Acids Res''. 2024 Mar 21; '''52''' (5):2212-2230
Metagenomic Insight into the Effect of Probiotics on Nitrogen Cycle in the Coilia nasus Aquaculture Pond Water. Description: Mang, Qi, et al. Metagenomic Insight into the Effect of Probiotics on Nitrogen Cycle in the Coilia nasus Aquaculture Pond Water. ''Microorganisms''. 2024 Mar 21; '''12''' (3):
Soil Application of Bacillus subtilis Regulates Flavonoid and Alkaloids Biosynthesis in Mulberry Leaves. Description: Yu, Yanfang, et al. Soil Application of Bacillus subtilis Regulates Flavonoid and Alkaloids Biosynthesis in Mulberry Leaves. ''Metabolites''. 2024 Mar 23; '''14''' (4):
Gold(I) and Silver(I) Complexes Containing Hybrid Sulfonamide/Thiourea Ligands as Potential Leishmanicidal Agents. Description: Borges, Alice P, et al. Gold(I) and Silver(I) Complexes Containing Hybrid Sulfonamide/Thiourea Ligands as Potential Leishmanicidal Agents. ''Pharmaceutics''. 2024 Mar 25; '''16''' (4):
A near-complete genome assembly of Monochamus alternatus a major vector beetle of pinewood nematode. Description: Xing, Longsheng, et al. A near-complete genome assembly of Monochamus alternatus a major vector beetle of pinewood nematode. ''Sci Data''. 2024 Mar 26; '''11''' (1):312
Impact of Incorporating Shiitake Mushrooms (Lentinula edodes) on Microbial Community and Flavor Volatiles in Traditional Jiuqu. Description: Geng, Jingzhang, et al. Impact of Incorporating Shiitake Mushrooms (Lentinula edodes) on Microbial Community and Flavor Volatiles in Traditional Jiuqu. ''Foods''. 2024 Mar 26; '''13''' (7):
Widespread Horizontal Gene Transfer Among Animal Viruses. Description: Buck, Christopher B, et al. Widespread Horizontal Gene Transfer Among Animal Viruses. ''bioRxiv''. 2024 Mar 26;
Phenology and ecological role of aerobic anoxygenic phototrophs in freshwaters. Description: Villena-Alemany, Cristian, et al. Phenology and ecological role of aerobic anoxygenic phototrophs in freshwaters. ''Microbiome''. 2024 Mar 27; '''12''' (1):65
Host and geography impact virus diversity in New Zealand's longfin and shortfin eels. Description: Waller, Stephanie J, et al. Host and geography impact virus diversity in New Zealand's longfin and shortfin eels. ''Arch Virol''. 2024 Mar 28; '''169''' (4):85
The beneficial impacts of nano-propolis liposomes as an anti-stressor agent on broiler chickens kept under cyclic heat stress. Description: Eldiasty, Jayda G, et al. The beneficial impacts of nano-propolis liposomes as an anti-stressor agent on broiler chickens kept under cyclic heat stress. ''Poult Sci''. 2024 Mar 28; '''103''' (6):103695
A Metagenomic Investigation of Potential Health Risks and Element Cycling Functions of Bacteria and Viruses in Wastewater Treatment Plants. Description: Zhao, Haozhe, et al. A Metagenomic Investigation of Potential Health Risks and Element Cycling Functions of Bacteria and Viruses in Wastewater Treatment Plants. ''Viruses''. 2024 Mar 29; '''16''' (4):
Nuclear Receptor FTZ-F1 Controls Locust Molt by Regulating the Molting Process of Locusta migratoria. Description: Zhang, Yichao, et al. Nuclear Receptor FTZ-F1 Controls Locust Molt by Regulating the Molting Process of Locusta migratoria. ''Insects''. 2024 Mar 29; '''15''' (4):
Coconut rhinoceros beetle digestive symbiosis with potential plant cell wall degrading microbes. Description: Han, Chiao-Jung, et al. Coconut rhinoceros beetle digestive symbiosis with potential plant cell wall degrading microbes. ''NPJ Biofilms Microbiomes''. 2024 Mar 30; '''10''' (1):34
A broad host phage, CP6, for combating multidrug-resistant Campylobacter prevalent in poultry meat. Description: Zhang, Xiaoyan, et al. A broad host phage, CP6, for combating multidrug-resistant Campylobacter prevalent in poultry meat. ''Poult Sci''. 2024 Apr; '''103''' (4):103548
Accessory genes define species-specific routes to antibiotic resistance. Description: Dillon, Lucy, et al. Accessory genes define species-specific routes to antibiotic resistance. ''Life Sci Alliance''. 2024 Apr; '''7''' (4):
Bovine neutrophils kill the sexually-transmitted parasite Tritrichomonas foetus using trogocytosis. Description: Najera, Jonathan, et al. Bovine neutrophils kill the sexually-transmitted parasite Tritrichomonas foetus using trogocytosis. ''Vet Res Commun''. 2024 Apr; '''48''' (2):865-875
Chromosome-scale assembly of the streamlined picoeukaryote Picochlorum sp. SENEW3 genome reveals Rabl-like chromatin structure and potential for C(4) photosynthesis. Description: da Roza, Patrick A, et al. Chromosome-scale assembly of the streamlined picoeukaryote Picochlorum sp. SENEW3 genome reveals Rabl-like chromatin structure and potential for C(4) photosynthesis. ''Microb Genom''. 2024 Apr; '''10''' (4):
Chromosome-scale genome, together with transcriptome and metabolome, provides insights into the evolution and anthocyanin biosynthesis of Rubus rosaefolius Sm. (Rosaceae). Description: Wang, Yunsheng, et al. Chromosome-scale genome, together with transcriptome and metabolome, provides insights into the evolution and anthocyanin biosynthesis of Rubus rosaefolius Sm. (Rosaceae). ''Hortic Res''. 2024 Apr; '''11''' (4):uhae064
Dataset from RNAseq analysis of differential gene expression among developmental stages of two non-marine ostracodes. Description: Vences, Miguel, et al. Dataset from RNAseq analysis of differential gene expression among developmental stages of two non-marine ostracodes. ''Data Brief''. 2024 Apr; '''53''': 110070
Graft incompatibility between pepper and tomato can be attributed to genetic incompatibility between diverged immune systems. Description: Thomas, Hannah Rae, et al. Graft incompatibility between pepper and tomato can be attributed to genetic incompatibility between diverged immune systems. ''bioRxiv''. 2024 Apr 1;
Plant-LncPipe: a computational pipeline providing significant improvement in plant lncRNA identification. Description: Tian, Xue-Chan, et al. Plant-LncPipe: a computational pipeline providing significant improvement in plant lncRNA identification. ''Hortic Res''. 2024 Apr; '''11''' (4):uhae041
Relationships between diet and gut microbiome in an Italian and Dutch cohort: does the dietary protein to fiber ratio play a role? Description: Tagliamonte, Silvia, et al. Relationships between diet and gut microbiome in an Italian and Dutch cohort: does the dietary protein to fiber ratio play a role? ''Eur J Nutr''. 2024 Apr; '''63''' (3):741-750
Stability of gut microbiome after COVID-19 vaccination in healthy and immuno-compromised individuals. Description: Boston, Rebecca H, et al. Stability of gut microbiome after COVID-19 vaccination in healthy and immuno-compromised individuals. ''Life Sci Alliance''. 2024 Apr; '''7''' (4):
Viromes of Haemaphysalis longicornis reveal different viral abundance and diversity in free and engorged ticks. Description: Xiao, Jian, et al. Viromes of Haemaphysalis longicornis reveal different viral abundance and diversity in free and engorged ticks. ''Virol Sin''. 2024 Apr; '''39''' (2):194-204
Adaptation in Unstable Environments and Global Gene Losses: Small but Stable Gene Networks by the May-Wigner Theory. Description: Xu, Shaohua, et al. Adaptation in Unstable Environments and Global Gene Losses: Small but Stable Gene Networks by the May-Wigner Theory. ''Mol Biol Evol''. 2024 Apr 2; '''41''' (4):
Annotation of 2,507 Saccharomyces cerevisiae genomes. Description: Wang, Meng, et al. Annotation of 2,507 Saccharomyces cerevisiae genomes. ''Microbiol Spectr''. 2024 Apr 2; '''12''' (4):e0358223
A proteomics study of rheumatoid arthritis patients on etanercept identifies putative biomarkers associated with clinical outcome measures. Description: Ling, Stephanie F, et al. A proteomics study of rheumatoid arthritis patients on etanercept identifies putative biomarkers associated with clinical outcome measures. ''Rheumatology (Oxford)''. 2024 Apr 2; '''63''' (4):1015-1021
Chromosome-scale Genome Assembly of the Rough Periwinkle Littorina saxatilis. Description: De Jode, Aurelien, et al. Chromosome-scale Genome Assembly of the Rough Periwinkle Littorina saxatilis. ''Genome Biol Evol''. 2024 Apr 2; '''16''' (4):
Evolutionary insights into the emergence of virulent Leptospira spirochetes. Description: Giraud-Gatineau, Alexandre, et al. Evolutionary insights into the emergence of virulent Leptospira spirochetes. ''bioRxiv''. 2024 Apr 2;
Genetic and Functional Diversity Help Explain Pathogenic, Weakly Pathogenic, and Commensal Lifestyles in the Genus Xanthomonas. Description: Pena, Michelle M, et al. Genetic and Functional Diversity Help Explain Pathogenic, Weakly Pathogenic, and Commensal Lifestyles in the Genus Xanthomonas. ''Genome Biol Evol''. 2024 Apr 2; '''16''' (4):
Hidden diversity and potential ecological function of phosphorus acquisition genes in widespread terrestrial bacteriophages. Description: Liang, Jie-Liang, et al. Hidden diversity and potential ecological function of phosphorus acquisition genes in widespread terrestrial bacteriophages. ''Nat Commun''. 2024 Apr 2; '''15''' (1):2827
Phased Assembly of Neo-Sex Chromosomes Reveals Extensive Y Degeneration and Rapid Genome Evolution in Rumex hastatulus. Description: Sacchi, Bianca, et al. Phased Assembly of Neo-Sex Chromosomes Reveals Extensive Y Degeneration and Rapid Genome Evolution in Rumex hastatulus. ''Mol Biol Evol''. 2024 Apr 2; '''41''' (4):
Phylogenomics reveals extensive misidentification of fungal strains from the genus Aspergillus. Description: Steenwyk, Jacob L, et al. Phylogenomics reveals extensive misidentification of fungal strains from the genus Aspergillus. ''Microbiol Spectr''. 2024 Apr 2; '''12''' (4):e0398023
Phylogeny and Expansion of Serine/Threonine Kinases in Phagocytotic Bacteria in the Phylum Planctomycetota. Description: Odelgard, Anna, et al. Phylogeny and Expansion of Serine/Threonine Kinases in Phagocytotic Bacteria in the Phylum Planctomycetota. ''Genome Biol Evol''. 2024 Apr 2; '''16''' (4):
Retention of an Endosymbiont for the Production of a Single Molecule. Description: Garber, Arkadiy I, et al. Retention of an Endosymbiont for the Production of a Single Molecule. ''Genome Biol Evol''. 2024 Apr 2; '''16''' (4):
Screening potential biomarkers associated with insulin resistance in high-fat diet-fed mice by integrating metagenomics and untargeted metabolomics. Description: Zhou, Yunyan, et al. Screening potential biomarkers associated with insulin resistance in high-fat diet-fed mice by integrating metagenomics and untargeted metabolomics. ''Microbiol Spectr''. 2024 Apr 2; '''12''' (4):e0409423
Seagrass-mediated rhizosphere redox gradients are linked with ammonium accumulation driven by diazotrophs. Description: Brodersen, Kasper Elgetti, et al. Seagrass-mediated rhizosphere redox gradients are linked with ammonium accumulation driven by diazotrophs. ''Microbiol Spectr''. 2024 Apr 2; '''12''' (4):e0333523
Terrestrial Birth and Body Size Tune UCP1 Functionality in Seals. Description: Gaudry, Michael J, et al. Terrestrial Birth and Body Size Tune UCP1 Functionality in Seals. ''Mol Biol Evol''. 2024 Apr 2; '''41''' (4):
Deciphering the Genomic Landscape and Virulence Mechanisms of the Wheat Powdery Mildew Pathogen Blumeria graminis f. sp. tritici Wtn1: Insights from Integrated Genome Assembly and Conidial Transcriptomics. Description: Nallathambi, Perumal, et al. Deciphering the Genomic Landscape and Virulence Mechanisms of the Wheat Powdery Mildew Pathogen Blumeria graminis f. sp. tritici Wtn1: Insights from Integrated Genome Assembly and Conidial Transcriptomics. ''J Fungi (Basel)''. 2024 Apr 3; '''10''' (4):
Genomic insights into the evolution and adaptation of secondary metabolite gene clusters in fungicolous species Cladobotryum mycophilum ATHUM6906. Description: Christinaki, Anastasia C, et al. Genomic insights into the evolution and adaptation of secondary metabolite gene clusters in fungicolous species Cladobotryum mycophilum ATHUM6906. ''G3 (Bethesda)''. 2024 Apr 3; '''14''' (4):
Genomic language model predicts protein co-regulation and function. Description: Hwang, Yunha, et al. Genomic language model predicts protein co-regulation and function. ''Nat Commun''. 2024 Apr 3; '''15''' (1):2880
Inter-phylum circulation of a beta-lactamase-encoding gene: a rare but observable event. Description: Gschwind, Remi, et al. Inter-phylum circulation of a beta-lactamase-encoding gene: a rare but observable event. ''Antimicrob Agents Chemother''. 2024 Apr 3; '''68''' (4):e0145923
A chromosome-level genome assembly of the spider mite Tetranychus piercei McGregor. Description: Chen, Lei, et al. A chromosome-level genome assembly of the spider mite Tetranychus piercei McGregor. ''Sci Data''. 2024 Apr 5; '''11''' (1):340
Genomic characterization of a novel Hepatovirus identified in Maranhao state, Brazil. Description: de Moraes Pires, Walna Micaelle, et al. Genomic characterization of a novel Hepatovirus identified in Maranhao state, Brazil. ''Sci Rep''. 2024 Apr 5; '''14''' (1):7981
Longitudinal multi-omics analysis uncovers the altered landscape of gut microbiota and plasma metabolome in response to high altitude. Description: Han, Yang, et al. Longitudinal multi-omics analysis uncovers the altered landscape of gut microbiota and plasma metabolome in response to high altitude. ''Microbiome''. 2024 Apr 5; '''12''' (1):70
The massive 340 megabase genome of Anisogramma anomala, a biotrophic ascomycete that causes eastern filbert blight of hazelnut. Description: Cohen, Alanna B, et al. The massive 340 megabase genome of Anisogramma anomala, a biotrophic ascomycete that causes eastern filbert blight of hazelnut. ''BMC Genomics''. 2024 Apr 5; '''25''' (1):347
Emergence and genomic chion of Proteus mirabilis harboring bla(NDM-1) in Korean companion dogs. Description: Kyung, Su Min, et al. Emergence and genomic chion of Proteus mirabilis harboring bla(NDM-1) in Korean companion dogs. ''Vet Res''. 2024 Apr 9; '''55''' (1):50
Hot springs viruses at Yellowstone National Park have ancient origins and are adapted to thermophilic hosts. Description: Felipe Benites, L, et al. Hot springs viruses at Yellowstone National Park have ancient origins and are adapted to thermophilic hosts. ''Commun Biol''. 2024 Apr 9; '''7''' (1):312
Large-scale analysis of the ARF and Aux/IAA gene families in 406 horticultural and other plants. Description: Feng, Shuyan, et al. Large-scale analysis of the ARF and Aux/IAA gene families in 406 horticultural and other plants. ''Mol Hortic''. 2024 Apr 9; '''4''' (1):13
Alternations in the human skin, gut and vaginal microbiomes in perimenopausal or postmenopausal Vulvar lichen sclerosus. Description: Ma, Xiaolei, et al. Alternations in the human skin, gut and vaginal microbiomes in perimenopausal or postmenopausal Vulvar lichen sclerosus. ''Sci Rep''. 2024 Apr 10; '''14''' (1):8429
LED-induced Ru-photoredox Pd-catalyzed C-H arylation of (6-phenylpyridin-2-yl)pyrimidines and heteroaryl counterparts. Description: Antoniou, Ioakeim M, et al. LED-induced Ru-photoredox Pd-catalyzed C-H arylation of (6-phenylpyridin-2-yl)pyrimidines and heteroaryl counterparts. ''RSC Adv''. 2024 Apr 10; '''14''' (17):12179-12191
Substantial viral diversity in bats and rodents from East Africa: insights into evolution, recombination, and cocirculation. Description: Wang, Daxi, et al. Substantial viral diversity in bats and rodents from East Africa: insights into evolution, recombination, and cocirculation. ''Microbiome''. 2024 Apr 10; '''12''' (1):72
Rationally designed probiotics prevent shrimp white feces syndrome via the probiotics-gut microbiome-immunity axis. Description: Sha, Haonan, et al. Rationally designed probiotics prevent shrimp white feces syndrome via the probiotics-gut microbiome-immunity axis. ''NPJ Biofilms Microbiomes''. 2024 Apr 11; '''10''' (1):40
Comparative Analysis of Viromes Identified in Multiple Macrofungi. Description: Zhou, Kang, et al. Comparative Analysis of Viromes Identified in Multiple Macrofungi. ''Viruses''. 2024 Apr 12; '''16''' (4):
The transcriptome assembly of the European freshwater mussel Unio elongatulus C. Pfeiffer, 1825. Description: Gomes-Dos-Santos, Andre, et al. The transcriptome assembly of the European freshwater mussel Unio elongatulus C. Pfeiffer, 1825. ''Sci Data''. 2024 Apr 12; '''11''' (1):377
Developmental Dynamics of the Gut Virome in Tibetan Pigs at High Altitude: A Metagenomic Perspective across Age Groups. Description: Luo, Runbo, et al. Developmental Dynamics of the Gut Virome in Tibetan Pigs at High Altitude: A Metagenomic Perspective across Age Groups. ''Viruses''. 2024 Apr 14; '''16''' (4):
Benchmarking bioinformatic virus identification tools using real-world metagenomic data across biomes. Description: Wu, Ling-Yi, et al. Benchmarking bioinformatic virus identification tools using real-world metagenomic data across biomes. ''Genome Biol''. 2024 Apr 15; '''25''' (1):97
Diversity and potential host-interactions of viruses inhabiting deep-sea seamount sediments. Description: Yu, Meishun, et al. Diversity and potential host-interactions of viruses inhabiting deep-sea seamount sediments. ''Nat Commun''. 2024 Apr 15; '''15''' (1):3228
Integrated transcriptomic and metabolomic analysis reveals the regulation mechanism of early bolting and flowering in two cultivars of Angelica sinensis. Description: Zhu, Chenghao, et al. Integrated transcriptomic and metabolomic analysis reveals the regulation mechanism of early bolting and flowering in two cultivars of Angelica sinensis. ''Heliyon''. 2024 Apr 15; '''10''' (7):e28636
Transcriptomic and Metatranscriptomic Analyses Provide New Insights into the Response of the Pea Aphid Acyrthosiphon pisum (Hemiptera: Aphididae) to Acetamiprid. Description: Cai, Zhiyan, et al. Transcriptomic and Metatranscriptomic Analyses Provide New Insights into the Response of the Pea Aphid Acyrthosiphon pisum (Hemiptera: Aphididae) to Acetamiprid. ''Insects''. 2024 Apr 15; '''15''' (4):
Discovery and characterization of novel DNA viruses in Apis mellifera: expanding the honey bee virome through metagenomic analysis. Description: Kadleckova, Dominika, et al. Discovery and characterization of novel DNA viruses in Apis mellifera: expanding the honey bee virome through metagenomic analysis. ''mSystems''. 2024 Apr 16; '''9''' (4):e0008824
Seasonal and geographical impact on the Irish raw milk microbiota correlates with chemical composition and climatic variables. Description: Yap, Min, et al. Seasonal and geographical impact on the Irish raw milk microbiota correlates with chemical composition and climatic variables. ''mSystems''. 2024 Apr 16; '''9''' (4):e0129023
A novel glycoside hydrolase 43-like enzyme from Clostridium boliviensis is an endo-xylanase and a candidate for xylooligosaccharide production from different xylan substrates. Description: Salas-Veizaga, Daniel Martin, et al. A novel glycoside hydrolase 43-like enzyme from Clostridium boliviensis is an endo-xylanase and a candidate for xylooligosaccharide production from different xylan substrates. ''Appl Environ Microbiol''. 2024 Apr 17; '''90''' (4):e0222323
Elucidating human gut microbiota interactions that robustly inhibit diverse Clostridioides difficile strains across different nutrient landscapes. Description: Sulaiman, Jordy Evan, et al. Elucidating human gut microbiota interactions that robustly inhibit diverse Clostridioides difficile strains across different nutrient landscapes. ''bioRxiv''. 2024 Apr 17;
Genetic barriers more than environmental associations explain Serratia marcescens population structure. Description: Sterzi, Lodovico, et al. Genetic barriers more than environmental associations explain Serratia marcescens population structure. ''Commun Biol''. 2024 Apr 17; '''7''' (1):468
Phylogenomic profiles of whole-genome duplications in Poaceae and landscape of differential duplicate retention and losses among major Poaceae lineages. Description: Zhang, Taikui, et al. Phylogenomic profiles of whole-genome duplications in Poaceae and landscape of differential duplicate retention and losses among major Poaceae lineages. ''Nat Commun''. 2024 Apr 17; '''15''' (1):3305
Transcriptome Analysis Provides Insights into Water Immersion Promoting the Decocooning of Osmia excavata Alfken. Description: Wang, Guiping, et al. Transcriptome Analysis Provides Insights into Water Immersion Promoting the Decocooning of Osmia excavata Alfken. ''Insects''. 2024 Apr 18; '''15''' (4):
Heterochronic shift in gene expression leads to ontogenetic morphological divergence between two closely related polyploid species. Description: Searle, Peter C, et al. Heterochronic shift in gene expression leads to ontogenetic morphological divergence between two closely related polyploid species. ''iScience''. 2024 Apr 19; '''27''' (4):109566
Integrating taxonomic signals from MAGs and contigs improves read annotation and taxonomic profiling of metagenomes. Description: Hauptfeld, Ernestina, et al. Integrating taxonomic signals from MAGs and contigs improves read annotation and taxonomic profiling of metagenomes. ''Nat Commun''. 2024 Apr 20; '''15''' (1):3373
Chromosome-scale genome assembly and annotation of Cotoneaster glaucophyllus. Description: Meng, Kaikai, et al. Chromosome-scale genome assembly and annotation of Cotoneaster glaucophyllus. ''Sci Data''. 2024 Apr 22; '''11''' (1):406
The Comparative Genomics of Botryosphaeriaceae Suggests Gene Families of Botryosphaeria dothidea Related to Pathogenicity on Chinese Hickory Tree. Description: Liang, Dong, et al. The Comparative Genomics of Botryosphaeriaceae Suggests Gene Families of Botryosphaeria dothidea Related to Pathogenicity on Chinese Hickory Tree. ''J Fungi (Basel)''. 2024 Apr 22; '''10''' (4):
Anaerostipes hadrus, a butyrate-producing bacterium capable of metabolizing 5-fluorouracil. Description: Liu, Danping, et al. Anaerostipes hadrus, a butyrate-producing bacterium capable of metabolizing 5-fluorouracil. ''mSphere''. 2024 Apr 23; '''9''' (4):e0081623
Camel Milk Resistome in Kuwait: Genotypic and Phenotypic Characterization. Description: Rahmeh, Rita, et al. Camel Milk Resistome in Kuwait: Genotypic and Phenotypic Characterization. ''Antibiotics (Basel)''. 2024 Apr 23; '''13''' (5):
Catalytic specificity and crystal structure of cystathionine gamma-lyase from Pseudomonas aeruginosa. Description: Pedretti, Marco, et al. Catalytic specificity and crystal structure of cystathionine gamma-lyase from Pseudomonas aeruginosa. ''Sci Rep''. 2024 Apr 23; '''14''' (1):9364
Chromosome-level genome assembly of the predatory stink bug Arma custos. Description: Wang, Yuqin, et al. Chromosome-level genome assembly of the predatory stink bug Arma custos. ''Sci Data''. 2024 Apr 23; '''11''' (1):417
What one genus of showy moths can say about migration, adaptation, and wing pattern. Description: Zhang, Jing, et al. What one genus of showy moths can say about migration, adaptation, and wing pattern. ''Proc Natl Acad Sci U S A''. 2024 Apr 23; '''121''' (17):e2319726121
Bacteriophage EPP-1, a potential antibiotic alternative for controlling edwardsiellosis caused by Edwardsiella piscicida while mitigating drug-resistant gene dissemination. Description: Han, Ganghua, et al. Bacteriophage EPP-1, a potential antibiotic alternative for controlling edwardsiellosis caused by Edwardsiella piscicida while mitigating drug-resistant gene dissemination. ''Sci Rep''. 2024 Apr 24; '''14''' (1):9399
Deciphering the Diversity in Bacterial Transporters That Salvage Queuosine Precursors. Description: Quaiyum, Samia, et al. Deciphering the Diversity in Bacterial Transporters That Salvage Queuosine Precursors. ''Epigenomes''. 2024 Apr 25; '''8''' (2):
Full-length transcriptome analysis of a bloom-forming dinoflagellate Prorocentrum shikokuense (Dinophyceae). Description: Pan, Xiaohui, et al. Full-length transcriptome analysis of a bloom-forming dinoflagellate Prorocentrum shikokuense (Dinophyceae). ''Sci Data''. 2024 Apr 25; '''11''' (1):430
Gut microbiota composition and metabolic characteristics in patients with Craniopharyngioma. Description: Liu, Chunhui, et al. Gut microbiota composition and metabolic characteristics in patients with Craniopharyngioma. ''BMC Cancer''. 2024 Apr 25; '''24''' (1):521
Improved mouse models of the small intestine microbiota using region-specific sampling from humans. Description: Culver, Rebecca N, et al. Improved mouse models of the small intestine microbiota using region-specific sampling from humans. ''bioRxiv''. 2024 Apr 25;
The genome of the colonial hydroid Hydractinia reveals that their stem cells use a toolkit of evolutionarily shared genes with all animals. Description: Schnitzler, Christine E, et al. The genome of the colonial hydroid Hydractinia reveals that their stem cells use a toolkit of evolutionarily shared genes with all animals. ''Genome Res''. 2024 Apr 25; '''34''' (3):498-513
Chromosome-level genome assembly of the pygmy grasshopper Eucriotettix oculatus (Orthoptera: Tetrigoidea). Description: Li, Ran, et al. Chromosome-level genome assembly of the pygmy grasshopper Eucriotettix oculatus (Orthoptera: Tetrigoidea). ''Sci Data''. 2024 Apr 26; '''11''' (1):431
Direct Degradation of Fresh and Dried Macroalgae by Agarivorans albus B2Z047. Description: Gong, Ya, et al. Direct Degradation of Fresh and Dried Macroalgae by Agarivorans albus B2Z047. ''Mar Drugs''. 2024 Apr 28; '''22''' (5):
Castration alters the ileum microbiota of Holstein bulls and promotes beef flavor compounds. Description: Shi, Jinping, et al. Castration alters the ileum microbiota of Holstein bulls and promotes beef flavor compounds. ''BMC Genomics''. 2024 Apr 29; '''25''' (1):426
Dithienylethene-Based Photoswitchable Phosphines for the Palladium-Catalyzed Stille Coupling Reaction. Description: Sherstiuk, Anastasiia, et al. Dithienylethene-Based Photoswitchable Phosphines for the Palladium-Catalyzed Stille Coupling Reaction. ''Inorg Chem''. 2024 Apr 29; '''63''' (17):7652-7664
Gut microbiome composition and metabolic activity in women with diverticulitis. Description: Ma, Wenjie, et al. Gut microbiome composition and metabolic activity in women with diverticulitis. ''Nat Commun''. 2024 Apr 29; '''15''' (1):3612
Land conversion to agriculture induces taxonomic homogenization of soil microbial communities globally. Description: Peng, Ziheng, et al. Land conversion to agriculture induces taxonomic homogenization of soil microbial communities globally. ''Nat Commun''. 2024 Apr 29; '''15''' (1):3624
NEAT1 inhibits the angiogenic activity of cerebral arterial endothelial cells by inducing the M1 polarization of microglia through the AMPK signaling pathway. Description: Chen, Ting, et al. NEAT1 inhibits the angiogenic activity of cerebral arterial endothelial cells by inducing the M1 polarization of microglia through the AMPK signaling pathway. ''Cell Mol Biol Lett''. 2024 Apr 29; '''29''' (1):62
Sulfur oxidation and reduction are coupled to nitrogen fixation in the roots of the salt marsh foundation plant Spartina alterniflora. Description: Rolando, J L, et al. Sulfur oxidation and reduction are coupled to nitrogen fixation in the roots of the salt marsh foundation plant Spartina alterniflora. ''Nat Commun''. 2024 Apr 29; '''15''' (1):3607
Effect of Stevioside (Stevia rebaudiana) on Entamoeba histolytica Trophozoites. Description: Ortega-Carballo, Karla Jocelyn, et al. Effect of Stevioside (Stevia rebaudiana) on Entamoeba histolytica Trophozoites. ''Pathogens''. 2024 Apr 30; '''13''' (5):
A pan-genome of 69 Arabidopsis thaliana accessions reveals a conserved genome structure throughout the global species range. Description: Lian, Qichao, et al. A pan-genome of 69 Arabidopsis thaliana accessions reveals a conserved genome structure throughout the global species range. ''Nat Genet''. 2024 May; '''56''' (5):982-991
Discovery and genetic characterization of novel paramyxoviruses from small mammals in Hubei Province, Central China. Description: Xu, Jia-le, et al. Discovery and genetic characterization of novel paramyxoviruses from small mammals in Hubei Province, Central China. ''Microb Genom''. 2024 May; '''10''' (5):
Evolutionary divergence of subgenomes in common carp provides insights into speciation and allopolyploid success. Description: Chen, Lin, et al. Evolutionary divergence of subgenomes in common carp provides insights into speciation and allopolyploid success. ''Fundam Res''. 2024 May; '''4''' (3):589-602
Fungal-bacteria interactions provide shelter for bacteria in Caesarean section scar diverticulum. Description: Chen, Peigen, et al. Fungal-bacteria interactions provide shelter for bacteria in Caesarean section scar diverticulum. ''Elife''. 2024 May 1; '''12''':
Genomic basis of seed colour in quinoa inferred from variant patterns using extreme gradient boosting. Description: Sandell, Felix L, et al. Genomic basis of seed colour in quinoa inferred from variant patterns using extreme gradient boosting. ''Plant Biotechnol J''. 2024 May; '''22''' (5):1312-1324
Parvimonas micra can translocate from the subgingival sulcus of the human oral cavity to colorectal adenocarcinoma. Description: Conde-Perez, Kelly, et al. Parvimonas micra can translocate from the subgingival sulcus of the human oral cavity to colorectal adenocarcinoma. ''Mol Oncol''. 2024 May; '''18''' (5):1143-1173
Putative genome contamination has minimal impact on the GTDB taxonomy. Description: Mussig, Aaron J, et al. Putative genome contamination has minimal impact on the GTDB taxonomy. ''Microb Genom''. 2024 May; '''10''' (5):
Systemic metabolic depletion of gut microbiome undermines responsiveness to melanoma immunotherapy. Description: Zakharevich, Natalia V, et al. Systemic metabolic depletion of gut microbiome undermines responsiveness to melanoma immunotherapy. ''Life Sci Alliance''. 2024 May; '''7''' (5):
Winners vs. losers: Schistosoma mansoni intestinal and liver eggs exhibit striking differences in gene expression and immunogenicity. Description: Peterkova, Kristyna, et al. Winners vs. losers: Schistosoma mansoni intestinal and liver eggs exhibit striking differences in gene expression and immunogenicity. ''PLoS Pathog''. 2024 May; '''20''' (5):e1012268
Application and Comparison of Machine Learning and Database-Based Methods in Taxonomic Classification of High-Throughput Sequencing Data. Description: Tian, Qinzhong, et al. Application and Comparison of Machine Learning and Database-Based Methods in Taxonomic Classification of High-Throughput Sequencing Data. ''Genome Biol Evol''. 2024 May 2; '''16''' (5):
Decoupling between the genetic potential and the metabolic regulation and expression in microbial organic matter cleavage across microbiomes. Description: Zhao, Zihao, et al. Decoupling between the genetic potential and the metabolic regulation and expression in microbial organic matter cleavage across microbiomes. ''Microbiol Spectr''. 2024 May 2; '''12''' (5):e0303623
Genome Evolution and Introgression in the New Zealand mud Snails Potamopyrgus estuarinus and Potamopyrgus kaitunuparaoa. Description: Fields, Peter D, et al. Genome Evolution and Introgression in the New Zealand mud Snails Potamopyrgus estuarinus and Potamopyrgus kaitunuparaoa. ''Genome Biol Evol''. 2024 May 2; '''16''' (5):
Sphingomonas clade and functional distribution with simulated climate change. Description: Sorouri, Bahareh, et al. Sphingomonas clade and functional distribution with simulated climate change. ''Microbiol Spectr''. 2024 May 2; '''12''' (5):e0023624
The Evolution and Characterization of the RNA Interference Pathways in Lophotrochozoa. Description: Formaggioni, Alessandro, et al. The Evolution and Characterization of the RNA Interference Pathways in Lophotrochozoa. ''Genome Biol Evol''. 2024 May 2; '''16''' (5):
Chromosome-level genome assembly of the threatened resource plant Cinnamomum chago. Description: Tao, Lidan, et al. Chromosome-level genome assembly of the threatened resource plant Cinnamomum chago. ''Sci Data''. 2024 May 3; '''11''' (1):447
Community dynamics and metagenomic analyses reveal Bacteroidota's role in widespread enzymatic Fucus vesiculosus cell wall degradation. Description: Macdonald, Jascha F H, et al. Community dynamics and metagenomic analyses reveal Bacteroidota's role in widespread enzymatic Fucus vesiculosus cell wall degradation. ''Sci Rep''. 2024 May 3; '''14''' (1):10237
Integrated phenotypic, transcriptomics and metabolomics: growth status and metabolite accumulation pattern of medicinal materials at different harvest periods of Astragalus Membranaceus Mongholicus. Description: Li, Xiaojie, et al. Integrated phenotypic, transcriptomics and metabolomics: growth status and metabolite accumulation pattern of medicinal materials at different harvest periods of Astragalus Membranaceus Mongholicus. ''BMC Plant Biol''. 2024 May 3; '''24''' (1):358
Genomic epidemiology reveals multiple mechanisms of linezolid resistance in clinical enterococci in China. Description: Wang, Ziran, et al. Genomic epidemiology reveals multiple mechanisms of linezolid resistance in clinical enterococci in China. ''Ann Clin Microbiol Antimicrob''. 2024 May 4; '''23''' (1):41
A high-quality chromosome-scale genome assembly of blood orange, an important pigmented sweet orange variety. Description: Yang, Lei, et al. A high-quality chromosome-scale genome assembly of blood orange, an important pigmented sweet orange variety. ''Sci Data''. 2024 May 6; '''11''' (1):460
Integrating multi-platform assembly to recover MAGs from hot spring biofilms: insights into microbial diversity, biofilm formation, and carbohydrate degradation. Description: Liew, Kok Jun, et al. Integrating multi-platform assembly to recover MAGs from hot spring biofilms: insights into microbial diversity, biofilm formation, and carbohydrate degradation. ''Environ Microbiome''. 2024 May 6; '''19''' (1):29
Whole genome sequence analysis of shallot virus X from India reveals it to be a natural recombinant with positive selection pressure. Description: Singh, Jyoti, et al. Whole genome sequence analysis of shallot virus X from India reveals it to be a natural recombinant with positive selection pressure. ''BMC Genom Data''. 2024 May 6; '''25''' (1):42
Frequent nonhomologous replacement of replicative helicase loaders by viruses in Vibrionaceae. Description: Tominaga, Kento, et al. Frequent nonhomologous replacement of replicative helicase loaders by viruses in Vibrionaceae. ''Proc Natl Acad Sci U S A''. 2024 May 7; '''121''' (19):e2317954121
Genomic insights into the cellular specialization of predation in raptorial protists. Description: Li, Zaihan, et al. Genomic insights into the cellular specialization of predation in raptorial protists. ''BMC Biol''. 2024 May 7; '''22''' (1):107
Metagenomic insights into the relationship between intestinal flora and residual feed intake of meat ducks. Description: Yang, Chunyan, et al. Metagenomic insights into the relationship between intestinal flora and residual feed intake of meat ducks. ''Poult Sci''. 2024 May 7; '''103''' (7):103836
Chromosomal-level genome assembly and annotation of the tropical sea cucumber Holothuria scabra. Description: Zhong, Shengping, et al. Chromosomal-level genome assembly and annotation of the tropical sea cucumber Holothuria scabra. ''Sci Data''. 2024 May 9; '''11''' (1):474
Integrated de novo transcriptome of Culex pipiens mosquito larvae as a resource for genetic control strategies. Description: Mastrantonio, Valentina, et al. Integrated de novo transcriptome of Culex pipiens mosquito larvae as a resource for genetic control strategies. ''Sci Data''. 2024 May 9; '''11''' (1):471
A chromosome-level genome assembly of an avivorous bat species (Nyctalus aviator). Description: Geng, Yang, et al. A chromosome-level genome assembly of an avivorous bat species (Nyctalus aviator). ''Sci Data''. 2024 May 10; '''11''' (1):480
Changes in Rhizosphere Soil Microorganisms and Metabolites during the Cultivation of Fritillaria cirrhosa. Description: Liu, Zhixiang, et al. Changes in Rhizosphere Soil Microorganisms and Metabolites during the Cultivation of Fritillaria cirrhosa. ''Biology (Basel)''. 2024 May 11; '''13''' (5):
Comparative transcriptomic analysis provides insights into the genetic networks regulating oil differential production in oil crops. Description: Chen, Jinwen, et al. Comparative transcriptomic analysis provides insights into the genetic networks regulating oil differential production in oil crops. ''BMC Biol''. 2024 May 13; '''22''' (1):110
High-quality genomes of Bombax ceiba and Ceiba pentandra provide insights into the evolution of Malvaceae species and differences in their natural fiber development. Description: Shao, Lei, et al. High-quality genomes of Bombax ceiba and Ceiba pentandra provide insights into the evolution of Malvaceae species and differences in their natural fiber development. ''Plant Commun''. 2024 May 13; '''5''' (5):100832
Effects of dietary metabolizable energy level on hepatic lipid metabolism and cecal microbiota in aged laying hens. Description: Li, Anjian, et al. Effects of dietary metabolizable energy level on hepatic lipid metabolism and cecal microbiota in aged laying hens. ''Poult Sci''. 2024 May 15; '''103''' (7):103855
Microbial adaptation to spaceflight is correlated with bacteriophage-encoded functions. Description: Irby, Iris, et al. Microbial adaptation to spaceflight is correlated with bacteriophage-encoded functions. ''Nat Commun''. 2024 May 15; '''15''' (1):3474
Uncoupled: investigating the lack of correlation between the transcription of putative plastic-degrading genes in the global ocean microbiome and marine plastic pollution. Description: Gambarini, Victor, et al. Uncoupled: investigating the lack of correlation between the transcription of putative plastic-degrading genes in the global ocean microbiome and marine plastic pollution. ''Environ Microbiome''. 2024 May 15; '''19''' (1):34
Genomic Analysis of Kitasatospora setae to Explore Its Biosynthetic Potential Regarding Secondary Metabolites. Description: Xue, Yutong, et al. Genomic Analysis of Kitasatospora setae to Explore Its Biosynthetic Potential Regarding Secondary Metabolites. ''Antibiotics (Basel)''. 2024 May 16; '''13''' (5):
Impaired signaling pathways on Berardinelli-Seip congenital lipodystrophy macrophages during Leishmania infantum infection. Description: Nogueira, Viviane Brito, et al. Impaired signaling pathways on Berardinelli-Seip congenital lipodystrophy macrophages during Leishmania infantum infection. ''Sci Rep''. 2024 May 16; '''14''' (1):11236
Discovery of fungal onoceroid triterpenoids through domainless enzyme-targeted global genome mining. Description: Tang, Jia, et al. Discovery of fungal onoceroid triterpenoids through domainless enzyme-targeted global genome mining. ''Nat Commun''. 2024 May 21; '''15''' (1):4312
Exploring Alashan Ground Squirrel (Spermophilus alashanicus) Diversity: Metagenomic and Transcriptomic Datasets from the Helan Mountains. Description: Zhao, Yao, et al. Exploring Alashan Ground Squirrel (Spermophilus alashanicus) Diversity: Metagenomic and Transcriptomic Datasets from the Helan Mountains. ''Sci Data''. 2024 May 21; '''11''' (1):517
Meta-analysis of shotgun sequencing of gut microbiota in Parkinson's disease. Description: Nishiwaki, Hiroshi, et al. Meta-analysis of shotgun sequencing of gut microbiota in Parkinson's disease. ''NPJ Parkinsons Dis''. 2024 May 21; '''10''' (1):106
General synthesis of ionic-electronic coupled two-dimensional materials. Description: Xu, Xiang, et al. General synthesis of ionic-electronic coupled two-dimensional materials. ''Nat Commun''. 2024 May 22; '''15''' (1):4368
Acarbose Impairs Gut Bacteroides Growth by Targeting Intracellular GH97 Enzymes. Description: Brown, Haley A, et al. Acarbose Impairs Gut Bacteroides Growth by Targeting Intracellular GH97 Enzymes. ''bioRxiv''. 2024 May 23;
A comprehensive review and comparison of existing computational methods for protein function prediction. Description: Lin, Baohui, et al. A comprehensive review and comparison of existing computational methods for protein function prediction. ''Brief Bioinform''. 2024 May 23; '''25''' (4):
Novel Re(I) Complexes as Potential Selective Theranostic Agents in Cancer Cells and In Vivo in Caenorhabditis elegans Tumoral Strains. Description: Marco, Alicia, et al. Novel Re(I) Complexes as Potential Selective Theranostic Agents in Cancer Cells and In Vivo in Caenorhabditis elegans Tumoral Strains. ''J Med Chem''. 2024 May 23; '''67''' (10):7891-7910
Bacterial dynamics of the plastisphere microbiome exposed to sub-lethal antibiotic pollution. Description: Joannard, Brune, et al. Bacterial dynamics of the plastisphere microbiome exposed to sub-lethal antibiotic pollution. ''Microbiome''. 2024 May 24; '''12''' (1):97
Comparative analysis, diversification, and functional validation of plant nucleotide-binding site domain genes. Description: Hussain, Athar, et al. Comparative analysis, diversification, and functional validation of plant nucleotide-binding site domain genes. ''Sci Rep''. 2024 May 24; '''14''' (1):11930
Construction of high-quality genomes and gene catalogue for culturable microbes of sugarcane (Saccharum spp.). Description: Wu, Liang, et al. Construction of high-quality genomes and gene catalogue for culturable microbes of sugarcane (Saccharum spp.). ''Sci Data''. 2024 May 24; '''11''' (1):534
Phylogenomics reveals the evolutionary origins of lichenization in chlorophyte algae. Description: Puginier, Camille, et al. Phylogenomics reveals the evolutionary origins of lichenization in chlorophyte algae. ''Nat Commun''. 2024 May 24; '''15''' (1):4452
Bacteroidales reduces growth rate through serum metabolites and cytokines in Chinese Ningdu yellow chickens. Description: Xiong, Xinwei, et al. Bacteroidales reduces growth rate through serum metabolites and cytokines in Chinese Ningdu yellow chickens. ''Poult Sci''. 2024 May 25; '''103''' (8):103905
Characterization of Two Novel Single-Stranded RNA Viruses from Agroathelia rolfsii, the Causal Agent of Peanut Stem Rot. Description: Yu, Dongyang, et al. Characterization of Two Novel Single-Stranded RNA Viruses from Agroathelia rolfsii, the Causal Agent of Peanut Stem Rot. ''Viruses''. 2024 May 27; '''16''' (6):
Comparative genomic analysis of Planctomycetota potential for polysaccharide degradation identifies biotechnologically relevant microbes. Description: Klimek, Dominika, et al. Comparative genomic analysis of Planctomycetota potential for polysaccharide degradation identifies biotechnologically relevant microbes. ''BMC Genomics''. 2024 May 27; '''25''' (1):523
Discovery of novel RNA viruses through analysis of fungi-associated next-generation sequencing data. Description: Lu, Xiang, et al. Discovery of novel RNA viruses through analysis of fungi-associated next-generation sequencing data. ''BMC Genomics''. 2024 May 27; '''25''' (1):517
Temperature Dependence of the Ring Opening of Cyclopropene Imines on Thorium Metallocenes. Description: Deka, Hemanta, et al. Temperature Dependence of the Ring Opening of Cyclopropene Imines on Thorium Metallocenes. ''Inorg Chem''. 2024 May 27; '''63''' (21):9572-9578
Design of a new palladium(ii) halide complex as a bio-active material: synthesis, physico-chemical studies, DFT-computations and evaluation of anti-inflammatory, antioxidant and anti-gastric damage activities. Description: Design of a new palladium(ii) halide complex as a bio-active material: synthesis, physico-chemical studies, DFT-computations and evaluation of anti-inflammatory, antioxidant and anti-gastric damage activities. ''''. 2024 May 28; '''14''' (25):17413-17433
Structure classification of the proteins from Salmonella enterica pangenome revealed novel potential pathogenicity islands. Description: Medvedev, Kirill E, et al. Structure classification of the proteins from Salmonella enterica pangenome revealed novel potential pathogenicity islands. ''Sci Rep''. 2024 May 28; '''14''' (1):12260
A metagenomic analysis of the phase 2 Anopheles gambiae 1000 genomes dataset reveals a wide diversity of cobionts associated with field collected mosquitoes. Description: Pastusiak, Andrzej, et al. A metagenomic analysis of the phase 2 Anopheles gambiae 1000 genomes dataset reveals a wide diversity of cobionts associated with field collected mosquitoes. ''Commun Biol''. 2024 May 30; '''7''' (1):667
Combining metabolomics and transcriptomics to reveal the potential medicinal value of rare species Glycyrrhiza squamulose. Description: Ma, Bin, et al. Combining metabolomics and transcriptomics to reveal the potential medicinal value of rare species Glycyrrhiza squamulose. ''Heliyon''. 2024 May 30; '''10''' (10):e30868
Influence of helicobacter pylori on composition and function of gastric microbiota in patients with chronic non-atrophic gastritis. Description: Zhao, Fan, et al. Influence of helicobacter pylori on composition and function of gastric microbiota in patients with chronic non-atrophic gastritis. ''Heliyon''. 2024 May 30; '''10''' (10):e31472
Evolutionary origin and gradual accumulation with plant evolution of the LACS family. Description: Zhou, Siyuan, et al. Evolutionary origin and gradual accumulation with plant evolution of the LACS family. ''BMC Plant Biol''. 2024 May 31; '''24''' (1):481
Genomic and Metagenomic Insights into the Distribution of Nicotine-degrading Enzymes in Human Microbiota. Description: Guan, Ying, et al. Genomic and Metagenomic Insights into the Distribution of Nicotine-degrading Enzymes in Human Microbiota. ''Curr Genomics''. 2024 May 31; '''25''' (3):226-235
A multi-tissue de novo transcriptome assembly and relative gene expression of the vulnerable freshwater salmonid Thymallus ligericus. Description: Secci-Petretto, Giulia, et al. A multi-tissue de novo transcriptome assembly and relative gene expression of the vulnerable freshwater salmonid Thymallus ligericus. ''Genetica''. 2024 Jun; '''152''' (2-3):71-81
Bacterioplankton taxa compete for iron along the early spring-summer transition in the Arctic Ocean. Description: Puente-Sanchez, Fernando, et al. Bacterioplankton taxa compete for iron along the early spring-summer transition in the Arctic Ocean. ''Ecol Evol''. 2024 Jun; '''14''' (6):e11546
Characterization of transcriptome changes in saline stress adaptation on Leuciscus merzbacheri using PacBio Iso-Seq and RNA-Seq. Description: Yu, Dan, et al. Characterization of transcriptome changes in saline stress adaptation on Leuciscus merzbacheri using PacBio Iso-Seq and RNA-Seq. ''DNA Res''. 2024 Jun 1; '''31''' (3):
Circulation of Non-Middle East Respiratory Syndrome (MERS) Coronaviruses in Imported Camels in Saudi Arabia. Description: Alraddadi, Yasser, et al. Circulation of Non-Middle East Respiratory Syndrome (MERS) Coronaviruses in Imported Camels in Saudi Arabia. ''Cureus''. 2024 Jun; '''16''' (6):e63351
Draft genome sequence and tissue expression panel of Pacific saury (Cololabis saira). Description: Nakamura, Yoji, et al. Draft genome sequence and tissue expression panel of Pacific saury (Cololabis saira). ''DNA Res''. 2024 Jun 1; '''31''' (3):
Effects of Probiotics on Preterm Infant Gut Microbiota Across Populations: A Systematic Review and Meta-Analysis. Description: He, Pandi, et al. Effects of Probiotics on Preterm Infant Gut Microbiota Across Populations: A Systematic Review and Meta-Analysis. ''Adv Nutr''. 2024 Jun; '''15''' (6):100233
First transcriptome sequencing, assembly, and annotation dataset for the freshwater angelfish, pterophyllum scalare. Description: Madireddy, Indeever. First transcriptome sequencing, assembly, and annotation dataset for the freshwater angelfish, pterophyllum scalare. ''Data Brief''. 2024 Jun; '''54''': 110400
Genome features and carbohydrate-active enzymes repertoire of a novel Stenotrophomonas sepilia Alg010 strain isolated from Sargassum seaweed waste. Description: Mohapatra, Bidyut R. Genome features and carbohydrate-active enzymes repertoire of a novel Stenotrophomonas sepilia Alg010 strain isolated from Sargassum seaweed waste. ''Data Brief''. 2024 Jun; '''54''': 110533
Gut Microbiota-Tryptophan Metabolism-GLP-1 Axis Participates in beta-Cell Regeneration Induced by Dapagliflozin. Description: Jiang, Yafei, et al. Gut Microbiota-Tryptophan Metabolism-GLP-1 Axis Participates in beta-Cell Regeneration Induced by Dapagliflozin. ''Diabetes''. 2024 Jun 1; '''73''' (6):926-940
Metagenomic analysis of the effects of salinity on microbial community and functional gene diversity in glacial meltwater estuary, Ny-Alesund, Arctic. Description: Yang, Fan, et al. Metagenomic analysis of the effects of salinity on microbial community and functional gene diversity in glacial meltwater estuary, Ny-Alesund, Arctic. ''Braz J Microbiol''. 2024 Jun; '''55''' (2):1587-1599
Plants attacked above-ground by leaf-mining flies change below-ground microbiota to enhance plant defense. Description: Gao, Yang, et al. Plants attacked above-ground by leaf-mining flies change below-ground microbiota to enhance plant defense. ''Hortic Res''. 2024 Jun; '''11''' (6):uhae121
Protein remote homology detection and structural alignment using deep learning. Description: Hamamsy, Tymor, et al. Protein remote homology detection and structural alignment using deep learning. ''Nat Biotechnol''. 2024 Jun; '''42''' (6):975-985
IMA Genome - F19 : A genome assembly and annotation guide to empower mycologists, including annotated draft genome sequences of Ceratocystis pirilliformis, Diaporthe australafricana, Fusarium ophioides, Paecilomyces lecythidis, and Sporothrix steno... Description: Aylward, Janneke, et al. IMA Genome - F19 : A genome assembly and annotation guide to empower mycologists, including annotated draft genome sequences of Ceratocystis pirilliformis, Diaporthe australafricana, Fusarium ophioides, Paecilomyces lecythidis, and Sporothrix stenoceras. ''IMA Fungus''. 2024 Jun 3; '''15''' (1):12
Phosphorothioate DNA modification by BREX Type 4 systems in the human gut microbiome. Description: Yuan, Yifeng, et al. Phosphorothioate DNA modification by BREX Type 4 systems in the human gut microbiome. ''bioRxiv''. 2024 Jun 3;
Chromosome-level genome assembly of the snakefly Mongoloraphidia duomilia (Raphidioptera: Raphidiidae). Description: Shen, Rongrong, et al. Chromosome-level genome assembly of the snakefly Mongoloraphidia duomilia (Raphidioptera: Raphidiidae). ''Sci Data''. 2024 Jun 4; '''11''' (1):579
Intake of compound probiotics accelerates the construction of immune function and gut microbiome in Holstein calves. Description: Cai, Xinghua, et al. Intake of compound probiotics accelerates the construction of immune function and gut microbiome in Holstein calves. ''Microbiol Spectr''. 2024 Jun 4; '''12''' (6):e0190923
Telomere-to-telomere Genome Assembly of the Clubroot Pathogen Plasmodiophora Brassicae. Description: Javed, Muhammad Asim, et al. Telomere-to-telomere Genome Assembly of the Clubroot Pathogen Plasmodiophora Brassicae. ''Genome Biol Evol''. 2024 Jun 4; '''16''' (6):
Haplotype-resolved chromosome-level genome assembly of Ehretia macrophylla. Description: Cheng, Shiping, et al. Haplotype-resolved chromosome-level genome assembly of Ehretia macrophylla. ''Sci Data''. 2024 Jun 5; '''11''' (1):589
A haplotype-resolved genome assembly of Malus domestica 'Red Fuji'. Description: Peng, Haixu, et al. A haplotype-resolved genome assembly of Malus domestica 'Red Fuji'. ''Sci Data''. 2024 Jun 6; '''11''' (1):592
Compendium of 5810 genomes of sheep and goat gut microbiomes provides new insights into the glycan and mucin utilization. Description: Zhang, Ke, et al. Compendium of 5810 genomes of sheep and goat gut microbiomes provides new insights into the glycan and mucin utilization. ''Microbiome''. 2024 Jun 6; '''12''' (1):104
Innovative use of liquid crystalline acids as color developers in leuco dye-based temperature sensors. Description: Pawlow, J, et al. Innovative use of liquid crystalline acids as color developers in leuco dye-based temperature sensors. ''RSC Adv''. 2024 Jun 6; '''14''' (26):18663-18670
Characterization of Taxonomic and Functional Dynamics Associated with Harmful Algal Bloom Formation in Recreational Water Ecosystems. Description: Saleem, Faizan, et al. Characterization of Taxonomic and Functional Dynamics Associated with Harmful Algal Bloom Formation in Recreational Water Ecosystems. ''Toxins (Basel)''. 2024 Jun 7; '''16''' (6):
Comparative transcriptomics elucidates the cellular responses of an aeroterrestrial zygnematophyte to UV radiation. Description: Busch, Anna, et al. Comparative transcriptomics elucidates the cellular responses of an aeroterrestrial zygnematophyte to UV radiation. ''J Exp Bot''. 2024 Jun 7; '''75''' (11):3624-3642
The nuclear and mitochondrial genome assemblies of Tetragonisca angustula (Apidae: Meliponini), a tiny yet remarkable pollinator in the Neotropics. Description: Ferrari, Rafael Rodrigues, et al. The nuclear and mitochondrial genome assemblies of Tetragonisca angustula (Apidae: Meliponini), a tiny yet remarkable pollinator in the Neotropics. ''BMC Genomics''. 2024 Jun 11; '''25''' (1):587
Birthmode and environment-dependent microbiota transmission dynamics are complemented by breastfeeding during the first year. Description: Selma-Royo, Marta, et al. Birthmode and environment-dependent microbiota transmission dynamics are complemented by breastfeeding during the first year. ''Cell Host Microbe''. 2024 Jun 12; '''32''' (6):996-1010.e4
Chromosome-level genome sequencing and multi-omics of the Hungarian White Goose (Anser anser domesticus) reveals novel miRNA-mRNA regulation mechanism of waterfowl feather follicle development. Description: Zhou, Yuxuan, et al. Chromosome-level genome sequencing and multi-omics of the Hungarian White Goose (Anser anser domesticus) reveals novel miRNA-mRNA regulation mechanism of waterfowl feather follicle development. ''Poult Sci''. 2024 Jun 12; '''103''' (9):103933
Pollution pressure drives microbial assemblages that improve the phytoremediation potential of heavy metals by Ricinus communis. Description: Rubio-Noguez, Daniela, et al. Pollution pressure drives microbial assemblages that improve the phytoremediation potential of heavy metals by Ricinus communis. ''World J Microbiol Biotechnol''. 2024 Jun 13; '''40''' (8):241
Sex-biased gene expression precedes sexual dimorphism in the agonadal annelid Platynereis dumerilii. Description: Ribeiro, Rannyele P, et al. Sex-biased gene expression precedes sexual dimorphism in the agonadal annelid Platynereis dumerilii. ''bioRxiv''. 2024 Jun 13;
The radiation of New Zealand's skinks and geckos is associated with distinct viromes. Description: Waller, Stephanie J, et al. The radiation of New Zealand's skinks and geckos is associated with distinct viromes. ''BMC Ecol Evol''. 2024 Jun 13; '''24''' (1):81
Distinct signatures of gut microbiota and metabolites in primary biliary cholangitis with poor biochemical response after ursodeoxycholic acid treatment. Description: Han, Weijia, et al. Distinct signatures of gut microbiota and metabolites in primary biliary cholangitis with poor biochemical response after ursodeoxycholic acid treatment. ''Cell Biosci''. 2024 Jun 15; '''14''' (1):80
Metagenomic and culture-dependent analysis of Rhinopithecius bieti gut microbiota and characterization of a novel genus of Sphingobacteriaceae. Description: Wang, Qiong, et al. Metagenomic and culture-dependent analysis of Rhinopithecius bieti gut microbiota and characterization of a novel genus of Sphingobacteriaceae. ''Sci Rep''. 2024 Jun 15; '''14''' (1):13819
Organic fertilization co-selects genetically linked antibiotic and metal(loid) resistance genes in global soil microbiome. Description: Liu, Zi-Teng, et al. Organic fertilization co-selects genetically linked antibiotic and metal(loid) resistance genes in global soil microbiome. ''Nat Commun''. 2024 Jun 17; '''15''' (1):5168
Fusion/fission protein family identification in Archaea. Description: Padalko, Anastasiia, et al. Fusion/fission protein family identification in Archaea. ''mSystems''. 2024 Jun 18; '''9''' (6):e0094823
Haplotype-resolved assembly of a pig genome using single-sperm sequencing. Description: Niu, Yongchao, et al. Haplotype-resolved assembly of a pig genome using single-sperm sequencing. ''Commun Biol''. 2024 Jun 18; '''7''' (1):738
Lactobacillus-derived protoporphyrin IX and SCFAs regulate the fiber size via glucose metabolism in the skeletal muscle of chickens. Description: Cai, Liyuan, et al. Lactobacillus-derived protoporphyrin IX and SCFAs regulate the fiber size via glucose metabolism in the skeletal muscle of chickens. ''mSystems''. 2024 Jun 18; '''9''' (6):e0021424
Multi-omics strategy reveals potential role of antimicrobial resistance and virulence factor genes responsible for Simmental diarrheic calves caused by Escherichia coli. Description: Shi, Zhihai, et al. Multi-omics strategy reveals potential role of antimicrobial resistance and virulence factor genes responsible for Simmental diarrheic calves caused by Escherichia coli. ''mSystems''. 2024 Jun 18; '''9''' (6):e0134823
Trichomonas vaginalis extracellular vesicles up-regulate and directly transfer adherence factors promoting host cell colonization. Description: Kochanowsky, Joshua A, et al. Trichomonas vaginalis extracellular vesicles up-regulate and directly transfer adherence factors promoting host cell colonization. ''Proc Natl Acad Sci U S A''. 2024 Jun 18; '''121''' (25):e2401159121
Characterization and Genome Analysis of the Delftia lacustris Strain LzhVag01 Isolated from Vaginal Discharge. Description: Zhang, Li, et al. Characterization and Genome Analysis of the Delftia lacustris Strain LzhVag01 Isolated from Vaginal Discharge. ''Curr Microbiol''. 2024 Jun 19; '''81''' (8):232
Description of new micro-colonial fungi species Neophaeococcomyces mojavensis, Coniosporium tulheliwenetii, and Taxawa tesnikishii cultured from biological soil crusts. Description: Kurbessoian, Tania, et al. Description of new micro-colonial fungi species Neophaeococcomyces mojavensis, Coniosporium tulheliwenetii, and Taxawa tesnikishii cultured from biological soil crusts. ''bioRxiv''. 2024 Jun 20;
Minimal and hybrid hydrogenases are active from archaea. Description: Greening, Chris, et al. Minimal and hybrid hydrogenases are active from archaea. ''Cell''. 2024 Jun 20; '''187''' (13):3357-3372.e19
Physiological and transcriptomic analyses reveal the regulatory mechanisms of Anoectochilus roxburghii in response to high-temperature stress. Description: Zhang, Linghui, et al. Physiological and transcriptomic analyses reveal the regulatory mechanisms of Anoectochilus roxburghii in response to high-temperature stress. ''BMC Plant Biol''. 2024 Jun 20; '''24''' (1):584
Chromosome-scale genome assemblies of sexually dimorphic male and female Acrossocheilus fasciatus. Description: Yuan, Yixin, et al. Chromosome-scale genome assemblies of sexually dimorphic male and female Acrossocheilus fasciatus. ''Sci Data''. 2024 Jun 21; '''11''' (1):653
Chromosome-level genome of the long-tailed marine-living ornate spiny lobster, Panulirus ornatus. Description: Ren, Xianyun, et al. Chromosome-level genome of the long-tailed marine-living ornate spiny lobster, Panulirus ornatus. ''Sci Data''. 2024 Jun 22; '''11''' (1):662
Strain dynamics of contaminating bacteria modulate the yield of ethanol biorefineries. Description: de Oliveira Lino, Felipe Senne, et al. Strain dynamics of contaminating bacteria modulate the yield of ethanol biorefineries. ''Nat Commun''. 2024 Jun 22; '''15''' (1):5323
Comparative analysis of lipid and flavonoid biosynthesis between Pongamia and soybean seeds: genomic, transcriptional, and metabolic perspectives. Description: Liu, Chun, et al. Comparative analysis of lipid and flavonoid biosynthesis between Pongamia and soybean seeds: genomic, transcriptional, and metabolic perspectives. ''Biotechnol Biofuels Bioprod''. 2024 Jun 24; '''17''' (1):86
Entourage: all-in-one sequence analysis software for genome assembly, virus detection, virus discovery, and intrasample variation profiling. Description: Phumiphanjarphak, Worakorn, et al. Entourage: all-in-one sequence analysis software for genome assembly, virus detection, virus discovery, and intrasample variation profiling. ''BMC Bioinformatics''. 2024 Jun 24; '''25''' (1):222
Peracetic acid treatment of squid eggs infected with parasitic copepod (Ikanecator primus gen. et sp. nov.). Description: Zoral, Mehmet Arif, et al. Peracetic acid treatment of squid eggs infected with parasitic copepod (Ikanecator primus gen. et sp. nov.). ''Sci Rep''. 2024 Jun 24; '''14''' (1):14513
Bioinformatic prediction of proteins relevant to functions of the bacterial OLE ribonucleoprotein complex. Description: Fernando, Chrishan M, et al. Bioinformatic prediction of proteins relevant to functions of the bacterial OLE ribonucleoprotein complex. ''mSphere''. 2024 Jun 25; '''9''' (6):e0015924
circIARS: a potential plasma biomarker for diagnosing non-small cell lung cancer. Description: Zhang, Qi, et al. circIARS: a potential plasma biomarker for diagnosing non-small cell lung cancer. ''Acta Biochim Biophys Sin (Shanghai)''. 2024 Jun 25; '''56''' (6):927-936
Comparative genomic analysis of strain Priestia megaterium B1 reveals conserved potential for adaptation to endophytism and plant growth promotion. Description: Mahmoud, Fatma M, et al. Comparative genomic analysis of strain Priestia megaterium B1 reveals conserved potential for adaptation to endophytism and plant growth promotion. ''Microbiol Spectr''. 2024 Jun 25; '''12''' (8):e0042224
GeneMark-ETP significantly improves the accuracy of automatic annotation of large eukaryotic genomes. Description: Bruna, Tomas, et al. GeneMark-ETP significantly improves the accuracy of automatic annotation of large eukaryotic genomes. ''Genome Res''. 2024 Jun 25; '''34''' (5):757-768
Metagenomic insights into microbial adaptation to the salinity gradient of a typical short residence-time estuary. Description: Wu, Ziheng, et al. Metagenomic insights into microbial adaptation to the salinity gradient of a typical short residence-time estuary. ''Microbiome''. 2024 Jun 25; '''12''' (1):115
Database Bias in the Detection of Interdomain Horizontal Gene Transfer Events in Pezizomycotina. Description: Aguirre-Carvajal, Kevin, et al. Database Bias in the Detection of Interdomain Horizontal Gene Transfer Events in Pezizomycotina. ''Biology (Basel)''. 2024 Jun 26; '''13''' (7):
Effects of aeolian deposition on soil properties and microbial carbon metabolism function in farmland of Songnen Plain, China. Description: Mo, Jixian, et al. Effects of aeolian deposition on soil properties and microbial carbon metabolism function in farmland of Songnen Plain, China. ''Sci Rep''. 2024 Jun 26; '''14''' (1):14791
Proteomic profiling of prostate cancer reveals molecular signatures under antiandrogen treatment. Description: Huang, Yurun, et al. Proteomic profiling of prostate cancer reveals molecular signatures under antiandrogen treatment. ''Clin Proteomics''. 2024 Jun 26; '''21''' (1):44
Quantitative and dynamic profiling of human gut core microbiota by real-time PCR. Description: Yan, Ziheng, et al. Quantitative and dynamic profiling of human gut core microbiota by real-time PCR. ''Appl Microbiol Biotechnol''. 2024 Jun 26; '''108''' (1):396
Trichomes and unique gene expression confer insect herbivory resistance in Vitis labrusca grapevines. Description: Dixon, Cullen W, et al. Trichomes and unique gene expression confer insect herbivory resistance in Vitis labrusca grapevines. ''BMC Plant Biol''. 2024 Jun 27; '''24''' (1):609
Predicting protein functions using positive-unlabeled ranking with ontology-based priors. Description: Zhapa-Camacho, Fernando, et al. Predicting protein functions using positive-unlabeled ranking with ontology-based priors. ''Bioinformatics''. 2024 Jun 28; '''40''' (Supplement_1):i401-i409
Cadmium exposure induces changes in gut microbial composition and metabolic function in long-tailed dwarf hamsters, Cricetulus longicaudatus. Description: Tao, Mengfan, et al. Cadmium exposure induces changes in gut microbial composition and metabolic function in long-tailed dwarf hamsters, Cricetulus longicaudatus. ''Ecol Evol''. 2024 Jul; '''14''' (7):e11682
Evolutionary assembly of the plant terrestrialization toolkit from protein domains. Description: Dhabalia Ashok, Amra, et al. Evolutionary assembly of the plant terrestrialization toolkit from protein domains. ''Proc Biol Sci''. 2024 Jul; '''291''' (2027):20240985
Exploratory multi-omics analysis reveals host-microbe interactions associated with disease severity in psoriatic skin. Description: Yang, Ying, et al. Exploratory multi-omics analysis reveals host-microbe interactions associated with disease severity in psoriatic skin. ''EBioMedicine''. 2024 Jul; '''105''': 105222
Exploring the diversity of galls on Artemisia indica induced by Rhopalomyia species through morphological and transcriptome analyses. Description: Takeda, Seiji, et al. Exploring the diversity of galls on Artemisia indica induced by Rhopalomyia species through morphological and transcriptome analyses. ''Plant Direct''. 2024 Jul; '''8''' (7):e619
Glyoxal oxidase-mediated detoxification of reactive carbonyl species contributes to virulence, stress tolerance, and development in a pathogenic fungus. Description: Liu, Xiaoyu, et al. Glyoxal oxidase-mediated detoxification of reactive carbonyl species contributes to virulence, stress tolerance, and development in a pathogenic fungus. ''PLoS Pathog''. 2024 Jul; '''20''' (7):e1012431
Haplotype-resolved genome assembly for tetraploid Chinese cherry (Prunus pseudocerasus) offers insights into fruit firmness. Description: Jiu, Songtao, et al. Haplotype-resolved genome assembly for tetraploid Chinese cherry (Prunus pseudocerasus) offers insights into fruit firmness. ''Hortic Res''. 2024 Jul; '''11''' (7):uhae142
Induction of apoptosis by double-stranded RNA was present in the last common ancestor of cnidarian and bilaterian animals. Description: Kozlovski, Itamar, et al. Induction of apoptosis by double-stranded RNA was present in the last common ancestor of cnidarian and bilaterian animals. ''PLoS Pathog''. 2024 Jul; '''20''' (7):e1012320
Integrated multi-omics investigation revealed the importance of phenylpropanoid metabolism in the defense response of Lilium regale Wilson to fusarium wilt. Description: Deng, Jie, et al. Integrated multi-omics investigation revealed the importance of phenylpropanoid metabolism in the defense response of Lilium regale Wilson to fusarium wilt. ''Hortic Res''. 2024 Jul; '''11''' (7):uhae140
Longitudinal multi-omics analysis of host microbiome architecture and immune responses during short-term spaceflight. Description: Tierney, Braden T, et al. Longitudinal multi-omics analysis of host microbiome architecture and immune responses during short-term spaceflight. ''Nat Microbiol''. 2024 Jul; '''9''' (7):1661-1675
The radical impact of oxygen on prokaryotic evolution-enzyme inhibition first, uninhibited essential biosyntheses second, aerobic respiration third. Description: Mrnjavac, Natalia, et al. The radical impact of oxygen on prokaryotic evolution-enzyme inhibition first, uninhibited essential biosyntheses second, aerobic respiration third. ''FEBS Lett''. 2024 Jul; '''598''' (14):1692-1714
Chromosome-level genome assembly of Helwingia omeiensis: the first genome in the family Helwingiaceae. Description: Chen, Yanyu, et al. Chromosome-level genome assembly of Helwingia omeiensis: the first genome in the family Helwingiaceae. ''Sci Data''. 2024 Jul 2; '''11''' (1):719
Gut virome alterations in patients with chronic obstructive pulmonary disease. Description: Liu, Yue, et al. Gut virome alterations in patients with chronic obstructive pulmonary disease. ''Microbiol Spectr''. 2024 Jul 2; '''12''' (7):e0428723
The N-terminal domains of NLR immune receptors exhibit structural and functional similarities across divergent plant lineages. Description: Chia, Khong-Sam, et al. The N-terminal domains of NLR immune receptors exhibit structural and functional similarities across divergent plant lineages. ''Plant Cell''. 2024 Jul 2; '''36''' (7):2491-2511
Long-Read-Based Hybrid Genome Assembly and Annotation of Snow Algal Strain CCCryo 101-99 (cf. Sphaerocystis sp., Chlamydomonadales). Description: Ciftci, Ozan, et al. Long-Read-Based Hybrid Genome Assembly and Annotation of Snow Algal Strain CCCryo 101-99 (cf. Sphaerocystis sp., Chlamydomonadales). ''Genome Biol Evol''. 2024 Jul 3; '''16''' (7):
Molecular Dating of the Teleost Whole Genome Duplication (3R) Is Compatible With the Expectations of Delayed Rediploidization. Description: Qi, Minbo, et al. Molecular Dating of the Teleost Whole Genome Duplication (3R) Is Compatible With the Expectations of Delayed Rediploidization. ''Genome Biol Evol''. 2024 Jul 3; '''16''' (7):
Annotation and visualization of parasite, fungi and arthropod genomes with Companion. Description: Haese-Hill, William, et al. Annotation and visualization of parasite, fungi and arthropod genomes with Companion. ''Nucleic Acids Res''. 2024 Jul 5; '''52''' (W1):W39-W44
Cultivation of novel Atribacterota from oil well provides new insight into their diversity, ecology, and evolution in anoxic, carbon-rich environments. Description: Jiao, Jian-Yu, et al. Cultivation of novel Atribacterota from oil well provides new insight into their diversity, ecology, and evolution in anoxic, carbon-rich environments. ''Microbiome''. 2024 Jul 6; '''12''' (1):123
Integrative genomic reconstruction of carbohydrate utilization networks in bifidobacteria: global trends, local variability, and dietary adaptation. Description: Arzamasov, Aleksandr A, et al. Integrative genomic reconstruction of carbohydrate utilization networks in bifidobacteria: global trends, local variability, and dietary adaptation. ''bioRxiv''. 2024 Jul 7;
A reference-grade genome of the xerophyte Ammopiptanthus mongolicus sheds light on its evolution history in legumes and drought-tolerance mechanisms. Description: Feng, Lei, et al. A reference-grade genome of the xerophyte Ammopiptanthus mongolicus sheds light on its evolution history in legumes and drought-tolerance mechanisms. ''Plant Commun''. 2024 Jul 8; '''5''' (7):100891
Crossroads of assembling a moss genome: navigating contaminants and horizontal gene transfer in the moss Physcomitrellopsis africana. Description: Vuruputoor, Vidya S, et al. Crossroads of assembling a moss genome: navigating contaminants and horizontal gene transfer in the moss Physcomitrellopsis africana. ''G3 (Bethesda)''. 2024 Jul 8; '''14''' (7):
Fluorinated chlorin chromophores for red-light-driven CO(2) reduction. Description: Yang, Shuang, et al. Fluorinated chlorin chromophores for red-light-driven CO(2) reduction. ''Nat Commun''. 2024 Jul 8; '''15''' (1):5704
Genome-wide patterns of noncoding and protein-coding sequence variation in the major fungal pathogen Aspergillus fumigatus. Description: Brown, Alec, et al. Genome-wide patterns of noncoding and protein-coding sequence variation in the major fungal pathogen Aspergillus fumigatus. ''G3 (Bethesda)''. 2024 Jul 8; '''14''' (7):
The genome of the Arctic snow alga Limnomonas spitsbergensis (Chlamydomonadales). Description: Hulatt, Chris J, et al. The genome of the Arctic snow alga Limnomonas spitsbergensis (Chlamydomonadales). ''G3 (Bethesda)''. 2024 Jul 8; '''14''' (7):
Iron Chelation in Soil: Scalable Biotechnology for Accelerating Carbon Dioxide Removal by Enhanced Rock Weathering. Description: Epihov, Dimitar Z, et al. Iron Chelation in Soil: Scalable Biotechnology for Accelerating Carbon Dioxide Removal by Enhanced Rock Weathering. ''Environ Sci Technol''. 2024 Jul 9; '''58''' (27):11970-11987
Chromosome-level Genome Assembly of Theretra japonica (Lepidoptera: Sphingidae). Description: Yan, Ming, et al. Chromosome-level Genome Assembly of Theretra japonica (Lepidoptera: Sphingidae). ''Sci Data''. 2024 Jul 12; '''11''' (1):770
DNA methylation enables recurrent endogenization of giant viruses in an animal relative. Description: Sarre, Luke A, et al. DNA methylation enables recurrent endogenization of giant viruses in an animal relative. ''Sci Adv''. 2024 Jul 12; '''10''' (28):eado6406
Effects of turbulence on diatoms of the genus Pseudo-nitzschia spp. and associated bacteria. Description: Maire, Yanis, et al. Effects of turbulence on diatoms of the genus Pseudo-nitzschia spp. and associated bacteria. ''FEMS Microbiol Ecol''. 2024 Jul 12; '''100''' (8):
A high-quality chromosome-level genome assembly of the endangered tree Kmeria septentrionalis. Description: Shi, Chen-Yu, et al. A high-quality chromosome-level genome assembly of the endangered tree Kmeria septentrionalis. ''Sci Data''. 2024 Jul 13; '''11''' (1):775
Metagenomic insights into microbial community structure and metabolism in alpine permafrost on the Tibetan Plateau. Description: Kang, Luyao, et al. Metagenomic insights into microbial community structure and metabolism in alpine permafrost on the Tibetan Plateau. ''Nat Commun''. 2024 Jul 14; '''15''' (1):5920
Genomic and single-cell analyses reveal genetic signatures of swimming pattern and diapause strategy in jellyfish. Description: Dong, Zhijun, et al. Genomic and single-cell analyses reveal genetic signatures of swimming pattern and diapause strategy in jellyfish. ''Nat Commun''. 2024 Jul 15; '''15''' (1):5936
Metabolic imaging across scales reveals distinct prostate cancer phenotypes. Description: Sushentsev, Nikita, et al. Metabolic imaging across scales reveals distinct prostate cancer phenotypes. ''Nat Commun''. 2024 Jul 16; '''15''' (1):5980
Unveiling the Arsenal of Apple Bitter Rot Fungi: Comparative Genomics Identifies Candidate Effectors, CAZymes, and Biosynthetic Gene Clusters in Colletotrichum Species. Description: Khodadadi, Fatemeh, et al. Unveiling the Arsenal of Apple Bitter Rot Fungi: Comparative Genomics Identifies Candidate Effectors, CAZymes, and Biosynthetic Gene Clusters in Colletotrichum Species. ''J Fungi (Basel)''. 2024 Jul 16; '''10''' (7):
The chromosome-level genome assembly of Aphidoletes aphidimyza Rondani (Diptera: Cecidomyiidae). Description: Shen, Xiuxian, et al. The chromosome-level genome assembly of Aphidoletes aphidimyza Rondani (Diptera: Cecidomyiidae). ''Sci Data''. 2024 Jul 17; '''11''' (1):785
Efficacy of stem cells versus microvesicles in ameliorating chronic renal injury in rats (histological and biochemical study). Description: Mohammed, Maha Z, et al. Efficacy of stem cells versus microvesicles in ameliorating chronic renal injury in rats (histological and biochemical study). ''Sci Rep''. 2024 Jul 18; '''14''' (1):16589
Gut microbiome in endometriosis: a cohort study on 1000 individuals. Description: Perez-Prieto, Inmaculada, et al. Gut microbiome in endometriosis: a cohort study on 1000 individuals. ''BMC Med''. 2024 Jul 18; '''22''' (1):294
A seasonal study on the microbiomes of Diploid vs. Triploid eastern oysters and their denitrification potential. Description: Pathak, Ashish, et al. A seasonal study on the microbiomes of Diploid vs. Triploid eastern oysters and their denitrification potential. ''iScience''. 2024 Jul 19; '''27''' (7):110193
Chromosome-level genome assembly of Plagiognathops microlepis based on PacBio HiFi and Hi-C sequencing. Description: Wu, Yidi, et al. Chromosome-level genome assembly of Plagiognathops microlepis based on PacBio HiFi and Hi-C sequencing. ''Sci Data''. 2024 Jul 19; '''11''' (1):802
Comparative genomic and transcriptomic analyses provide new insight into symbiotic host specificity. Description: Yuan, Songli, et al. Comparative genomic and transcriptomic analyses provide new insight into symbiotic host specificity. ''iScience''. 2024 Jul 19; '''27''' (7):110207
Diverse bacterial consortia: key drivers of rhizosoil fertility modulating microbiome functions, plant physiology, nutrition, and soybean grain yield. Description: Moretti, Luiz Gustavo, et al. Diverse bacterial consortia: key drivers of rhizosoil fertility modulating microbiome functions, plant physiology, nutrition, and soybean grain yield. ''Environ Microbiome''. 2024 Jul 19; '''19''' (1):50
Effect of time-restricted eating regimen on weight loss is mediated by gut microbiome. Description: Huang, Chensihan, et al. Effect of time-restricted eating regimen on weight loss is mediated by gut microbiome. ''iScience''. 2024 Jul 19; '''27''' (7):110202
Effects of dietary zinc on the gut microbiome and resistome of the gestating cow and neonatal calf. Description: Drake, Mary Jane, et al. Effects of dietary zinc on the gut microbiome and resistome of the gestating cow and neonatal calf. ''Anim Microbiome''. 2024 Jul 19; '''6''' (1):39
Fusobacterium species are distinctly associated with patients with Lynch syndrome colorectal cancer. Description: Salim, Felix, et al. Fusobacterium species are distinctly associated with patients with Lynch syndrome colorectal cancer. ''iScience''. 2024 Jul 19; '''27''' (7):110181
Green manure application improves insect resistance of subsequent crops through the optimization of soil nutrients and rhizosphere microbiota. Description: Ma, Lin, et al. Green manure application improves insect resistance of subsequent crops through the optimization of soil nutrients and rhizosphere microbiota. ''iScience''. 2024 Jul 19; '''27''' (7):110320
Maternal high fat diet induces circadian clock-independent endocrine alterations impacting the metabolism of the offspring. Description: Ding, Lu, et al. Maternal high fat diet induces circadian clock-independent endocrine alterations impacting the metabolism of the offspring. ''iScience''. 2024 Jul 19; '''27''' (7):110343
Prostate cancer detection through unbiased capture of methylated cell-free DNA. Description: Lleshi, Ermira, et al. Prostate cancer detection through unbiased capture of methylated cell-free DNA. ''iScience''. 2024 Jul 19; '''27''' (7):110330
Rumen and hindgut microbiome regulate average daily gain of preweaning Holstein heifer calves in different ways. Description: Xu, Sheng-Yang, et al. Rumen and hindgut microbiome regulate average daily gain of preweaning Holstein heifer calves in different ways. ''Microbiome''. 2024 Jul 19; '''12''' (1):131
The genome of African manatee Trichechus senegalensis reveals secondary adaptation to the aquatic environment. Description: Huang, Xin, et al. The genome of African manatee Trichechus senegalensis reveals secondary adaptation to the aquatic environment. ''iScience''. 2024 Jul 19; '''27''' (7):110394
ZnO nanoparticles encapsulated cellulose-lignin film for antibacterial and biodegradable food packaging. Description: Zhu, Xinyi, et al. ZnO nanoparticles encapsulated cellulose-lignin film for antibacterial and biodegradable food packaging. ''iScience''. 2024 Jul 19; '''27''' (7):110008
A chromosome-level genome assembly of Prosopocoilus inquinatus Westwood, 1848 (Coleoptera: Lucanidae). Description: Pang, Bo, et al. A chromosome-level genome assembly of Prosopocoilus inquinatus Westwood, 1848 (Coleoptera: Lucanidae). ''Sci Data''. 2024 Jul 20; '''11''' (1):808
The Bifidobacterium-dominated fecal microbiome in dairy calves shapes the characteristic growth phenotype of host. Description: Zhuang, Yimin, et al. The Bifidobacterium-dominated fecal microbiome in dairy calves shapes the characteristic growth phenotype of host. ''NPJ Biofilms Microbiomes''. 2024 Jul 21; '''10''' (1):59
Chromosome-level genome assembly and annotation of xerophyte secretohalophyte Reaumuria soongarica. Description: Song, Miaomiao, et al. Chromosome-level genome assembly and annotation of xerophyte secretohalophyte Reaumuria soongarica. ''Sci Data''. 2024 Jul 22; '''11''' (1):812
Methanogenic patterns in the gut microbiome are associated with survival in a population of feral horses. Description: Stothart, Mason R, et al. Methanogenic patterns in the gut microbiome are associated with survival in a population of feral horses. ''Nat Commun''. 2024 Jul 22; '''15''' (1):6012
Altitude-dependent agro-ecologies impact the microbiome diversity of scavenging indigenous chicken in Ethiopia. Description: Glendinning, Laura, et al. Altitude-dependent agro-ecologies impact the microbiome diversity of scavenging indigenous chicken in Ethiopia. ''Microbiome''. 2024 Jul 23; '''12''' (1):138
Average nucleotide identity-based Staphylococcus aureus strain grouping allows identification of strain-specific genes in the pangenome. Description: Raghuram, Vishnu, et al. Average nucleotide identity-based Staphylococcus aureus strain grouping allows identification of strain-specific genes in the pangenome. ''mSystems''. 2024 Jul 23; '''9''' (7):e0014324
Diverse and unconventional methanogens, methanotrophs, and methylotrophs in metagenome-assembled genomes from subsurface sediments of the Slate River floodplain, Crested Butte, CO, USA. Description: Rasmussen, Anna N, et al. Diverse and unconventional methanogens, methanotrophs, and methylotrophs in metagenome-assembled genomes from subsurface sediments of the Slate River floodplain, Crested Butte, CO, USA. ''mSystems''. 2024 Jul 23; '''9''' (7):e0031424
Extremely halophilic brine community manipulation shows higher robustness of microbiomes inhabiting human-driven solar saltern than naturally driven lake. Description: Liebana, Raquel, et al. Extremely halophilic brine community manipulation shows higher robustness of microbiomes inhabiting human-driven solar saltern than naturally driven lake. ''mSystems''. 2024 Jul 23; '''9''' (7):e0053824
Genomic analysis of the class Phycisphaerae reveals a versatile group of complex carbon-degrading bacteria. Description: Lenferink, Wouter B, et al. Genomic analysis of the class Phycisphaerae reveals a versatile group of complex carbon-degrading bacteria. ''Antonie Van Leeuwenhoek''. 2024 Jul 23; '''117''' (1):104
Global compositional and functional states of the human gut microbiome in health and disease. Description: Lee, Sunjae, et al. Global compositional and functional states of the human gut microbiome in health and disease. ''Genome Res''. 2024 Jul 23; '''34''' (6):967-978
Gut microbiota and metabolic changes in children with idiopathic short stature. Description: Yan, Luyan, et al. Gut microbiota and metabolic changes in children with idiopathic short stature. ''BMC Pediatr''. 2024 Jul 23; '''24''' (1):468
Metatranscriptomic analysis reveals dissimilarity in viral community activity between an ice-free and ice-covered winter in Lake Erie. Description: Denison, Elizabeth R, et al. Metatranscriptomic analysis reveals dissimilarity in viral community activity between an ice-free and ice-covered winter in Lake Erie. ''mSystems''. 2024 Jul 23; '''9''' (7):e0075324
PbI(2) Passivation of Three Dimensional PbS Quantum Dot Superlattices Toward Optoelectronic Metamaterials. Description: Pinna, Jacopo, et al. PbI(2) Passivation of Three Dimensional PbS Quantum Dot Superlattices Toward Optoelectronic Metamaterials. ''ACS Nano''. 2024 Jul 23; '''18''' (29):19124-19136
Toxicity to the Male Reproductive System after Exposure to Polystyrene Nanoplastics: A Macrogenomic and Metabolomic Analysis. Description: Zhang, Xue, et al. Toxicity to the Male Reproductive System after Exposure to Polystyrene Nanoplastics: A Macrogenomic and Metabolomic Analysis. ''Toxics''. 2024 Jul 23; '''12''' (8):
zDB: bacterial comparative genomics made easy. Description: Marquis, Bastian, et al. zDB: bacterial comparative genomics made easy. ''mSystems''. 2024 Jul 23; '''9''' (7):e0047324
A novel flavobacterial phage abundant during green tide, representing a new viral family, Zblingviridae. Description: Guo, Xiaoyue, et al. A novel flavobacterial phage abundant during green tide, representing a new viral family, Zblingviridae. ''Appl Environ Microbiol''. 2024 Jul 24; '''90''' (7):e0036724
Bifidobacterium longum subsp. longum BG-L47 boosts growth and activity of Limosilactobacillus reuteri DSM 17938 and its extracellular membrane vesicles. Description: Ermann Lundberg, Ludwig, et al. Bifidobacterium longum subsp. longum BG-L47 boosts growth and activity of Limosilactobacillus reuteri DSM 17938 and its extracellular membrane vesicles. ''Appl Environ Microbiol''. 2024 Jul 24; '''90''' (7):e0024724
Comparative membrane proteomic analysis of Tritrichomonas foetus isolates. Description: Rivero, Maria B, et al. Comparative membrane proteomic analysis of Tritrichomonas foetus isolates. ''Sci Rep''. 2024 Jul 24; '''14''' (1):17033
Aspergillus brasiliensis E_15.1: A Novel Thermophilic Endophyte from a Volcanic Crater Unveiled through Comprehensive Genome-Wide, Phenotypic Analysis, and Plant Growth-Promoting Trails. Description: Martirena-Ramirez, Amanda, et al. Aspergillus brasiliensis E_15.1: A Novel Thermophilic Endophyte from a Volcanic Crater Unveiled through Comprehensive Genome-Wide, Phenotypic Analysis, and Plant Growth-Promoting Trails. ''J Fungi (Basel)''. 2024 Jul 25; '''10''' (8):
Enteropathway: the metabolic pathway database for the human gut microbiota. Description: Shiroma, Hirotsugu, et al. Enteropathway: the metabolic pathway database for the human gut microbiota. ''Brief Bioinform''. 2024 Jul 25; '''25''' (5):
Synchrotron nano-FTIR spectroscopy for probing anticancer drugs at subcellular scale. Description: de Carvalho, Luis A E Batista, et al. Synchrotron nano-FTIR spectroscopy for probing anticancer drugs at subcellular scale. ''Sci Rep''. 2024 Jul 26; '''14''' (1):17166
High Degree of Polymerization of Chitin Oligosaccharides Produced from Shrimp Shell Waste by Enrichment Microbiota Using Two-Stage Temperature-Controlled Technique of Inducing Enzyme Production and Metagenomic Analysis of Microbiota Succession. Description: Pan, Delong, et al. High Degree of Polymerization of Chitin Oligosaccharides Produced from Shrimp Shell Waste by Enrichment Microbiota Using Two-Stage Temperature-Controlled Technique of Inducing Enzyme Production and Metagenomic Analysis of Microbiota Succession. ''Mar Drugs''. 2024 Jul 28; '''22''' (8):
Genomic insights into redox-driven microbial processes for carbon decomposition in thawing Arctic soils and permafrost. Description: Li, Yaoming, et al. Genomic insights into redox-driven microbial processes for carbon decomposition in thawing Arctic soils and permafrost. ''mSphere''. 2024 Jul 30; '''9''' (7):e0025924
Hierarchical multi-task deep learning-assisted construction of human gut microbiota reactive oxygen species-scavenging enzymes database. Description: Yan, Yueyang, et al. Hierarchical multi-task deep learning-assisted construction of human gut microbiota reactive oxygen species-scavenging enzymes database. ''mSphere''. 2024 Jul 30; '''9''' (7):e0034624
Metaproteomic analysis decodes trophic interactions of microorganisms in the dark ocean. Description: Zhao, Zihao, et al. Metaproteomic analysis decodes trophic interactions of microorganisms in the dark ocean. ''Nat Commun''. 2024 Jul 30; '''15''' (1):6411
Rodents consuming the same toxic diet harbor a unique functional core microbiome. Description: Stapleton, Tess E, et al. Rodents consuming the same toxic diet harbor a unique functional core microbiome. ''Anim Microbiome''. 2024 Jul 30; '''6''' (1):43
Asgard archaea defense systems and their roles in the origin of eukaryotic immunity. Description: Leao, Pedro, et al. Asgard archaea defense systems and their roles in the origin of eukaryotic immunity. ''Nat Commun''. 2024 Jul 31; '''15''' (1):6386
Altered gut microbe metabolites in patients with alcohol‑induced osteonecrosis of the femoral head: An integrated omics analysis. Description: Yue, Chen, et al. Altered gut microbe metabolites in patients with alcohol‑induced osteonecrosis of the femoral head: An integrated omics analysis. ''Exp Ther Med''. 2024 Aug; '''28''' (2):311
Cholestyramine alleviates bone and muscle loss in irritable bowel syndrome via regulating bile acid metabolism. Description: Chen, Ming, et al. Cholestyramine alleviates bone and muscle loss in irritable bowel syndrome via regulating bile acid metabolism. ''Cell Prolif''. 2024 Aug; '''57''' (8):e13638
Comparative genomic analysis identifies potential adaptive variation in Mycoplasma ovipneumoniae. Description: Andrews, Kimberly R, et al. Comparative genomic analysis identifies potential adaptive variation in Mycoplasma ovipneumoniae. ''Microb Genom''. 2024 Aug; '''10''' (8):
CysLT receptor-mediated NOX2 activation is required for IL-8 production in HMC-1 cells induced by Trichomonas vaginalis-derived secretory products. Description: Lee, Young Ah, et al. CysLT receptor-mediated NOX2 activation is required for IL-8 production in HMC-1 cells induced by Trichomonas vaginalis-derived secretory products. ''Parasites Hosts Dis''. 2024 Aug; '''62''' (3):270-280
Dynamin 2-mediated endocytosis of BLT1 is required for IL-8 production in HMC-1 cells induced by Trichomonas vaginalis-derived secretory products. Description: Lee, Young Ah, et al. Dynamin 2-mediated endocytosis of BLT1 is required for IL-8 production in HMC-1 cells induced by Trichomonas vaginalis-derived secretory products. ''Parasites Hosts Dis''. 2024 Aug; '''62''' (3):281-293
Ecological genomics in the Northern krill uncovers loci for local adaptation across ocean basins. Description: Unneberg, Per, et al. Ecological genomics in the Northern krill uncovers loci for local adaptation across ocean basins. ''Nat Commun''. 2024 Aug 1; '''15''' (1):6297
Impact of dietary protein and energy levels on fatty acid profile, gut microbiome and cecal metabolome in native growing chickens. Description: Zhou, Luli, et al. Impact of dietary protein and energy levels on fatty acid profile, gut microbiome and cecal metabolome in native growing chickens. ''Poult Sci''. 2024 Aug; '''103''' (8):103917
MDMA-assisted brief cognitive behavioral conjoint therapy for PTSD: Study protocol for a pilot study. Description: Morland, L A, et al. MDMA-assisted brief cognitive behavioral conjoint therapy for PTSD: Study protocol for a pilot study. ''Contemp Clin Trials Commun''. 2024 Aug; '''40''': 101314
Next-Generation Sequencing for Characterizing Respiratory Tract Virome and Improving Detection of Viral Pathogens in Children With Pneumonia. Description: Cui, Song, et al. Next-Generation Sequencing for Characterizing Respiratory Tract Virome and Improving Detection of Viral Pathogens in Children With Pneumonia. ''Influenza Other Respir Viruses''. 2024 Aug; '''18''' (8):e13362
Roseburia intestinalis-derived extracellular vesicles ameliorate colitis by modulating intestinal barrier, microbiome, and inflammatory responses. Description: Han, Hwa Seung, et al. Roseburia intestinalis-derived extracellular vesicles ameliorate colitis by modulating intestinal barrier, microbiome, and inflammatory responses. ''J Extracell Vesicles''. 2024 Aug; '''13''' (8):e12487
The gap-free genome and multi-omics analysis of Citrus reticulata 'Chachi' reveal the dynamics of fruit flavonoid biosynthesis. Description: Zhu, Congyi, et al. The gap-free genome and multi-omics analysis of Citrus reticulata 'Chachi' reveal the dynamics of fruit flavonoid biosynthesis. ''Hortic Res''. 2024 Aug; '''11''' (8):uhae177
The gapless genome assembly and multi-omics analyses unveil a pivotal regulatory mechanism of oil biosynthesis in the olive tree. Description: Lv, Jiaojiao, et al. The gapless genome assembly and multi-omics analyses unveil a pivotal regulatory mechanism of oil biosynthesis in the olive tree. ''Hortic Res''. 2024 Aug; '''11''' (8):uhae168
The jacktree genome and population genomics provides insights for the mechanisms of the germination obstacle and the conservation of endangered ornamental plants. Description: Zhu, Sheng, et al. The jacktree genome and population genomics provides insights for the mechanisms of the germination obstacle and the conservation of endangered ornamental plants. ''Hortic Res''. 2024 Aug; '''11''' (8):uhae166
Transcriptomic dataset of the development and maturation of the Rhipicephalus microplus ovary. Description: Cossio-Bayugar, Raquel, et al. Transcriptomic dataset of the development and maturation of the Rhipicephalus microplus ovary. ''Data Brief''. 2024 Aug; '''55''': 110661
Complex Genomes of Early Nucleocytoviruses Revealed by Ancient Origins of Viral Aminoacyl-tRNA Synthetases. Description: Kijima, Soichiro, et al. Complex Genomes of Early Nucleocytoviruses Revealed by Ancient Origins of Viral Aminoacyl-tRNA Synthetases. ''Mol Biol Evol''. 2024 Aug 2; '''41''' (8):
Exploring the Origins and Evolution of Oxygenic and Anoxygenic Photosynthesis in Deeply Branched Cyanobacteriota. Description: Tan, Sha, et al. Exploring the Origins and Evolution of Oxygenic and Anoxygenic Photosynthesis in Deeply Branched Cyanobacteriota. ''Mol Biol Evol''. 2024 Aug 2; '''41''' (8):
SegVir: Reconstruction of Complete Segmented RNA Viral Genomes from Metatranscriptomes. Description: Tang, Xubo, et al. SegVir: Reconstruction of Complete Segmented RNA Viral Genomes from Metatranscriptomes. ''Mol Biol Evol''. 2024 Aug 2; '''41''' (8):
Telomere-to-telomere genome assembly of sorghum. Description: Li, Meng, et al. Telomere-to-telomere genome assembly of sorghum. ''Sci Data''. 2024 Aug 2; '''11''' (1):835
Integrated metabolomic and transcriptomic analysis reveals biosynthesis mechanism of flavone and caffeoylquinic acid in chrysanthemum. Description: Lu, Chenfei, et al. Integrated metabolomic and transcriptomic analysis reveals biosynthesis mechanism of flavone and caffeoylquinic acid in chrysanthemum. ''BMC Genomics''. 2024 Aug 3; '''25''' (1):759
Isolation, genome analysis and tissue localization of Ceratobasidium theobromae, a new encounter pathogen of cassava in Southeast Asia. Description: Gil-Ordonez, Alejandra, et al. Isolation, genome analysis and tissue localization of Ceratobasidium theobromae, a new encounter pathogen of cassava in Southeast Asia. ''Sci Rep''. 2024 Aug 5; '''14''' (1):18139
Selection and Gene Duplication Associated With High-Elevation Diversification in Pristimantis, the Largest Terrestrial Vertebrate Genus. Description: Christodoulides, Nicholas, et al. Selection and Gene Duplication Associated With High-Elevation Diversification in Pristimantis, the Largest Terrestrial Vertebrate Genus. ''Genome Biol Evol''. 2024 Aug 5; '''16''' (8):
Efficient inference of large prokaryotic pangenomes with PanTA. Description: Le, Duc Quang, et al. Efficient inference of large prokaryotic pangenomes with PanTA. ''Genome Biol''. 2024 Aug 6; '''25''' (1):209
Engineering a dysbiotic biofilm model for testing root caries interventions through microbial modulation. Description: Dame-Teixeira, Naile, et al. Engineering a dysbiotic biofilm model for testing root caries interventions through microbial modulation. ''Microbiome''. 2024 Aug 6; '''12''' (1):145
Full-genome sequencing of dozens of new DNA viruses found in Spanish bat feces. Description: Buigues, Jaime, et al. Full-genome sequencing of dozens of new DNA viruses found in Spanish bat feces. ''Microbiol Spectr''. 2024 Aug 6; '''12''' (8):e0067524
Shaping the tripartite symbiosis: are termite microbiome functions directed by the environmentally acquired fungal cultivar? Description: Murphy, Robert M, et al. Shaping the tripartite symbiosis: are termite microbiome functions directed by the environmentally acquired fungal cultivar? ''Anim Microbiome''. 2024 Aug 6; '''6''' (1):44
Bacterial strain sharing between humans, animals, and the environment among urban households. Description: Kim, Daehyun D, et al. Bacterial strain sharing between humans, animals, and the environment among urban households. ''medRxiv''. 2024 Aug 7;
The reference genome of an endangered Asteraceae, Deinandra increscens subsp. villosa, endemic to the Central Coast of California. Description: McEvoy, Susan L, et al. The reference genome of an endangered Asteraceae, Deinandra increscens subsp. villosa, endemic to the Central Coast of California. ''G3 (Bethesda)''. 2024 Aug 7; '''14''' (8):
Characterizing seed dormancy in Epimedium brevicornu Maxim.: Development of novel chill models and determination of dormancy release mechanisms by transcriptomics. Description: Li, Pengshu, et al. Characterizing seed dormancy in Epimedium brevicornu Maxim.: Development of novel chill models and determination of dormancy release mechanisms by transcriptomics. ''BMC Plant Biol''. 2024 Aug 8; '''24''' (1):757
Proteomic stable isotope probing with an upgraded Sipros algorithm for improved identification and quantification of isotopically labeled proteins. Description: Xiong, Yi, et al. Proteomic stable isotope probing with an upgraded Sipros algorithm for improved identification and quantification of isotopically labeled proteins. ''Microbiome''. 2024 Aug 8; '''12''' (1):148
Identification of novel cattle (Bos taurus) genes and biological insights of their function in pre-implantation embryo development. Description: Schettini, Gustavo P, et al. Identification of novel cattle (Bos taurus) genes and biological insights of their function in pre-implantation embryo development. ''BMC Genomics''. 2024 Aug 9; '''25''' (1):775
The A226D Mutation of OmpC Leads to Increased Susceptibility to beta-Lactam Antibiotics in Escherichia coli. Description: Zhu, Jiaming, et al. The A226D Mutation of OmpC Leads to Increased Susceptibility to beta-Lactam Antibiotics in Escherichia coli. ''Biology (Basel)''. 2024 Aug 9; '''13''' (8):
Benchmarking bacterial taxonomic classification using nanopore metagenomics data of several mock communities. Description: Van Uffelen, Alexander, et al. Benchmarking bacterial taxonomic classification using nanopore metagenomics data of several mock communities. ''Sci Data''. 2024 Aug 10; '''11''' (1):864
Globally distributed marine Gemmatimonadota have unique genomic potentials. Description: Gong, Xianzhe, et al. Globally distributed marine Gemmatimonadota have unique genomic potentials. ''Microbiome''. 2024 Aug 10; '''12''' (1):149
Horizontal gene transfer and symbiotic microorganisms regulate the adaptive evolution of intertidal algae, Porphyra sense lato. Description: Wang, Wenlei, et al. Horizontal gene transfer and symbiotic microorganisms regulate the adaptive evolution of intertidal algae, Porphyra sense lato. ''Commun Biol''. 2024 Aug 11; '''7''' (1):976
Allopolyploidization from two dioecious ancestors leads to recurrent evolution of sex chromosomes. Description: He, Li, et al. Allopolyploidization from two dioecious ancestors leads to recurrent evolution of sex chromosomes. ''Nat Commun''. 2024 Aug 12; '''15''' (1):6893
A Multipurpose Metallophore and Its Copper Complexes with Diverse Catalytic Antioxidant Properties to Deal with Metal and Oxidative Stress Disorders: A Combined Experimental, Theoretical, and In Vitro Study. Description: Menezes, Lucas B, et al. A Multipurpose Metallophore and Its Copper Complexes with Diverse Catalytic Antioxidant Properties to Deal with Metal and Oxidative Stress Disorders: A Combined Experimental, Theoretical, and In Vitro Study. ''Inorg Chem''. 2024 Aug 12; '''63''' (32):14827-14850
Antibiotic resistance gene dynamics in the commensal infant gut microbiome over the first year of life. Description: Trosvik, Pal, et al. Antibiotic resistance gene dynamics in the commensal infant gut microbiome over the first year of life. ''Sci Rep''. 2024 Aug 12; '''14''' (1):18701
Moringa leaf meal exerts growth benefits in small ruminants through modulating the gastrointestinal microbiome. Description: Nehra, Chitra, et al. Moringa leaf meal exerts growth benefits in small ruminants through modulating the gastrointestinal microbiome. ''Appl Microbiol Biotechnol''. 2024 Aug 12; '''108''' (1):438
Chromosome-level and haplotype-resolved genome assembly of Dracaena cambodiana (Asparagaceae). Description: Chen, Bao-Zheng, et al. Chromosome-level and haplotype-resolved genome assembly of Dracaena cambodiana (Asparagaceae). ''Sci Data''. 2024 Aug 13; '''11''' (1):873
Chromosome-level genome assembly and annotation of Flueggea virosa (Phyllanthaceae). Description: Chen, Bao-Zheng, et al. Chromosome-level genome assembly and annotation of Flueggea virosa (Phyllanthaceae). ''Sci Data''. 2024 Aug 13; '''11''' (1):875
Novel microwave assisted carboxymethyl-graphene oxide and its hepatoprotective activity. Description: Tohamy, Hebat-Allah S, et al. Novel microwave assisted carboxymethyl-graphene oxide and its hepatoprotective activity. ''BMC Pharmacol Toxicol''. 2024 Aug 13; '''25''' (1):50
Synergistic pectin deconstruction is a prerequisite for mutualistic interactions between honeybee gut bacteria. Description: Tang, Junbo, et al. Synergistic pectin deconstruction is a prerequisite for mutualistic interactions between honeybee gut bacteria. ''Nat Commun''. 2024 Aug 13; '''15''' (1):6937
SynGAP: a synteny-based toolkit for gene structure annotation polishing. Description: Wu, Fengqi, et al. SynGAP: a synteny-based toolkit for gene structure annotation polishing. ''Genome Biol''. 2024 Aug 13; '''25''' (1):218
De Novo Transcriptome Assembly of Cedar (Cedrela odorata L.) and Differential Gene Expression Involved in Herbivore Resistance. Description: Guzman, Luis Felipe, et al. De Novo Transcriptome Assembly of Cedar (Cedrela odorata L.) and Differential Gene Expression Involved in Herbivore Resistance. ''Curr Issues Mol Biol''. 2024 Aug 14; '''46''' (8):8794-8806
Genomic characterization of the bacterial phylum Candidatus Effluviviacota, a cosmopolitan member of the global seep microbiome. Description: Su, Lei, et al. Genomic characterization of the bacterial phylum Candidatus Effluviviacota, a cosmopolitan member of the global seep microbiome. ''mBio''. 2024 Aug 14; '''15''' (8):e0099224
Microbiome-informed study of the mechanistic basis of methane inhibition by Asparagopsis taxiformis in dairy cattle. Description: Indugu, Nagaraju, et al. Microbiome-informed study of the mechanistic basis of methane inhibition by Asparagopsis taxiformis in dairy cattle. ''mBio''. 2024 Aug 14; '''15''' (8):e0078224
A chromosomal-level genome assembly of Serrognathus titanus Boisduval, 1835 (Coleoptera: Lucanidae). Description: Jin, Jianfeng, et al. A chromosomal-level genome assembly of Serrognathus titanus Boisduval, 1835 (Coleoptera: Lucanidae). ''Sci Data''. 2024 Aug 15; '''11''' (1):888
Genomic characterization of Volzhskoe tick virus (Bunyaviricetes) from a Hyalomma marginatum tick, Hungary. Description: Foldvari, Gabor, et al. Genomic characterization of Volzhskoe tick virus (Bunyaviricetes) from a Hyalomma marginatum tick, Hungary. ''Sci Rep''. 2024 Aug 15; '''14''' (1):18945
Macrogenomics Reveals Effects on Marine Microbial Communities during Oplegnathus punctatus Enclosure Farming. Description: Wang, Lijun, et al. Macrogenomics Reveals Effects on Marine Microbial Communities during Oplegnathus punctatus Enclosure Farming. ''Biology (Basel)''. 2024 Aug 15; '''13''' (8):
Chromosome-level genome assemblies reveal genome evolution of an invasive plant Phragmites australis. Description: Wang, Cui, et al. Chromosome-level genome assemblies reveal genome evolution of an invasive plant Phragmites australis. ''Commun Biol''. 2024 Aug 17; '''7''' (1):1007
Trans2express - de novo transcriptome assembly pipeline optimized for gene expression analysis. Description: Kasianova, Aleksandra M, et al. Trans2express - de novo transcriptome assembly pipeline optimized for gene expression analysis. ''Plant Methods''. 2024 Aug 17; '''20''' (1):128
Creating and leveraging bespoke large-scale knowledge graphs for comparative genomics and multi-omics drug discovery with SocialGene. Description: Clark, Chase M, et al. Creating and leveraging bespoke large-scale knowledge graphs for comparative genomics and multi-omics drug discovery with SocialGene. ''bioRxiv''. 2024 Aug 19;
Impact of host species on assembly, composition, and functional profiles of phycosphere microbiomes. Description: Roager, Line, et al. Impact of host species on assembly, composition, and functional profiles of phycosphere microbiomes. ''mSystems''. 2024 Aug 20; '''9''' (8):e0058324
Recovery of 240 metagenome-assembled genomes from coastal mariculture environments in South Korea. Description: Seong, Hoon Je, et al. Recovery of 240 metagenome-assembled genomes from coastal mariculture environments in South Korea. ''Sci Data''. 2024 Aug 20; '''11''' (1):902
Spermidine augments salt stress resilience in rice roots potentially by enhancing OsbZIP73's RNA binding capacity. Description: Shen, Xuefeng, et al. Spermidine augments salt stress resilience in rice roots potentially by enhancing OsbZIP73's RNA binding capacity. ''BMC Plant Biol''. 2024 Aug 20; '''24''' (1):786
Variability in n-caprylate and n-caproate producing microbiomes in reactors with in-line product extraction. Description: Spirito, Catherine M, et al. Variability in n-caprylate and n-caproate producing microbiomes in reactors with in-line product extraction. ''mSystems''. 2024 Aug 20; '''9''' (8):e0041624
Viral and thermal lysis facilitates transmission of antibiotic resistance genes during composting. Description: Ai, Chaofan, et al. Viral and thermal lysis facilitates transmission of antibiotic resistance genes during composting. ''Appl Environ Microbiol''. 2024 Aug 21; '''90''' (8):e0069524
Genetic diversity and cross-species transmissibility of bat-associated picornaviruses from Spain. Description: Carrascosa-Saez, Marc, et al. Genetic diversity and cross-species transmissibility of bat-associated picornaviruses from Spain. ''Virol J''. 2024 Aug 22; '''21''' (1):193
Integrated-omics analysis with explainable deep networks on pathobiology of infant bronchiolitis. Description: Ooka, Tadao, et al. Integrated-omics analysis with explainable deep networks on pathobiology of infant bronchiolitis. ''NPJ Syst Biol Appl''. 2024 Aug 22; '''10''' (1):93
Molecular characterization of PSEUDO RESPONSE REGULATOR family in Rosaceae and function of PbPRR59a and PbPRR59b in flowering regulation. Description: Liu, Zhe, et al. Molecular characterization of PSEUDO RESPONSE REGULATOR family in Rosaceae and function of PbPRR59a and PbPRR59b in flowering regulation. ''BMC Genomics''. 2024 Aug 22; '''25''' (1):794
SoxC and MmpReg promote blastema formation in whole-body regeneration of fragmenting potworms Enchytraeus japonensis. Description: Fujita, Toshiyuki, et al. SoxC and MmpReg promote blastema formation in whole-body regeneration of fragmenting potworms Enchytraeus japonensis. ''Nat Commun''. 2024 Aug 22; '''15''' (1):6659
Genomic Sequencing and Functional Analysis of the Ex-Type Strain of Malbranchea zuffiana. Description: Granados-Casas, Alan Omar, et al. Genomic Sequencing and Functional Analysis of the Ex-Type Strain of Malbranchea zuffiana. ''J Fungi (Basel)''. 2024 Aug 24; '''10''' (9):
Host specificity and cophylogeny in the "animal-gut bacteria-phage" tripartite system. Description: Feng, Ye, et al. Host specificity and cophylogeny in the "animal-gut bacteria-phage" tripartite system. ''NPJ Biofilms Microbiomes''. 2024 Aug 27; '''10''' (1):72
Taxonomy of introns and the evolution of minor introns. Description: Olthof, Anouk M, et al. Taxonomy of introns and the evolution of minor introns. ''Nucleic Acids Res''. 2024 Aug 27; '''52''' (15):9247-9266
A chromosome-level genome assembly of the gall maker pest inquiline, Diomorus aiolomorphi Kamijo (Hymenoptera: Torymidae). Description: Yuan, Ruizhong, et al. A chromosome-level genome assembly of the gall maker pest inquiline, Diomorus aiolomorphi Kamijo (Hymenoptera: Torymidae). ''Sci Data''. 2024 Aug 29; '''11''' (1):944
Effects of Defatted Rice Bran-Fortified Bread on the Gut Microbiota Composition of Healthy Adults With Low Dietary Fiber Intake: Protocol for a Crossover Randomized Controlled Trial. Description: Ng, Hwei Min, et al. Effects of Defatted Rice Bran-Fortified Bread on the Gut Microbiota Composition of Healthy Adults With Low Dietary Fiber Intake: Protocol for a Crossover Randomized Controlled Trial. ''JMIR Res Protoc''. 2024 Aug 29; '''13''': e59227
The role of halophyte-induced saline fertile islands in soil microbial biogeochemical cycling across arid ecosystems. Description: Zhao, Shuai, et al. The role of halophyte-induced saline fertile islands in soil microbial biogeochemical cycling across arid ecosystems. ''Commun Biol''. 2024 Aug 29; '''7''' (1):1061
Genomic insights on carotenoid synthesis by extremely halophilic archaea Haloarcula rubripromontorii BS2, Haloferax lucentense BBK2 and Halogeometricum borinquense E3 isolated from the solar salterns of India. Description: Nagar, Devika N, et al. Genomic insights on carotenoid synthesis by extremely halophilic archaea Haloarcula rubripromontorii BS2, Haloferax lucentense BBK2 and Halogeometricum borinquense E3 isolated from the solar salterns of India. ''Sci Rep''. 2024 Aug 30; '''14''' (1):20214
The mechanism of bile acid metabolism regulating lipid metabolism and inflammatory response in T2DM through the gut-liver axis. Description: Wang, Yan, et al. The mechanism of bile acid metabolism regulating lipid metabolism and inflammatory response in T2DM through the gut-liver axis. ''Heliyon''. 2024 Aug 30; '''10''' (16):e35421
A catalog of small proteins from the global microbiome. Description: Duan, Yiqian, et al. A catalog of small proteins from the global microbiome. ''Nat Commun''. 2024 Aug 31; '''15''' (1):7563
Metagenome reveals the midgut microbial community of Haemaphysalis qinghaiensis ticks collected from yaks and Tibetan sheep. Description: Zhang, Ying, et al. Metagenome reveals the midgut microbial community of Haemaphysalis qinghaiensis ticks collected from yaks and Tibetan sheep. ''Parasit Vectors''. 2024 Aug 31; '''17''' (1):370
Metagenomic analysis of rats with diarrhea treated with mixed probiotics: response to consecutive and alternate-hour supplementation. Description: Wang, Anqi, et al. Metagenomic analysis of rats with diarrhea treated with mixed probiotics: response to consecutive and alternate-hour supplementation. ''Transl Pediatr''. 2024 Aug 31; '''13''' (8):1336-1358
Adaptation of Fusarium Head Blight Pathogens to Changes in Agricultural Practices and Human Migration. Description: Yang, Meixin, et al. Adaptation of Fusarium Head Blight Pathogens to Changes in Agricultural Practices and Human Migration. ''Adv Sci (Weinh)''. 2024 Sep; '''11''' (36):e2401899
A taxon-rich and genome-scale phylogeny of Opisthokonta. Description: Liu, Hongyue, et al. A taxon-rich and genome-scale phylogeny of Opisthokonta. ''PLoS Biol''. 2024 Sep; '''22''' (9):e3002794
Birth of protein folds and functions in the virome. Description: Nomburg, Jason, et al. Birth of protein folds and functions in the virome. ''Nature''. 2024 Sep; '''633''' (8030):710-717
Breed-Driven Microbiome Heterogeneity Regulates Intestinal Stem Cell Proliferation via Lactobacillus-Lactate-GPR81 Signaling. Description: Wu, Haiqin, et al. Breed-Driven Microbiome Heterogeneity Regulates Intestinal Stem Cell Proliferation via Lactobacillus-Lactate-GPR81 Signaling. ''Adv Sci (Weinh)''. 2024 Sep; '''11''' (33):e2400058
Diverse signatures of convergent evolution in cactus-associated yeasts. Description: Goncalves, Carla, et al. Diverse signatures of convergent evolution in cactus-associated yeasts. ''PLoS Biol''. 2024 Sep; '''22''' (9):e3002832
Enhanced nitrate reduction in hypotrophic waters with integrated photocatalysis and biodegradation. Description: Xue, Bingjie, et al. Enhanced nitrate reduction in hypotrophic waters with integrated photocatalysis and biodegradation. ''Environ Sci Ecotechnol''. 2024 Sep; '''21''': 100390
Evaluation of commercial RNA extraction kits for long-read metatranscriptomics in soil. Description: Barber, Daniel G, et al. Evaluation of commercial RNA extraction kits for long-read metatranscriptomics in soil. ''Microb Genom''. 2024 Sep; '''10''' (9):
Genomic data provides insights into the evolutionary history and adaptive differentiation of two tetraploid strawberries. Description: Lin, Hanyang, et al. Genomic data provides insights into the evolutionary history and adaptive differentiation of two tetraploid strawberries. ''Hortic Res''. 2024 Sep; '''11''' (9):uhae194
Global marine microbial diversity and its potential in bioprospecting. Description: Chen, Jianwei, et al. Global marine microbial diversity and its potential in bioprospecting. ''Nature''. 2024 Sep; '''633''' (8029):371-379
Identification of a Novel Parvovirus in the Arctic Wolf (Canis lupus arctos). Description: Dai, Ziyuan, et al. Identification of a Novel Parvovirus in the Arctic Wolf (Canis lupus arctos). ''Pol J Microbiol''. 2024 Sep 1; '''73''' (3):395-401
Intensified river salinization alters nitrogen-cycling microbial communities in arid and semi-arid regions of China. Description: Pang, Qingqing, et al. Intensified river salinization alters nitrogen-cycling microbial communities in arid and semi-arid regions of China. ''Eco Environ Health''. 2024 Sep; '''3''' (3):271-280
Mapping glycoprotein structure reveals Flaviviridae evolutionary history. Description: Mifsud, Jonathon C O, et al. Mapping glycoprotein structure reveals Flaviviridae evolutionary history. ''Nature''. 2024 Sep; '''633''' (8030):695-703
Metagenomic functional profiling: to sketch or not to sketch? Description: Hera, Mahmudur Rahman, et al. Metagenomic functional profiling: to sketch or not to sketch? ''Bioinformatics''. 2024 Sep 1; '''40''' (Suppl 2):ii165-ii173
Multi-omics revealed the mechanism of feed efficiency in sheep by the combined action of the host and rumen microbiota. Description: Zhou, Guangchen, et al. Multi-omics revealed the mechanism of feed efficiency in sheep by the combined action of the host and rumen microbiota. ''Anim Nutr''. 2024 Sep; '''18''': 367-379
Origin and evolution of the bread wheat D genome. Description: Cavalet-Giorsa, Emile, et al. Origin and evolution of the bread wheat D genome. ''Nature''. 2024 Sep; '''633''' (8031):848-855
The discovery of novel variants reveals the genetic diversity and potential origin of Seoul orthohantavirus. Description: Kuang, Guopeng, et al. The discovery of novel variants reveals the genetic diversity and potential origin of Seoul orthohantavirus. ''PLoS Negl Trop Dis''. 2024 Sep; '''18''' (9):e0012478
The ribosome lowers the entropic penalty of protein folding. Description: Streit, Julian O, et al. The ribosome lowers the entropic penalty of protein folding. ''Nature''. 2024 Sep; '''633''' (8028):232-239
UDP-glycosyltransferase UGT96C10 functions as a novel detoxification factor for conjugating the activated dinitrotoluene sulfonate in switchgrass. Description: Su, Kunlong, et al. UDP-glycosyltransferase UGT96C10 functions as a novel detoxification factor for conjugating the activated dinitrotoluene sulfonate in switchgrass. ''Plant Biotechnol J''. 2024 Sep; '''22''' (9):2530-2540
Structures of Native Doublet Microtubules from Trichomonas vaginalis Reveal Parasite-Specific Proteins as Potential Drug Targets. Description: Stevens, Alexander, et al. Structures of Native Doublet Microtubules from Trichomonas vaginalis Reveal Parasite-Specific Proteins as Potential Drug Targets. ''Res Sq''. 2024 Sep 2;
Comparative Genomics Uncovers the Evolutionary Dynamics of Detoxification and Insecticide Target Genes Across 11 Phlebotomine Sand Flies. Description: Charamis, Jason, et al. Comparative Genomics Uncovers the Evolutionary Dynamics of Detoxification and Insecticide Target Genes Across 11 Phlebotomine Sand Flies. ''Genome Biol Evol''. 2024 Sep 3; '''16''' (9):
Influence of thinning on carbon storage mediated by soil physicochemical properties and microbial community composition in large Chinese fir timber plantation. Description: Huang, Lei, et al. Influence of thinning on carbon storage mediated by soil physicochemical properties and microbial community composition in large Chinese fir timber plantation. ''Carbon Balance Manag''. 2024 Sep 3; '''19''' (1):29
A chromosome-level genome assembly of the disco clam, Ctenoides ales. Description: A chromosome-level genome assembly of the disco clam, Ctenoides ales. ''''. 2024 Sep 4; '''14''' (9):
Multiomic Insights into Human Health: Gut Microbiomes of Hunter-Gatherer, Agropastoral, and Western Urban Populations. Description: Singh, Harinder, et al. Multiomic Insights into Human Health: Gut Microbiomes of Hunter-Gatherer, Agropastoral, and Western Urban Populations. ''bioRxiv''. 2024 Sep 4;
Strain heterogeneity in a non-pathogenic Aspergillus fungus highlights factors associated with virulence. Description: Rinker, David C, et al. Strain heterogeneity in a non-pathogenic Aspergillus fungus highlights factors associated with virulence. ''Commun Biol''. 2024 Sep 4; '''7''' (1):1082
The first Chromosomal-level genome assembly of Sageretia thea using Nanopore long reads and Pore-C technology. Description: Jo, Jihoon, et al. The first Chromosomal-level genome assembly of Sageretia thea using Nanopore long reads and Pore-C technology. ''Sci Data''. 2024 Sep 4; '''11''' (1):959
Comparative Genomics of Fungi in Nectriaceae Reveals Their Environmental Adaptation and Conservation Strategies. Description: Rissi, Daniel Vasconcelos, et al. Comparative Genomics of Fungi in Nectriaceae Reveals Their Environmental Adaptation and Conservation Strategies. ''J Fungi (Basel)''. 2024 Sep 5; '''10''' (9):
A probiotic Limosilactobacillus fermentum GR-3 mitigates colitis-associated tumorigenesis in mice via modulating gut microbiome. Description: Zhou, Tuoyu, et al. A probiotic Limosilactobacillus fermentum GR-3 mitigates colitis-associated tumorigenesis in mice via modulating gut microbiome. ''NPJ Sci Food''. 2024 Sep 6; '''8''' (1):61
Disentangling abiotic and biotic effects of treated wastewater on stream biofilm resistomes enables the discovery of a new planctomycete beta-lactamase. Description: Attrah, Mustafa, et al. Disentangling abiotic and biotic effects of treated wastewater on stream biofilm resistomes enables the discovery of a new planctomycete beta-lactamase. ''Microbiome''. 2024 Sep 6; '''12''' (1):164
Metagenomic analysis reveals high diversity of gut viromes in yaks (Bos grunniens) from the Qinghai-Tibet Plateau. Description: Lu, Xiang, et al. Metagenomic analysis reveals high diversity of gut viromes in yaks (Bos grunniens) from the Qinghai-Tibet Plateau. ''Commun Biol''. 2024 Sep 6; '''7''' (1):1097
Evaluating metagenomics and targeted approaches for diagnosis and surveillance of viruses. Description: Buddle, Sarah, et al. Evaluating metagenomics and targeted approaches for diagnosis and surveillance of viruses. ''Genome Med''. 2024 Sep 9; '''16''' (1):111
Genome-centric metagenomes unveiling the hidden resistome in an anchialine cave. Description: Vojvoda Zeljko, Tanja, et al. Genome-centric metagenomes unveiling the hidden resistome in an anchialine cave. ''Environ Microbiome''. 2024 Sep 9; '''19''' (1):67
The genomes of seven economic Caesalpinioideae trees provide insights into polyploidization history and secondary metabolite biosynthesis. Description: Chen, Rong, et al. The genomes of seven economic Caesalpinioideae trees provide insights into polyploidization history and secondary metabolite biosynthesis. ''Plant Commun''. 2024 Sep 9; '''5''' (9):100944
Social wasp-associated Tsukamurella sp. strains showed promising biosynthetic and bioactive potential for discovery of novel compounds. Description: Rojas-Villalta, Dorian, et al. Social wasp-associated Tsukamurella sp. strains showed promising biosynthetic and bioactive potential for discovery of novel compounds. ''Sci Rep''. 2024 Sep 10; '''14''' (1):21118
Strategy to mitigate substrate inhibition in wastewater treatment systems. Description: Li, Beiying, et al. Strategy to mitigate substrate inhibition in wastewater treatment systems. ''Nat Commun''. 2024 Sep 10; '''15''' (1):7920
The NEREA Augmented Observatory: an integrative approach to marine coastal ecology. Description: Campese, Lucia, et al. The NEREA Augmented Observatory: an integrative approach to marine coastal ecology. ''Sci Data''. 2024 Sep 10; '''11''' (1):989
Metagenomic profiling of gut microbiota in Fall Armyworm (Spodoptera frugiperda) larvae fed on different host plants. Description: Wu, Li-Hong, et al. Metagenomic profiling of gut microbiota in Fall Armyworm (Spodoptera frugiperda) larvae fed on different host plants. ''BMC Microbiol''. 2024 Sep 11; '''24''' (1):337
Comparative analysis of the genomes and aflatoxin production patterns of three species within the Aspergillus section Flavi reveals an undescribed chemotype and habitat-specific genetic traits. Description: Schamann, Alexandra, et al. Comparative analysis of the genomes and aflatoxin production patterns of three species within the Aspergillus section Flavi reveals an undescribed chemotype and habitat-specific genetic traits. ''Commun Biol''. 2024 Sep 13; '''7''' (1):1134
Comparative Genomic Analyses of Colletotrichum lindemuthianum Pathotypes with Different Virulence Levels and Lifestyles. Description: Morelos-Martinez, Ma Irene, et al. Comparative Genomic Analyses of Colletotrichum lindemuthianum Pathotypes with Different Virulence Levels and Lifestyles. ''J Fungi (Basel)''. 2024 Sep 13; '''10''' (9):
A chromosome-level genome assembly of the Brontispa longissima. Description: Li, Zaiyuan, et al. A chromosome-level genome assembly of the Brontispa longissima. ''Sci Data''. 2024 Sep 14; '''11''' (1):1002
Landscape of the metaplasmidome of deep-sea hydrothermal vents located at Arctic Mid-Ocean Ridges in the Norwegian-Greenland Sea: ecological insights from comparative analysis of plasmid identification tools. Description: Ciuchcinski, Karol, et al. Landscape of the metaplasmidome of deep-sea hydrothermal vents located at Arctic Mid-Ocean Ridges in the Norwegian-Greenland Sea: ecological insights from comparative analysis of plasmid identification tools. ''FEMS Microbiol Ecol''. 2024 Sep 14; '''100''' (10):
Metformin increases gut multidrug resistance genes in type 2 diabetes, potentially linked to Escherichia coli. Description: Kim, Han-Bin, et al. Metformin increases gut multidrug resistance genes in type 2 diabetes, potentially linked to Escherichia coli. ''Sci Rep''. 2024 Sep 14; '''14''' (1):21480
Analysis of vaginal flora diversity and study on the role of Porphyromonas asaccharolytica in promoting IL-1beta in regulating cervical cancer. Description: Bai, Bing, et al. Analysis of vaginal flora diversity and study on the role of Porphyromonas asaccharolytica in promoting IL-1beta in regulating cervical cancer. ''Sci Rep''. 2024 Sep 17; '''14''' (1):21731
Demographic and zoological drivers of infectome diversity in companion cats with ascites. Description: Sun, Yankuo, et al. Demographic and zoological drivers of infectome diversity in companion cats with ascites. ''mSystems''. 2024 Sep 17; '''9''' (9):e0063624
Hyperexpansion of genetic diversity and metabolic capacity of extremophilic bacteria and archaea in ancient Andean lake sediments. Description: Lezcano, Maria Angeles, et al. Hyperexpansion of genetic diversity and metabolic capacity of extremophilic bacteria and archaea in ancient Andean lake sediments. ''Microbiome''. 2024 Sep 17; '''12''' (1):176
Pangenomic landscapes shape performances of a synthetic genetic circuit across Stutzerimonas species. Description: Chan, Dennis Tin Chat, et al. Pangenomic landscapes shape performances of a synthetic genetic circuit across Stutzerimonas species. ''mSystems''. 2024 Sep 17; '''9''' (9):e0084924
Profiles and interactions of gut microbiome and intestinal microRNAs in pediatric Crohn's disease. Description: Lv, Yao, et al. Profiles and interactions of gut microbiome and intestinal microRNAs in pediatric Crohn's disease. ''mSystems''. 2024 Sep 17; '''9''' (9):e0078324
Accurately predicting enzyme functions through geometric graph learning on ESMFold-predicted structures. Description: Song, Yidong, et al. Accurately predicting enzyme functions through geometric graph learning on ESMFold-predicted structures. ''Nat Commun''. 2024 Sep 18; '''15''' (1):8180
A haplotype-resolved genome assembly of Coptis teeta, an endangered plant of significant medicinal value. Description: Wang, Ya, et al. A haplotype-resolved genome assembly of Coptis teeta, an endangered plant of significant medicinal value. ''Sci Data''. 2024 Sep 18; '''11''' (1):1012
Haplotype-resolved genome assembly of the upas tree (Antiaris toxicaria). Description: Miao, Ke, et al. Haplotype-resolved genome assembly of the upas tree (Antiaris toxicaria). ''Sci Data''. 2024 Sep 18; '''11''' (1):1011
High-quality chromosome-level genomic insights into molecular adaptation to low-temperature stress in Madhuca longifolia in southern subtropical China. Description: Wang, Shuyu, et al. High-quality chromosome-level genomic insights into molecular adaptation to low-temperature stress in Madhuca longifolia in southern subtropical China. ''BMC Genomics''. 2024 Sep 18; '''25''' (1):877
Long-read de novo genome assembly of Gulf toadfish (Opsanus beta). Description: Kron, Nicholas S, et al. Long-read de novo genome assembly of Gulf toadfish (Opsanus beta). ''BMC Genomics''. 2024 Sep 18; '''25''' (1):871
Novel, active, and uncultured hydrocarbon-degrading microbes in the ocean. Description: Howe, Kathryn L, et al. Novel, active, and uncultured hydrocarbon-degrading microbes in the ocean. ''Appl Environ Microbiol''. 2024 Sep 18; '''90''' (9):e0122424
The tal gene of lactococcal bacteriophage TP901-1 is involved in DNA release following host adsorption. Description: Ruiz-Cruz, Sofia, et al. The tal gene of lactococcal bacteriophage TP901-1 is involved in DNA release following host adsorption. ''Appl Environ Microbiol''. 2024 Sep 18; '''90''' (9):e0069424
Multi-way modelling of oral microbial dynamics and host-microbiome interactions during induced gingivitis. Description: van der Ploeg, G R, et al. Multi-way modelling of oral microbial dynamics and host-microbiome interactions during induced gingivitis. ''NPJ Biofilms Microbiomes''. 2024 Sep 19; '''10''' (1):89
Trait-based study predicts glycerol/diol dehydratases as a key function of the gut microbiota of hindgut-fermenting carnivores. Description: Li, Qing, et al. Trait-based study predicts glycerol/diol dehydratases as a key function of the gut microbiota of hindgut-fermenting carnivores. ''Microbiome''. 2024 Sep 19; '''12''' (1):178
Chromosome-level genome assembly of Tritrichomonas foetus, the causative agent of Bovine Trichomonosis. Description: Abdel-Glil, Mostafa Y, et al. Chromosome-level genome assembly of Tritrichomonas foetus, the causative agent of Bovine Trichomonosis. ''Sci Data''. 2024 Sep 20; '''11''' (1):1030
Dietary fibers boost gut microbiota-produced B vitamin pool and alter host immune landscape. Description: Grant, Erica T, et al. Dietary fibers boost gut microbiota-produced B vitamin pool and alter host immune landscape. ''Microbiome''. 2024 Sep 23; '''12''' (1):179
The genomes of Australian wild limes. Description: Nakandala, Upuli, et al. The genomes of Australian wild limes. ''Plant Mol Biol''. 2024 Sep 24; '''114''' (5):102
Dynamics of Spike-Specific Neutralizing Antibodies Across Five-Year Emerging SARS-CoV-2 Variants of Concern Reveal Conserved Epitopes that Protect Against Severe COVID-19. Description: Zayou, Latifa, et al. Dynamics of Spike-Specific Neutralizing Antibodies Across Five-Year Emerging SARS-CoV-2 Variants of Concern Reveal Conserved Epitopes that Protect Against Severe COVID-19. ''bioRxiv''. 2024 Sep 25;
Identification and characterization of archaeal-type FAD synthase as a novel tractable drug target from the parasitic protozoa Entamoeba histolytica. Description: Wulansari, Dewi, et al. Identification and characterization of archaeal-type FAD synthase as a novel tractable drug target from the parasitic protozoa Entamoeba histolytica. ''mSphere''. 2024 Sep 25; '''9''' (9):e0034724
In Search of Covalency Measure of Gd(III)-Ligand Interactions. Description: Janicki, Rafal, et al. In Search of Covalency Measure of Gd(III)-Ligand Interactions. ''J Phys Chem Lett''. 2024 Sep 26; '''15''' (38):9723-9737
RNAseq-Based Carboxylesterase Nl-EST1 Gene Expression Plasticity Identification and Its Potential Involvement in Fenobucarb Resistance in the Brown Planthopper Nilaparvata lugens. Description: Khan, Murtaza, et al. RNAseq-Based Carboxylesterase Nl-EST1 Gene Expression Plasticity Identification and Its Potential Involvement in Fenobucarb Resistance in the Brown Planthopper Nilaparvata lugens. ''Insects''. 2024 Sep 26; '''15''' (10):
Characterization of the Virome Associated with the Ubiquitous Two-Spotted Spider Mite, Tetranychus urticae. Description: Ferreira, Lucas Yago Melo, et al. Characterization of the Virome Associated with the Ubiquitous Two-Spotted Spider Mite, Tetranychus urticae. ''Viruses''. 2024 Sep 27; '''16''' (10):
Conservation of molecular responses upon viral infection in the non-vascular plant Marchantia polymorpha. Description: Ros-Moner, Eric, et al. Conservation of molecular responses upon viral infection in the non-vascular plant Marchantia polymorpha. ''Nat Commun''. 2024 Sep 27; '''15''' (1):8326
Multi-View Integrative Approach For Imputing Short-Chain Fatty Acids and Identifying Key factors predicting Blood SCFA. Description: Liu, Anqi, et al. Multi-View Integrative Approach For Imputing Short-Chain Fatty Acids and Identifying Key factors predicting Blood SCFA. ''bioRxiv''. 2024 Sep 27;
Evolutionary origin and population diversity of a cryptic hybrid pathogen. Description: Steenwyk, Jacob L, et al. Evolutionary origin and population diversity of a cryptic hybrid pathogen. ''Nat Commun''. 2024 Sep 28; '''15''' (1):8412
Chromosome-level genome assembly and annotation of Clanis bilineata tsingtauica Mell (Lepidoptera: Sphingidae). Description: Yan, Yulu, et al. Chromosome-level genome assembly and annotation of Clanis bilineata tsingtauica Mell (Lepidoptera: Sphingidae). ''Sci Data''. 2024 Sep 30; '''11''' (1):1062
First Detection and Characterization of Smacovirus in the Human Vagina in Two Sequential Samples over a Twelve-Day Interval. Description: da Costa, Antonio Charlys, et al. First Detection and Characterization of Smacovirus in the Human Vagina in Two Sequential Samples over a Twelve-Day Interval. ''Viruses''. 2024 Sep 30; '''16''' (10):
MBCN: A novel reference database for Effcient Metagenomic analysis of human gut microbiome. Description: Zheng, Bo, et al. MBCN: A novel reference database for Effcient Metagenomic analysis of human gut microbiome. ''Heliyon''. 2024 Sep 30; '''10''' (18):e37422
Stress triggers gut dysbiosis via CRH-CRHR1-mitochondria pathway. Description: Zhang, Yiming, et al. Stress triggers gut dysbiosis via CRH-CRHR1-mitochondria pathway. ''NPJ Biofilms Microbiomes''. 2024 Sep 30; '''10''' (1):93
A diel multi-tissue genome-scale metabolic model of Vitis vinifera. Description: Sampaio, Marta, et al. A diel multi-tissue genome-scale metabolic model of Vitis vinifera. ''PLoS Comput Biol''. 2024 Oct; '''20''' (10):e1012506
Characterization of regeneration initiating cells during Xenopus laevis tail regeneration. Description: Sindelka, Radek, et al. Characterization of regeneration initiating cells during Xenopus laevis tail regeneration. ''Genome Biol''. 2024 Oct 1; '''25''' (1):251
Genomic and biogeographic characterisation of the novel prasinovirus Mantoniella tinhauana virus 1. Description: Rey Redondo, Elvira, et al. Genomic and biogeographic characterisation of the novel prasinovirus Mantoniella tinhauana virus 1. ''Environ Microbiol Rep''. 2024 Oct; '''16''' (5):e70020
Genomic variation across distribution of Micro-Tom, a model cultivar of tomato (Solanum lycopersicum). Description: Nagasaki, Hideki, et al. Genomic variation across distribution of Micro-Tom, a model cultivar of tomato (Solanum lycopersicum). ''DNA Res''. 2024 Oct 1; '''31''' (5):
High-quality genome of a novel Thermosynechococcaceae species from Namibia and characterization of its protein expression patterns at elevated temperatures. Description: Arnold, Nathanael D, et al. High-quality genome of a novel Thermosynechococcaceae species from Namibia and characterization of its protein expression patterns at elevated temperatures. ''Microbiologyopen''. 2024 Oct; '''13''' (5):e70000
Late-life dietary folate restriction reduces biosynthesis without compromising healthspan in mice. Description: Blank, Heidi M, et al. Late-life dietary folate restriction reduces biosynthesis without compromising healthspan in mice. ''Life Sci Alliance''. 2024 Oct; '''7''' (10):
Local cryptic diversity in salinity adaptation mechanisms in the wild outcrossing Brassica fruticulosa. Description: Busoms, Silvia, et al. Local cryptic diversity in salinity adaptation mechanisms in the wild outcrossing Brassica fruticulosa. ''Proc Natl Acad Sci U S A''. 2024 Oct; '''121''' (40):e2407821121
Metagenome sequencing and 982 microbial genomes from Kermadec and Diamantina Trenches sediments. Description: Li, Yingdong, et al. Metagenome sequencing and 982 microbial genomes from Kermadec and Diamantina Trenches sediments. ''Sci Data''. 2024 Oct 1; '''11''' (1):1067
Microbial genetic potential differs among cryospheric habitats of the Damma glacier. Description: Feng, Maomao, et al. Microbial genetic potential differs among cryospheric habitats of the Damma glacier. ''Microb Genom''. 2024 Oct; '''10''' (10):
Microbial metabolism affects the antibiotic resistome in the intestine of laying hens. Description: Yuan, Yilin, et al. Microbial metabolism affects the antibiotic resistome in the intestine of laying hens. ''Poult Sci''. 2024 Oct; '''103''' (10):104138
Parallel loss of sexual reproduction in field populations of a brown alga sheds light on the mechanisms underlying the emergence of asexuality. Description: Hoshino, Masakazu, et al. Parallel loss of sexual reproduction in field populations of a brown alga sheds light on the mechanisms underlying the emergence of asexuality. ''Nat Ecol Evol''. 2024 Oct; '''8''' (10):1916-1932
Seasonal variations in composition and function of gut microbiota in grazing yaks: Implications for adaptation to dietary shift on the Qinghai-Tibet plateau. Description: Wang, Xungang, et al. Seasonal variations in composition and function of gut microbiota in grazing yaks: Implications for adaptation to dietary shift on the Qinghai-Tibet plateau. ''Ecol Evol''. 2024 Oct; '''14''' (10):e70337
Tetraspanin-enriched microdomains play an important role in pathogenesis in the protozoan parasite Entamoeba histolytica. Description: Jiang, Han, et al. Tetraspanin-enriched microdomains play an important role in pathogenesis in the protozoan parasite Entamoeba histolytica. ''PLoS Pathog''. 2024 Oct; '''20''' (10):e1012151
VirTAXA: enhancing RNA virus taxonomic classification with remote homology search and tree-based validation. Description: Zhu, Yilin, et al. VirTAXA: enhancing RNA virus taxonomic classification with remote homology search and tree-based validation. ''Bioinformatics''. 2024 Oct 1; '''40''' (10):
A snapshot of the Physcomitrella N-terminome reveals N-terminal methylation of organellar proteins. Description: Hoernstein, Sebastian N W, et al. A snapshot of the Physcomitrella N-terminome reveals N-terminal methylation of organellar proteins. ''Plant Cell Rep''. 2024 Oct 3; '''43''' (10):250
Characterization of larval gut microbiota of two endoparasitoid wasps associated with their common host, Plutella xylostella (Linnaeus) (Lepidoptera: Plutellidae). Description: Hu, Na-Na, et al. Characterization of larval gut microbiota of two endoparasitoid wasps associated with their common host, Plutella xylostella (Linnaeus) (Lepidoptera: Plutellidae). ''Microbiol Spectr''. 2024 Oct 3; '''12''' (10):e0120824
Chromosome-level genome provides insights into evolution and diving adaptability in the vulnerable common pochard (Aythya ferina). Description: Xia, Tian, et al. Chromosome-level genome provides insights into evolution and diving adaptability in the vulnerable common pochard (Aythya ferina). ''BMC Genomics''. 2024 Oct 3; '''25''' (1):927
Emergence of a novel sequence type carbapenem-resistant hypervirulent Klebsiella pneumoniae ST6417 harboring bla(NDM-5) on the lncX3 plasmid. Description: Liu, Junnian, et al. Emergence of a novel sequence type carbapenem-resistant hypervirulent Klebsiella pneumoniae ST6417 harboring bla(NDM-5) on the lncX3 plasmid. ''Microbiol Spectr''. 2024 Oct 3; '''12''' (10):e0098424
Exploring pangenomic diversity and CRISPR-Cas evasion potential in jumbo phages: a comparative genomics study. Description: Magar, Sharayu, et al. Exploring pangenomic diversity and CRISPR-Cas evasion potential in jumbo phages: a comparative genomics study. ''Microbiol Spectr''. 2024 Oct 3; '''12''' (10):e0420023
The environmental microbial retrieving assessment of cell-processing facilities for cell therapy in a hospital laboratory. Description: Lian, Jiabian, et al. The environmental microbial retrieving assessment of cell-processing facilities for cell therapy in a hospital laboratory. ''Microbiol Spectr''. 2024 Oct 3; '''12''' (10):e0125724
Analyzing Antibiotic Resistance in Bacteria from Wastewater in Pakistan Using Whole-Genome Sequencing. Description: Sattar, Fazal, et al. Analyzing Antibiotic Resistance in Bacteria from Wastewater in Pakistan Using Whole-Genome Sequencing. ''Antibiotics (Basel)''. 2024 Oct 4; '''13''' (10):
Biodiversity of mudflat intertidal viromes along the Chinese coasts. Description: Ji, Mengzhi, et al. Biodiversity of mudflat intertidal viromes along the Chinese coasts. ''Nat Commun''. 2024 Oct 4; '''15''' (1):8611
Genomic Signatures of Domestication in a Fungus Obligately Farmed by Leafcutter Ants. Description: Leal-Dutra, Caio A, et al. Genomic Signatures of Domestication in a Fungus Obligately Farmed by Leafcutter Ants. ''Mol Biol Evol''. 2024 Oct 4; '''41''' (10):
Large expansion of plasma commensal viruses is associated with SIV pathogenesis in Macaca leonina. Description: Li, Yanpeng, et al. Large expansion of plasma commensal viruses is associated with SIV pathogenesis in Macaca leonina. ''Sci Adv''. 2024 Oct 4; '''10''' (40):eadq1152
Leveraging transcriptome sequence read archives for virus detection in wild and colony populations of triatomines (Hemiptera: Reduviidae: Triatominae). Description: Bourke, Brian P, et al. Leveraging transcriptome sequence read archives for virus detection in wild and colony populations of triatomines (Hemiptera: Reduviidae: Triatominae). ''Arch Virol''. 2024 Oct 4; '''169''' (10):215
VirID: Beyond Virus Discovery-An Integrated Platform for Comprehensive RNA Virus Characterization. Description: Yang, Ziyue, et al. VirID: Beyond Virus Discovery-An Integrated Platform for Comprehensive RNA Virus Characterization. ''Mol Biol Evol''. 2024 Oct 4; '''41''' (10):
Dothistroma septosporum and Dothistroma pini, the causal agents of Dothistroma needle blight, are infected by multiple viruses. Description: Trifkovic, Milos, et al. Dothistroma septosporum and Dothistroma pini, the causal agents of Dothistroma needle blight, are infected by multiple viruses. ''Virus Res''. 2024 Oct 5; '''350''': 199476
Characterizing virulence differences in a parasitoid wasp through comparative transcriptomic and proteomic. Description: Gornard, Samuel, et al. Characterizing virulence differences in a parasitoid wasp through comparative transcriptomic and proteomic. ''BMC Genomics''. 2024 Oct 7; '''25''' (1):940
Comparative genomics of Metarhizium brunneum strains V275 and ARSEF 4556: unraveling intraspecies diversity. Description: Kortsinoglou, Alexandra M, et al. Comparative genomics of Metarhizium brunneum strains V275 and ARSEF 4556: unraveling intraspecies diversity. ''G3 (Bethesda)''. 2024 Oct 7; '''14''' (10):
Diversity and characteristics of the oral microbiome influenced by race and ethnicity. Description: Wang, Qingguo, et al. Diversity and characteristics of the oral microbiome influenced by race and ethnicity. ''bioRxiv''. 2024 Oct 7;
Genome analysis of the esca-associated Basidiomycetes Fomitiporia mediterranea, Fomitiporia polymorpha, Inonotus vitis, and Tropicoporus texanus reveals virulence factor repertoires characteristic of white-rot fungi. Description: Garcia, Jadran F, et al. Genome analysis of the esca-associated Basidiomycetes Fomitiporia mediterranea, Fomitiporia polymorpha, Inonotus vitis, and Tropicoporus texanus reveals virulence factor repertoires characteristic of white-rot fungi. ''G3 (Bethesda)''. 2024 Oct 7; '''14''' (10):
Genomic Characterization and Establishment of a Genetic Manipulation System for Trichoderma sp. (Harzianum Clade) LZ117. Description: Yang, Jie, et al. Genomic Characterization and Establishment of a Genetic Manipulation System for Trichoderma sp. (Harzianum Clade) LZ117. ''J Fungi (Basel)''. 2024 Oct 7; '''10''' (10):
The efficacy of different biomarkers and endpoints to refine referrals for suspected prostate cancer: the TARGET study (Tiered integrAted tests for eaRly diaGnosis of clinically significant ProstatE Tumours). Description: Lophatananon, Artitaya, et al. The efficacy of different biomarkers and endpoints to refine referrals for suspected prostate cancer: the TARGET study (Tiered integrAted tests for eaRly diaGnosis of clinically significant ProstatE Tumours). ''BMC Med''. 2024 Oct 8; '''22''' (1):440
Colorectal cancer-associated bacteria are broadly distributed in global microbiomes and drivers of precancerous change. Description: Minot, Samuel S, et al. Colorectal cancer-associated bacteria are broadly distributed in global microbiomes and drivers of precancerous change. ''Sci Rep''. 2024 Oct 9; '''14''' (1):23646
Diversity and transcription of genes involved in respiratory As(V) reduction and As(III) methylation in Japanese paddy soils. Description: Ito, Koji, et al. Diversity and transcription of genes involved in respiratory As(V) reduction and As(III) methylation in Japanese paddy soils. ''BMC Microbiol''. 2024 Oct 9; '''24''' (1):396
First report of carbapenems encoding multidrug-resistant gram-negative bacteria from a pediatric hospital in Gaza Strip, Palestine. Description: El Aila, Nabil Abdullah, et al. First report of carbapenems encoding multidrug-resistant gram-negative bacteria from a pediatric hospital in Gaza Strip, Palestine. ''BMC Microbiol''. 2024 Oct 9; '''24''' (1):393
The conserved genetic program of male germ cells uncovers ancient regulators of human spermatogenesis. Description: Brattig-Correia, Rion, et al. The conserved genetic program of male germ cells uncovers ancient regulators of human spermatogenesis. ''Elife''. 2024 Oct 10; '''13''':
A chromosomal-level genome assembly of Corcyra cephalonica Stainton (Lepidoptera: Pyralidae). Description: Ding, Yinhuan, et al. A chromosomal-level genome assembly of Corcyra cephalonica Stainton (Lepidoptera: Pyralidae). ''Sci Data''. 2024 Oct 11; '''11''' (1):1118
Higher Frequency of SARS-CoV-2 RNA Shedding by Cats than Dogs in Households with Owners Recently Diagnosed with COVID-19. Description: Lunardi, Michele, et al. Higher Frequency of SARS-CoV-2 RNA Shedding by Cats than Dogs in Households with Owners Recently Diagnosed with COVID-19. ''Viruses''. 2024 Oct 11; '''16''' (10):
Untangling lineage introductions, persistence and transmission drivers of HP-PRRSV sublineage 8.7. Description: Sun, Yankuo, et al. Untangling lineage introductions, persistence and transmission drivers of HP-PRRSV sublineage 8.7. ''Nat Commun''. 2024 Oct 13; '''15''' (1):8842
Unveiling Temperature-Induced Structural Phase Transformations and CO(2) Binding Sites in CALF-20. Description: Drweska, Joanna, et al. Unveiling Temperature-Induced Structural Phase Transformations and CO(2) Binding Sites in CALF-20. ''Inorg Chem''. 2024 Oct 14; '''63''' (41):19277-19286
Activated sympathetic nerve post stroke downregulates Toll-like receptor 5 and disrupts the gut mucosal barrier. Description: Wang, Huidi, et al. Activated sympathetic nerve post stroke downregulates Toll-like receptor 5 and disrupts the gut mucosal barrier. ''Cell Rep Med''. 2024 Oct 15; '''5''' (10):101754
Characterization of microbiome, resistome, mobilome, and virulome in anoxic and oxic wastewater treatment processes in Slovakia and Taiwan. Description: Chen, Wei-Yu, et al. Characterization of microbiome, resistome, mobilome, and virulome in anoxic and oxic wastewater treatment processes in Slovakia and Taiwan. ''Heliyon''. 2024 Oct 15; '''10''' (19):e38723
Identification of Shemin pathway genes for tetrapyrrole biosynthesis in bacteriophage sequences from aquatic environments. Description: Wegner, Helen, et al. Identification of Shemin pathway genes for tetrapyrrole biosynthesis in bacteriophage sequences from aquatic environments. ''Nat Commun''. 2024 Oct 15; '''15''' (1):8783
Multi-omics framework to reveal the molecular determinants of fermentation performance in wine yeast populations. Description: de Celis, Miguel, et al. Multi-omics framework to reveal the molecular determinants of fermentation performance in wine yeast populations. ''Microbiome''. 2024 Oct 15; '''12''' (1):203
Unveiling lignocellulolytic potential: a genomic exploration of bacterial lineages within the termite gut. Description: Salgado, Joao Felipe M, et al. Unveiling lignocellulolytic potential: a genomic exploration of bacterial lineages within the termite gut. ''Microbiome''. 2024 Oct 15; '''12''' (1):201
A near chromosome-level genome assembly of a ghost moth (Lepidoptera, Hepialidae). Description: Weng, Yi-Ming, et al. A near chromosome-level genome assembly of a ghost moth (Lepidoptera, Hepialidae). ''Sci Data''. 2024 Oct 16; '''11''' (1):1139
A systematic regulatory network related to bulbil formation in Lilium lancifolium based on metabolome and transcriptome analyses. Description: Ma, Ruiyi, et al. A systematic regulatory network related to bulbil formation in Lilium lancifolium based on metabolome and transcriptome analyses. ''BMC Plant Biol''. 2024 Oct 16; '''24''' (1):969
Cold-water coral mortality under ocean warming is associated with pathogenic bacteria. Description: Chemel, Mathilde, et al. Cold-water coral mortality under ocean warming is associated with pathogenic bacteria. ''Environ Microbiome''. 2024 Oct 16; '''19''' (1):76
Metagenomic discovery of microbial eukaryotes in stool microbiomes. Description: Crouch, Audra L, et al. Metagenomic discovery of microbial eukaryotes in stool microbiomes. ''mBio''. 2024 Oct 16; '''15''' (10):e0206324
Revealing the progression and pathologic features of intraperitoneal infection of Trichomonas vaginalis in mice via parasite alpha-actinin-based immunological detection. Description: Xie, Yiting, et al. Revealing the progression and pathologic features of intraperitoneal infection of Trichomonas vaginalis in mice via parasite alpha-actinin-based immunological detection. ''BMC Infect Dis''. 2024 Oct 17; '''24''' (1):1173
The phageome of patients with ulcerative colitis treated with donor fecal microbiota reveals markers associated with disease remission. Description: Majzoub, Marwan E, et al. The phageome of patients with ulcerative colitis treated with donor fecal microbiota reveals markers associated with disease remission. ''Nat Commun''. 2024 Oct 17; '''15''' (1):8979
Seasonal variations of microbial communities and viral diversity in fishery-enhanced marine ranching sediments: insights into metabolic potentials and ecological interactions. Description: Chen, Cheng-Zhuang, et al. Seasonal variations of microbial communities and viral diversity in fishery-enhanced marine ranching sediments: insights into metabolic potentials and ecological interactions. ''Microbiome''. 2024 Oct 21; '''12''' (1):209
Gut microbiome and serum metabolome alterations associated with lactose intolerance (LI): a case‒control study and paired-sample study based on the American Gut Project (AGP). Description: Xue, Hong, et al. Gut microbiome and serum metabolome alterations associated with lactose intolerance (LI): a case‒control study and paired-sample study based on the American Gut Project (AGP). ''mSystems''. 2024 Oct 22; '''9''' (10):e0083924
The North Pacific Eukaryotic Gene Catalog of metatranscriptome assemblies and annotations. Description: Groussman, R D, et al. The North Pacific Eukaryotic Gene Catalog of metatranscriptome assemblies and annotations. ''Sci Data''. 2024 Oct 22; '''11''' (1):1161
The predicted secreted proteome of activated sludge microorganisms indicates distinct nutrient niches. Description: Wasmund, Kenneth, et al. The predicted secreted proteome of activated sludge microorganisms indicates distinct nutrient niches. ''mSystems''. 2024 Oct 22; '''9''' (10):e0030124
Chromosome-level genome assembly and functional annotation of Citrullus colocynthis: unlocking genetic resources for drought-resilient crop development. Description: Gkanogiannis, Anestis, et al. Chromosome-level genome assembly and functional annotation of Citrullus colocynthis: unlocking genetic resources for drought-resilient crop development. ''Planta''. 2024 Oct 23; '''260''' (6):124
Seasonal stability of the rumen microbiome contributes to the adaptation patterns to extreme environmental conditions in grazing yak and cattle. Description: Guo, Wei, et al. Seasonal stability of the rumen microbiome contributes to the adaptation patterns to extreme environmental conditions in grazing yak and cattle. ''BMC Biol''. 2024 Oct 23; '''22''' (1):240
Taxonomic variation, plastic degradation, and antibiotic resistance traits of plastisphere communities in the maturation pond of a wastewater treatment plant. Description: Maday, Stefan D M, et al. Taxonomic variation, plastic degradation, and antibiotic resistance traits of plastisphere communities in the maturation pond of a wastewater treatment plant. ''Appl Environ Microbiol''. 2024 Oct 23; '''90''' (10):e0071524
Pseudogymnoascus destructans invasion stage impacts the skin microbial functions of highly vulnerable Myotis lucifugus. Description: Lemieux-Labonte, Virginie, et al. Pseudogymnoascus destructans invasion stage impacts the skin microbial functions of highly vulnerable Myotis lucifugus. ''FEMS Microbiol Ecol''. 2024 Oct 25; '''100''' (11):
DGCNN approach links metagenome-derived taxon and functional information providing insight into global soil organic carbon. Description: Gardiner, Laura-Jayne, et al. DGCNN approach links metagenome-derived taxon and functional information providing insight into global soil organic carbon. ''NPJ Biofilms Microbiomes''. 2024 Oct 26; '''10''' (1):113
Molecular insights into Solanum sisymbriifolium's resistance against Globodera pallida via RNA-seq. Description: Varandas, Raquel, et al. Molecular insights into Solanum sisymbriifolium's resistance against Globodera pallida via RNA-seq. ''BMC Plant Biol''. 2024 Oct 26; '''24''' (1):1005
Segatella clades adopt distinct roles within a single individual's gut. Description: Xiao, Xieyue, et al. Segatella clades adopt distinct roles within a single individual's gut. ''NPJ Biofilms Microbiomes''. 2024 Oct 27; '''10''' (1):114
Carbon-Substituted Amines of the Cobalt Bis(dicarbollide) Ion: Stereochemistry and Acid-Base Properties. Description: Tuzun, Ece Zeynep, et al. Carbon-Substituted Amines of the Cobalt Bis(dicarbollide) Ion: Stereochemistry and Acid-Base Properties. ''Inorg Chem''. 2024 Oct 28; '''63''' (43):20600-20616
Analyzes of pan-genome and resequencing atlas unveil the genetic basis of jujube domestication. Description: Guo, Mingxin, et al. Analyzes of pan-genome and resequencing atlas unveil the genetic basis of jujube domestication. ''Nat Commun''. 2024 Oct 29; '''15''' (1):9320
Chromosome-level genome assembly of Megachile lagopoda (Linnaeus, 1761) (Hymenoptera: Megachilidae). Description: Zhang, Dan, et al. Chromosome-level genome assembly of Megachile lagopoda (Linnaeus, 1761) (Hymenoptera: Megachilidae). ''Sci Data''. 2024 Oct 29; '''11''' (1):1171
Insights into prokaryotic communities and their potential functions in biogeochemical cycles in cold seep. Description: Quan, Qiumei, et al. Insights into prokaryotic communities and their potential functions in biogeochemical cycles in cold seep. ''mSphere''. 2024 Oct 29; '''9''' (10):e0054924
Large-scale genomic analysis of Elizabethkingia anophelis. Description: Andriyanov, Pavel, et al. Large-scale genomic analysis of Elizabethkingia anophelis. ''BMC Genomics''. 2024 Oct 29; '''25''' (1):1015
Biosynthetic enzyme analysis identifies a protective role for TLR4-acting gut microbial sulfonolipids in inflammatory bowel disease. Description: Older, Ethan A, et al. Biosynthetic enzyme analysis identifies a protective role for TLR4-acting gut microbial sulfonolipids in inflammatory bowel disease. ''Nat Commun''. 2024 Oct 30; '''15''' (1):9371
Chromosome-scale genome assembly of the mangrove climber species Dalbergia candenatensis. Description: Shi, Miaomiao, et al. Chromosome-scale genome assembly of the mangrove climber species Dalbergia candenatensis. ''Sci Data''. 2024 Oct 31; '''11''' (1):1187
Deep mining reveals the diversity of endogenous viral elements in vertebrate genomes. Description: Nino Barreat, Jose Gabriel, et al. Deep mining reveals the diversity of endogenous viral elements in vertebrate genomes. ''Nat Microbiol''. 2024 Nov; '''9''' (11):3013-3024
Nature-based bioreactors: Tackling antibiotic resistance in urban wastewater treatment. Description: Bertrans-Tubau, Lluis, et al. Nature-based bioreactors: Tackling antibiotic resistance in urban wastewater treatment. ''Environ Sci Ecotechnol''. 2024 Nov; '''22''': 100445
SALINITY-Induced Changes in Diversity, Stability, and Functional Profiles of Microbial Communities in Different Saline Lakes in Arid Areas. Description: Gao, Lei, et al. SALINITY-Induced Changes in Diversity, Stability, and Functional Profiles of Microbial Communities in Different Saline Lakes in Arid Areas. ''Microb Ecol''. 2024 Nov 1; '''87''' (1):135
Genomic diversity of phages infecting the globally widespread genus Sulfurimonas. Description: Li, Xiaofeng, et al. Genomic diversity of phages infecting the globally widespread genus Sulfurimonas. ''Commun Biol''. 2024 Nov 2; '''7''' (1):1428
Characteristics and function of the gut microbiota in patients with IgA nephropathy via metagenomic sequencing technology. Description: Deng, Yang, et al. Characteristics and function of the gut microbiota in patients with IgA nephropathy via metagenomic sequencing technology. ''Ren Fail''. 2024 Dec; '''46''' (2):2393754
Cohabiting with ulcerative colitis patients decreases differences of gut microbiome between healthy individuals and the patients. Description: Li, Chen, et al. Cohabiting with ulcerative colitis patients decreases differences of gut microbiome between healthy individuals and the patients. ''Ann Med''. 2024 Dec; '''56''' (1):2337712
Differential prolyl hydroxylation by six Physcomitrella prolyl-4 hydroxylases. Description: Rempfer, Christine, et al. Differential prolyl hydroxylation by six Physcomitrella prolyl-4 hydroxylases. ''Comput Struct Biotechnol J''. 2024 Dec; '''23''': 2580-2594
Discovery of a novel marine Bacteroidetes with a rich repertoire of carbohydrate-active enzymes. Description: Chen, Beihan, et al. Discovery of a novel marine Bacteroidetes with a rich repertoire of carbohydrate-active enzymes. ''Comput Struct Biotechnol J''. 2024 Dec; '''23''': 406-416
EEfinder, a general purpose tool for identification of bacterial and viral endogenized elements in eukaryotic genomes. Description: Dias, Yago Jose Mariz, et al. EEfinder, a general purpose tool for identification of bacterial and viral endogenized elements in eukaryotic genomes. ''Comput Struct Biotechnol J''. 2024 Dec; '''23''': 3662-3668
Integrated omics analysis reveals the alteration of gut microbiota and fecal metabolites in Cervus elaphus kansuensis. Description: Zhang, Zhenxiang, et al. Integrated omics analysis reveals the alteration of gut microbiota and fecal metabolites in Cervus elaphus kansuensis. ''Appl Microbiol Biotechnol''. 2024 Dec; '''108''' (1):125
Viral diversity in wild and urban rodents of Yunnan Province, China. Description: Kane, Yakhouba, et al. Viral diversity in wild and urban rodents of Yunnan Province, China. ''Emerg Microbes Infect''. 2024 Dec; '''13''' (1):2290842
Whole genome sequence data of ZEN-degrading strain Levilactobacillus brevis PYN10_6_2 isolated from Tenebrio molitor larval feces. Description: Zhao, Mengru, et al. Whole genome sequence data of ZEN-degrading strain Levilactobacillus brevis PYN10_6_2 isolated from Tenebrio molitor larval feces. ''Data Brief''. 2024 Dec; '''57''': 110911