PubMed Mentions
The links below are to publications on PubMed referring to Bisque. This list is gathered weekly from PubMed automatically.
| Publication/References | |
| Bisulfite-Converted DNA Quantity Evaluation: A Multiplex Quantitative Real-Time PCR System for Evaluation of Bisulfite Conversion. Description: Hong, Sae Rom, et al. Bisulfite-Converted DNA Quantity Evaluation: A Multiplex Quantitative Real-Time PCR System for Evaluation of Bisulfite Conversion. ''Front Genet''. 2021; '''12''': 618955 | |
| A single-cell analysis of breast cancer cell lines to study tumour heterogeneity and drug response. Description: Gambardella, G, et al. A single-cell analysis of breast cancer cell lines to study tumour heterogeneity and drug response. ''Nat Commun''. 2022 Mar 31; '''13''' (1):1714 | |
| Evaluating performance and applications of sample-wise cell deconvolution methods on human brain transcriptomic data. Description: Dai, Rujia, et al. Evaluating performance and applications of sample-wise cell deconvolution methods on human brain transcriptomic data. ''bioRxiv''. 2023 Mar 15; | |
| Antipsychotic drug use complicates assessment of gene expression changes associated with schizophrenia. Description: Schulmann, Anton, et al. Antipsychotic drug use complicates assessment of gene expression changes associated with schizophrenia. ''Transl Psychiatry''. 2023 Mar 17; '''13''' (1):93 | |
| Decoding cell-type contributions to the cfRNA transcriptomic landscape of liver cancer. Description: Safrastyan, Aram, et al. Decoding cell-type contributions to the cfRNA transcriptomic landscape of liver cancer. ''Hum Genomics''. 2023 Oct 5; '''17''' (1):90 | |
| Transcriptome analysis of peripheral blood of Schistosoma mansoni infected children from the Albert Nile region in Uganda reveals genes implicated in fibrosis pathology. Description: Namulondo, Joyce, et al. Transcriptome analysis of peripheral blood of Schistosoma mansoni infected children from the Albert Nile region in Uganda reveals genes implicated in fibrosis pathology. ''PLoS Negl Trop Dis''. 2023 Nov; '''17''' (11):e0011455 | |
| Differences in gene expression profiles in early and late stage rhodesiense HAT individuals in Malawi. Description: Nambala, Peter, et al. Differences in gene expression profiles in early and late stage rhodesiense HAT individuals in Malawi. ''PLoS Negl Trop Dis''. 2023 Dec; '''17''' (12):e0011803 | |
| Identifying novel gene dysregulation associated with opioid overdose death: A meta-analysis of differential gene expression in human prefrontal cortex. Description: Carter, Javan K, et al. Identifying novel gene dysregulation associated with opioid overdose death: A meta-analysis of differential gene expression in human prefrontal cortex. ''medRxiv''. 2024 Jan 13; | |
| Highly Accurate Estimation of Cell Type Abundance in Bulk Tissues Based on Single-Cell Reference and Domain Adaptive Matching. Description: Guo, Xinyang, et al. Highly Accurate Estimation of Cell Type Abundance in Bulk Tissues Based on Single-Cell Reference and Domain Adaptive Matching. ''Adv Sci (Weinh)''. 2024 Feb; '''11''' (7):e2306329 | |
| ReCIDE: robust estimation of cell type proportions by integrating single-reference-based deconvolutions. Description: Li, Minghan, et al. ReCIDE: robust estimation of cell type proportions by integrating single-reference-based deconvolutions. ''Brief Bioinform''. 2024 Jul 25; '''25''' (5): | |
| Single nucleus RNA-sequencing integrated into risk variant colocalization discovers 17 cell-type-specific abdominal obesity genes for metabolic dysfunction-associated steatotic liver disease. Description: Lee, Seung Hyuk T, et al. Single nucleus RNA-sequencing integrated into risk variant colocalization discovers 17 cell-type-specific abdominal obesity genes for metabolic dysfunction-associated steatotic liver disease. ''EBioMedicine''. 2024 Aug; '''106''': 105232 | |
| Benchmarking transcriptome deconvolution methods for estimating tissue- and cell-type-specific extracellular vesicle abundances. Description: Larsen, Jannik Hjortshoj, et al. Benchmarking transcriptome deconvolution methods for estimating tissue- and cell-type-specific extracellular vesicle abundances. ''J Extracell Vesicles''. 2024 Sep; '''13''' (9):e12511 | |
| Cell-type deconvolution for bulk RNA-seq data using single-cell reference: a comparative analysis and recommendation guideline. Description: Xu, Xintian, et al. Cell-type deconvolution for bulk RNA-seq data using single-cell reference: a comparative analysis and recommendation guideline. ''Brief Bioinform''. 2024 Nov 22; '''26''' (1): | |
| Brain 5-hydroxymethylcytosine alterations are associated with Alzheimer's disease neuropathology. Description: Zhao, Jinying, et al. Brain 5-hydroxymethylcytosine alterations are associated with Alzheimer's disease neuropathology. ''Nat Commun''. 2025 Mar 22; '''16''' (1):2842 | |
| Gene expression differences associated with alcohol use disorder in human brain. Description: Willis, Caryn, et al. Gene expression differences associated with alcohol use disorder in human brain. ''Mol Psychiatry''. 2025 Apr; '''30''' (4):1617-1626 | |
| Functional maturation of preterm intestinal epithelium through CFTR activation. Description: Kim, Jihyun, et al. Functional maturation of preterm intestinal epithelium through CFTR activation. ''Commun Biol''. 2025 Apr 2; '''8''' (1):540 |