PubMed Mentions

The links below are to publications on PubMed referring to Mouse Connectome Project (MCP). This list is gathered weekly from PubMed automatically.

Publication/References
CoCoMac 2.0 and the future of tract-tracing databases. Description: Bakker, Rembrandt, et al. CoCoMac 2.0 and the future of tract-tracing databases. ''Front Neuroinform''. 2012; '''6''': 30
Combining collation and annotation efforts toward completion of the rat and mouse connectomes in BAMS. Description: Bota, Mihail, et al. Combining collation and annotation efforts toward completion of the rat and mouse connectomes in BAMS. ''Front Neuroinform''. 2012; '''6''': 2
Comprehensive connectivity of the mouse main olfactory bulb: analysis and online digital atlas. Description: Hintiryan, Houri, et al. Comprehensive connectivity of the mouse main olfactory bulb: analysis and online digital atlas. ''Front Neuroanat''. 2012; '''6''': 30
The Claustrum and Insula in Microcebus murinus: A High Resolution Diffusion Imaging Study. Description: Park, Soyoung, et al. The Claustrum and Insula in Microcebus murinus: A High Resolution Diffusion Imaging Study. ''Front Neuroanat''. 2012; '''6''': 21
Alterations in prefrontal-limbic functional activation and connectivity in chronic stress-induced visceral hyperalgesia. Description: Wang, Zhuo, et al. Alterations in prefrontal-limbic functional activation and connectivity in chronic stress-induced visceral hyperalgesia. ''PLoS One''. 2013; '''8''' (3):e59138
Brain-wide map of efferent projections from rat barrel cortex. Description: Zakiewicz, Izabela M, et al. Brain-wide map of efferent projections from rat barrel cortex. ''Front Neuroinform''. 2014; '''8''': 5
Functional connectivity-based parcellation and connectome of cortical midline structures in the mouse: a perfusion autoradiography study. Description: Holschneider, Daniel P, et al. Functional connectivity-based parcellation and connectome of cortical midline structures in the mouse: a perfusion autoradiography study. ''Front Neuroinform''. 2014; '''8''': 61
Visual cortical areas of the mouse: comparison of parcellation and network structure with primates. Description: Laramee, Marie-Eve, et al. Visual cortical areas of the mouse: comparison of parcellation and network structure with primates. ''Front Neural Circuits''. 2014; '''8''': 149
Neural networks of the mouse neocortex. Description: Zingg, Brian, et al. Neural networks of the mouse neocortex. ''Cell''. 2014 Feb 27; '''156''' (5):1096-111
The circuit architecture of whole brains at the mesoscopic scale. Description: Mitra, Partha P. The circuit architecture of whole brains at the mesoscopic scale. ''Neuron''. 2014 Sep 17; '''83''' (6):1273-83
BAMS2 workspace: a comprehensive and versatile neuroinformatic platform for collating and processing neuroanatomical connections. Description: Bota, Mihail, et al. BAMS2 workspace: a comprehensive and versatile neuroinformatic platform for collating and processing neuroanatomical connections. ''J Comp Neurol''. 2014 Oct 1; '''522''' (14):3160-76
From a meso- to micro-scale connectome: array tomography and mGRASP. Description: Rah, Jong-Cheol, et al. From a meso- to micro-scale connectome: array tomography and mGRASP. ''Front Neuroanat''. 2015; '''9''': 78
In Vivo Mapping of Cortical Columnar Networks in the Monkey with Focal Electrical and Optical Stimulation. Description: Roe, Anna Wang, et al. In Vivo Mapping of Cortical Columnar Networks in the Monkey with Focal Electrical and Optical Stimulation. ''Front Neuroanat''. 2015; '''9''': 135
Exploration and visualization of connectivity in the adult mouse brain. Description: Feng, David, et al. Exploration and visualization of connectivity in the adult mouse brain. ''Methods''. 2015 Feb; '''73''': 90-7
Auditory cortex controls sound-driven innate defense behaviour through corticofugal projections to inferior colliculus. Description: Xiong, Xiaorui R, et al. Auditory cortex controls sound-driven innate defense behaviour through corticofugal projections to inferior colliculus. ''Nat Commun''. 2015 Jun 11; '''6''': 7224
Connectomic Analysis of Brain Networks: Novel Techniques and Future Directions. Description: Cazemier, J Leonie, et al. Connectomic Analysis of Brain Networks: Novel Techniques and Future Directions. ''Front Neuroanat''. 2016; '''10''': 110
The mouse cortico-striatal projectome. Description: Hintiryan, Houri, et al. The mouse cortico-striatal projectome. ''Nat Neurosci''. 2016 Aug; '''19''' (8):1100-14
Towards a comprehensive atlas of cortical connections in a primate brain: Mapping tracer injection studies of the common marmoset into a reference digital template. Description: Majka, Piotr, et al. Towards a comprehensive atlas of cortical connections in a primate brain: Mapping tracer injection studies of the common marmoset into a reference digital template. ''J Comp Neurol''. 2016 Aug 1; '''524''' (11):2161-81
Reconstruction of Intratelencephalic Neurons in the Mouse Secondary Motor Cortex Reveals the Diverse Projection Patterns of Single Neurons. Description: Lin, Hui-Min, et al. Reconstruction of Intratelencephalic Neurons in the Mouse Secondary Motor Cortex Reveals the Diverse Projection Patterns of Single Neurons. ''Front Neuroanat''. 2018; '''12''': 86
Long distance projections of cortical pyramidal neurons. Description: Gerfen, Charles R, et al. Long distance projections of cortical pyramidal neurons. ''J Neurosci Res''. 2018 Sep; '''96''' (9):1467-1475
Integration of gene expression and brain-wide connectivity reveals the multiscale organization of mouse hippocampal networks. Description: Bienkowski, Michael S, et al. Integration of gene expression and brain-wide connectivity reveals the multiscale organization of mouse hippocampal networks. ''Nat Neurosci''. 2018 Nov; '''21''' (11):1628-1643
A high-throughput neurohistological pipeline for brain-wide mesoscale connectivity mapping of the common marmoset. Description: Lin, Meng Kuan, et al. A high-throughput neurohistological pipeline for brain-wide mesoscale connectivity mapping of the common marmoset. ''Elife''. 2019 Feb 5; '''8''':
Precise segmentation of densely interweaving neuron clusters using G-Cut. Description: Li, Rui, et al. Precise segmentation of densely interweaving neuron clusters using G-Cut. ''Nat Commun''. 2019 Apr 4; '''10''' (1):1549
In silico exploration of mouse brain dynamics by focal stimulation reflects the organization of functional networks and sensory processing. Description: Spiegler, Andreas, et al. In silico exploration of mouse brain dynamics by focal stimulation reflects the organization of functional networks and sensory processing. ''Netw Neurosci''. 2020; '''4''' (3):807-851
Organization of the inputs and outputs of the mouse superior colliculus. Description: Benavidez, Nora L, et al. Organization of the inputs and outputs of the mouse superior colliculus. ''Nat Commun''. 2021 Jun 28; '''12''' (1):4004
Cellular anatomy of the mouse primary motor cortex. Description: Munoz-Castaneda, Rodrigo, et al. Cellular anatomy of the mouse primary motor cortex. ''Nature''. 2021 Oct; '''598''' (7879):159-166
Molecular and spatial profiling of the paraventricular nucleus of the thalamus. Description: Gao, Claire, et al. Molecular and spatial profiling of the paraventricular nucleus of the thalamus. ''Elife''. 2023 Mar 3; '''12''':
A guide to the BRAIN Initiative Cell Census Network data ecosystem. Description: Hawrylycz, Michael, et al. A guide to the BRAIN Initiative Cell Census Network data ecosystem. ''PLoS Biol''. 2023 Jun; '''21''' (6):e3002133